Multiple sequence alignment - TraesCS1B01G174200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G174200 chr1B 100.000 2465 0 0 1 2465 312918741 312921205 0.000000e+00 4553.0
1 TraesCS1B01G174200 chr1B 90.667 75 6 1 1818 1891 151118106 151118180 5.610000e-17 99.0
2 TraesCS1B01G174200 chr1B 90.667 75 6 1 1818 1891 151134985 151135059 5.610000e-17 99.0
3 TraesCS1B01G174200 chr1A 92.130 1385 43 27 477 1828 281649563 281650914 0.000000e+00 1893.0
4 TraesCS1B01G174200 chr1A 93.275 461 22 4 24 480 281649075 281649530 0.000000e+00 671.0
5 TraesCS1B01G174200 chr1A 87.555 458 45 6 1894 2343 281650909 281651362 1.010000e-143 520.0
6 TraesCS1B01G174200 chr1A 87.500 80 9 1 1813 1891 504269073 504269152 9.390000e-15 91.6
7 TraesCS1B01G174200 chr1D 90.760 1277 58 26 463 1706 218895340 218896589 0.000000e+00 1650.0
8 TraesCS1B01G174200 chr1D 95.708 466 16 1 7 472 218894646 218895107 0.000000e+00 747.0
9 TraesCS1B01G174200 chr3B 97.656 128 3 0 2338 2465 252582935 252582808 1.150000e-53 220.0
10 TraesCS1B01G174200 chr3B 97.638 127 3 0 2339 2465 39950525 39950651 4.130000e-53 219.0
11 TraesCS1B01G174200 chr3B 97.638 127 3 0 2339 2465 65234949 65234823 4.130000e-53 219.0
12 TraesCS1B01G174200 chr3B 97.638 127 3 0 2339 2465 252576114 252575988 4.130000e-53 219.0
13 TraesCS1B01G174200 chr7B 96.899 129 4 0 2337 2465 415175558 415175430 1.480000e-52 217.0
14 TraesCS1B01G174200 chr2B 96.212 132 5 0 2334 2465 211357071 211356940 1.480000e-52 217.0
15 TraesCS1B01G174200 chr2B 90.683 161 10 5 2308 2465 123292712 123292870 2.480000e-50 209.0
16 TraesCS1B01G174200 chr5B 95.556 135 5 1 2332 2465 345632686 345632820 5.340000e-52 215.0
17 TraesCS1B01G174200 chr5B 94.853 136 7 0 2330 2465 64292591 64292456 1.920000e-51 213.0
18 TraesCS1B01G174200 chrUn 91.549 71 6 0 1821 1891 15864348 15864278 5.610000e-17 99.0
19 TraesCS1B01G174200 chrUn 89.610 77 8 0 1815 1891 40599747 40599823 5.610000e-17 99.0
20 TraesCS1B01G174200 chr2A 91.549 71 6 0 1821 1891 197224762 197224692 5.610000e-17 99.0
21 TraesCS1B01G174200 chr2A 91.549 71 6 0 1821 1891 632921972 632921902 5.610000e-17 99.0
22 TraesCS1B01G174200 chr4D 91.429 70 6 0 1822 1891 488960874 488960943 2.020000e-16 97.1
23 TraesCS1B01G174200 chr7A 89.474 76 7 1 1817 1891 214312945 214312870 7.260000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G174200 chr1B 312918741 312921205 2464 False 4553.0 4553 100.000000 1 2465 1 chr1B.!!$F3 2464
1 TraesCS1B01G174200 chr1A 281649075 281651362 2287 False 1028.0 1893 90.986667 24 2343 3 chr1A.!!$F2 2319
2 TraesCS1B01G174200 chr1D 218894646 218896589 1943 False 1198.5 1650 93.234000 7 1706 2 chr1D.!!$F1 1699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.175073 ATGAGGAAAGGCGACGGTAC 59.825 55.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1750 0.392998 AAGTCCATCCATCCACACGC 60.393 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 3.136123 CAGGCGCCATTCACCTGG 61.136 66.667 31.54 1.87 45.97 4.45
130 131 5.048713 GGGCGTAAATTAAAGATGGATGAGG 60.049 44.000 0.00 0.00 0.00 3.86
144 145 0.175073 ATGAGGAAAGGCGACGGTAC 59.825 55.000 0.00 0.00 0.00 3.34
193 194 1.508088 CTGTTCAATTGCTCCCGGC 59.492 57.895 0.00 0.00 42.22 6.13
234 235 3.364062 CTTGCTCTTGAGTACGTATCGG 58.636 50.000 0.00 0.00 0.00 4.18
300 301 2.809706 CAAATCATGCCCCTGCCG 59.190 61.111 0.00 0.00 36.33 5.69
374 375 3.288092 GTTTCTCACTTTTCAGGGTGGT 58.712 45.455 0.00 0.00 34.57 4.16
375 376 4.080243 TGTTTCTCACTTTTCAGGGTGGTA 60.080 41.667 0.00 0.00 34.57 3.25
376 377 4.993705 TTCTCACTTTTCAGGGTGGTAT 57.006 40.909 0.00 0.00 34.57 2.73
377 378 6.183361 TGTTTCTCACTTTTCAGGGTGGTATA 60.183 38.462 0.00 0.00 34.57 1.47
401 402 3.114606 TGAGGATGAAGCTGGGTGATTA 58.885 45.455 0.00 0.00 0.00 1.75
514 760 2.096248 TGCAAGTTCTTGGTCGGTTTT 58.904 42.857 13.35 0.00 0.00 2.43
605 851 1.079503 GCTTGAAAGGCGTCCAGTAG 58.920 55.000 0.00 0.00 0.00 2.57
621 867 6.308282 CGTCCAGTAGAATAAACAGTGTTCTC 59.692 42.308 9.40 6.77 34.33 2.87
642 888 5.241506 TCTCAAATACTTGTTGGGAAAGCTG 59.758 40.000 0.00 0.00 32.50 4.24
650 896 2.886523 TGTTGGGAAAGCTGTCATTGAG 59.113 45.455 6.17 0.00 0.00 3.02
651 897 1.538047 TGGGAAAGCTGTCATTGAGC 58.462 50.000 6.17 0.00 36.65 4.26
652 898 0.813821 GGGAAAGCTGTCATTGAGCC 59.186 55.000 6.17 0.00 37.12 4.70
653 899 1.615384 GGGAAAGCTGTCATTGAGCCT 60.615 52.381 6.17 0.00 37.12 4.58
654 900 1.742268 GGAAAGCTGTCATTGAGCCTC 59.258 52.381 6.17 0.00 37.12 4.70
655 901 2.617532 GGAAAGCTGTCATTGAGCCTCT 60.618 50.000 6.17 0.00 37.12 3.69
687 933 6.770785 AGCCAGTCTCAGTAAACAAACATTAA 59.229 34.615 0.00 0.00 0.00 1.40
711 957 5.364157 AGTTAAGGTTTGTGTCTCACTCTCT 59.636 40.000 1.72 0.00 35.11 3.10
712 958 4.329462 AAGGTTTGTGTCTCACTCTCTC 57.671 45.455 1.72 0.00 35.11 3.20
724 970 5.122239 GTCTCACTCTCTCGATCATATCCTG 59.878 48.000 0.00 0.00 0.00 3.86
761 1008 2.555732 AATGGACATCCCCTGCATTT 57.444 45.000 0.00 0.00 34.29 2.32
914 1167 1.677052 CGTACCTCTTCCACCTAGCTC 59.323 57.143 0.00 0.00 0.00 4.09
915 1168 2.684334 CGTACCTCTTCCACCTAGCTCT 60.684 54.545 0.00 0.00 0.00 4.09
947 1204 3.658398 CACAAGGGGTGCTCAAGAT 57.342 52.632 0.00 0.00 41.36 2.40
948 1205 1.171308 CACAAGGGGTGCTCAAGATG 58.829 55.000 0.00 0.00 41.36 2.90
1032 1292 0.668706 CGTTGGTGGTGCTCTCTCTG 60.669 60.000 0.00 0.00 0.00 3.35
1036 1296 1.741032 GTGGTGCTCTCTCTGCTGC 60.741 63.158 0.00 0.00 0.00 5.25
1044 1304 3.388703 CTCTCTGCTGCTCCTGCCC 62.389 68.421 0.00 0.00 38.71 5.36
1476 1736 3.304928 CGAATGCTTAATGGGCTGGATTC 60.305 47.826 0.00 0.00 35.10 2.52
1479 1739 1.750682 GCTTAATGGGCTGGATTCGGT 60.751 52.381 0.00 0.00 0.00 4.69
1480 1740 2.486548 GCTTAATGGGCTGGATTCGGTA 60.487 50.000 0.00 0.00 0.00 4.02
1481 1741 2.922740 TAATGGGCTGGATTCGGTAC 57.077 50.000 0.00 0.00 0.00 3.34
1502 1762 2.819154 CGCATGCGTGTGGATGGA 60.819 61.111 31.33 0.00 43.52 3.41
1503 1763 2.182181 CGCATGCGTGTGGATGGAT 61.182 57.895 31.33 0.00 43.52 3.41
1504 1764 1.357690 GCATGCGTGTGGATGGATG 59.642 57.895 0.00 0.00 43.52 3.51
1505 1765 2.027325 CATGCGTGTGGATGGATGG 58.973 57.895 0.00 0.00 39.99 3.51
1506 1766 0.464193 CATGCGTGTGGATGGATGGA 60.464 55.000 0.00 0.00 39.99 3.41
1576 1836 8.443160 AGTGTGTAAATTATCAGTGTTTCATCG 58.557 33.333 0.00 0.00 0.00 3.84
1598 1858 0.168128 GAGCGACGGGAAAATGGTTG 59.832 55.000 0.00 0.00 0.00 3.77
1607 1872 0.313672 GAAAATGGTTGCAGGCGACA 59.686 50.000 13.31 0.00 32.12 4.35
1719 2005 5.065474 GTGAAATGCACCTATAGGCGTTAAA 59.935 40.000 19.25 3.22 41.78 1.52
1728 2014 7.801783 GCACCTATAGGCGTTAAATTATTTCAC 59.198 37.037 19.25 0.00 39.32 3.18
1762 2048 5.576563 TTTATCCCTCAACTCAGAAACCA 57.423 39.130 0.00 0.00 0.00 3.67
1772 2074 5.710099 TCAACTCAGAAACCACACTTCTTTT 59.290 36.000 0.00 0.00 30.58 2.27
1819 2121 5.580691 CGTGCAATGAATAGTGAGACCTTTA 59.419 40.000 0.00 0.00 0.00 1.85
1823 2125 8.296713 TGCAATGAATAGTGAGACCTTTAAAAC 58.703 33.333 0.00 0.00 0.00 2.43
1830 2132 9.682465 AATAGTGAGACCTTTAAAACTATTCCC 57.318 33.333 12.06 0.00 36.56 3.97
1831 2133 7.331089 AGTGAGACCTTTAAAACTATTCCCT 57.669 36.000 0.00 0.00 0.00 4.20
1832 2134 7.395617 AGTGAGACCTTTAAAACTATTCCCTC 58.604 38.462 0.00 0.00 0.00 4.30
1833 2135 7.017254 AGTGAGACCTTTAAAACTATTCCCTCA 59.983 37.037 0.00 0.00 0.00 3.86
1834 2136 7.334671 GTGAGACCTTTAAAACTATTCCCTCAG 59.665 40.741 0.00 0.00 0.00 3.35
1835 2137 7.017254 TGAGACCTTTAAAACTATTCCCTCAGT 59.983 37.037 0.00 0.00 0.00 3.41
1836 2138 7.756614 AGACCTTTAAAACTATTCCCTCAGTT 58.243 34.615 0.00 0.00 36.56 3.16
1837 2139 8.225416 AGACCTTTAAAACTATTCCCTCAGTTT 58.775 33.333 0.00 0.00 44.72 2.66
1851 2153 9.981460 ATTCCCTCAGTTTTAAAATAGATGACT 57.019 29.630 3.52 0.00 0.00 3.41
1852 2154 9.449719 TTCCCTCAGTTTTAAAATAGATGACTC 57.550 33.333 3.52 0.00 0.00 3.36
1853 2155 8.602424 TCCCTCAGTTTTAAAATAGATGACTCA 58.398 33.333 3.52 0.00 0.00 3.41
1854 2156 9.231297 CCCTCAGTTTTAAAATAGATGACTCAA 57.769 33.333 3.52 0.00 0.00 3.02
1910 2212 8.350722 TCATCTACGAGTATTTATGTGTTCTCC 58.649 37.037 0.00 0.00 0.00 3.71
1928 2230 1.487976 TCCTAGAATGCTCAAGGGCTG 59.512 52.381 0.00 0.00 0.00 4.85
1933 2235 2.505364 AATGCTCAAGGGCTGGGGAC 62.505 60.000 0.00 0.00 0.00 4.46
1939 2241 1.306654 AAGGGCTGGGGACACGATA 60.307 57.895 0.00 0.00 35.60 2.92
1944 2246 1.612199 GGCTGGGGACACGATAACAAA 60.612 52.381 0.00 0.00 35.60 2.83
1945 2247 2.365582 GCTGGGGACACGATAACAAAT 58.634 47.619 0.00 0.00 35.60 2.32
1946 2248 2.097466 GCTGGGGACACGATAACAAATG 59.903 50.000 0.00 0.00 35.60 2.32
1947 2249 3.343617 CTGGGGACACGATAACAAATGT 58.656 45.455 0.00 0.00 35.60 2.71
1975 2277 1.675483 TGTGAGTTGTGACCATGTTGC 59.325 47.619 0.00 0.00 0.00 4.17
1986 2288 1.585267 CCATGTTGCGTTAGCTGCCA 61.585 55.000 0.00 0.00 45.42 4.92
1987 2289 0.452987 CATGTTGCGTTAGCTGCCAT 59.547 50.000 0.00 0.00 45.42 4.40
1993 2295 1.468520 TGCGTTAGCTGCCATTCTTTC 59.531 47.619 0.00 0.00 45.42 2.62
2004 2306 1.879380 CCATTCTTTCGGTCACTTGCA 59.121 47.619 0.00 0.00 0.00 4.08
2008 2310 0.443869 CTTTCGGTCACTTGCATCGG 59.556 55.000 0.00 0.00 0.00 4.18
2014 2316 1.408266 GGTCACTTGCATCGGGGTAAT 60.408 52.381 0.00 0.00 0.00 1.89
2026 2328 1.557832 CGGGGTAATGAAACTCTCCCA 59.442 52.381 0.00 0.00 36.90 4.37
2029 2331 2.307686 GGGTAATGAAACTCTCCCACCA 59.692 50.000 0.00 0.00 35.43 4.17
2036 2338 3.166679 GAAACTCTCCCACCACTACTCT 58.833 50.000 0.00 0.00 0.00 3.24
2069 2372 4.081198 TGCTCTTTCCTTCCTCTCATCTTC 60.081 45.833 0.00 0.00 0.00 2.87
2071 2374 4.693420 TCTTTCCTTCCTCTCATCTTCCT 58.307 43.478 0.00 0.00 0.00 3.36
2077 2380 4.471386 CCTTCCTCTCATCTTCCTGGTTTA 59.529 45.833 0.00 0.00 0.00 2.01
2084 2387 0.321298 TCTTCCTGGTTTAGCCACGC 60.321 55.000 0.00 0.00 43.61 5.34
2107 2410 0.038599 ATGTGGATGGCAGCAAGACA 59.961 50.000 4.64 4.46 41.62 3.41
2108 2411 0.178995 TGTGGATGGCAGCAAGACAA 60.179 50.000 4.64 0.00 39.98 3.18
2117 2420 2.097142 GGCAGCAAGACAAGATCATCAC 59.903 50.000 0.00 0.00 0.00 3.06
2119 2422 2.005451 AGCAAGACAAGATCATCACGC 58.995 47.619 0.00 0.00 0.00 5.34
2121 2424 2.349590 CAAGACAAGATCATCACGCCA 58.650 47.619 0.00 0.00 0.00 5.69
2132 2435 3.402110 TCATCACGCCATGGATCATAAC 58.598 45.455 18.40 0.00 0.00 1.89
2135 2438 0.843309 ACGCCATGGATCATAACCCA 59.157 50.000 18.40 0.00 36.79 4.51
2140 2443 4.154942 GCCATGGATCATAACCCATTCTT 58.845 43.478 18.40 0.00 40.95 2.52
2160 2463 1.115467 CCTCATCTCGGTTAGCCACT 58.885 55.000 0.00 0.00 34.09 4.00
2164 2467 1.115467 ATCTCGGTTAGCCACTGGAG 58.885 55.000 0.00 0.00 31.75 3.86
2167 2470 1.448540 CGGTTAGCCACTGGAGCAG 60.449 63.158 0.00 0.00 37.52 4.24
2170 2473 0.393537 GTTAGCCACTGGAGCAGCAT 60.394 55.000 0.00 0.00 34.37 3.79
2184 2487 2.196925 AGCATCGACCTCGGCCTAG 61.197 63.158 0.00 0.00 40.29 3.02
2207 2510 3.951680 CCATTACCAATGTGTACTTCCCC 59.048 47.826 0.00 0.00 37.18 4.81
2209 2512 0.326927 ACCAATGTGTACTTCCCCGG 59.673 55.000 0.00 0.00 0.00 5.73
2211 2514 1.003812 CCAATGTGTACTTCCCCGGAA 59.996 52.381 0.73 0.00 0.00 4.30
2225 2528 4.266714 TCCCCGGAAATCATTTCTTACAC 58.733 43.478 0.73 0.00 39.59 2.90
2267 2572 9.158233 CGTAATGGATAGTGAGACCTTTAAAAA 57.842 33.333 0.00 0.00 0.00 1.94
2295 2603 1.155889 TGTCCTACAATGTGCAAGCG 58.844 50.000 0.00 0.00 0.00 4.68
2315 2623 3.642705 CGCCGAGAGATGATGAAATGTA 58.357 45.455 0.00 0.00 0.00 2.29
2318 2626 5.178252 CGCCGAGAGATGATGAAATGTATTT 59.822 40.000 0.00 0.00 0.00 1.40
2331 2639 5.855925 TGAAATGTATTTTCACGTGTGATGC 59.144 36.000 16.51 11.61 46.80 3.91
2338 2646 3.773860 TTCACGTGTGATGCTGTTTTT 57.226 38.095 16.51 0.00 39.64 1.94
2343 2651 2.535166 CGTGTGATGCTGTTTTTGTTGG 59.465 45.455 0.00 0.00 0.00 3.77
2344 2652 2.865551 GTGTGATGCTGTTTTTGTTGGG 59.134 45.455 0.00 0.00 0.00 4.12
2345 2653 2.158986 TGTGATGCTGTTTTTGTTGGGG 60.159 45.455 0.00 0.00 0.00 4.96
2346 2654 2.102252 GTGATGCTGTTTTTGTTGGGGA 59.898 45.455 0.00 0.00 0.00 4.81
2347 2655 2.768527 TGATGCTGTTTTTGTTGGGGAA 59.231 40.909 0.00 0.00 0.00 3.97
2348 2656 2.682155 TGCTGTTTTTGTTGGGGAAC 57.318 45.000 0.00 0.00 0.00 3.62
2349 2657 1.134965 TGCTGTTTTTGTTGGGGAACG 60.135 47.619 0.00 0.00 0.00 3.95
2350 2658 1.134936 GCTGTTTTTGTTGGGGAACGT 60.135 47.619 0.00 0.00 0.00 3.99
2351 2659 2.099427 GCTGTTTTTGTTGGGGAACGTA 59.901 45.455 0.00 0.00 0.00 3.57
2352 2660 3.794138 GCTGTTTTTGTTGGGGAACGTAG 60.794 47.826 0.00 0.00 0.00 3.51
2354 2662 4.521146 TGTTTTTGTTGGGGAACGTAGTA 58.479 39.130 0.00 0.00 45.00 1.82
2355 2663 4.946157 TGTTTTTGTTGGGGAACGTAGTAA 59.054 37.500 0.00 0.00 45.00 2.24
2356 2664 5.593502 TGTTTTTGTTGGGGAACGTAGTAAT 59.406 36.000 0.00 0.00 45.00 1.89
2357 2665 6.096564 TGTTTTTGTTGGGGAACGTAGTAATT 59.903 34.615 0.00 0.00 45.00 1.40
2358 2666 6.712179 TTTTGTTGGGGAACGTAGTAATTT 57.288 33.333 0.00 0.00 45.00 1.82
2359 2667 5.945466 TTGTTGGGGAACGTAGTAATTTC 57.055 39.130 0.00 0.00 45.00 2.17
2360 2668 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2361 2669 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2362 2670 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2363 2671 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2364 2672 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2383 2691 5.421212 AAAAATTTCCTACGTACACGCAA 57.579 34.783 0.85 0.00 44.43 4.85
2384 2692 4.657075 AAATTTCCTACGTACACGCAAG 57.343 40.909 0.85 0.00 44.43 4.01
2385 2693 3.581024 ATTTCCTACGTACACGCAAGA 57.419 42.857 0.85 0.00 44.43 3.02
2386 2694 3.581024 TTTCCTACGTACACGCAAGAT 57.419 42.857 0.85 0.00 44.43 2.40
2387 2695 2.838386 TCCTACGTACACGCAAGATC 57.162 50.000 0.85 0.00 44.43 2.75
2388 2696 2.086094 TCCTACGTACACGCAAGATCA 58.914 47.619 0.85 0.00 44.43 2.92
2389 2697 2.686405 TCCTACGTACACGCAAGATCAT 59.314 45.455 0.85 0.00 44.43 2.45
2390 2698 2.789339 CCTACGTACACGCAAGATCATG 59.211 50.000 0.85 0.00 44.43 3.07
2391 2699 1.640428 ACGTACACGCAAGATCATGG 58.360 50.000 0.85 0.00 44.43 3.66
2392 2700 1.067142 ACGTACACGCAAGATCATGGT 60.067 47.619 0.85 0.00 44.43 3.55
2393 2701 2.164827 ACGTACACGCAAGATCATGGTA 59.835 45.455 0.85 0.00 44.43 3.25
2394 2702 3.183754 CGTACACGCAAGATCATGGTAA 58.816 45.455 0.00 0.00 43.62 2.85
2395 2703 3.802139 CGTACACGCAAGATCATGGTAAT 59.198 43.478 0.00 0.00 43.62 1.89
2396 2704 4.318050 CGTACACGCAAGATCATGGTAATG 60.318 45.833 0.00 0.00 43.62 1.90
2397 2705 3.609853 ACACGCAAGATCATGGTAATGT 58.390 40.909 0.00 0.00 43.62 2.71
2398 2706 4.765273 ACACGCAAGATCATGGTAATGTA 58.235 39.130 0.00 0.00 43.62 2.29
2399 2707 5.368145 ACACGCAAGATCATGGTAATGTAT 58.632 37.500 0.00 0.00 43.62 2.29
2400 2708 6.521162 ACACGCAAGATCATGGTAATGTATA 58.479 36.000 0.00 0.00 43.62 1.47
2401 2709 6.646653 ACACGCAAGATCATGGTAATGTATAG 59.353 38.462 0.00 0.00 43.62 1.31
2402 2710 5.639506 ACGCAAGATCATGGTAATGTATAGC 59.360 40.000 0.00 0.00 43.62 2.97
2403 2711 5.639082 CGCAAGATCATGGTAATGTATAGCA 59.361 40.000 0.00 0.00 43.02 3.49
2404 2712 6.147656 CGCAAGATCATGGTAATGTATAGCAA 59.852 38.462 0.00 0.00 43.02 3.91
2405 2713 7.301054 GCAAGATCATGGTAATGTATAGCAAC 58.699 38.462 0.00 0.00 35.15 4.17
2406 2714 7.513132 CAAGATCATGGTAATGTATAGCAACG 58.487 38.462 0.00 0.00 35.15 4.10
2407 2715 6.993079 AGATCATGGTAATGTATAGCAACGA 58.007 36.000 0.00 0.00 35.15 3.85
2408 2716 7.093354 AGATCATGGTAATGTATAGCAACGAG 58.907 38.462 0.00 0.00 35.15 4.18
2409 2717 6.399639 TCATGGTAATGTATAGCAACGAGA 57.600 37.500 0.00 0.00 35.15 4.04
2410 2718 6.811954 TCATGGTAATGTATAGCAACGAGAA 58.188 36.000 0.00 0.00 35.15 2.87
2411 2719 6.923508 TCATGGTAATGTATAGCAACGAGAAG 59.076 38.462 0.00 0.00 35.15 2.85
2412 2720 5.597806 TGGTAATGTATAGCAACGAGAAGG 58.402 41.667 0.00 0.00 0.00 3.46
2413 2721 4.989168 GGTAATGTATAGCAACGAGAAGGG 59.011 45.833 0.00 0.00 0.00 3.95
2414 2722 3.753294 ATGTATAGCAACGAGAAGGGG 57.247 47.619 0.00 0.00 0.00 4.79
2415 2723 2.742348 TGTATAGCAACGAGAAGGGGA 58.258 47.619 0.00 0.00 0.00 4.81
2416 2724 2.693591 TGTATAGCAACGAGAAGGGGAG 59.306 50.000 0.00 0.00 0.00 4.30
2417 2725 1.867363 ATAGCAACGAGAAGGGGAGT 58.133 50.000 0.00 0.00 0.00 3.85
2418 2726 0.895530 TAGCAACGAGAAGGGGAGTG 59.104 55.000 0.00 0.00 0.00 3.51
2419 2727 1.122019 AGCAACGAGAAGGGGAGTGT 61.122 55.000 0.00 0.00 0.00 3.55
2420 2728 0.606604 GCAACGAGAAGGGGAGTGTA 59.393 55.000 0.00 0.00 0.00 2.90
2421 2729 1.207329 GCAACGAGAAGGGGAGTGTAT 59.793 52.381 0.00 0.00 0.00 2.29
2422 2730 2.738964 GCAACGAGAAGGGGAGTGTATC 60.739 54.545 0.00 0.00 0.00 2.24
2423 2731 2.761208 CAACGAGAAGGGGAGTGTATCT 59.239 50.000 0.00 0.00 0.00 1.98
2424 2732 3.103080 ACGAGAAGGGGAGTGTATCTT 57.897 47.619 0.00 0.00 0.00 2.40
2425 2733 3.025262 ACGAGAAGGGGAGTGTATCTTC 58.975 50.000 0.00 0.00 36.73 2.87
2426 2734 3.024547 CGAGAAGGGGAGTGTATCTTCA 58.975 50.000 0.00 0.00 38.35 3.02
2427 2735 3.639094 CGAGAAGGGGAGTGTATCTTCAT 59.361 47.826 0.00 0.00 38.35 2.57
2428 2736 4.827835 CGAGAAGGGGAGTGTATCTTCATA 59.172 45.833 0.00 0.00 38.35 2.15
2429 2737 5.278561 CGAGAAGGGGAGTGTATCTTCATAC 60.279 48.000 0.00 0.00 38.35 2.39
2430 2738 4.902448 AGAAGGGGAGTGTATCTTCATACC 59.098 45.833 0.00 0.00 38.35 2.73
2431 2739 3.588569 AGGGGAGTGTATCTTCATACCC 58.411 50.000 0.00 0.00 34.89 3.69
2432 2740 3.210074 AGGGGAGTGTATCTTCATACCCT 59.790 47.826 0.00 0.00 34.89 4.34
2433 2741 3.974642 GGGGAGTGTATCTTCATACCCTT 59.025 47.826 0.00 0.00 34.89 3.95
2434 2742 4.202367 GGGGAGTGTATCTTCATACCCTTG 60.202 50.000 0.00 0.00 34.89 3.61
2435 2743 4.654262 GGGAGTGTATCTTCATACCCTTGA 59.346 45.833 0.00 0.00 34.89 3.02
2436 2744 5.130477 GGGAGTGTATCTTCATACCCTTGAA 59.870 44.000 0.00 0.00 34.89 2.69
2445 2753 5.607939 TTCATACCCTTGAAGATCGCTAA 57.392 39.130 0.00 0.00 32.07 3.09
2446 2754 5.201713 TCATACCCTTGAAGATCGCTAAG 57.798 43.478 0.00 0.00 0.00 2.18
2447 2755 2.317530 ACCCTTGAAGATCGCTAAGC 57.682 50.000 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.871163 CGCCACAGGTTGCAACTTTG 60.871 55.000 27.64 25.34 0.00 2.77
2 3 1.437160 CGCCACAGGTTGCAACTTT 59.563 52.632 27.64 14.50 0.00 2.66
3 4 3.119193 CGCCACAGGTTGCAACTT 58.881 55.556 27.64 19.16 0.00 2.66
5 6 4.645921 GGCGCCACAGGTTGCAAC 62.646 66.667 24.80 21.59 0.00 4.17
95 96 0.963355 TTTACGCCCAGGTGAATGGC 60.963 55.000 3.80 0.00 39.17 4.40
107 108 5.763204 TCCTCATCCATCTTTAATTTACGCC 59.237 40.000 0.00 0.00 0.00 5.68
109 110 8.345565 CCTTTCCTCATCCATCTTTAATTTACG 58.654 37.037 0.00 0.00 0.00 3.18
374 375 6.263754 TCACCCAGCTTCATCCTCATATATA 58.736 40.000 0.00 0.00 0.00 0.86
375 376 5.096521 TCACCCAGCTTCATCCTCATATAT 58.903 41.667 0.00 0.00 0.00 0.86
376 377 4.492646 TCACCCAGCTTCATCCTCATATA 58.507 43.478 0.00 0.00 0.00 0.86
377 378 3.321039 TCACCCAGCTTCATCCTCATAT 58.679 45.455 0.00 0.00 0.00 1.78
401 402 9.132923 AGATATCAATTCATGTCTGAAATGCTT 57.867 29.630 5.32 0.00 44.29 3.91
514 760 3.572642 TCCTTTCCCTCGCAGATATACA 58.427 45.455 0.00 0.00 33.89 2.29
621 867 5.200368 ACAGCTTTCCCAACAAGTATTTG 57.800 39.130 0.00 0.00 40.24 2.32
687 933 5.364157 AGAGAGTGAGACACAAACCTTAACT 59.636 40.000 4.75 0.00 36.74 2.24
711 957 2.038659 TGCACCACAGGATATGATCGA 58.961 47.619 0.00 0.00 0.00 3.59
712 958 2.531522 TGCACCACAGGATATGATCG 57.468 50.000 0.00 0.00 0.00 3.69
724 970 3.367292 CCATTAGTTGTCCAATGCACCAC 60.367 47.826 0.00 0.00 32.00 4.16
761 1008 3.347216 GGCCTCTTTGATCAGCTTTACA 58.653 45.455 0.00 0.00 0.00 2.41
914 1167 6.479001 CACCCCTTGTGTTTATATAGACGAAG 59.521 42.308 0.00 4.23 40.26 3.79
915 1168 6.342906 CACCCCTTGTGTTTATATAGACGAA 58.657 40.000 0.00 0.00 40.26 3.85
1015 1272 1.123861 AGCAGAGAGAGCACCACCAA 61.124 55.000 0.00 0.00 0.00 3.67
1137 1397 0.606673 GCTCACTGGGGTGGAAGAAC 60.607 60.000 0.00 0.00 43.17 3.01
1290 1550 2.504244 CCTCGTCGAGCCGTGTTC 60.504 66.667 17.02 0.00 0.00 3.18
1446 1706 2.936498 CCATTAAGCATTCGACTTCGGT 59.064 45.455 0.00 0.00 40.29 4.69
1485 1745 2.182181 ATCCATCCACACGCATGCG 61.182 57.895 36.79 36.79 46.03 4.73
1487 1747 0.464193 TCCATCCATCCACACGCATG 60.464 55.000 0.00 0.00 0.00 4.06
1489 1749 1.078497 GTCCATCCATCCACACGCA 60.078 57.895 0.00 0.00 0.00 5.24
1490 1750 0.392998 AAGTCCATCCATCCACACGC 60.393 55.000 0.00 0.00 0.00 5.34
1491 1751 1.739466 CAAAGTCCATCCATCCACACG 59.261 52.381 0.00 0.00 0.00 4.49
1492 1752 1.474077 GCAAAGTCCATCCATCCACAC 59.526 52.381 0.00 0.00 0.00 3.82
1496 1756 0.734889 CACGCAAAGTCCATCCATCC 59.265 55.000 0.00 0.00 0.00 3.51
1498 1758 0.680921 CCCACGCAAAGTCCATCCAT 60.681 55.000 0.00 0.00 0.00 3.41
1499 1759 1.303236 CCCACGCAAAGTCCATCCA 60.303 57.895 0.00 0.00 0.00 3.41
1501 1761 2.700773 GGCCCACGCAAAGTCCATC 61.701 63.158 0.00 0.00 36.38 3.51
1502 1762 1.847798 TAGGCCCACGCAAAGTCCAT 61.848 55.000 0.00 0.00 36.38 3.41
1503 1763 2.463589 CTAGGCCCACGCAAAGTCCA 62.464 60.000 0.00 0.00 36.38 4.02
1504 1764 1.745489 CTAGGCCCACGCAAAGTCC 60.745 63.158 0.00 0.00 36.38 3.85
1505 1765 0.741221 CTCTAGGCCCACGCAAAGTC 60.741 60.000 0.00 0.00 36.38 3.01
1506 1766 1.192146 TCTCTAGGCCCACGCAAAGT 61.192 55.000 0.00 0.00 36.38 2.66
1576 1836 1.693083 CCATTTTCCCGTCGCTCGAC 61.693 60.000 11.97 11.97 42.86 4.20
1598 1858 2.046892 ACAGTGGATGTCGCCTGC 60.047 61.111 0.00 0.00 37.75 4.85
1607 1872 2.228545 TGAGAGCTCAGACAGTGGAT 57.771 50.000 17.77 0.00 34.14 3.41
1635 1900 1.565156 TTGTTCACAGCACGATCGGC 61.565 55.000 20.98 18.95 0.00 5.54
1712 1998 4.494410 GGACGCTGTGAAATAATTTAACGC 59.506 41.667 0.00 0.00 0.00 4.84
1719 2005 9.301153 GATAAAAATTGGACGCTGTGAAATAAT 57.699 29.630 0.00 0.00 0.00 1.28
1728 2014 3.694072 TGAGGGATAAAAATTGGACGCTG 59.306 43.478 0.00 0.00 0.00 5.18
1762 2048 4.878397 CAGACCTGAACTCAAAAGAAGTGT 59.122 41.667 0.00 0.00 0.00 3.55
1772 2074 0.681733 GAGCACCAGACCTGAACTCA 59.318 55.000 0.00 0.00 0.00 3.41
1828 2130 8.792830 TGAGTCATCTATTTTAAAACTGAGGG 57.207 34.615 1.97 2.44 0.00 4.30
1879 2181 9.128404 ACACATAAATACTCGTAGATGACCTAA 57.872 33.333 0.00 0.00 33.89 2.69
1880 2182 8.687292 ACACATAAATACTCGTAGATGACCTA 57.313 34.615 0.00 0.00 33.89 3.08
1881 2183 7.584122 ACACATAAATACTCGTAGATGACCT 57.416 36.000 0.00 0.00 33.89 3.85
1882 2184 8.136165 AGAACACATAAATACTCGTAGATGACC 58.864 37.037 0.00 0.00 33.89 4.02
1883 2185 9.171701 GAGAACACATAAATACTCGTAGATGAC 57.828 37.037 0.00 0.00 33.89 3.06
1884 2186 8.350722 GGAGAACACATAAATACTCGTAGATGA 58.649 37.037 0.00 0.00 33.89 2.92
1885 2187 8.353684 AGGAGAACACATAAATACTCGTAGATG 58.646 37.037 0.00 0.00 33.89 2.90
1886 2188 8.466617 AGGAGAACACATAAATACTCGTAGAT 57.533 34.615 0.00 0.00 33.89 1.98
1887 2189 7.876936 AGGAGAACACATAAATACTCGTAGA 57.123 36.000 0.00 0.00 0.00 2.59
1888 2190 9.053840 TCTAGGAGAACACATAAATACTCGTAG 57.946 37.037 0.08 0.08 40.73 3.51
1889 2191 8.969260 TCTAGGAGAACACATAAATACTCGTA 57.031 34.615 0.00 0.00 0.00 3.43
1890 2192 7.876936 TCTAGGAGAACACATAAATACTCGT 57.123 36.000 0.00 0.00 0.00 4.18
1891 2193 9.186323 CATTCTAGGAGAACACATAAATACTCG 57.814 37.037 0.00 0.00 37.00 4.18
1892 2194 8.983724 GCATTCTAGGAGAACACATAAATACTC 58.016 37.037 0.00 0.00 37.00 2.59
1893 2195 8.709308 AGCATTCTAGGAGAACACATAAATACT 58.291 33.333 0.00 0.00 37.00 2.12
1894 2196 8.894768 AGCATTCTAGGAGAACACATAAATAC 57.105 34.615 0.00 0.00 37.00 1.89
1895 2197 8.704668 TGAGCATTCTAGGAGAACACATAAATA 58.295 33.333 0.00 0.00 37.00 1.40
1896 2198 7.568349 TGAGCATTCTAGGAGAACACATAAAT 58.432 34.615 0.00 0.00 37.00 1.40
1897 2199 6.946340 TGAGCATTCTAGGAGAACACATAAA 58.054 36.000 0.00 0.00 37.00 1.40
1898 2200 6.544928 TGAGCATTCTAGGAGAACACATAA 57.455 37.500 0.00 0.00 37.00 1.90
1910 2212 1.476471 CCCAGCCCTTGAGCATTCTAG 60.476 57.143 0.00 0.00 34.23 2.43
1928 2230 3.078837 ACACATTTGTTATCGTGTCCCC 58.921 45.455 0.00 0.00 38.13 4.81
1944 2246 2.866156 CACAACTCACACGAGAACACAT 59.134 45.455 0.00 0.00 42.34 3.21
1945 2247 2.094442 TCACAACTCACACGAGAACACA 60.094 45.455 0.00 0.00 42.34 3.72
1946 2248 2.281762 GTCACAACTCACACGAGAACAC 59.718 50.000 0.00 0.00 42.34 3.32
1947 2249 2.536365 GTCACAACTCACACGAGAACA 58.464 47.619 0.00 0.00 42.34 3.18
1975 2277 1.062587 CCGAAAGAATGGCAGCTAACG 59.937 52.381 0.00 3.09 0.00 3.18
1986 2288 2.416547 CGATGCAAGTGACCGAAAGAAT 59.583 45.455 0.00 0.00 0.00 2.40
1987 2289 1.798223 CGATGCAAGTGACCGAAAGAA 59.202 47.619 0.00 0.00 0.00 2.52
1993 2295 2.233605 TACCCCGATGCAAGTGACCG 62.234 60.000 0.00 0.00 0.00 4.79
2004 2306 2.438392 GGGAGAGTTTCATTACCCCGAT 59.562 50.000 0.00 0.00 0.00 4.18
2008 2310 2.307686 TGGTGGGAGAGTTTCATTACCC 59.692 50.000 0.00 0.00 37.99 3.69
2014 2316 2.897969 GAGTAGTGGTGGGAGAGTTTCA 59.102 50.000 0.00 0.00 0.00 2.69
2026 2328 4.900635 CAAAGTTTGCAAGAGTAGTGGT 57.099 40.909 1.96 0.00 0.00 4.16
2084 2387 1.307355 TTGCTGCCATCCACATCACG 61.307 55.000 0.00 0.00 0.00 4.35
2107 2410 2.105306 TGATCCATGGCGTGATGATCTT 59.895 45.455 19.82 0.00 0.00 2.40
2108 2411 1.695788 TGATCCATGGCGTGATGATCT 59.304 47.619 19.82 0.00 0.00 2.75
2117 2420 2.205022 ATGGGTTATGATCCATGGCG 57.795 50.000 6.96 0.00 41.75 5.69
2119 2422 4.768968 GGAAGAATGGGTTATGATCCATGG 59.231 45.833 4.97 4.97 42.43 3.66
2121 2424 5.373555 TGAGGAAGAATGGGTTATGATCCAT 59.626 40.000 0.00 0.00 44.90 3.41
2132 2435 1.765314 ACCGAGATGAGGAAGAATGGG 59.235 52.381 0.00 0.00 0.00 4.00
2135 2438 3.070302 GGCTAACCGAGATGAGGAAGAAT 59.930 47.826 0.00 0.00 0.00 2.40
2140 2443 1.112113 GTGGCTAACCGAGATGAGGA 58.888 55.000 0.00 0.00 39.70 3.71
2160 2463 2.895680 GAGGTCGATGCTGCTCCA 59.104 61.111 0.00 0.00 0.00 3.86
2167 2470 2.336809 CTAGGCCGAGGTCGATGC 59.663 66.667 4.68 0.00 43.02 3.91
2184 2487 3.380320 GGGAAGTACACATTGGTAATGGC 59.620 47.826 6.51 0.00 43.21 4.40
2190 2493 0.326927 CCGGGGAAGTACACATTGGT 59.673 55.000 0.00 0.00 0.00 3.67
2207 2510 6.147821 AGTCACAGTGTAAGAAATGATTTCCG 59.852 38.462 13.88 0.00 40.54 4.30
2209 2512 7.800380 CACAGTCACAGTGTAAGAAATGATTTC 59.200 37.037 9.82 9.82 33.52 2.17
2211 2514 6.293626 GCACAGTCACAGTGTAAGAAATGATT 60.294 38.462 1.90 0.00 39.17 2.57
2267 2572 4.697352 GCACATTGTAGGACAAGAGAATGT 59.303 41.667 0.00 0.00 41.94 2.71
2268 2573 4.696877 TGCACATTGTAGGACAAGAGAATG 59.303 41.667 0.00 0.00 41.94 2.67
2295 2603 6.551385 AAATACATTTCATCATCTCTCGGC 57.449 37.500 0.00 0.00 0.00 5.54
2315 2623 3.988379 AACAGCATCACACGTGAAAAT 57.012 38.095 25.01 9.34 43.58 1.82
2318 2626 3.119673 ACAAAAACAGCATCACACGTGAA 60.120 39.130 25.01 10.37 43.58 3.18
2321 2629 3.178267 CAACAAAAACAGCATCACACGT 58.822 40.909 0.00 0.00 0.00 4.49
2322 2630 2.535166 CCAACAAAAACAGCATCACACG 59.465 45.455 0.00 0.00 0.00 4.49
2331 2639 2.951457 ACGTTCCCCAACAAAAACAG 57.049 45.000 0.00 0.00 32.14 3.16
2338 2646 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2361 2669 5.236911 TCTTGCGTGTACGTAGGAAATTTTT 59.763 36.000 4.99 0.00 37.16 1.94
2362 2670 4.751098 TCTTGCGTGTACGTAGGAAATTTT 59.249 37.500 4.99 0.00 37.16 1.82
2363 2671 4.309099 TCTTGCGTGTACGTAGGAAATTT 58.691 39.130 4.99 0.00 37.16 1.82
2364 2672 3.916761 TCTTGCGTGTACGTAGGAAATT 58.083 40.909 4.99 0.00 37.16 1.82
2365 2673 3.581024 TCTTGCGTGTACGTAGGAAAT 57.419 42.857 4.99 0.00 37.16 2.17
2366 2674 3.057386 TGATCTTGCGTGTACGTAGGAAA 60.057 43.478 10.79 1.48 42.30 3.13
2367 2675 2.488937 TGATCTTGCGTGTACGTAGGAA 59.511 45.455 10.79 0.00 42.30 3.36
2368 2676 2.086094 TGATCTTGCGTGTACGTAGGA 58.914 47.619 9.39 9.39 43.03 2.94
2369 2677 2.554806 TGATCTTGCGTGTACGTAGG 57.445 50.000 6.27 2.31 42.22 3.18
2370 2678 2.789339 CCATGATCTTGCGTGTACGTAG 59.211 50.000 6.27 4.63 42.22 3.51
2371 2679 2.164827 ACCATGATCTTGCGTGTACGTA 59.835 45.455 6.27 0.00 42.22 3.57
2372 2680 1.067142 ACCATGATCTTGCGTGTACGT 60.067 47.619 6.27 0.00 42.22 3.57
2373 2681 1.640428 ACCATGATCTTGCGTGTACG 58.360 50.000 3.07 0.00 43.27 3.67
2374 2682 4.570772 ACATTACCATGATCTTGCGTGTAC 59.429 41.667 3.07 0.00 34.11 2.90
2375 2683 4.765273 ACATTACCATGATCTTGCGTGTA 58.235 39.130 3.07 0.00 34.11 2.90
2376 2684 3.609853 ACATTACCATGATCTTGCGTGT 58.390 40.909 3.07 2.83 34.11 4.49
2377 2685 5.929697 ATACATTACCATGATCTTGCGTG 57.070 39.130 3.07 2.30 34.11 5.34
2378 2686 5.639506 GCTATACATTACCATGATCTTGCGT 59.360 40.000 3.07 5.73 34.11 5.24
2379 2687 5.639082 TGCTATACATTACCATGATCTTGCG 59.361 40.000 3.07 0.30 34.11 4.85
2380 2688 7.301054 GTTGCTATACATTACCATGATCTTGC 58.699 38.462 3.07 0.00 34.11 4.01
2381 2689 7.384932 TCGTTGCTATACATTACCATGATCTTG 59.615 37.037 0.00 1.60 34.11 3.02
2382 2690 7.441836 TCGTTGCTATACATTACCATGATCTT 58.558 34.615 0.00 0.00 34.11 2.40
2383 2691 6.993079 TCGTTGCTATACATTACCATGATCT 58.007 36.000 0.00 0.00 34.11 2.75
2384 2692 7.090808 TCTCGTTGCTATACATTACCATGATC 58.909 38.462 0.00 0.00 34.11 2.92
2385 2693 6.993079 TCTCGTTGCTATACATTACCATGAT 58.007 36.000 0.00 0.00 34.11 2.45
2386 2694 6.399639 TCTCGTTGCTATACATTACCATGA 57.600 37.500 0.00 0.00 34.11 3.07
2387 2695 6.146184 CCTTCTCGTTGCTATACATTACCATG 59.854 42.308 0.00 0.00 36.34 3.66
2388 2696 6.223852 CCTTCTCGTTGCTATACATTACCAT 58.776 40.000 0.00 0.00 0.00 3.55
2389 2697 5.452776 CCCTTCTCGTTGCTATACATTACCA 60.453 44.000 0.00 0.00 0.00 3.25
2390 2698 4.989168 CCCTTCTCGTTGCTATACATTACC 59.011 45.833 0.00 0.00 0.00 2.85
2391 2699 4.989168 CCCCTTCTCGTTGCTATACATTAC 59.011 45.833 0.00 0.00 0.00 1.89
2392 2700 4.897076 TCCCCTTCTCGTTGCTATACATTA 59.103 41.667 0.00 0.00 0.00 1.90
2393 2701 3.709653 TCCCCTTCTCGTTGCTATACATT 59.290 43.478 0.00 0.00 0.00 2.71
2394 2702 3.305720 TCCCCTTCTCGTTGCTATACAT 58.694 45.455 0.00 0.00 0.00 2.29
2395 2703 2.693591 CTCCCCTTCTCGTTGCTATACA 59.306 50.000 0.00 0.00 0.00 2.29
2396 2704 2.694109 ACTCCCCTTCTCGTTGCTATAC 59.306 50.000 0.00 0.00 0.00 1.47
2397 2705 2.693591 CACTCCCCTTCTCGTTGCTATA 59.306 50.000 0.00 0.00 0.00 1.31
2398 2706 1.482593 CACTCCCCTTCTCGTTGCTAT 59.517 52.381 0.00 0.00 0.00 2.97
2399 2707 0.895530 CACTCCCCTTCTCGTTGCTA 59.104 55.000 0.00 0.00 0.00 3.49
2400 2708 1.122019 ACACTCCCCTTCTCGTTGCT 61.122 55.000 0.00 0.00 0.00 3.91
2401 2709 0.606604 TACACTCCCCTTCTCGTTGC 59.393 55.000 0.00 0.00 0.00 4.17
2402 2710 2.761208 AGATACACTCCCCTTCTCGTTG 59.239 50.000 0.00 0.00 0.00 4.10
2403 2711 3.103080 AGATACACTCCCCTTCTCGTT 57.897 47.619 0.00 0.00 0.00 3.85
2404 2712 2.830651 AGATACACTCCCCTTCTCGT 57.169 50.000 0.00 0.00 0.00 4.18
2405 2713 3.024547 TGAAGATACACTCCCCTTCTCG 58.975 50.000 0.00 0.00 36.78 4.04
2406 2714 5.011227 GGTATGAAGATACACTCCCCTTCTC 59.989 48.000 0.00 0.00 36.85 2.87
2407 2715 4.902448 GGTATGAAGATACACTCCCCTTCT 59.098 45.833 0.00 0.00 36.85 2.85
2408 2716 4.040584 GGGTATGAAGATACACTCCCCTTC 59.959 50.000 0.00 0.00 35.78 3.46
2409 2717 3.974642 GGGTATGAAGATACACTCCCCTT 59.025 47.826 0.00 0.00 35.78 3.95
2410 2718 3.210074 AGGGTATGAAGATACACTCCCCT 59.790 47.826 0.00 0.00 44.26 4.79
2411 2719 3.588569 AGGGTATGAAGATACACTCCCC 58.411 50.000 0.00 0.00 44.26 4.81
2412 2720 4.654262 TCAAGGGTATGAAGATACACTCCC 59.346 45.833 0.00 0.00 46.43 4.30
2413 2721 5.871396 TCAAGGGTATGAAGATACACTCC 57.129 43.478 0.00 0.00 46.43 3.85
2423 2731 5.601662 CTTAGCGATCTTCAAGGGTATGAA 58.398 41.667 0.00 0.00 37.70 2.57
2424 2732 4.501571 GCTTAGCGATCTTCAAGGGTATGA 60.502 45.833 0.00 0.00 0.00 2.15
2425 2733 3.743396 GCTTAGCGATCTTCAAGGGTATG 59.257 47.826 0.00 0.00 0.00 2.39
2426 2734 3.996480 GCTTAGCGATCTTCAAGGGTAT 58.004 45.455 0.00 0.00 0.00 2.73
2427 2735 3.454371 GCTTAGCGATCTTCAAGGGTA 57.546 47.619 0.00 0.00 0.00 3.69
2428 2736 2.317530 GCTTAGCGATCTTCAAGGGT 57.682 50.000 0.00 0.00 0.00 4.34
2441 2749 3.651562 TGATAAACGCTTTCGCTTAGC 57.348 42.857 0.00 0.00 39.84 3.09
2442 2750 4.013397 CGTTGATAAACGCTTTCGCTTAG 58.987 43.478 1.55 0.00 39.43 2.18
2443 2751 3.981210 CGTTGATAAACGCTTTCGCTTA 58.019 40.909 1.55 0.00 39.43 3.09
2444 2752 2.834689 CGTTGATAAACGCTTTCGCTT 58.165 42.857 1.55 0.00 39.43 4.68
2445 2753 2.503943 CGTTGATAAACGCTTTCGCT 57.496 45.000 1.55 0.00 39.43 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.