Multiple sequence alignment - TraesCS1B01G176700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G176700 chr1B 100.000 2850 0 0 1 2850 317918657 317915808 0.000000e+00 5264.0
1 TraesCS1B01G176700 chr1B 95.556 45 1 1 2633 2676 581166541 581166497 1.420000e-08 71.3
2 TraesCS1B01G176700 chr1B 91.837 49 2 2 2349 2397 80041267 80041313 1.830000e-07 67.6
3 TraesCS1B01G176700 chr1B 93.617 47 0 3 2645 2690 155711549 155711593 1.830000e-07 67.6
4 TraesCS1B01G176700 chr1A 96.039 1338 42 6 1013 2345 286915737 286917068 0.000000e+00 2167.0
5 TraesCS1B01G176700 chr1A 95.026 382 13 5 2351 2730 286917133 286917510 1.890000e-166 595.0
6 TraesCS1B01G176700 chr1A 91.919 99 5 2 900 997 286915658 286915754 4.950000e-28 135.0
7 TraesCS1B01G176700 chr1A 98.462 65 1 0 2730 2794 286917617 286917681 6.450000e-22 115.0
8 TraesCS1B01G176700 chr1A 90.698 43 1 3 2354 2396 555810119 555810080 1.000000e-03 54.7
9 TraesCS1B01G176700 chr1D 94.696 1301 55 6 1013 2304 221444133 221445428 0.000000e+00 2008.0
10 TraesCS1B01G176700 chr1D 88.206 407 15 8 2349 2730 221445442 221445840 3.350000e-124 455.0
11 TraesCS1B01G176700 chr1D 92.373 118 8 1 13 130 433308233 433308117 1.760000e-37 167.0
12 TraesCS1B01G176700 chr1D 90.826 109 4 5 900 1005 221444054 221444159 1.060000e-29 141.0
13 TraesCS1B01G176700 chr1D 85.000 120 4 1 2730 2849 221445944 221446049 3.000000e-20 110.0
14 TraesCS1B01G176700 chr6D 81.852 540 89 8 139 677 318367842 318367311 2.010000e-121 446.0
15 TraesCS1B01G176700 chr6B 80.705 539 88 6 139 677 505708062 505708584 3.420000e-109 405.0
16 TraesCS1B01G176700 chr6B 75.388 451 96 14 139 583 220579339 220578898 1.340000e-48 204.0
17 TraesCS1B01G176700 chr6B 74.869 191 31 10 670 844 432384120 432384309 1.420000e-08 71.3
18 TraesCS1B01G176700 chr6B 87.931 58 6 1 2633 2690 213627738 213627682 1.830000e-07 67.6
19 TraesCS1B01G176700 chr6B 89.796 49 5 0 676 724 483917959 483917911 2.370000e-06 63.9
20 TraesCS1B01G176700 chr5B 93.077 130 8 1 1 130 272782002 272782130 3.750000e-44 189.0
21 TraesCS1B01G176700 chr5B 89.313 131 9 4 1 130 396620870 396620996 2.940000e-35 159.0
22 TraesCS1B01G176700 chrUn 93.220 118 7 1 13 130 471199429 471199545 3.770000e-39 172.0
23 TraesCS1B01G176700 chr7A 90.769 130 11 1 1 130 51654788 51654916 3.770000e-39 172.0
24 TraesCS1B01G176700 chr7A 100.000 28 0 0 2370 2397 202723088 202723115 5.000000e-03 52.8
25 TraesCS1B01G176700 chr7B 90.076 131 11 2 1 131 460245525 460245653 4.880000e-38 169.0
26 TraesCS1B01G176700 chr7B 89.313 131 12 2 1 131 460099354 460099482 2.270000e-36 163.0
27 TraesCS1B01G176700 chr7B 75.419 179 25 12 676 844 344466528 344466359 5.090000e-08 69.4
28 TraesCS1B01G176700 chr4B 89.922 129 12 1 1 129 562637176 562637049 6.320000e-37 165.0
29 TraesCS1B01G176700 chr2D 89.922 129 12 1 2 130 9649214 9649087 6.320000e-37 165.0
30 TraesCS1B01G176700 chr2D 90.909 44 1 3 2354 2397 555158739 555158699 3.970000e-04 56.5
31 TraesCS1B01G176700 chr3D 77.222 180 28 9 676 844 76899649 76899472 3.020000e-15 93.5
32 TraesCS1B01G176700 chr3D 75.956 183 31 8 676 846 191932993 191932812 6.540000e-12 82.4
33 TraesCS1B01G176700 chr3D 95.000 40 0 2 2357 2396 886433 886396 8.530000e-06 62.1
34 TraesCS1B01G176700 chr3D 86.207 58 7 1 2633 2690 246618570 246618514 8.530000e-06 62.1
35 TraesCS1B01G176700 chr3D 94.595 37 2 0 670 706 80201566 80201602 1.100000e-04 58.4
36 TraesCS1B01G176700 chr3D 90.909 44 1 3 2354 2397 341659415 341659455 3.970000e-04 56.5
37 TraesCS1B01G176700 chr4D 76.966 178 28 7 677 843 411475086 411474911 3.910000e-14 89.8
38 TraesCS1B01G176700 chr6A 87.500 56 5 2 670 724 503357099 503357153 2.370000e-06 63.9
39 TraesCS1B01G176700 chr2B 87.273 55 7 0 670 724 441301240 441301294 2.370000e-06 63.9
40 TraesCS1B01G176700 chr3A 88.462 52 3 1 2346 2397 511553372 511553420 3.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G176700 chr1B 317915808 317918657 2849 True 5264.0 5264 100.0000 1 2850 1 chr1B.!!$R1 2849
1 TraesCS1B01G176700 chr1A 286915658 286917681 2023 False 753.0 2167 95.3615 900 2794 4 chr1A.!!$F1 1894
2 TraesCS1B01G176700 chr1D 221444054 221446049 1995 False 678.5 2008 89.6820 900 2849 4 chr1D.!!$F1 1949
3 TraesCS1B01G176700 chr6D 318367311 318367842 531 True 446.0 446 81.8520 139 677 1 chr6D.!!$R1 538
4 TraesCS1B01G176700 chr6B 505708062 505708584 522 False 405.0 405 80.7050 139 677 1 chr6B.!!$F2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 606 0.032815 TCATGGTTTCGTCGTGCTGA 59.967 50.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 1987 0.0293 GCAGTTGCGAGAAACAAGCA 59.971 50.0 6.55 0.0 39.33 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.566261 GGCACACCACATCTGACG 58.434 61.111 0.00 0.00 35.26 4.35
18 19 1.005037 GGCACACCACATCTGACGA 60.005 57.895 0.00 0.00 35.26 4.20
19 20 1.016130 GGCACACCACATCTGACGAG 61.016 60.000 0.00 0.00 35.26 4.18
20 21 0.038251 GCACACCACATCTGACGAGA 60.038 55.000 0.00 0.00 0.00 4.04
21 22 1.605457 GCACACCACATCTGACGAGAA 60.605 52.381 0.00 0.00 0.00 2.87
22 23 2.754472 CACACCACATCTGACGAGAAA 58.246 47.619 0.00 0.00 0.00 2.52
23 24 2.733552 CACACCACATCTGACGAGAAAG 59.266 50.000 0.00 0.00 0.00 2.62
24 25 2.289072 ACACCACATCTGACGAGAAAGG 60.289 50.000 0.00 0.00 0.00 3.11
25 26 2.029020 CACCACATCTGACGAGAAAGGA 60.029 50.000 0.00 0.00 0.00 3.36
26 27 2.834549 ACCACATCTGACGAGAAAGGAT 59.165 45.455 0.00 0.00 0.00 3.24
27 28 3.261897 ACCACATCTGACGAGAAAGGATT 59.738 43.478 0.00 0.00 0.00 3.01
28 29 4.466370 ACCACATCTGACGAGAAAGGATTA 59.534 41.667 0.00 0.00 0.00 1.75
29 30 5.046591 ACCACATCTGACGAGAAAGGATTAA 60.047 40.000 0.00 0.00 0.00 1.40
30 31 5.292101 CCACATCTGACGAGAAAGGATTAAC 59.708 44.000 0.00 0.00 0.00 2.01
31 32 6.102663 CACATCTGACGAGAAAGGATTAACT 58.897 40.000 0.00 0.00 0.00 2.24
32 33 6.254589 CACATCTGACGAGAAAGGATTAACTC 59.745 42.308 0.00 0.00 0.00 3.01
33 34 5.977489 TCTGACGAGAAAGGATTAACTCA 57.023 39.130 0.00 0.00 33.39 3.41
34 35 5.955488 TCTGACGAGAAAGGATTAACTCAG 58.045 41.667 0.00 0.00 33.39 3.35
35 36 5.710567 TCTGACGAGAAAGGATTAACTCAGA 59.289 40.000 0.00 0.00 33.39 3.27
36 37 5.710984 TGACGAGAAAGGATTAACTCAGAC 58.289 41.667 0.00 0.00 33.39 3.51
37 38 5.477291 TGACGAGAAAGGATTAACTCAGACT 59.523 40.000 0.00 0.00 33.39 3.24
38 39 6.015350 TGACGAGAAAGGATTAACTCAGACTT 60.015 38.462 0.00 0.00 33.39 3.01
39 40 6.391537 ACGAGAAAGGATTAACTCAGACTTC 58.608 40.000 0.00 0.00 33.39 3.01
40 41 6.015350 ACGAGAAAGGATTAACTCAGACTTCA 60.015 38.462 0.00 0.00 33.39 3.02
41 42 6.309251 CGAGAAAGGATTAACTCAGACTTCAC 59.691 42.308 0.00 0.00 33.39 3.18
42 43 7.067496 AGAAAGGATTAACTCAGACTTCACA 57.933 36.000 0.00 0.00 0.00 3.58
43 44 7.684529 AGAAAGGATTAACTCAGACTTCACAT 58.315 34.615 0.00 0.00 0.00 3.21
44 45 8.160106 AGAAAGGATTAACTCAGACTTCACATT 58.840 33.333 0.00 0.00 0.00 2.71
45 46 7.913674 AAGGATTAACTCAGACTTCACATTC 57.086 36.000 0.00 0.00 0.00 2.67
46 47 6.102663 AGGATTAACTCAGACTTCACATTCG 58.897 40.000 0.00 0.00 0.00 3.34
47 48 6.071334 AGGATTAACTCAGACTTCACATTCGA 60.071 38.462 0.00 0.00 0.00 3.71
48 49 6.035112 GGATTAACTCAGACTTCACATTCGAC 59.965 42.308 0.00 0.00 0.00 4.20
49 50 3.305398 ACTCAGACTTCACATTCGACC 57.695 47.619 0.00 0.00 0.00 4.79
50 51 2.254459 CTCAGACTTCACATTCGACCG 58.746 52.381 0.00 0.00 0.00 4.79
51 52 1.883926 TCAGACTTCACATTCGACCGA 59.116 47.619 0.00 0.00 0.00 4.69
52 53 2.295070 TCAGACTTCACATTCGACCGAA 59.705 45.455 7.33 7.33 38.59 4.30
53 54 3.057019 CAGACTTCACATTCGACCGAAA 58.943 45.455 8.97 0.00 37.69 3.46
54 55 3.121944 CAGACTTCACATTCGACCGAAAG 59.878 47.826 8.97 7.34 37.69 2.62
55 56 3.057734 GACTTCACATTCGACCGAAAGT 58.942 45.455 8.97 7.99 36.63 2.66
56 57 4.022589 AGACTTCACATTCGACCGAAAGTA 60.023 41.667 11.76 0.00 34.81 2.24
57 58 4.235360 ACTTCACATTCGACCGAAAGTAG 58.765 43.478 11.76 9.70 34.81 2.57
58 59 3.928727 TCACATTCGACCGAAAGTAGT 57.071 42.857 11.76 5.29 34.81 2.73
59 60 4.247267 TCACATTCGACCGAAAGTAGTT 57.753 40.909 11.76 0.00 34.81 2.24
60 61 4.624015 TCACATTCGACCGAAAGTAGTTT 58.376 39.130 11.76 0.00 34.81 2.66
61 62 5.771469 TCACATTCGACCGAAAGTAGTTTA 58.229 37.500 11.76 0.00 34.81 2.01
62 63 5.860182 TCACATTCGACCGAAAGTAGTTTAG 59.140 40.000 11.76 0.00 34.81 1.85
63 64 5.632347 CACATTCGACCGAAAGTAGTTTAGT 59.368 40.000 11.76 0.00 34.81 2.24
64 65 6.145048 CACATTCGACCGAAAGTAGTTTAGTT 59.855 38.462 11.76 0.00 34.81 2.24
65 66 7.326789 CACATTCGACCGAAAGTAGTTTAGTTA 59.673 37.037 11.76 0.00 34.81 2.24
66 67 7.867403 ACATTCGACCGAAAGTAGTTTAGTTAA 59.133 33.333 10.67 0.00 34.81 2.01
67 68 7.858052 TTCGACCGAAAGTAGTTTAGTTAAG 57.142 36.000 2.02 0.00 0.00 1.85
68 69 5.858581 TCGACCGAAAGTAGTTTAGTTAAGC 59.141 40.000 0.00 0.00 0.00 3.09
69 70 5.860716 CGACCGAAAGTAGTTTAGTTAAGCT 59.139 40.000 0.00 0.00 0.00 3.74
70 71 6.364435 CGACCGAAAGTAGTTTAGTTAAGCTT 59.636 38.462 3.48 3.48 0.00 3.74
71 72 7.538678 CGACCGAAAGTAGTTTAGTTAAGCTTA 59.461 37.037 0.86 0.86 0.00 3.09
72 73 8.754230 ACCGAAAGTAGTTTAGTTAAGCTTAG 57.246 34.615 6.24 0.00 0.00 2.18
73 74 8.363390 ACCGAAAGTAGTTTAGTTAAGCTTAGT 58.637 33.333 6.24 1.12 0.00 2.24
74 75 9.201127 CCGAAAGTAGTTTAGTTAAGCTTAGTT 57.799 33.333 6.24 1.92 0.00 2.24
107 108 5.786401 TTGTGTTTTATGTTTGGTTGTGC 57.214 34.783 0.00 0.00 0.00 4.57
108 109 4.820897 TGTGTTTTATGTTTGGTTGTGCA 58.179 34.783 0.00 0.00 0.00 4.57
109 110 5.237815 TGTGTTTTATGTTTGGTTGTGCAA 58.762 33.333 0.00 0.00 0.00 4.08
110 111 5.700832 TGTGTTTTATGTTTGGTTGTGCAAA 59.299 32.000 0.00 0.00 0.00 3.68
111 112 6.204688 TGTGTTTTATGTTTGGTTGTGCAAAA 59.795 30.769 0.00 0.00 0.00 2.44
112 113 6.521477 GTGTTTTATGTTTGGTTGTGCAAAAC 59.479 34.615 11.58 11.58 40.56 2.43
113 114 6.428159 TGTTTTATGTTTGGTTGTGCAAAACT 59.572 30.769 19.06 1.05 40.73 2.66
114 115 7.602644 TGTTTTATGTTTGGTTGTGCAAAACTA 59.397 29.630 19.06 10.90 40.73 2.24
115 116 8.608317 GTTTTATGTTTGGTTGTGCAAAACTAT 58.392 29.630 19.06 9.44 40.73 2.12
116 117 7.938563 TTATGTTTGGTTGTGCAAAACTATC 57.061 32.000 19.06 10.06 40.73 2.08
117 118 5.590530 TGTTTGGTTGTGCAAAACTATCT 57.409 34.783 19.06 0.00 40.73 1.98
118 119 6.701145 TGTTTGGTTGTGCAAAACTATCTA 57.299 33.333 19.06 0.00 40.73 1.98
119 120 7.283625 TGTTTGGTTGTGCAAAACTATCTAT 57.716 32.000 19.06 0.00 40.73 1.98
120 121 7.144661 TGTTTGGTTGTGCAAAACTATCTATG 58.855 34.615 19.06 0.00 40.73 2.23
121 122 6.892658 TTGGTTGTGCAAAACTATCTATGT 57.107 33.333 19.06 0.00 0.00 2.29
122 123 6.892658 TGGTTGTGCAAAACTATCTATGTT 57.107 33.333 19.06 0.00 0.00 2.71
123 124 7.283625 TGGTTGTGCAAAACTATCTATGTTT 57.716 32.000 19.06 0.00 39.03 2.83
124 125 8.397575 TGGTTGTGCAAAACTATCTATGTTTA 57.602 30.769 19.06 0.00 36.72 2.01
125 126 9.019656 TGGTTGTGCAAAACTATCTATGTTTAT 57.980 29.630 19.06 0.00 36.72 1.40
126 127 9.289303 GGTTGTGCAAAACTATCTATGTTTATG 57.711 33.333 19.06 0.00 36.72 1.90
127 128 9.840427 GTTGTGCAAAACTATCTATGTTTATGT 57.160 29.630 12.75 0.00 36.72 2.29
172 173 2.407340 AGACTCCCTCCACAGTTTCT 57.593 50.000 0.00 0.00 0.00 2.52
173 174 3.544698 AGACTCCCTCCACAGTTTCTA 57.455 47.619 0.00 0.00 0.00 2.10
179 180 5.546499 ACTCCCTCCACAGTTTCTATTACAA 59.454 40.000 0.00 0.00 0.00 2.41
181 182 6.414732 TCCCTCCACAGTTTCTATTACAATG 58.585 40.000 0.00 0.00 0.00 2.82
184 185 7.993183 CCCTCCACAGTTTCTATTACAATGTAT 59.007 37.037 0.00 0.00 0.00 2.29
194 195 7.420184 TCTATTACAATGTATTCACATGCGG 57.580 36.000 0.00 0.00 44.83 5.69
197 198 1.404748 CAATGTATTCACATGCGGCCA 59.595 47.619 2.24 0.00 44.83 5.36
216 217 3.628646 AACGCCCAGCTCCACCATC 62.629 63.158 0.00 0.00 0.00 3.51
221 222 1.410083 GCCCAGCTCCACCATCATAAA 60.410 52.381 0.00 0.00 0.00 1.40
222 223 2.301346 CCCAGCTCCACCATCATAAAC 58.699 52.381 0.00 0.00 0.00 2.01
223 224 2.357050 CCCAGCTCCACCATCATAAACA 60.357 50.000 0.00 0.00 0.00 2.83
231 232 6.745190 GCTCCACCATCATAAACATCCTATGA 60.745 42.308 0.00 0.00 39.48 2.15
232 233 6.533730 TCCACCATCATAAACATCCTATGAC 58.466 40.000 0.00 0.00 38.32 3.06
245 246 6.535540 ACATCCTATGACGACTACTCACTAT 58.464 40.000 0.00 0.00 0.00 2.12
253 254 2.541178 CGACTACTCACTATTCGCCCAC 60.541 54.545 0.00 0.00 0.00 4.61
261 262 1.977594 CTATTCGCCCACGTTGCCAC 61.978 60.000 1.48 0.00 41.18 5.01
266 267 3.294493 CCCACGTTGCCACCCTTG 61.294 66.667 0.00 0.00 0.00 3.61
277 278 0.478507 CCACCCTTGTGAAGAACCCT 59.521 55.000 0.00 0.00 45.76 4.34
279 280 1.956477 CACCCTTGTGAAGAACCCTTG 59.044 52.381 0.00 0.00 45.76 3.61
280 281 1.569072 ACCCTTGTGAAGAACCCTTGT 59.431 47.619 0.00 0.00 31.62 3.16
285 287 3.764237 TGTGAAGAACCCTTGTCTACC 57.236 47.619 0.00 0.00 31.62 3.18
294 296 1.436336 CTTGTCTACCCCGCGTAGG 59.564 63.158 4.92 8.29 44.13 3.18
318 320 3.559171 GGCCTGCCTAAATCCATATTCGA 60.559 47.826 0.00 0.00 0.00 3.71
319 321 4.265073 GCCTGCCTAAATCCATATTCGAT 58.735 43.478 0.00 0.00 0.00 3.59
334 336 3.868757 TTCGATCCTCGTCAACAATCT 57.131 42.857 0.00 0.00 41.35 2.40
341 343 4.998788 TCCTCGTCAACAATCTGATGTAG 58.001 43.478 0.00 0.00 34.51 2.74
345 347 5.778862 TCGTCAACAATCTGATGTAGAACA 58.221 37.500 0.00 0.00 39.30 3.18
349 351 7.239271 GTCAACAATCTGATGTAGAACATGTG 58.761 38.462 0.00 0.00 39.27 3.21
399 401 1.080569 GGCATTGCGGTGTTTCCAG 60.081 57.895 1.91 0.00 35.57 3.86
411 413 3.386402 GGTGTTTCCAGATTTCCCACAAA 59.614 43.478 0.00 0.00 35.97 2.83
414 416 4.467795 TGTTTCCAGATTTCCCACAAAACA 59.532 37.500 0.00 0.00 34.15 2.83
452 454 2.790791 CCGCCTTCCGATGCTCTCT 61.791 63.158 0.00 0.00 40.02 3.10
459 461 2.264005 TCCGATGCTCTCTACTCTCC 57.736 55.000 0.00 0.00 0.00 3.71
482 484 1.375908 GCCTGATGCACCACTTCGA 60.376 57.895 0.00 0.00 40.77 3.71
528 530 2.948315 CTCTTTCTGGCTTTCCCATAGC 59.052 50.000 0.00 0.00 44.33 2.97
535 537 0.386838 GCTTTCCCATAGCCATGCAC 59.613 55.000 0.00 0.00 32.45 4.57
596 598 5.239359 CATGATGTGATTCATGGTTTCGT 57.761 39.130 6.55 0.00 46.02 3.85
597 599 4.944962 TGATGTGATTCATGGTTTCGTC 57.055 40.909 0.00 0.00 36.83 4.20
598 600 3.370672 TGATGTGATTCATGGTTTCGTCG 59.629 43.478 0.00 0.00 36.83 5.12
599 601 2.761559 TGTGATTCATGGTTTCGTCGT 58.238 42.857 0.00 0.00 0.00 4.34
600 602 2.478514 TGTGATTCATGGTTTCGTCGTG 59.521 45.455 0.00 0.00 0.00 4.35
601 603 1.463056 TGATTCATGGTTTCGTCGTGC 59.537 47.619 0.00 0.00 0.00 5.34
602 604 1.732259 GATTCATGGTTTCGTCGTGCT 59.268 47.619 0.00 0.00 0.00 4.40
603 605 0.865111 TTCATGGTTTCGTCGTGCTG 59.135 50.000 0.00 0.00 0.00 4.41
604 606 0.032815 TCATGGTTTCGTCGTGCTGA 59.967 50.000 0.00 0.00 0.00 4.26
605 607 1.078709 CATGGTTTCGTCGTGCTGAT 58.921 50.000 0.00 0.00 0.00 2.90
606 608 1.061131 CATGGTTTCGTCGTGCTGATC 59.939 52.381 0.00 0.00 0.00 2.92
607 609 1.006825 TGGTTTCGTCGTGCTGATCG 61.007 55.000 0.00 0.00 0.00 3.69
608 610 1.057361 GTTTCGTCGTGCTGATCGC 59.943 57.895 3.07 3.07 39.77 4.58
616 618 3.970721 TGCTGATCGCACAACAGG 58.029 55.556 7.93 0.00 45.47 4.00
617 619 2.327343 TGCTGATCGCACAACAGGC 61.327 57.895 7.93 0.00 45.47 4.85
618 620 2.327343 GCTGATCGCACAACAGGCA 61.327 57.895 4.93 0.00 38.92 4.75
619 621 1.792301 CTGATCGCACAACAGGCAG 59.208 57.895 0.00 0.00 0.00 4.85
620 622 1.642037 CTGATCGCACAACAGGCAGG 61.642 60.000 0.00 0.00 0.00 4.85
621 623 3.044059 GATCGCACAACAGGCAGGC 62.044 63.158 0.00 0.00 0.00 4.85
622 624 3.848301 ATCGCACAACAGGCAGGCA 62.848 57.895 0.00 0.00 0.00 4.75
623 625 4.332637 CGCACAACAGGCAGGCAC 62.333 66.667 0.00 0.00 0.00 5.01
624 626 2.908940 GCACAACAGGCAGGCACT 60.909 61.111 0.00 0.00 43.88 4.40
625 627 2.912624 GCACAACAGGCAGGCACTC 61.913 63.158 0.00 0.00 34.60 3.51
626 628 1.228063 CACAACAGGCAGGCACTCT 60.228 57.895 0.00 0.00 34.60 3.24
627 629 1.072159 ACAACAGGCAGGCACTCTC 59.928 57.895 0.00 0.00 34.60 3.20
628 630 1.071987 CAACAGGCAGGCACTCTCA 59.928 57.895 0.00 0.00 34.60 3.27
629 631 0.322277 CAACAGGCAGGCACTCTCAT 60.322 55.000 0.00 0.00 34.60 2.90
630 632 0.322277 AACAGGCAGGCACTCTCATG 60.322 55.000 0.00 0.00 34.60 3.07
631 633 2.113433 CAGGCAGGCACTCTCATGC 61.113 63.158 0.00 0.00 45.34 4.06
639 641 1.221414 GCACTCTCATGCGGTAATCC 58.779 55.000 0.00 0.00 35.50 3.01
640 642 1.871080 CACTCTCATGCGGTAATCCC 58.129 55.000 0.00 0.00 0.00 3.85
641 643 0.759346 ACTCTCATGCGGTAATCCCC 59.241 55.000 0.00 0.00 0.00 4.81
642 644 1.051812 CTCTCATGCGGTAATCCCCT 58.948 55.000 0.00 0.00 0.00 4.79
643 645 1.001406 CTCTCATGCGGTAATCCCCTC 59.999 57.143 0.00 0.00 0.00 4.30
644 646 0.035458 CTCATGCGGTAATCCCCTCC 59.965 60.000 0.00 0.00 0.00 4.30
645 647 0.399949 TCATGCGGTAATCCCCTCCT 60.400 55.000 0.00 0.00 0.00 3.69
646 648 0.035458 CATGCGGTAATCCCCTCCTC 59.965 60.000 0.00 0.00 0.00 3.71
647 649 1.472662 ATGCGGTAATCCCCTCCTCG 61.473 60.000 0.00 0.00 0.00 4.63
648 650 2.735237 CGGTAATCCCCTCCTCGC 59.265 66.667 0.00 0.00 0.00 5.03
649 651 2.868986 CGGTAATCCCCTCCTCGCC 61.869 68.421 0.00 0.00 0.00 5.54
650 652 1.764854 GGTAATCCCCTCCTCGCCA 60.765 63.158 0.00 0.00 0.00 5.69
651 653 1.342672 GGTAATCCCCTCCTCGCCAA 61.343 60.000 0.00 0.00 0.00 4.52
652 654 0.765510 GTAATCCCCTCCTCGCCAAT 59.234 55.000 0.00 0.00 0.00 3.16
653 655 1.143073 GTAATCCCCTCCTCGCCAATT 59.857 52.381 0.00 0.00 0.00 2.32
654 656 0.631212 AATCCCCTCCTCGCCAATTT 59.369 50.000 0.00 0.00 0.00 1.82
655 657 0.106519 ATCCCCTCCTCGCCAATTTG 60.107 55.000 0.00 0.00 0.00 2.32
656 658 1.000896 CCCCTCCTCGCCAATTTGT 60.001 57.895 0.00 0.00 0.00 2.83
657 659 1.032114 CCCCTCCTCGCCAATTTGTC 61.032 60.000 0.00 0.00 0.00 3.18
658 660 0.035056 CCCTCCTCGCCAATTTGTCT 60.035 55.000 0.00 0.00 0.00 3.41
659 661 1.089920 CCTCCTCGCCAATTTGTCTG 58.910 55.000 0.00 0.00 0.00 3.51
660 662 1.339055 CCTCCTCGCCAATTTGTCTGA 60.339 52.381 0.00 0.00 0.00 3.27
661 663 1.734465 CTCCTCGCCAATTTGTCTGAC 59.266 52.381 0.00 0.00 0.00 3.51
662 664 0.443869 CCTCGCCAATTTGTCTGACG 59.556 55.000 2.98 0.00 0.00 4.35
663 665 1.148310 CTCGCCAATTTGTCTGACGT 58.852 50.000 2.98 0.00 0.00 4.34
664 666 1.126846 CTCGCCAATTTGTCTGACGTC 59.873 52.381 9.11 9.11 0.00 4.34
665 667 0.165944 CGCCAATTTGTCTGACGTCC 59.834 55.000 14.12 0.00 0.00 4.79
666 668 1.234821 GCCAATTTGTCTGACGTCCA 58.765 50.000 14.12 0.30 0.00 4.02
667 669 1.197721 GCCAATTTGTCTGACGTCCAG 59.802 52.381 14.12 10.62 44.27 3.86
668 670 1.197721 CCAATTTGTCTGACGTCCAGC 59.802 52.381 14.12 3.24 42.62 4.85
669 671 1.872952 CAATTTGTCTGACGTCCAGCA 59.127 47.619 14.12 6.03 42.62 4.41
670 672 2.254546 ATTTGTCTGACGTCCAGCAA 57.745 45.000 14.12 11.83 42.62 3.91
671 673 2.254546 TTTGTCTGACGTCCAGCAAT 57.745 45.000 14.12 0.00 42.62 3.56
672 674 1.795768 TTGTCTGACGTCCAGCAATC 58.204 50.000 14.12 0.00 42.62 2.67
673 675 0.969149 TGTCTGACGTCCAGCAATCT 59.031 50.000 14.12 0.00 42.62 2.40
674 676 1.337167 TGTCTGACGTCCAGCAATCTG 60.337 52.381 14.12 0.00 42.62 2.90
675 677 0.969149 TCTGACGTCCAGCAATCTGT 59.031 50.000 14.12 0.00 42.62 3.41
676 678 1.067565 TCTGACGTCCAGCAATCTGTC 60.068 52.381 14.12 0.00 42.62 3.51
677 679 0.969149 TGACGTCCAGCAATCTGTCT 59.031 50.000 14.12 0.00 38.66 3.41
678 680 2.164422 CTGACGTCCAGCAATCTGTCTA 59.836 50.000 14.12 0.00 38.66 2.59
679 681 2.760650 TGACGTCCAGCAATCTGTCTAT 59.239 45.455 14.12 0.00 38.66 1.98
680 682 3.119291 GACGTCCAGCAATCTGTCTATG 58.881 50.000 3.51 0.00 38.66 2.23
681 683 2.497675 ACGTCCAGCAATCTGTCTATGT 59.502 45.455 0.00 0.00 38.66 2.29
682 684 3.055819 ACGTCCAGCAATCTGTCTATGTT 60.056 43.478 0.00 0.00 38.66 2.71
683 685 3.935203 CGTCCAGCAATCTGTCTATGTTT 59.065 43.478 0.00 0.00 38.66 2.83
684 686 5.109210 CGTCCAGCAATCTGTCTATGTTTA 58.891 41.667 0.00 0.00 38.66 2.01
685 687 5.755375 CGTCCAGCAATCTGTCTATGTTTAT 59.245 40.000 0.00 0.00 38.66 1.40
686 688 6.292542 CGTCCAGCAATCTGTCTATGTTTATG 60.293 42.308 0.00 0.00 38.66 1.90
687 689 6.540189 GTCCAGCAATCTGTCTATGTTTATGT 59.460 38.462 0.00 0.00 38.66 2.29
688 690 7.066284 GTCCAGCAATCTGTCTATGTTTATGTT 59.934 37.037 0.00 0.00 38.66 2.71
689 691 7.611467 TCCAGCAATCTGTCTATGTTTATGTTT 59.389 33.333 0.00 0.00 38.66 2.83
690 692 7.699391 CCAGCAATCTGTCTATGTTTATGTTTG 59.301 37.037 0.00 0.00 38.66 2.93
691 693 8.453320 CAGCAATCTGTCTATGTTTATGTTTGA 58.547 33.333 0.00 0.00 35.61 2.69
692 694 9.013229 AGCAATCTGTCTATGTTTATGTTTGAA 57.987 29.630 0.00 0.00 0.00 2.69
693 695 9.793252 GCAATCTGTCTATGTTTATGTTTGAAT 57.207 29.630 0.00 0.00 0.00 2.57
710 712 9.793252 ATGTTTGAATACATGCTACTTTTGATC 57.207 29.630 0.00 0.00 37.36 2.92
711 713 9.013229 TGTTTGAATACATGCTACTTTTGATCT 57.987 29.630 0.00 0.00 0.00 2.75
718 720 9.956720 ATACATGCTACTTTTGATCTAAATTGC 57.043 29.630 2.77 8.22 0.00 3.56
719 721 8.059798 ACATGCTACTTTTGATCTAAATTGCT 57.940 30.769 15.95 5.98 0.00 3.91
720 722 8.526147 ACATGCTACTTTTGATCTAAATTGCTT 58.474 29.630 15.95 10.69 0.00 3.91
721 723 9.362539 CATGCTACTTTTGATCTAAATTGCTTT 57.637 29.630 15.95 7.13 0.00 3.51
722 724 8.746922 TGCTACTTTTGATCTAAATTGCTTTG 57.253 30.769 15.95 3.65 0.00 2.77
723 725 8.575589 TGCTACTTTTGATCTAAATTGCTTTGA 58.424 29.630 15.95 0.00 0.00 2.69
724 726 9.578439 GCTACTTTTGATCTAAATTGCTTTGAT 57.422 29.630 2.77 0.00 0.00 2.57
818 820 8.983307 AATACTTCACTAAGAGTTTTAGTCCG 57.017 34.615 3.16 0.00 36.50 4.79
819 821 6.402456 ACTTCACTAAGAGTTTTAGTCCGT 57.598 37.500 3.16 0.00 36.50 4.69
820 822 6.814043 ACTTCACTAAGAGTTTTAGTCCGTT 58.186 36.000 3.16 0.00 36.50 4.44
821 823 7.945134 ACTTCACTAAGAGTTTTAGTCCGTTA 58.055 34.615 3.16 0.00 36.50 3.18
822 824 8.416329 ACTTCACTAAGAGTTTTAGTCCGTTAA 58.584 33.333 3.16 0.00 36.50 2.01
823 825 9.420551 CTTCACTAAGAGTTTTAGTCCGTTAAT 57.579 33.333 3.16 0.00 33.30 1.40
824 826 9.768662 TTCACTAAGAGTTTTAGTCCGTTAATT 57.231 29.630 3.16 0.00 33.30 1.40
825 827 9.768662 TCACTAAGAGTTTTAGTCCGTTAATTT 57.231 29.630 3.16 0.00 33.30 1.82
830 832 9.783081 AAGAGTTTTAGTCCGTTAATTTAAGGA 57.217 29.630 9.79 6.78 0.00 3.36
831 833 9.955102 AGAGTTTTAGTCCGTTAATTTAAGGAT 57.045 29.630 9.79 0.00 35.00 3.24
833 835 9.955102 AGTTTTAGTCCGTTAATTTAAGGATCT 57.045 29.630 9.79 5.05 35.00 2.75
834 836 9.983804 GTTTTAGTCCGTTAATTTAAGGATCTG 57.016 33.333 9.79 0.00 35.00 2.90
835 837 9.729281 TTTTAGTCCGTTAATTTAAGGATCTGT 57.271 29.630 9.79 0.00 35.00 3.41
836 838 9.729281 TTTAGTCCGTTAATTTAAGGATCTGTT 57.271 29.630 9.79 0.00 35.00 3.16
838 840 8.943909 AGTCCGTTAATTTAAGGATCTGTTAG 57.056 34.615 9.79 0.00 35.00 2.34
839 841 8.755977 AGTCCGTTAATTTAAGGATCTGTTAGA 58.244 33.333 9.79 0.00 35.00 2.10
840 842 9.032420 GTCCGTTAATTTAAGGATCTGTTAGAG 57.968 37.037 9.79 0.00 35.00 2.43
841 843 8.974238 TCCGTTAATTTAAGGATCTGTTAGAGA 58.026 33.333 9.79 0.00 34.25 3.10
842 844 9.765795 CCGTTAATTTAAGGATCTGTTAGAGAT 57.234 33.333 9.79 0.00 44.78 2.75
847 849 9.829507 AATTTAAGGATCTGTTAGAGATGTCAG 57.170 33.333 0.00 0.00 41.91 3.51
848 850 7.962995 TTAAGGATCTGTTAGAGATGTCAGT 57.037 36.000 0.00 0.00 41.91 3.41
849 851 6.865834 AAGGATCTGTTAGAGATGTCAGTT 57.134 37.500 0.00 0.00 41.91 3.16
850 852 6.865834 AGGATCTGTTAGAGATGTCAGTTT 57.134 37.500 0.00 0.00 41.91 2.66
851 853 7.251321 AGGATCTGTTAGAGATGTCAGTTTT 57.749 36.000 0.00 0.00 41.91 2.43
852 854 8.367660 AGGATCTGTTAGAGATGTCAGTTTTA 57.632 34.615 0.00 0.00 41.91 1.52
853 855 8.474025 AGGATCTGTTAGAGATGTCAGTTTTAG 58.526 37.037 0.00 0.00 41.91 1.85
854 856 8.254508 GGATCTGTTAGAGATGTCAGTTTTAGT 58.745 37.037 0.00 0.00 41.91 2.24
855 857 9.296400 GATCTGTTAGAGATGTCAGTTTTAGTC 57.704 37.037 0.00 0.00 41.91 2.59
856 858 7.603651 TCTGTTAGAGATGTCAGTTTTAGTCC 58.396 38.462 0.00 0.00 0.00 3.85
857 859 6.387465 TGTTAGAGATGTCAGTTTTAGTCCG 58.613 40.000 0.00 0.00 0.00 4.79
858 860 6.015688 TGTTAGAGATGTCAGTTTTAGTCCGT 60.016 38.462 0.00 0.00 0.00 4.69
859 861 5.470047 AGAGATGTCAGTTTTAGTCCGTT 57.530 39.130 0.00 0.00 0.00 4.44
860 862 6.585695 AGAGATGTCAGTTTTAGTCCGTTA 57.414 37.500 0.00 0.00 0.00 3.18
861 863 6.989659 AGAGATGTCAGTTTTAGTCCGTTAA 58.010 36.000 0.00 0.00 0.00 2.01
862 864 7.612677 AGAGATGTCAGTTTTAGTCCGTTAAT 58.387 34.615 0.00 0.00 0.00 1.40
863 865 8.095169 AGAGATGTCAGTTTTAGTCCGTTAATT 58.905 33.333 0.00 0.00 0.00 1.40
864 866 8.617290 AGATGTCAGTTTTAGTCCGTTAATTT 57.383 30.769 0.00 0.00 0.00 1.82
865 867 9.715121 AGATGTCAGTTTTAGTCCGTTAATTTA 57.285 29.630 0.00 0.00 0.00 1.40
866 868 9.968743 GATGTCAGTTTTAGTCCGTTAATTTAG 57.031 33.333 0.00 0.00 0.00 1.85
867 869 9.715121 ATGTCAGTTTTAGTCCGTTAATTTAGA 57.285 29.630 0.00 0.00 0.00 2.10
868 870 9.199982 TGTCAGTTTTAGTCCGTTAATTTAGAG 57.800 33.333 0.00 0.00 0.00 2.43
869 871 9.415544 GTCAGTTTTAGTCCGTTAATTTAGAGA 57.584 33.333 0.00 0.00 0.00 3.10
878 880 9.186837 AGTCCGTTAATTTAGAGATCTGTTAGA 57.813 33.333 0.00 0.00 0.00 2.10
879 881 9.453325 GTCCGTTAATTTAGAGATCTGTTAGAG 57.547 37.037 0.00 0.00 0.00 2.43
880 882 9.404848 TCCGTTAATTTAGAGATCTGTTAGAGA 57.595 33.333 0.00 0.00 34.25 3.10
881 883 9.453325 CCGTTAATTTAGAGATCTGTTAGAGAC 57.547 37.037 0.00 0.00 31.75 3.36
882 884 9.160576 CGTTAATTTAGAGATCTGTTAGAGACG 57.839 37.037 0.00 0.19 31.75 4.18
883 885 8.960075 GTTAATTTAGAGATCTGTTAGAGACGC 58.040 37.037 0.00 0.00 31.75 5.19
884 886 5.502153 TTTAGAGATCTGTTAGAGACGCC 57.498 43.478 0.00 0.00 31.75 5.68
885 887 2.303175 AGAGATCTGTTAGAGACGCCC 58.697 52.381 0.00 0.00 31.75 6.13
886 888 2.092103 AGAGATCTGTTAGAGACGCCCT 60.092 50.000 0.00 0.00 31.75 5.19
887 889 2.691011 GAGATCTGTTAGAGACGCCCTT 59.309 50.000 0.00 0.00 31.75 3.95
888 890 3.884091 GAGATCTGTTAGAGACGCCCTTA 59.116 47.826 0.00 0.00 31.75 2.69
889 891 4.279145 AGATCTGTTAGAGACGCCCTTAA 58.721 43.478 0.00 0.00 31.75 1.85
890 892 3.863142 TCTGTTAGAGACGCCCTTAAC 57.137 47.619 0.00 0.00 0.00 2.01
891 893 2.163010 TCTGTTAGAGACGCCCTTAACG 59.837 50.000 0.00 0.00 0.00 3.18
892 894 1.203052 TGTTAGAGACGCCCTTAACGG 59.797 52.381 0.00 0.00 34.00 4.44
893 895 1.474077 GTTAGAGACGCCCTTAACGGA 59.526 52.381 0.00 0.00 33.16 4.69
894 896 1.386533 TAGAGACGCCCTTAACGGAG 58.613 55.000 0.00 0.00 33.16 4.63
895 897 1.141234 GAGACGCCCTTAACGGAGG 59.859 63.158 0.00 0.00 36.52 4.30
911 913 3.155167 GGGGCACGGAGGGAGTAG 61.155 72.222 0.00 0.00 0.00 2.57
912 914 2.363925 GGGCACGGAGGGAGTAGT 60.364 66.667 0.00 0.00 0.00 2.73
924 926 7.015064 ACGGAGGGAGTAGTATATACCATTTT 58.985 38.462 9.32 0.00 0.00 1.82
993 995 1.092345 GCTCACAGGAAATCCGGAGC 61.092 60.000 20.13 20.13 45.08 4.70
994 996 0.462759 CTCACAGGAAATCCGGAGCC 60.463 60.000 11.34 11.57 42.08 4.70
995 997 1.452108 CACAGGAAATCCGGAGCCC 60.452 63.158 11.34 10.89 42.08 5.19
996 998 2.193248 CAGGAAATCCGGAGCCCC 59.807 66.667 11.34 10.50 42.08 5.80
997 999 2.042930 AGGAAATCCGGAGCCCCT 59.957 61.111 11.34 12.78 42.08 4.79
998 1000 1.619669 AGGAAATCCGGAGCCCCTT 60.620 57.895 11.34 0.00 42.08 3.95
999 1001 1.453928 GGAAATCCGGAGCCCCTTG 60.454 63.158 11.34 0.00 0.00 3.61
1000 1002 2.043953 AAATCCGGAGCCCCTTGC 60.044 61.111 11.34 0.00 41.71 4.01
1001 1003 3.662117 AAATCCGGAGCCCCTTGCC 62.662 63.158 11.34 0.00 42.71 4.52
1005 1007 4.033776 CGGAGCCCCTTGCCTCAA 62.034 66.667 0.00 0.00 42.71 3.02
1006 1008 2.440599 GGAGCCCCTTGCCTCAAA 59.559 61.111 0.00 0.00 42.71 2.69
1007 1009 1.228862 GGAGCCCCTTGCCTCAAAA 60.229 57.895 0.00 0.00 42.71 2.44
1008 1010 0.831711 GGAGCCCCTTGCCTCAAAAA 60.832 55.000 0.00 0.00 42.71 1.94
1095 1097 2.033602 TCCTGCTCGTCCTCGTCA 59.966 61.111 0.00 0.00 38.33 4.35
1175 1177 2.625352 CCTCTTCATCTCCTCCCACTCA 60.625 54.545 0.00 0.00 0.00 3.41
1286 1288 1.497309 ATTTCCTCCGCACCCAAGGA 61.497 55.000 0.00 0.00 37.42 3.36
1389 1394 2.604686 AGCTTCCCCACTCTGCGA 60.605 61.111 0.00 0.00 0.00 5.10
1461 1466 0.816825 CGTCGGGATCCTCTTCGGTA 60.817 60.000 12.58 0.00 0.00 4.02
1500 1505 0.909133 TGCTGCCTCCATGTACCTCA 60.909 55.000 0.00 0.00 0.00 3.86
1502 1507 1.133976 GCTGCCTCCATGTACCTCATT 60.134 52.381 0.00 0.00 34.09 2.57
1592 1597 1.219393 CGAGAGCCCCAAGAAGGTC 59.781 63.158 0.00 0.00 34.66 3.85
1643 1648 3.440173 CCTACGACGGTGGTAAGAACTAA 59.560 47.826 4.57 0.00 0.00 2.24
1644 1649 3.565905 ACGACGGTGGTAAGAACTAAG 57.434 47.619 0.00 0.00 0.00 2.18
1901 1911 4.945543 TCATGATGTTTGCTCTGTTGCTAT 59.054 37.500 0.00 0.00 0.00 2.97
1927 1937 0.179000 ATGTGACTCTTGGGGATCGC 59.821 55.000 0.06 0.06 0.00 4.58
1944 1954 5.531287 GGGATCGCTGGTAATCTGTTTATTT 59.469 40.000 1.84 0.00 0.00 1.40
1977 1987 5.708230 TGTTAAACATCGTTCTTAAGGGCAT 59.292 36.000 1.85 0.00 0.00 4.40
1994 2004 1.335324 GCATGCTTGTTTCTCGCAACT 60.335 47.619 11.37 0.00 37.20 3.16
2320 2330 6.479006 TCTTGATGATGAGAACCTTTGACAT 58.521 36.000 0.00 0.00 0.00 3.06
2345 2355 9.975218 ATGTTTATCCCATTTTACTGTTCTACT 57.025 29.630 0.00 0.00 0.00 2.57
2365 2434 9.629878 TTCTACTCCATTTAAACTACCAAAACA 57.370 29.630 0.00 0.00 0.00 2.83
2366 2435 9.802039 TCTACTCCATTTAAACTACCAAAACAT 57.198 29.630 0.00 0.00 0.00 2.71
2368 2437 8.472007 ACTCCATTTAAACTACCAAAACATCA 57.528 30.769 0.00 0.00 0.00 3.07
2397 2466 3.294038 TTAGGAACGGAGGGAGTAGAG 57.706 52.381 0.00 0.00 0.00 2.43
2444 2513 8.924511 AATTTAGTTCTTTGTCTTGGATCTGA 57.075 30.769 0.00 0.00 0.00 3.27
2509 2592 3.056322 CAGTTTTGTAGGTAGGCGGTACT 60.056 47.826 0.00 0.00 0.00 2.73
2516 2599 0.103026 GGTAGGCGGTACTTTACCCG 59.897 60.000 0.00 0.00 46.27 5.28
2573 2656 7.663501 ATTATATCTTGGGTAAGGGGAATGT 57.336 36.000 0.00 0.00 34.59 2.71
2648 2733 5.916318 AGAGAGAGAGAGTATGCAAAATGG 58.084 41.667 0.00 0.00 0.00 3.16
2794 2995 2.823747 TGTACTTACAGAGATGTGCCGT 59.176 45.455 0.00 0.00 0.00 5.68
2795 2996 2.370281 ACTTACAGAGATGTGCCGTG 57.630 50.000 0.00 0.00 0.00 4.94
2796 2997 1.893137 ACTTACAGAGATGTGCCGTGA 59.107 47.619 0.00 0.00 0.00 4.35
2797 2998 2.299013 ACTTACAGAGATGTGCCGTGAA 59.701 45.455 0.00 0.00 0.00 3.18
2798 2999 3.055819 ACTTACAGAGATGTGCCGTGAAT 60.056 43.478 0.00 0.00 0.00 2.57
2799 3000 1.730501 ACAGAGATGTGCCGTGAATG 58.269 50.000 0.00 0.00 0.00 2.67
2800 3001 1.276138 ACAGAGATGTGCCGTGAATGA 59.724 47.619 0.00 0.00 0.00 2.57
2801 3002 2.093288 ACAGAGATGTGCCGTGAATGAT 60.093 45.455 0.00 0.00 0.00 2.45
2802 3003 2.287103 CAGAGATGTGCCGTGAATGATG 59.713 50.000 0.00 0.00 0.00 3.07
2849 3050 5.363101 TGAAGATAGACAGACATGGCATTC 58.637 41.667 0.00 0.00 36.64 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.005037 TCGTCAGATGTGGTGTGCC 60.005 57.895 0.00 0.00 0.00 5.01
1 2 0.038251 TCTCGTCAGATGTGGTGTGC 60.038 55.000 0.00 0.00 0.00 4.57
2 3 2.438868 TTCTCGTCAGATGTGGTGTG 57.561 50.000 0.00 0.00 0.00 3.82
3 4 2.289072 CCTTTCTCGTCAGATGTGGTGT 60.289 50.000 0.00 0.00 0.00 4.16
4 5 2.029020 TCCTTTCTCGTCAGATGTGGTG 60.029 50.000 0.00 0.00 0.00 4.17
5 6 2.248248 TCCTTTCTCGTCAGATGTGGT 58.752 47.619 0.00 0.00 0.00 4.16
6 7 3.533606 ATCCTTTCTCGTCAGATGTGG 57.466 47.619 0.00 0.00 0.00 4.17
7 8 6.102663 AGTTAATCCTTTCTCGTCAGATGTG 58.897 40.000 0.00 0.00 0.00 3.21
8 9 6.071334 TGAGTTAATCCTTTCTCGTCAGATGT 60.071 38.462 0.00 0.00 0.00 3.06
9 10 6.333416 TGAGTTAATCCTTTCTCGTCAGATG 58.667 40.000 0.00 0.00 0.00 2.90
10 11 6.378564 TCTGAGTTAATCCTTTCTCGTCAGAT 59.621 38.462 0.00 0.00 34.44 2.90
11 12 5.710567 TCTGAGTTAATCCTTTCTCGTCAGA 59.289 40.000 0.00 0.00 36.45 3.27
12 13 5.802956 GTCTGAGTTAATCCTTTCTCGTCAG 59.197 44.000 0.00 0.00 0.00 3.51
13 14 5.477291 AGTCTGAGTTAATCCTTTCTCGTCA 59.523 40.000 0.00 0.00 0.00 4.35
14 15 5.956642 AGTCTGAGTTAATCCTTTCTCGTC 58.043 41.667 0.00 0.00 0.00 4.20
15 16 5.986501 AGTCTGAGTTAATCCTTTCTCGT 57.013 39.130 0.00 0.00 0.00 4.18
16 17 6.309251 GTGAAGTCTGAGTTAATCCTTTCTCG 59.691 42.308 0.00 0.00 0.00 4.04
17 18 7.155328 TGTGAAGTCTGAGTTAATCCTTTCTC 58.845 38.462 0.00 0.00 0.00 2.87
18 19 7.067496 TGTGAAGTCTGAGTTAATCCTTTCT 57.933 36.000 0.00 0.00 0.00 2.52
19 20 7.913674 ATGTGAAGTCTGAGTTAATCCTTTC 57.086 36.000 0.00 0.00 0.00 2.62
20 21 7.118390 CGAATGTGAAGTCTGAGTTAATCCTTT 59.882 37.037 0.00 0.00 0.00 3.11
21 22 6.591834 CGAATGTGAAGTCTGAGTTAATCCTT 59.408 38.462 0.00 0.00 0.00 3.36
22 23 6.071334 TCGAATGTGAAGTCTGAGTTAATCCT 60.071 38.462 0.00 0.00 0.00 3.24
23 24 6.035112 GTCGAATGTGAAGTCTGAGTTAATCC 59.965 42.308 0.00 0.00 0.00 3.01
24 25 6.035112 GGTCGAATGTGAAGTCTGAGTTAATC 59.965 42.308 0.00 0.00 0.00 1.75
25 26 5.869888 GGTCGAATGTGAAGTCTGAGTTAAT 59.130 40.000 0.00 0.00 0.00 1.40
26 27 5.227908 GGTCGAATGTGAAGTCTGAGTTAA 58.772 41.667 0.00 0.00 0.00 2.01
27 28 4.615223 CGGTCGAATGTGAAGTCTGAGTTA 60.615 45.833 0.00 0.00 0.00 2.24
28 29 3.654414 GGTCGAATGTGAAGTCTGAGTT 58.346 45.455 0.00 0.00 0.00 3.01
29 30 2.351835 CGGTCGAATGTGAAGTCTGAGT 60.352 50.000 0.00 0.00 0.00 3.41
30 31 2.095212 TCGGTCGAATGTGAAGTCTGAG 60.095 50.000 0.00 0.00 0.00 3.35
31 32 1.883926 TCGGTCGAATGTGAAGTCTGA 59.116 47.619 0.00 0.00 0.00 3.27
32 33 2.347697 TCGGTCGAATGTGAAGTCTG 57.652 50.000 0.00 0.00 0.00 3.51
33 34 3.243771 ACTTTCGGTCGAATGTGAAGTCT 60.244 43.478 19.04 0.00 39.80 3.24
34 35 3.057734 ACTTTCGGTCGAATGTGAAGTC 58.942 45.455 19.04 0.00 39.80 3.01
35 36 3.107642 ACTTTCGGTCGAATGTGAAGT 57.892 42.857 19.04 11.17 39.80 3.01
36 37 4.235360 ACTACTTTCGGTCGAATGTGAAG 58.765 43.478 24.79 19.48 40.88 3.02
37 38 4.247267 ACTACTTTCGGTCGAATGTGAA 57.753 40.909 24.79 12.00 40.88 3.18
38 39 3.928727 ACTACTTTCGGTCGAATGTGA 57.071 42.857 24.79 13.48 40.88 3.58
39 40 4.985044 AAACTACTTTCGGTCGAATGTG 57.015 40.909 24.79 18.80 40.88 3.21
40 41 5.776744 ACTAAACTACTTTCGGTCGAATGT 58.223 37.500 21.86 21.86 42.50 2.71
41 42 6.701432 AACTAAACTACTTTCGGTCGAATG 57.299 37.500 14.56 14.56 35.99 2.67
42 43 7.062722 GCTTAACTAAACTACTTTCGGTCGAAT 59.937 37.037 6.63 0.00 33.79 3.34
43 44 6.363357 GCTTAACTAAACTACTTTCGGTCGAA 59.637 38.462 1.33 1.33 0.00 3.71
44 45 5.858581 GCTTAACTAAACTACTTTCGGTCGA 59.141 40.000 0.00 0.00 0.00 4.20
45 46 5.860716 AGCTTAACTAAACTACTTTCGGTCG 59.139 40.000 0.00 0.00 0.00 4.79
46 47 7.649370 AAGCTTAACTAAACTACTTTCGGTC 57.351 36.000 0.00 0.00 0.00 4.79
47 48 8.363390 ACTAAGCTTAACTAAACTACTTTCGGT 58.637 33.333 7.74 0.00 0.00 4.69
48 49 8.754230 ACTAAGCTTAACTAAACTACTTTCGG 57.246 34.615 7.74 0.00 0.00 4.30
81 82 7.752686 GCACAACCAAACATAAAACACAAATTT 59.247 29.630 0.00 0.00 0.00 1.82
82 83 7.094634 TGCACAACCAAACATAAAACACAAATT 60.095 29.630 0.00 0.00 0.00 1.82
83 84 6.372659 TGCACAACCAAACATAAAACACAAAT 59.627 30.769 0.00 0.00 0.00 2.32
84 85 5.700832 TGCACAACCAAACATAAAACACAAA 59.299 32.000 0.00 0.00 0.00 2.83
85 86 5.237815 TGCACAACCAAACATAAAACACAA 58.762 33.333 0.00 0.00 0.00 3.33
86 87 4.820897 TGCACAACCAAACATAAAACACA 58.179 34.783 0.00 0.00 0.00 3.72
87 88 5.786401 TTGCACAACCAAACATAAAACAC 57.214 34.783 0.00 0.00 0.00 3.32
88 89 6.428159 AGTTTTGCACAACCAAACATAAAACA 59.572 30.769 12.02 0.00 38.52 2.83
89 90 6.836953 AGTTTTGCACAACCAAACATAAAAC 58.163 32.000 12.02 3.20 37.16 2.43
90 91 8.723942 ATAGTTTTGCACAACCAAACATAAAA 57.276 26.923 12.02 0.00 34.68 1.52
91 92 8.200792 AGATAGTTTTGCACAACCAAACATAAA 58.799 29.630 12.02 0.00 34.68 1.40
92 93 7.721402 AGATAGTTTTGCACAACCAAACATAA 58.279 30.769 12.02 0.00 34.68 1.90
93 94 7.283625 AGATAGTTTTGCACAACCAAACATA 57.716 32.000 12.02 0.00 34.68 2.29
94 95 6.160576 AGATAGTTTTGCACAACCAAACAT 57.839 33.333 12.02 4.40 34.68 2.71
95 96 5.590530 AGATAGTTTTGCACAACCAAACA 57.409 34.783 12.02 0.05 34.68 2.83
96 97 7.145323 ACATAGATAGTTTTGCACAACCAAAC 58.855 34.615 12.02 7.42 34.68 2.93
97 98 7.283625 ACATAGATAGTTTTGCACAACCAAA 57.716 32.000 12.02 0.00 33.21 3.28
98 99 6.892658 ACATAGATAGTTTTGCACAACCAA 57.107 33.333 12.02 1.71 0.00 3.67
99 100 6.892658 AACATAGATAGTTTTGCACAACCA 57.107 33.333 12.02 0.00 0.00 3.67
100 101 9.289303 CATAAACATAGATAGTTTTGCACAACC 57.711 33.333 12.02 0.00 39.65 3.77
101 102 9.840427 ACATAAACATAGATAGTTTTGCACAAC 57.160 29.630 7.67 7.67 39.65 3.32
128 129 7.670605 TCCCTATCCTCTTTATCGAGAAAAA 57.329 36.000 6.68 0.00 32.74 1.94
129 130 7.563924 TCTTCCCTATCCTCTTTATCGAGAAAA 59.436 37.037 6.68 1.35 32.74 2.29
130 131 7.014422 GTCTTCCCTATCCTCTTTATCGAGAAA 59.986 40.741 4.96 4.96 32.74 2.52
131 132 6.490721 GTCTTCCCTATCCTCTTTATCGAGAA 59.509 42.308 0.00 0.00 32.74 2.87
132 133 6.005198 GTCTTCCCTATCCTCTTTATCGAGA 58.995 44.000 0.00 0.00 32.74 4.04
133 134 6.007703 AGTCTTCCCTATCCTCTTTATCGAG 58.992 44.000 0.00 0.00 0.00 4.04
134 135 5.954757 AGTCTTCCCTATCCTCTTTATCGA 58.045 41.667 0.00 0.00 0.00 3.59
135 136 5.184287 GGAGTCTTCCCTATCCTCTTTATCG 59.816 48.000 0.00 0.00 37.53 2.92
136 137 6.599356 GGAGTCTTCCCTATCCTCTTTATC 57.401 45.833 0.00 0.00 37.53 1.75
172 173 5.049060 GGCCGCATGTGAATACATTGTAATA 60.049 40.000 8.11 0.00 45.01 0.98
173 174 4.261572 GGCCGCATGTGAATACATTGTAAT 60.262 41.667 8.11 0.00 45.01 1.89
181 182 1.793714 CGTTTGGCCGCATGTGAATAC 60.794 52.381 8.11 0.00 0.00 1.89
184 185 2.642129 CGTTTGGCCGCATGTGAA 59.358 55.556 8.11 0.00 0.00 3.18
197 198 3.210012 ATGGTGGAGCTGGGCGTTT 62.210 57.895 0.00 0.00 0.00 3.60
202 203 2.301346 GTTTATGATGGTGGAGCTGGG 58.699 52.381 0.00 0.00 0.00 4.45
206 207 3.825328 AGGATGTTTATGATGGTGGAGC 58.175 45.455 0.00 0.00 0.00 4.70
216 217 7.591795 GTGAGTAGTCGTCATAGGATGTTTATG 59.408 40.741 0.00 0.00 0.00 1.90
221 222 4.783055 AGTGAGTAGTCGTCATAGGATGT 58.217 43.478 0.00 0.00 0.00 3.06
222 223 7.441890 AATAGTGAGTAGTCGTCATAGGATG 57.558 40.000 0.00 0.00 0.00 3.51
223 224 6.369340 CGAATAGTGAGTAGTCGTCATAGGAT 59.631 42.308 8.80 0.00 42.83 3.24
253 254 0.817634 TCTTCACAAGGGTGGCAACG 60.818 55.000 0.00 0.00 45.32 4.10
261 262 2.158608 AGACAAGGGTTCTTCACAAGGG 60.159 50.000 0.00 0.00 0.00 3.95
265 266 2.370849 GGGTAGACAAGGGTTCTTCACA 59.629 50.000 0.00 0.00 0.00 3.58
266 267 2.290134 GGGGTAGACAAGGGTTCTTCAC 60.290 54.545 0.00 0.00 0.00 3.18
294 296 3.728385 ATATGGATTTAGGCAGGCCTC 57.272 47.619 17.57 2.16 44.43 4.70
318 320 4.478206 ACATCAGATTGTTGACGAGGAT 57.522 40.909 0.00 0.00 0.00 3.24
319 321 3.961480 ACATCAGATTGTTGACGAGGA 57.039 42.857 0.00 0.00 0.00 3.71
334 336 3.326297 TCCACACCACATGTTCTACATCA 59.674 43.478 0.00 0.00 40.64 3.07
341 343 0.598065 GCCTTCCACACCACATGTTC 59.402 55.000 0.00 0.00 40.64 3.18
345 347 1.683011 GCTATGCCTTCCACACCACAT 60.683 52.381 0.00 0.00 0.00 3.21
349 351 4.242602 GGCTATGCCTTCCACACC 57.757 61.111 0.73 0.00 46.69 4.16
368 370 2.314647 AATGCCGTGGTGTTCGACG 61.315 57.895 0.00 0.00 43.44 5.12
382 384 0.527565 ATCTGGAAACACCGCAATGC 59.472 50.000 0.00 0.00 42.61 3.56
399 401 3.554960 GCCTCCTTGTTTTGTGGGAAATC 60.555 47.826 0.00 0.00 0.00 2.17
411 413 4.102113 GCCATGTGCCTCCTTGTT 57.898 55.556 0.00 0.00 0.00 2.83
432 434 4.838152 GAGCATCGGAAGGCGGCA 62.838 66.667 13.08 0.00 34.54 5.69
433 435 4.537433 AGAGCATCGGAAGGCGGC 62.537 66.667 0.00 0.00 42.67 6.53
452 454 2.031624 GCATCAGGCAGGAGGAGAGTA 61.032 57.143 0.00 0.00 43.97 2.59
477 479 2.112475 CGCAGGAGACACTATCGAAG 57.888 55.000 0.00 0.00 0.00 3.79
506 508 1.844687 ATGGGAAAGCCAGAAAGAGC 58.155 50.000 0.00 0.00 35.15 4.09
508 510 3.004752 GCTATGGGAAAGCCAGAAAGA 57.995 47.619 0.00 0.00 33.73 2.52
535 537 1.068281 CAGGAGATCTGGACACGGATG 59.932 57.143 0.00 0.00 42.73 3.51
601 603 1.642037 CCTGCCTGTTGTGCGATCAG 61.642 60.000 0.00 0.00 0.00 2.90
602 604 1.672030 CCTGCCTGTTGTGCGATCA 60.672 57.895 0.00 0.00 0.00 2.92
603 605 3.044059 GCCTGCCTGTTGTGCGATC 62.044 63.158 0.00 0.00 0.00 3.69
604 606 3.058160 GCCTGCCTGTTGTGCGAT 61.058 61.111 0.00 0.00 0.00 4.58
605 607 4.560743 TGCCTGCCTGTTGTGCGA 62.561 61.111 0.00 0.00 0.00 5.10
606 608 4.332637 GTGCCTGCCTGTTGTGCG 62.333 66.667 0.00 0.00 0.00 5.34
607 609 2.908940 AGTGCCTGCCTGTTGTGC 60.909 61.111 0.00 0.00 0.00 4.57
608 610 1.228063 AGAGTGCCTGCCTGTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
609 611 1.072159 GAGAGTGCCTGCCTGTTGT 59.928 57.895 0.00 0.00 0.00 3.32
610 612 0.322277 ATGAGAGTGCCTGCCTGTTG 60.322 55.000 0.00 0.00 0.00 3.33
611 613 0.322277 CATGAGAGTGCCTGCCTGTT 60.322 55.000 0.00 0.00 0.00 3.16
612 614 1.298993 CATGAGAGTGCCTGCCTGT 59.701 57.895 0.00 0.00 0.00 4.00
613 615 2.113433 GCATGAGAGTGCCTGCCTG 61.113 63.158 0.00 0.00 39.18 4.85
614 616 2.271497 GCATGAGAGTGCCTGCCT 59.729 61.111 0.00 0.00 39.18 4.75
615 617 3.200593 CGCATGAGAGTGCCTGCC 61.201 66.667 0.00 0.00 42.06 4.85
616 618 2.578163 TACCGCATGAGAGTGCCTGC 62.578 60.000 0.00 0.00 42.06 4.85
617 619 0.108186 TTACCGCATGAGAGTGCCTG 60.108 55.000 0.00 0.00 42.06 4.85
618 620 0.833287 ATTACCGCATGAGAGTGCCT 59.167 50.000 0.00 0.00 42.06 4.75
619 621 1.221414 GATTACCGCATGAGAGTGCC 58.779 55.000 0.00 0.00 42.06 5.01
620 622 1.221414 GGATTACCGCATGAGAGTGC 58.779 55.000 0.00 0.00 41.65 4.40
621 623 1.541233 GGGGATTACCGCATGAGAGTG 60.541 57.143 0.00 0.00 46.50 3.51
622 624 0.759346 GGGGATTACCGCATGAGAGT 59.241 55.000 0.00 0.00 46.50 3.24
623 625 3.614399 GGGGATTACCGCATGAGAG 57.386 57.895 0.00 0.00 46.50 3.20
631 633 2.735237 GCGAGGAGGGGATTACCG 59.265 66.667 0.00 0.00 41.60 4.02
632 634 1.342672 TTGGCGAGGAGGGGATTACC 61.343 60.000 0.00 0.00 39.11 2.85
633 635 0.765510 ATTGGCGAGGAGGGGATTAC 59.234 55.000 0.00 0.00 0.00 1.89
634 636 1.518367 AATTGGCGAGGAGGGGATTA 58.482 50.000 0.00 0.00 0.00 1.75
635 637 0.631212 AAATTGGCGAGGAGGGGATT 59.369 50.000 0.00 0.00 0.00 3.01
636 638 0.106519 CAAATTGGCGAGGAGGGGAT 60.107 55.000 0.00 0.00 0.00 3.85
637 639 1.302949 CAAATTGGCGAGGAGGGGA 59.697 57.895 0.00 0.00 0.00 4.81
638 640 1.000896 ACAAATTGGCGAGGAGGGG 60.001 57.895 0.00 0.00 0.00 4.79
639 641 0.035056 AGACAAATTGGCGAGGAGGG 60.035 55.000 0.00 0.00 0.00 4.30
640 642 1.089920 CAGACAAATTGGCGAGGAGG 58.910 55.000 0.00 0.00 0.00 4.30
641 643 1.734465 GTCAGACAAATTGGCGAGGAG 59.266 52.381 0.00 0.00 0.00 3.69
642 644 1.808411 GTCAGACAAATTGGCGAGGA 58.192 50.000 0.00 0.00 0.00 3.71
643 645 0.443869 CGTCAGACAAATTGGCGAGG 59.556 55.000 0.41 0.00 45.85 4.63
644 646 1.126846 GACGTCAGACAAATTGGCGAG 59.873 52.381 11.55 0.00 45.85 5.03
645 647 1.144969 GACGTCAGACAAATTGGCGA 58.855 50.000 11.55 0.00 45.85 5.54
647 649 1.197721 CTGGACGTCAGACAAATTGGC 59.802 52.381 18.91 0.00 46.18 4.52
648 650 1.197721 GCTGGACGTCAGACAAATTGG 59.802 52.381 18.91 0.00 46.18 3.16
649 651 1.872952 TGCTGGACGTCAGACAAATTG 59.127 47.619 18.91 0.00 46.18 2.32
650 652 2.254546 TGCTGGACGTCAGACAAATT 57.745 45.000 18.91 0.00 46.18 1.82
651 653 2.254546 TTGCTGGACGTCAGACAAAT 57.745 45.000 18.91 0.00 46.18 2.32
652 654 2.143122 GATTGCTGGACGTCAGACAAA 58.857 47.619 18.91 5.19 46.18 2.83
653 655 1.344438 AGATTGCTGGACGTCAGACAA 59.656 47.619 18.91 16.98 46.18 3.18
654 656 0.969149 AGATTGCTGGACGTCAGACA 59.031 50.000 18.91 8.70 46.18 3.41
655 657 1.337260 ACAGATTGCTGGACGTCAGAC 60.337 52.381 18.91 5.94 46.60 3.51
656 658 0.969149 ACAGATTGCTGGACGTCAGA 59.031 50.000 18.91 1.77 46.60 3.27
657 659 1.067283 AGACAGATTGCTGGACGTCAG 60.067 52.381 18.91 13.54 46.60 3.51
658 660 0.969149 AGACAGATTGCTGGACGTCA 59.031 50.000 18.91 2.63 46.60 4.35
659 661 2.941453 TAGACAGATTGCTGGACGTC 57.059 50.000 7.13 7.13 46.60 4.34
660 662 2.497675 ACATAGACAGATTGCTGGACGT 59.502 45.455 0.00 0.00 46.60 4.34
661 663 3.170791 ACATAGACAGATTGCTGGACG 57.829 47.619 0.00 0.00 46.60 4.79
662 664 6.540189 ACATAAACATAGACAGATTGCTGGAC 59.460 38.462 0.00 0.00 46.60 4.02
663 665 6.653020 ACATAAACATAGACAGATTGCTGGA 58.347 36.000 0.00 0.00 46.60 3.86
664 666 6.932356 ACATAAACATAGACAGATTGCTGG 57.068 37.500 0.00 0.00 46.60 4.85
666 668 8.565896 TCAAACATAAACATAGACAGATTGCT 57.434 30.769 0.00 0.00 0.00 3.91
667 669 9.793252 ATTCAAACATAAACATAGACAGATTGC 57.207 29.630 0.00 0.00 0.00 3.56
684 686 9.793252 GATCAAAAGTAGCATGTATTCAAACAT 57.207 29.630 0.00 0.00 40.75 2.71
685 687 9.013229 AGATCAAAAGTAGCATGTATTCAAACA 57.987 29.630 0.00 0.00 0.00 2.83
692 694 9.956720 GCAATTTAGATCAAAAGTAGCATGTAT 57.043 29.630 0.00 0.00 0.00 2.29
693 695 9.177608 AGCAATTTAGATCAAAAGTAGCATGTA 57.822 29.630 0.00 0.00 0.00 2.29
694 696 8.059798 AGCAATTTAGATCAAAAGTAGCATGT 57.940 30.769 0.00 0.00 0.00 3.21
695 697 8.922058 AAGCAATTTAGATCAAAAGTAGCATG 57.078 30.769 0.00 0.00 0.00 4.06
696 698 9.362539 CAAAGCAATTTAGATCAAAAGTAGCAT 57.637 29.630 0.00 0.00 0.00 3.79
697 699 8.575589 TCAAAGCAATTTAGATCAAAAGTAGCA 58.424 29.630 0.00 0.00 0.00 3.49
698 700 8.970691 TCAAAGCAATTTAGATCAAAAGTAGC 57.029 30.769 0.00 0.00 0.00 3.58
793 795 8.583296 ACGGACTAAAACTCTTAGTGAAGTATT 58.417 33.333 2.01 0.00 35.54 1.89
794 796 8.120140 ACGGACTAAAACTCTTAGTGAAGTAT 57.880 34.615 2.01 0.00 35.54 2.12
795 797 7.516198 ACGGACTAAAACTCTTAGTGAAGTA 57.484 36.000 2.01 0.00 35.54 2.24
796 798 6.402456 ACGGACTAAAACTCTTAGTGAAGT 57.598 37.500 2.01 0.00 35.54 3.01
797 799 8.807667 TTAACGGACTAAAACTCTTAGTGAAG 57.192 34.615 2.01 0.00 35.54 3.02
798 800 9.768662 AATTAACGGACTAAAACTCTTAGTGAA 57.231 29.630 2.01 0.00 35.54 3.18
799 801 9.768662 AAATTAACGGACTAAAACTCTTAGTGA 57.231 29.630 2.01 0.00 35.54 3.41
804 806 9.783081 TCCTTAAATTAACGGACTAAAACTCTT 57.217 29.630 0.00 0.00 0.00 2.85
805 807 9.955102 ATCCTTAAATTAACGGACTAAAACTCT 57.045 29.630 6.22 0.00 0.00 3.24
807 809 9.955102 AGATCCTTAAATTAACGGACTAAAACT 57.045 29.630 6.22 0.00 0.00 2.66
808 810 9.983804 CAGATCCTTAAATTAACGGACTAAAAC 57.016 33.333 6.22 0.00 0.00 2.43
809 811 9.729281 ACAGATCCTTAAATTAACGGACTAAAA 57.271 29.630 6.22 0.00 0.00 1.52
810 812 9.729281 AACAGATCCTTAAATTAACGGACTAAA 57.271 29.630 6.22 0.00 0.00 1.85
813 815 8.755977 TCTAACAGATCCTTAAATTAACGGACT 58.244 33.333 6.22 4.54 0.00 3.85
814 816 8.937634 TCTAACAGATCCTTAAATTAACGGAC 57.062 34.615 6.22 3.00 0.00 4.79
815 817 8.974238 TCTCTAACAGATCCTTAAATTAACGGA 58.026 33.333 6.46 6.46 0.00 4.69
816 818 9.765795 ATCTCTAACAGATCCTTAAATTAACGG 57.234 33.333 0.00 0.00 37.24 4.44
821 823 9.829507 CTGACATCTCTAACAGATCCTTAAATT 57.170 33.333 0.00 0.00 40.20 1.82
822 824 8.986991 ACTGACATCTCTAACAGATCCTTAAAT 58.013 33.333 0.00 0.00 40.20 1.40
823 825 8.367660 ACTGACATCTCTAACAGATCCTTAAA 57.632 34.615 0.00 0.00 40.20 1.52
824 826 7.962995 ACTGACATCTCTAACAGATCCTTAA 57.037 36.000 0.00 0.00 40.20 1.85
825 827 7.962995 AACTGACATCTCTAACAGATCCTTA 57.037 36.000 0.00 0.00 40.20 2.69
826 828 6.865834 AACTGACATCTCTAACAGATCCTT 57.134 37.500 0.00 0.00 40.20 3.36
827 829 6.865834 AAACTGACATCTCTAACAGATCCT 57.134 37.500 0.00 0.00 40.20 3.24
828 830 8.254508 ACTAAAACTGACATCTCTAACAGATCC 58.745 37.037 0.00 0.00 40.20 3.36
829 831 9.296400 GACTAAAACTGACATCTCTAACAGATC 57.704 37.037 0.00 0.00 40.20 2.75
830 832 8.254508 GGACTAAAACTGACATCTCTAACAGAT 58.745 37.037 0.00 0.00 43.33 2.90
831 833 7.575155 CGGACTAAAACTGACATCTCTAACAGA 60.575 40.741 0.00 0.00 34.88 3.41
832 834 6.528423 CGGACTAAAACTGACATCTCTAACAG 59.472 42.308 0.00 0.00 36.58 3.16
833 835 6.015688 ACGGACTAAAACTGACATCTCTAACA 60.016 38.462 0.00 0.00 0.00 2.41
834 836 6.388278 ACGGACTAAAACTGACATCTCTAAC 58.612 40.000 0.00 0.00 0.00 2.34
835 837 6.585695 ACGGACTAAAACTGACATCTCTAA 57.414 37.500 0.00 0.00 0.00 2.10
836 838 6.585695 AACGGACTAAAACTGACATCTCTA 57.414 37.500 0.00 0.00 0.00 2.43
837 839 5.470047 AACGGACTAAAACTGACATCTCT 57.530 39.130 0.00 0.00 0.00 3.10
838 840 7.829378 ATTAACGGACTAAAACTGACATCTC 57.171 36.000 0.00 0.00 0.00 2.75
839 841 8.617290 AAATTAACGGACTAAAACTGACATCT 57.383 30.769 0.00 0.00 0.00 2.90
840 842 9.968743 CTAAATTAACGGACTAAAACTGACATC 57.031 33.333 0.00 0.00 0.00 3.06
841 843 9.715121 TCTAAATTAACGGACTAAAACTGACAT 57.285 29.630 0.00 0.00 0.00 3.06
842 844 9.199982 CTCTAAATTAACGGACTAAAACTGACA 57.800 33.333 0.00 0.00 0.00 3.58
843 845 9.415544 TCTCTAAATTAACGGACTAAAACTGAC 57.584 33.333 0.00 0.00 0.00 3.51
852 854 9.186837 TCTAACAGATCTCTAAATTAACGGACT 57.813 33.333 0.00 0.00 0.00 3.85
853 855 9.453325 CTCTAACAGATCTCTAAATTAACGGAC 57.547 37.037 0.00 0.00 0.00 4.79
854 856 9.404848 TCTCTAACAGATCTCTAAATTAACGGA 57.595 33.333 0.00 0.00 0.00 4.69
855 857 9.453325 GTCTCTAACAGATCTCTAAATTAACGG 57.547 37.037 0.00 0.00 32.08 4.44
856 858 9.160576 CGTCTCTAACAGATCTCTAAATTAACG 57.839 37.037 0.00 0.00 32.08 3.18
857 859 8.960075 GCGTCTCTAACAGATCTCTAAATTAAC 58.040 37.037 0.00 0.00 32.08 2.01
858 860 8.136165 GGCGTCTCTAACAGATCTCTAAATTAA 58.864 37.037 0.00 0.00 32.08 1.40
859 861 7.255520 GGGCGTCTCTAACAGATCTCTAAATTA 60.256 40.741 0.00 0.00 32.08 1.40
860 862 6.461788 GGGCGTCTCTAACAGATCTCTAAATT 60.462 42.308 0.00 0.00 32.08 1.82
861 863 5.010213 GGGCGTCTCTAACAGATCTCTAAAT 59.990 44.000 0.00 0.00 32.08 1.40
862 864 4.338682 GGGCGTCTCTAACAGATCTCTAAA 59.661 45.833 0.00 0.00 32.08 1.85
863 865 3.884091 GGGCGTCTCTAACAGATCTCTAA 59.116 47.826 0.00 0.00 32.08 2.10
864 866 3.136809 AGGGCGTCTCTAACAGATCTCTA 59.863 47.826 0.00 0.00 32.08 2.43
865 867 2.092103 AGGGCGTCTCTAACAGATCTCT 60.092 50.000 0.00 0.00 32.08 3.10
866 868 2.303175 AGGGCGTCTCTAACAGATCTC 58.697 52.381 0.00 0.00 32.08 2.75
867 869 2.445682 AGGGCGTCTCTAACAGATCT 57.554 50.000 0.00 0.00 32.08 2.75
868 870 4.361420 GTTAAGGGCGTCTCTAACAGATC 58.639 47.826 6.84 0.00 32.08 2.75
869 871 3.181489 CGTTAAGGGCGTCTCTAACAGAT 60.181 47.826 10.80 0.00 32.08 2.90
870 872 2.163010 CGTTAAGGGCGTCTCTAACAGA 59.837 50.000 10.80 0.00 0.00 3.41
871 873 2.527100 CGTTAAGGGCGTCTCTAACAG 58.473 52.381 10.80 2.77 0.00 3.16
872 874 1.203052 CCGTTAAGGGCGTCTCTAACA 59.797 52.381 0.36 0.00 35.97 2.41
873 875 1.474077 TCCGTTAAGGGCGTCTCTAAC 59.526 52.381 9.41 0.00 41.52 2.34
874 876 1.747355 CTCCGTTAAGGGCGTCTCTAA 59.253 52.381 9.41 0.00 41.52 2.10
875 877 1.386533 CTCCGTTAAGGGCGTCTCTA 58.613 55.000 9.41 0.00 41.52 2.43
876 878 1.321074 CCTCCGTTAAGGGCGTCTCT 61.321 60.000 9.41 0.00 41.52 3.10
877 879 1.141234 CCTCCGTTAAGGGCGTCTC 59.859 63.158 9.41 0.00 41.52 3.36
878 880 3.295800 CCTCCGTTAAGGGCGTCT 58.704 61.111 9.41 0.00 41.52 4.18
884 886 2.125269 CGTGCCCCTCCGTTAAGG 60.125 66.667 0.00 0.00 42.97 2.69
885 887 2.125269 CCGTGCCCCTCCGTTAAG 60.125 66.667 0.00 0.00 0.00 1.85
886 888 2.604079 TCCGTGCCCCTCCGTTAA 60.604 61.111 0.00 0.00 0.00 2.01
887 889 3.072468 CTCCGTGCCCCTCCGTTA 61.072 66.667 0.00 0.00 0.00 3.18
892 894 3.674050 TACTCCCTCCGTGCCCCTC 62.674 68.421 0.00 0.00 0.00 4.30
893 895 3.680196 TACTCCCTCCGTGCCCCT 61.680 66.667 0.00 0.00 0.00 4.79
894 896 2.578586 TACTACTCCCTCCGTGCCCC 62.579 65.000 0.00 0.00 0.00 5.80
895 897 0.469518 ATACTACTCCCTCCGTGCCC 60.470 60.000 0.00 0.00 0.00 5.36
896 898 2.283145 TATACTACTCCCTCCGTGCC 57.717 55.000 0.00 0.00 0.00 5.01
897 899 3.693578 GGTATATACTACTCCCTCCGTGC 59.306 52.174 12.54 0.00 0.00 5.34
898 900 4.914983 TGGTATATACTACTCCCTCCGTG 58.085 47.826 12.54 0.00 0.00 4.94
909 911 9.569122 GCCCAAGAAGAAAAATGGTATATACTA 57.431 33.333 12.54 7.12 0.00 1.82
911 913 7.255836 GGGCCCAAGAAGAAAAATGGTATATAC 60.256 40.741 19.95 4.14 0.00 1.47
912 914 6.780522 GGGCCCAAGAAGAAAAATGGTATATA 59.219 38.462 19.95 0.00 0.00 0.86
924 926 2.351276 GCGAGGGCCCAAGAAGAA 59.649 61.111 27.56 0.00 0.00 2.52
952 954 2.034685 GGAGGGTGCTCTTGTCAAAAAC 59.965 50.000 0.00 0.00 0.00 2.43
1008 1010 1.557099 GGGCTCCGGATTTCCTTTTT 58.443 50.000 3.57 0.00 0.00 1.94
1009 1011 0.324368 GGGGCTCCGGATTTCCTTTT 60.324 55.000 3.57 0.00 0.00 2.27
1010 1012 1.306633 GGGGCTCCGGATTTCCTTT 59.693 57.895 3.57 0.00 0.00 3.11
1011 1013 1.928567 TGGGGCTCCGGATTTCCTT 60.929 57.895 3.57 0.00 35.24 3.36
1012 1014 2.286121 TGGGGCTCCGGATTTCCT 60.286 61.111 3.57 0.00 35.24 3.36
1013 1015 2.124278 GTGGGGCTCCGGATTTCC 60.124 66.667 3.57 6.81 35.24 3.13
1014 1016 0.748367 GAAGTGGGGCTCCGGATTTC 60.748 60.000 3.57 0.00 35.24 2.17
1015 1017 1.303282 GAAGTGGGGCTCCGGATTT 59.697 57.895 3.57 0.00 35.24 2.17
1016 1018 2.680370 GGAAGTGGGGCTCCGGATT 61.680 63.158 3.57 0.00 35.24 3.01
1017 1019 3.090532 GGAAGTGGGGCTCCGGAT 61.091 66.667 3.57 0.00 35.24 4.18
1018 1020 4.332543 AGGAAGTGGGGCTCCGGA 62.333 66.667 2.93 2.93 35.24 5.14
1019 1021 3.787001 GAGGAAGTGGGGCTCCGG 61.787 72.222 0.00 0.00 35.24 5.14
1020 1022 3.003173 TGAGGAAGTGGGGCTCCG 61.003 66.667 0.00 0.00 35.24 4.63
1021 1023 2.671682 GTGAGGAAGTGGGGCTCC 59.328 66.667 0.00 0.00 0.00 4.70
1022 1024 2.266055 CGTGAGGAAGTGGGGCTC 59.734 66.667 0.00 0.00 0.00 4.70
1023 1025 4.021925 GCGTGAGGAAGTGGGGCT 62.022 66.667 0.00 0.00 0.00 5.19
1024 1026 4.021925 AGCGTGAGGAAGTGGGGC 62.022 66.667 0.00 0.00 0.00 5.80
1268 1270 2.150719 TCCTTGGGTGCGGAGGAAA 61.151 57.895 0.00 0.00 36.67 3.13
1402 1407 4.519437 CGCGCTCCTGGATGCTCA 62.519 66.667 16.14 0.00 0.00 4.26
1433 1438 2.758737 ATCCCGACGAGGACCACC 60.759 66.667 7.15 0.00 45.00 4.61
1481 1486 0.909133 TGAGGTACATGGAGGCAGCA 60.909 55.000 0.00 0.00 0.00 4.41
1500 1505 2.685364 CGGCGATTACGGACCAAAT 58.315 52.632 0.00 0.00 40.15 2.32
1592 1597 0.390340 CGGGGATGATGACATAGCCG 60.390 60.000 0.00 0.00 36.82 5.52
1669 1675 1.615392 GGCATATCATGGAACTTGCCC 59.385 52.381 12.24 0.00 42.96 5.36
1690 1696 0.170784 CACACAAACAGCAGCACACA 59.829 50.000 0.00 0.00 0.00 3.72
1901 1911 3.117701 TCCCCAAGAGTCACATCAACAAA 60.118 43.478 0.00 0.00 0.00 2.83
1977 1987 0.029300 GCAGTTGCGAGAAACAAGCA 59.971 50.000 6.55 0.00 39.33 3.91
1994 2004 2.293122 CTCCAAAGTTTCAACCATCGCA 59.707 45.455 0.00 0.00 0.00 5.10
2183 2193 7.415095 CGATAGCACCAGATAAAATTGTCCAAA 60.415 37.037 0.00 0.00 0.00 3.28
2185 2195 5.527214 CGATAGCACCAGATAAAATTGTCCA 59.473 40.000 0.00 0.00 0.00 4.02
2320 2330 9.444600 GAGTAGAACAGTAAAATGGGATAAACA 57.555 33.333 0.00 0.00 0.00 2.83
2345 2355 9.083422 TGATGATGTTTTGGTAGTTTAAATGGA 57.917 29.630 0.00 0.00 0.00 3.41
2365 2434 7.623677 TCCCTCCGTTCCTAAATATATGATGAT 59.376 37.037 0.00 0.00 0.00 2.45
2366 2435 6.957606 TCCCTCCGTTCCTAAATATATGATGA 59.042 38.462 0.00 0.00 0.00 2.92
2367 2436 7.093289 ACTCCCTCCGTTCCTAAATATATGATG 60.093 40.741 0.00 0.00 0.00 3.07
2368 2437 6.960542 ACTCCCTCCGTTCCTAAATATATGAT 59.039 38.462 0.00 0.00 0.00 2.45
2397 2466 2.355010 ACCTAGATCAGCATTTGGCC 57.645 50.000 0.00 0.00 46.50 5.36
2444 2513 7.408756 AATGCATACACCATTCACAGTTAAT 57.591 32.000 0.00 0.00 0.00 1.40
2509 2592 9.985730 AAACAAGATATAATATCGTCGGGTAAA 57.014 29.630 0.00 0.00 0.00 2.01
2573 2656 1.001974 CCTCTGAAACCGACATGGACA 59.998 52.381 0.00 0.00 42.00 4.02
2624 2709 5.984926 CCATTTTGCATACTCTCTCTCTCTC 59.015 44.000 0.00 0.00 0.00 3.20
2625 2710 5.163322 CCCATTTTGCATACTCTCTCTCTCT 60.163 44.000 0.00 0.00 0.00 3.10
2626 2711 5.055812 CCCATTTTGCATACTCTCTCTCTC 58.944 45.833 0.00 0.00 0.00 3.20
2627 2712 4.472833 ACCCATTTTGCATACTCTCTCTCT 59.527 41.667 0.00 0.00 0.00 3.10
2648 2733 8.638629 TCTCTCTTCTATAAAGCTATGGTACC 57.361 38.462 4.43 4.43 0.00 3.34
2736 2937 3.042682 TGGATGCCTATTCTTCCGGTTA 58.957 45.455 0.00 0.00 34.15 2.85
2794 2995 1.338960 TGCTTCAGCGACCATCATTCA 60.339 47.619 0.00 0.00 45.83 2.57
2795 2996 1.329906 CTGCTTCAGCGACCATCATTC 59.670 52.381 0.00 0.00 45.83 2.67
2796 2997 1.339438 ACTGCTTCAGCGACCATCATT 60.339 47.619 0.00 0.00 45.83 2.57
2797 2998 0.251354 ACTGCTTCAGCGACCATCAT 59.749 50.000 0.00 0.00 45.83 2.45
2798 2999 0.894835 TACTGCTTCAGCGACCATCA 59.105 50.000 0.00 0.00 45.83 3.07
2799 3000 1.565305 CTACTGCTTCAGCGACCATC 58.435 55.000 0.00 0.00 45.83 3.51
2800 3001 0.460987 GCTACTGCTTCAGCGACCAT 60.461 55.000 0.00 0.00 45.83 3.55
2801 3002 1.079819 GCTACTGCTTCAGCGACCA 60.080 57.895 0.00 0.00 45.83 4.02
2802 3003 3.787458 GCTACTGCTTCAGCGACC 58.213 61.111 0.00 0.00 45.83 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.