>input_sequence_79369
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--------------------------------------------------------ATGGCGATGGCGGCGTTGGTGGTG
---CTCTCTCTGCTGCTCCTGCCCACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAGGCGCACCCGCACGGGCTGCCGTT
CGAGAGCCCGCTGGCGCTGTCGCCGGCGGCGTACGAGTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGCCGGCGCCC
CCGAGCTCGCGCCGCGCGGGCAGCCGAGGGGGGCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGGCGAGGGCC
GACCAGGAGGAAGGGGGCGTGGCGCCCGTGAACACGGCTCGACGAGGCGGAGCTGTCCGTGCGGGCGTGGTGGCCGGCGT
GTTCGTCGGGGCAGCGGTGGTGGTGTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGGCGTCGCGC
AAGGTGACGCTGAGGCGGCTAGCGCACCGAAGTCGAATGCTTAA------------------------------------
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>chr1B_1_TraesCS1B01G174200
GCAAAGTTGCAACCTGTGGCGCCACTACACAGTACATTCATGCAGGTTCTGCATGATAGCATCTGGGGATGCACGGTCCC
CCCGTGGCCGCAGGCGCCATTCACCTGGGCGTAAATTAAAGATGGATGAGGAAAGGCGACGGTACCGTGGGGGCATGGAG
GCACCGCTCGCACGCCTGTTCAATTGCTCCCGGCTCCTCGCCGGTGCGTGCGCCTTGCTCTTGAGTACGTATCGGCCATC
CGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCCGCACTTCTGCAGCCTGCAGG
CGAATGGAGCCTTTCAGGAAATCGATTGTGCATGTTTCTCACTTTTCAGGGTGGTATATATGAGGATGAAGCTGGGTGAT
TAA----GCATTTCAGACATGAATTGATATCTCAAGCAGTTTTGATCGAATATGAATATATGATGATAGTATAGTATATA
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-TATATCTCTACCTATCTATGCAAGTTCTTGGTCGGTTTTGTATATCTGCGAGGGAAAGGATGCATCCATCATTAGTAGC
CCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAGAATAAACAGTGTTCTCAAATACTTGTTGG
GAAAGCTGTCATTGAGCCTCTGCCTCTAGCCAGTCTCAGTAAACAAACATTAAGTTAAGGTTTGTGTCTCACTCTCTCGA
TCATATCCTGTGGTGCATTGGACAAC-TAATGGACATCCCCTGCATTTGTAAAGCTGATCAAAGAGGCCGATACATCATT
CCATCGCTCCGCACCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACGAGAATTGACGTGGAAGCAAAGCCTCAC
AGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCA------CCTAGCTCT----TCGTCTATATAAACACAAGGGGTGCTCA
AGATGCATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGTTGGTGGTG
---CTCTCTCTGCTGCTCCTGCCCACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAGGCGCACCCGCACGGGCTGCCGTT
CGAGAGCCCGCTGGCGCTGTCGCCGGCGGCGTACGAGTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGCCGGCGCCC
CCGAGCTCGCGCCGCGCGGGCAGCCGAGGGGGGCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGGCGAGGGCC
GACCAGGAGGAAGGGGGCGTGGCGCCCGTGAACACGGCTCGACGAGGCGGAGCTGTCCGTGCGGGCGTGGTGGCCGGCGT
GTTCGTCGGGGCAGCGGTGGTGGTGTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGGCGTCGCGC
AAGGTGACGCTGAGGCGGCTAGCGCACCGAAGTCGAATGCTTAATGGGCTGGATTCGGTACGCACGCATGCGTGTGGATG
GATGGACTTTGCGTGGGCCTAGAGAGTTAGGCCATAGGGGCGGGCTGGTAGTGTGTAAATTATCAGTGTTTCATCGTCGA
GCGACGGGAAAATGGTTGCAGGCGA-----CATCCACTGTCTGAGCTCTCAAGCCTACGG------------------CC
GATCGTGCTGTGAACAATCATCACGTACTAAT---AACCTCAGAGAACGCTTTTGTTCGAGTGAAATGCACCTATAGGCG
TTAAATTATTTCACAGCGTCCAATTTTTATCCCTCAACTCAGAAACCAC----------------ACTTCTTTTGAGTTC
AGGTCTGGTGCTCGTTCGTGCAATGAATAGTGAGACCTTTAAAACTATTCCCTCAGTTTTAAAATAGATGACTCAACTTT
GTACTAAAGTTAGTATAAAATTAGGTCATCTACGAGTATTTATGTGTTCTCCTAGAATGCTCAAGGGCTGGGGACACGAT
AACAAATGTGTTCTCGTGTGAGTTGTGACCATGTTGCGTTAGCTGCCATTCTTTCGGTCACTTGCATCGGGGTAATGAAA
CTCTCCCACCACTACTCTTGCAAACTTTGCTCTTTCCTTCC-TCTCATCTTCCTGGTTTAGCCACGCGTGATGTGGATGG
CAGCAAGACAAGATCATCACGCCATGGATCATAACCCATTCTTCCTCATCTCGGTTAGCCACTGGAGCAGCATCGACCTC
GGCCTAGCCATTACCAATGTGTACTTCCCCGGAAATCATTTCTTACACTGTGAC--TGTGCTTCGCGTAATGGATAGTGA
GACCTTTAAAAACATT---CTCTTGTCCTACAATGTGCAAGCGCCGAGAGATGATGAAATGTATTTTCACGTGTGATGCT
GTTTTTGTTGGGGAACGTAGTAATTTCAAAAAATTTCCTACGTACACGCAAGATCATGGTAATGTATAGCAACGAGAAGG
GGAGTGTATCTTCATACCCTTGAAGATCGCTAAGCGAAAGCGTTTATCAACG
>chr1D_7
TTGCAACA------TGTGGCGCCACTACACAGTACATTCATGCAGGTTCTGCATGATAGCATCTGGGGATGCACGGTCCC
CCCGTGGCCGCAGGCACCATTCACCTGCGTGTAAATTAAAGATGGATGAGTAAAGGCGACGGTAACGTGGGGGCATGGAG
GCACCGCTCGCACGCCTGTTCAATTGCTCCCGGTTCCTCGCCGGTGCGTGCACCTTGCTCTTGAGTACGTATCGACCATC
CGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCTTCACTTCTGCAGCCTGCAGG
CGAATGGAACCTTTCAGGAAATCGATTGTGCATGTTTCTCACTTTTCAGAGTGG----TATGAGGATGAAGCTGGGTGAT
TTA----GCATTTCAGACATGAATTGATATCTCAAGCAGTTTTGATCGAATATGGATATATGATGTTAGTATAGTACCAC
CTTCGTCCTGGTTTATAGGTCCCCTTTATAGTTTGTGCCAAATTTTGATTGAAGATTAAACTAATAAAATGTTAATGCAT
GTCAATAAAAATTATATTGTTGGATTCGTATTTGAACATAGTTTTCAATGATATAAATTTTTTTGACATGCATGAACATT
CTTTTAGTTCAATCTATGATCAAAATTTGGCACGAAATACAATAGGGACCAATAAATCAGGACCGAGGTAGTATATAGAA
GTATATCTCTACCTATCTATGCAAGTTCTTGTTCGGTTT-GTATGTCTGCGAGGGAAAGGATGCATCCATCATTAGTAGC
CCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAAAATAAACAGTGTTCTGAAATACTTGTTGG
GAAAGCTACGATTGA------GCCTCTAGCCAGTCTCAGTAAACAAACATTA-GTTAAGGTTTGTGTCTCACTCTC--GA
TCATATCCTATGGTGCATTGGACAACCTAATGGACATCTTCTGCATTCGTAAAGCTGATCAAAGAGGCCGATACATCATT
CCATCGCTCCGCACCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACAAGAATTGACGTGGAAGCAAAGCCTCAC
AGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCA------CCTAGCTAGCTCATCGTCTATATAAACACAAGGGGTGCGCA
AGACACATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGCTGGTGGTG
GTGCTCTCTCTCCTGTTCCTGCCGACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAAGCGCACCCACACGGGCTGCCGTT
CGAGAGCCCGCTGGCACTGTCCCCGGCGGCGTACGACTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGCCGGCGCCC
CCGAGCTCGCGCCGCGCGGGCAGCCAAGGGGGTCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGGCGAGGGCC
GACCACGAGGAAGGGGGCGTGGCGCCCGTCAACGCGGCTCGACGAGGTGGAGCTGTCCGTGCGGGCCTGGTGGCCGGCGT
GTTCGTCGGTGCCGCAATGGTGGTCTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGGCGTCGCGC
AAGGTGACGCTGAGGCGGCTAGCGCGCCGAAGTCAAATGCTTAATGGGCTGGATTAGGGGATAATGTAGTACTGTAGTAG
------TTTTGCGTGGGCCTAGAGAGTTAGGCC--------GGGCTGGTAGTGTGTAAATTATCAATGTTTCATCATCGA
GCGACGGGGAAACTGGTTAGCATGCTCGCGCTTCCACTGTCTGAGCTCTCAAGCCTAGGAGGAAACGCATTTCCTTGCCC
GATCGTGCTGTGAACAATCATCACGTA---ATATAAACCTCAGAGAACGCTTTTGTTCGAGTGAAATGCAC---------
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>chr1A_24
-----------------------ACTACACAGTACATTCATGCAGGTTCTGTATGATAGCATCTGGGGATGCACGGTCCC
CCCGTGGCCGCAGGCACCATTCACCTGCGTGGAAATTAAAGATGGATGAGTAAAGGCGACGGTAACGTGGGGGCATGGAG
GCACCGCTCGCACGCCTGTTCAATTGCTCCCG-TTCCTCGCCGGTGCGTGCGTCTTGCTCTTGAGTACGTATCGACCATC
CGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCTTCACTTCTGCAGCCTGCAGG
CGAAAGGAGCCTTTCAGGAAATCGATTGTGTATGTTTCTGACTTTTCAGGGTGG----TATGAGGATGAAGCTGGGTGAT
TTAATTAGCATTTCAGACATAAATTCATATCTCATGCAGTTTTGATCGAATGTGAATATATGATGTTAGTATAGTAAGTA
TATAAGAGTATATCTCTCACCCGCAAAAAAAAAG----------------------------------------------
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-------------------------------------------------------------------------------A
GTATATCTCTACCTATCTATGCAAGTTCTTGGTCGGTTT-GTATATCTGCGAGGGAAAGGATGCATCCATCATTAGTAGC
CCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAAAATAAACAGTGTTCTGAAATACTTGTTGG
GAAAGCTATCATTGA------GCCTCTAGCCAGTCTCAGTAAACAAACATTA-GTTAAGGTTTGTGTCTCACTCTC--GA
TCATATCCTATGGTGCATTGGACAACCTAATGGACATCCCCTGCATTCGTAAAGCTGATCAAAGAGGCCGATACATCATT
CCATCGCTCCGCGCCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACGAGAATTGACGTGGAAGCAAAGCCTCAC
AGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCAGTTCCACCTAGCTAGCTCATCGTCTATATAAACACAAGGGGTGCGCA
AGACACATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGCTGGTGGTG
GTGCTCTCTCTCCTGATCCTGCCGACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAAGCGCACCCGCACGGGCTGCCGTT
CGAGAGCCCGCTGGCACTGTCCCCGGCGGCGTACGACTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGCCGGCGCCC
CCGAGCTCGCGCCGCGCGGGCAGCCAAGGGGGTCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGGCGAGGGCC
GACCACGAGGAAGGGGGCGTGGCGCCCGTCAACACGGCTCGACGTGGTGGAGCTGTCCGTGCGGGCGTGGTGGCCGGCGT
GTTCGTCGGAGCCGCGGTGGTGGTCTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGGCGTCGCGC
AAGGTGACGCTGAGGTGGCTAGCGGGCCGAAGTCGAATGCTTAATGGGCTGGATTAGGG-----------------GTAG
------CTTTGCGTGGGCCTAGAGAGTTAGGCCATAGGGGCGGGCTGGTAGTGTGTAAATTATCGGTGTTTCATCATCGA
GCGACGGGAAAATGGTTACAGGCGA-----CTTCCACTGTATGAGCTCTCAAGCCTACGA------------------CC
GATCGTGCTGTGAACAATCATCGCGTACTAATATAAACCTCAGAGAACGCTTTTGCTCGAGCGAAGTGCACCTATAGCCG
TTAAGTTATTTCAAAGCGTCCAATTTTTATCCCTCAACTCAGAAACCGCACTTACAGTACAGTAAACTTCTTTCGAGTTC
AGGTCTGGTGCTCGTTCGTGCAATGAATAGTGAGACCTTTGAAAGTATTTA-----------------------------
----------------------------------------TATGTGTTCTCTTAGAATGCTCAAGGGCTCGGGAGACGAT
GACAA----GTTCTCGTGTGAGTTGTGACCATGTTGTGTTAGCTGCCGATCTTTGGGTCACTTGCTTCGAGGTAACGAAA
CTCTCCCGCCCCTACTCCTGCAAACTTTGCTCTTTCCTTCCCTCTCATCTTTCCGGTTTTGCCACGTGTGATGTGGATGG
CAGCAAGACGGGATCATCATGTCGTGGATCATAATCCGTTCTCCCTCATCTCGGTTAGCCACGGGACCACCACCGACCTC
GGCCTAACCATTGCCAATGTGTACTTCCCTGAAGATCATTTCTTACAATGTGACGTTGTGCTTCGCGTAATGGATAGTGA
GACCTTTAAAATTATTTCCCTCTTGTCCTACAATGTGCAAGCACCGAGAGATGATGAAATGTGTTGTCGTGTGTGATGTT
GTTTTAGTTG----------------------------------------------------------------------
----------------------------------------------------
>SNPs
SSSS-SSSSSSSSS------------------------------------------------------------------
---------------S-----------S-S--------------------S-------------S---------------
---------------------------------S----------------------------------------S-----
-----------------------------------------------------------SS-------------------
------------------------------------------------------SSSS----------------------
-S---------------------------------------------------------------S----------SS--
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---------------------------------------S----------------------------------------
--------------------------------------------------S---------------S-------------
-------S-------SSSSSS-------------------------------S-----------------------SS--
---------S-------------------------------------S--------------------------------
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----------------------------------------------SS-----------------------------S--
---SS------------------------------------------------------------------S--------
-----------S---S-------S--------------------------------S-----------------------
---------------S-----S--------------S-------------------------------------------
-------------------------S------S-----------------------------------------------
-----S-----------------------S-----------------S--------------------------------
---------S--S-----------S-------------------------------------------------------
-------------------------S-----------------------------S--SSSSS-S-S-SSSS---S-SS-
SSSSSS---------------------------------------------------------------------S----
-----------------S-------------S---------------------------S--------------------
-----------------------------------------------------------------------------S--
----S--------S---------------------------------S-------------------------S------
----------------------------------------S---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------------S----S-----
S----SSSS---------------------------S----------SS-----S----------S---S-----S----
-------S--S------S---------------------------------S-S-----S------S-------------
---------SS--------S-S-S----------S--S----S-------------------S---S--S--S-------
------S-----S----------------S-S-S-------------S--------------------------------
-----------SS-----------------------------S-------------------S--S--SS--------S-
-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_145
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---------------------------------------------ATGAGGAAAGGCGACGGTAC---------------
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>reverse_1750
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---------------------------------------------------------------------GCGTGTGGATG
GATGGACTT-----------------------------------------------------------------------
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