>input_sequence_67139
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-----------------------------------------CCTCAAAAAAAAAGGAAATCCGGAGCCCCACTTCCTCAC
GCTGCTCCACCGCCGTAGCCGCCATGGCCGACCGCCTCGTCCTGCTCGTCCTCGTCATCGCCGCCGCATCCCTCACCGTA
GCCTCCCCAGTCGCCGCGGCGCGTCCCTGCAACACCCTCTTCATCTCCTCCCACTCAGCCAACGCTAACCCCAGCAACGA
CCCCGACCACCGCTCCCCCCTCACCACGACGGTCGTCACCGTCTTCCGCATCCGCCGCTTCGGCCCCCATTTCCTCCGCA
CCCAAGGACACGCGCATCCCCACCTCAACCACCACCACCACCACC---TACACTCCATCCCCGCCAACATCCAGATCCGC
CGCCCCGAGCTCCCAGAGCTTCCCCACTCTGCGACCGGCGTTGCCGTGAGCATCCAGGAGCGCGTCAAGGACATCCTGGT
GGTCCTCGTCGGGATCCTCTTCGGTATCGGCTGCGGCGCGCTCACTGCTGCCTCCATGTACCTCATTTGGTCCGTAATCG
CCGGCCCCGGCGCGTCCTCCCACTACGACGAGCTCTACGGCGACGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGC
TATGTCATCATCCCCGGCGTCGAGGCCTACGACGGTGGTAAGAACTAAG-TCTAGGGTTTCCCTTTCCCAGGAGGGGCAA
GTTCCATGATATGCCTGTGTGCTGCTGTTTGTGTGTTGCGTAATAATCCGTAAAATGCCTCTGTGATGTGTAGTTGGGCC
GTAGTAGTGTTGTGCCCTCCATGTGAATACGCTCTTGATGCGCACTTATGCTGTGAAATGTGCTTCATTTCTAGTAATGA
ACTTATGGATGAATG-----------------------------------------------------------------
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>chr1B_1_TraesCS1B01G176700
GGCACACCACATCTGACGAGAAAGGATTAACTCAGACTTCACATTCGACCGAAAGTAGTTTAGTTAAGCTTAGTTTAGTT
TAAATTTGTGTTTTATGTTTGGTTGTGCAAAACTATCTATGTTTATGTTTTTTCTCGATAAAGAGGATAGGGAAGACTCC
CTCCACAGTTTCTATTACAATGTATTCACATGCGGCCAAACGCCCAGCTCCACCATCATAAACATCCTATGACGACTACT
CACTATTCGCCCACGTTGCCACCCTTGTGAAGAACCCTTGT-CTACCCCGCGTAGGAGGCCTGCCTAAATCCATATTCGA
TCCTCGTCAACAATCTGATGTAGAACATGTGGTGTGGAAGGCATAGCCCCGTCGAACACCACGGCATTGCGGTGTTTCCA
GATTTCCCACAAAACAAGGAGGCACATGGCCCTTGCCGCCTTCCGATGCTCTCTACTCTCCTCCTGCCTGATGCACCACT
TCGATAGTGTCTCCTGCGGTAGGGGGGGCTCTTTCTGGCTTTCCCATAGCCATGCACATCCGTGTCCAGATCTCCTGAGC
AAAGACACAACCAATCATGATGTGATTCATGGTTTCGTCGTGCTGATCGCACAACAGGCAGGCACTCTCATGCGGTAATC
CCCTCCTCGCCAATTTGTCTGACGTCCAGCAATCTGTCTATGTTTATGTTTGAATACATGCTACTTTTGATCTAAATTGC
TTTGATTAAATTGAAGTATACTTCGCTAAATTTAAGTAATCATTTGAAAAAGATAAACAATTAATGAAGTATATAATACT
TCACTAAGAGTTTTAGTCCGTTAATTTAAGGATCTGTTAGAGATGTCAGTTTTAGTCCGTTAATTTAGAGATCTGTTAGA
GACGCCCTTAACGGAGGGGCACGGAGGGAGTAGTATATACCATTTTTCTTCTTGGGCCCTCGCGGCCTCTCCGGTTTTTG
ACAAGAGCACCCTCCGCTCACAGGAAATCCGGAGCCCCTTGCCTCAAAAAAAAAGGAAATCCGGAGCCCCACTTCCTCAC
GCTGCTCCACCGCCGTAGCCGCCATGGCCGACCGCCTCGTCCTGCTCGTCCTCGTCATCGCCGCCGCATCCCTCACCGTA
GCCTCCCCAGTCGCCGCGGCGCGTCCCTGCAACACCCTCTTCATCTCCTCCCACTCAGCCAACGCTAACCCCAGCAACGA
CCCCGACCACCGCTCCCCCCTCACCACGACGGTCGTCACCGTCTTCCGCATCCGCCGCTTCGGCCCCCATTTCCTCCGCA
CCCAAGGACACGCGCATCCCCACCTCAACCACCACCACCACCACC---TACACTCCATCCCCGCCAACATCCAGATCCGC
CGCCCCGAGCTCCCAGAGCTTCCCCACTCTGCGACCGGCGTTGCCGTGAGCATCCAGGAGCGCGTCAAGGACATCCTGGT
GGTCCTCGTCGGGATCCTCTTCGGTATCGGCTGCGGCGCGCTCACTGCTGCCTCCATGTACCTCATTTGGTCCGTAATCG
CCGGCCCCGGCGCGTCCTCCCACTACGACGAGCTCTACGGCGACGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGC
TATGTCATCATCCCCGGCGTCGAGGCCTACGACGGTGGTAAGAACTAAG-TCTAGGGTTTCCCTTTCCCAGGAGGGGCAA
GTTCCATGATATGCCTGTGTGCTGCTGTTTGTGTGTTGCGTAATAATCCGTAAAATGCCTCTGTGATGTGTAGTTGGGCC
GTAGTAGTGTTGTGCCCTCCATGTGAATACGCTCTTGATGCGCACTTATGCTGTGAAATGTGCTTCATTTCTAGTAATGA
ACTTATGGATGAATGTCC----TGAAATGTTATAAGTATTCTGAAATTCATGATGTTTGCTCTGTTGCTATTTGTTGATG
TGACTCTTGGGGATCGCTGGTAATCTGTTTATTTGGTTAAATTGTTAAACATCGTTCTTAAGGGCATGCTTGTTTCTCGC
AACTGCGATGGTTGAAACTTTGGAGGTCTTACTGGTCTGGTGCTGTTATAACTCATATAAGCATTATGTTTACAAGTGCT
TACTGCCAACACATGCTAGCCGTTTACTTGTTTGGTCATATTCATCAGTTTGACCTATTCATTGACTTACCCCAAGTGTT
GATGACTATAAATGTACAATGTTTGCTTGTTATTTGGACAATTTTATCTGGTGCTATCGATTGTAGATGCGGCATAAAAT
TGCTCACCAGTAGCCTTGTACATTTGACAGGAAGGTCAGCTTGTACATTGACAAGTGGTAGATGTTCTTGATGATGAGAA
CCTTTGACATGTTTATCCCATTTTACTGTTCTACTCCAT-----------------------------------------
------------------TTAAACTACCAAAACATCATCATATATTTAGGAACGGAGGGAGTAGAGGCCAAATGCTGATC
TAGGTTAAATTTAGTTCTTTGTCTTGGATCTGATTAACTGTGAATGGTGTATGCATTCAGCATGGTG-------------
-CATAAGCACAGTTTTGTAGGTAGGCGGTACTTTACCCGACGATATTATATCTTGTTTTTAGCATAACGATATTATATCT
TGGGTAAGGGGAATGTGTCCATGTCGGTTTCAG--AGGTTCCTTCAAAATTATAATCTCATCTTTTTTGAGAGAGAGAGA
GTATGCAAAATGGGTACCATAGCTTTATA--GAAGAGAGAAAGTCATTATACAAGAATCTGTTGCCCCTAG-------CC
ACACCTCAGCCAGGGCAACCAT----------------------------------------------------------
-------------------------------------------------AAGGAAATAACCGGAAGAATAGGCATCCAGG
AGTTCACCAGTTTTGTACTTACAGAGATGTGCCGTGAATGATGGTCGCTGAAGCAGTAGCTCCACCTGAAGATAGACAGA
CATGGCATTC
>chr6D_139
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----------------------------------------------------------TAAAGAGGGTAGAGAAGACTCC
TTCCACGGTTTCAGTTACAGTTCAATTACAAGCTACCTAACGGCCACCTCCATCATAA-AATTGTCCTATGCTGACTACT
CACTACTCGCCCATGTTGCCATCCTGTTGAAGAACCCCTCAGCTACACCGCGTAGCAGGCCTGCCTGAATCCGTCTTCGT
CCCTCGTCAACAATCCGATGTAAAACCTGTCGTGTGAAAGGCATAGCTCGGTC-AACACCACAACATTGCGGTGTTTTCA
AATTTCCCACAAGACGGGGAGGCACATGGCCCTCACCGCCTTCCGATGCTCTCCACTTTCTTCCTGCATGATGAACCGGT
CAGGTAGTGTCTCTTGCGGTAGTGGGACC-CTTTCCGGCTTTCCCATAGTCTTGCAAATCCGTGTCCAGATCTACTGAGC
AAAGACACAACCAATCATGATGTGATTCATGGT-----------------------------------------------
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CTCCTCGTGCTGGTCACACAACGGGCAGACGCTTTGGTGCGGTAGTC---------------------------------
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--------------CCTTGCTAATCTGTCGGACGTCCAGCATCGGTC---------------------------------
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>chr6B_139
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----------------------------------------------------------TAAAGAGGATAGGAAAGACTCC
CTCCACGGTTTTGGTTACAGTTTAATTACAAGCGACCTAACAGCCACCTCCACCATAATAATTGTCCTATGCTGACTACA
CACTACTCGCCCATGTTGCCAA--------------CCTCAGCTACACCGCGTAGCAGGCCTGCCTGAATCCGTATTCGT
CCCTCGTCAACAATCCGATGTAAAACTTGTCGTGTAGAAGGCACAGCTCTGTCGAACACCACGACATTGTTGTGTTTCCA
AATTTCCCACAAGACGAGGAGGCACATGGCACTGACCGCCCTCCGATGCTCTCCGCTCTCTTCCTGCCTGATGCACCAGT
CAGGTAGTGCCTCCTGCAGTAGTGGGGCC-CTTTCCGGCTTTGCCATAGTCTTGTAAATCCGTGTCCAGATCTCATGGGA
AT-GACACAACCAATCATGATGTGATTCATGGT-----------------------------------------------
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GTCCTCGTGCTGGTCACACAACGGGCAGACGCTTTGGTCCGATAGTCCCC------------------------------
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-------------TCCTTGCTAATCTGTCGGACGTCCAGCATCAGTC---------------------------------
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>chr1A_900
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--------------------ACGGAGGGAGCA--ATGTACCATTTCTCTTCTTGGACCCTCGCGGCCTCTCCGCTTTTTG
ACAAGAGCACCCTCCGCTCACAGGAAATCCGGAGA-------------------------------CCCCACTTCCTCAC
GCTGCTCCACCGCCGTAGCCGCCATGGCCGACCGCCTCGTCCTGCTCGTCCTCGTCGTCGCCGCCGCATCCCCCACCGTA
GCCTCCCCAGTGGCCGCCGCGCGTCCCTGCAACACCCTCTTCATCTCCTCCCACTCGGCCAACGCTAACCCCAGCAACGA
CCCCGACCACCGCTCCCCCATCACCACGACGGTCATCACCGTCTTCCGCATCCGCCGCTTCGGCCCCCACTTCCTCCGCA
CCCAAGGCCACGCGCATCCCCACCTCAACCAGCACCACCACCACCACCTACACTCCATCCCCGCCAACATCCAGATTCGC
CGCCCCGAGCTCCCAGAGCCTCCCCACTCTGCGGCCGGCGTTGCCGCGAGCATCCAGGACCGCGTCAAGGACATCCTCGT
GGTCCTCGTCGGGATCCTCTTCGGTCTCGGCTGCGGCGCGCTCACCGCTGCCTCCATGTACCTCGTGTGGTCCGTAATCG
CCGGCCCCGGCGCGTCCTCCCACTACGACGAGCTCTACGGCGACGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTTGGC
TATGTCATCATCCCCGGCGTCGAGGCCTACGACGGTGGTAAGAACTAGATTCTAGGGTTTCCCTTTCCCAGGAGTGGCAA
GTTCCATGATATGCCCGTGTGCTGCTGTTTGTGTGTTGCGTAATAATCCGTAAAATGCCTCTGTGATATGTAGTTGGGCC
GTAGTAGTGTTGTGCCCTCCATGTGAATACGCTCTTGATGCGCACTTATGCTGTGAG-TGTGCTTCATTTCTAGTAATGA
ACTTATGGATGAATGTCC----TGAAATGTTATAAGTATTCTGAAATTCATAATGTTTGCTCTGTTGCTAATTGTTGATG
TGACACTTGGGGGTCGTTGGTAATCTGTTTATTAGGTTAAATTGTTAAACATCGTTCTTAAGGGCACGCTTGTTTCTCGC
AACCGCCATGGTTGAAACTTTGGAGGTCTTACTGGTCTGGTGCTGTTATAACTCATATAAGCATTTAT-----AAGTGCT
TACTGCCAACACATGCTAGCCGTTTACTTGTTTGGTCATATTCATCAGTTTTACCTATTCATTGACTTACCCCAAGTGCT
GATGACTATAAATGTACAATGTTTGCTTGTTAATCGGACAATTTTATCTGGTGCTATCGATTCTAGATGCGGCATAAAAT
TGCTCACCAGTAGCCTTGTACATTTGACAGGAAGGTCAGCTTGTATATTGACAAGTGGTAGATGTTCTTGATGATGAGAA
CCTTTGACAAGTTTATCCCATTTTACTGTTCTACCCCTCCGTTCCTAAATATATGACGTTTTGGTAGTTTAAATTATATG
ACGTTTTGGTAGTTTAAATTAAACTACCAAAATG---TCATATATTTAGGAACGGAGGGAGTAGAAGCCAAATGCTGATC
TAGGTTAAATTTAGTTCTTTGTCTTGGATCTGCTTAACTGTGAATGGTGTATGCATTCAGCATGGTG-------------
-CATAAGCACAGTTTTGTAGGTAGGCGGTAC-TTACCCAACGATATTATATCTTGTTTTTAGCATAACGATGTTATATCT
TGGGTAAGGGGAATGCGTCCATGTCGGTTTCAGCAATGTTCCTTCAAAATTACAATCTCATCTTTTTTTTTTGAGAGAGA
GTATGCAAAATGCGTACCATAGCTTTATA--GAAGAGAGAAAGTCATTATACAAGAATCTGTTGCCCCTAG-------CC
ACACCTCAGCCAGGGCAACCATAGCTCCTACTCCTGAAAAAGAAACTACTCCACACAGTCGTTGTATACCATTAGTTCCG
GGCATAATTGATTCGATACACGGGCCAATAGGCTGAAGAGGAGTACAACAAGGAAAGAACCGGAAGAATAGGCATCCAGG
AGTTCACCAGTTTTGTACTTACAGAGATGTGCCG----------------------------------------------
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>chr1D_900
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--------------------ACGGAGGGAGCA--GTATACCATTTCTCTTCTTGGACCCTCGCGGCCTCTCCGCTTTTTG
ACAAGAGCACCCTCCGCTCACAGGAAATCCGGAGA-------------------------------CTCCACTTCCTCAC
GCTGCTCCCCCGCCGTAGCCGCCATGGCCGACCGCCTCGTCCTGCTCGTTCTCGTCGTTGCCGCCGCATCCCTCACCGTA
GCCTCCCCAGTCGCCGCCGCGCGTCCCTGCAACACCCTCTTCATCTCCTCCCACTCGGCCAACGCTAACCCCAGCAACGA
CCCCGACCACCGCTCCCCCCTCACCACGACGGTCGTCACCGTCTTCCGCATCCGCCGCTTCGGCCCCCACTTCCTCCGCA
CCCAAGGCCACGCGCACCCCCACCTCAACCACCACCACCGCCACCACCTACACTCCATCCCCGCCAACATCCAGATCCGC
CGCCCTGAGCTCCCAGAGCTTCCCCACTCCGCGGCCGGCGTTGCCGCGAGCATCCAGGAGCGCGTTAAGGACATCCTCGT
GGTCCTCGTCGGGATCCTCTTCGGTCTCGGCTGCGGCGCCCTCACCGCTGCCTCCATGTACCTCGTGTGGTCCGTAATCG
CCGGCCCCGGCGCGTCCTCCCACTACGACGAGCTCTACGGCGACGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTTGGC
TATGTCATCATCCCCGGCGTCGAGGCCTACGACGGTGGTAAGAACTAGATTCTAGGGTTTCCCTTTCCCAGGAGTGGCAA
GTTCCATGATATGCCAGTGTGCTGCTGTTTGTGTGTTGCGTAATAATCCGTAAAATGCCTCTGTGATGTGTAGTTGGGCC
GTAGTAGTTCTGTGCCCTCCATGTGAATACGCTCTTGATGCGAACTTATGCTGTGAAATGTGCTTCGTTTCTAGTAATGA
ACTTATGGATGAATGTCCGTCCTGAAATGTTATGAGTATTCTGAAATTCATGATGTTTGCTCTGTTGCTAATTGTTAATG
TGACTCTTGGGGATCGTTGGTAATCTGTTTATTAGGTTAAATTGTCAAACATTGTTCTTAAGGGCACGCCTGTTTCTCGC
AACCGTGATGGTTGAAACTTTGGTGGTCTTACTGGTCTGGTGCTGTTATAACTTATATAAGCAT-----TTACAAGTGTA
TACTGCCAACACATGCTAGGCGTTTACTTGTTTGGTCATATTCATCAGTTTGACCTATTCATTGACTTACCCGAAGTGTT
GATGACTATAAATGTACAATGTTTGCTTGCTAATGGGACACGTTTGTCTCGTGCTATCGATTGTAGATGCGGCATAAAAT
TGCTTACCAGTAGCCTTGTACATTTGACACGAAGGTCAGCTTGTACATTGACAAGTGGTAGATGTTCTTGATG-------
--TTTGACAAGTTTA----------------------AT-----------------------------------------
------------------TTGAACTACCAAAGCG---TCATATATTTAGGAACGGAGGGAGTAGAAGCCAAATGCTGATC
TAGGTTAAATTTAGTTCTTTATCTTGTATCTGCTTAACTGTGAATGGTGTATGCATTCAGCATGGTGCACACATGCACGT
GCATAAGCACAGTTTTGTAGGTAGGCGGTAC-TTACCCAACGATATTCTATCTTGTTTTTAGCATAACGATATTATATCT
TGGGTAAGGGGAATGCGTCCATGTCGGTTTCAGCAAGGTTCCTTCAAAATTATAATCTCATCTTTTTTTT----GAGAGA
GTATGCAAAATGCGTACCATAGCTTTATACAGAAGAGAGAAAGTCAATATACAAGGATCTGTTGCCCCTACCAGTCTACC
ACACCTCAGCCAGGGCAACCATAGCTCA---TCCTGAAAAGGAAACTACTCCTCACAGTCGCTGTATACCATTAGTTCCG
GGCATAATTGATTTGATACACGGGCTGAAAGGCCGCAGAGCAGTACAACAAAGAAAGAACCGGAAGAATAGGCATCCAGG
AGTTCACCAGTTCTGTACATACAGAGATG--------------GTCGCTGAAGCAGTAGCTCCACCTGAAGATAGACAGA
CATGGCATT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------S-----SS-----S-S--S-S---S---S--S----S---S---------S----SSS-------SS-------
-----S-------S-------S---SS----------S-SS-----S--------S----------S-----S------S
S--------------S------S---S---S----------------S-S-------------S----------------
S-----------S--S-----------------SS------------------S------S-----------------S-
SS-S------------------S----S-S-----S-------------S-S----S-----------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----------S-SS-----------S---------S-----------------S------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
--------------------------------------------------------S-----------------------
-----------------S--------------------------------------S-----------------------
---------------------------------------------------------------------S----------
-------S------------------------------------------------------------------------
---------------------------------S------------S------------------------------S--
-------------------------S-------------------S------------------S-S-------------
----------------------------------------------------------------------------S---
-----------------------------------------------SS-------------------------S-----
---------------S----------------------------------------------------------------
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----------------------------------------------------------------------S---------
----------------S----------------S--------------------------------S-------------
---S-------------------------------------------------------------SSSS-----------
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--------------------------------S-S---------------------------------------------
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---------S------------------------S---------------------------------------------
---------------------------------SSSS----------------------------S--------------
--------------------------------S-----------------------------------------------
-------------------------------S------S-----------------------------------------
---------------S----------------------------------------------------SSSS--------
------------S-------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
----------------------------------SSSSSSSSS-------------------------------------
---------S
>forward_606
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--------------------------TCATGGTTTCGTCGTGCTGA----------------------------------
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>reverse_1987
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------------------------------------------------------------------TGCTTGTTTCTCGC
AACTGC--------------------------------------------------------------------------
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