Multiple sequence alignment - TraesCS1B01G174100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G174100 chr1B 100.000 2546 0 0 1 2546 312250708 312248163 0.000000e+00 4702.0
1 TraesCS1B01G174100 chr1B 82.353 68 10 2 1472 1538 582021884 582021818 9.840000e-05 58.4
2 TraesCS1B01G174100 chr1A 91.298 1919 68 31 528 2366 280604616 280602717 0.000000e+00 2527.0
3 TraesCS1B01G174100 chr1A 92.486 173 13 0 197 369 280604785 280604613 5.440000e-62 248.0
4 TraesCS1B01G174100 chr1A 87.019 208 27 0 1 208 280616473 280616266 4.230000e-58 235.0
5 TraesCS1B01G174100 chr1A 86.726 113 12 2 2365 2476 15428572 15428462 3.440000e-24 122.0
6 TraesCS1B01G174100 chr1A 82.353 68 10 2 1472 1538 529126357 529126291 9.840000e-05 58.4
7 TraesCS1B01G174100 chr1D 93.229 1536 43 17 707 2194 218410669 218409147 0.000000e+00 2204.0
8 TraesCS1B01G174100 chr1D 98.864 176 2 0 528 703 218412751 218412576 5.290000e-82 315.0
9 TraesCS1B01G174100 chr1D 96.648 179 4 2 2189 2366 218408825 218408648 1.920000e-76 296.0
10 TraesCS1B01G174100 chr1D 94.301 193 11 0 1 193 218615461 218615653 1.920000e-76 296.0
11 TraesCS1B01G174100 chr1D 95.122 123 5 1 247 369 218412869 218412748 2.580000e-45 193.0
12 TraesCS1B01G174100 chr1D 88.889 45 5 0 1472 1516 430861090 430861046 3.540000e-04 56.5
13 TraesCS1B01G174100 chr6B 96.512 172 6 0 360 531 703155007 703155178 4.150000e-73 285.0
14 TraesCS1B01G174100 chr6B 95.977 174 7 0 366 539 231671509 231671682 1.490000e-72 283.0
15 TraesCS1B01G174100 chr6B 95.930 172 7 0 366 537 696480246 696480075 1.930000e-71 279.0
16 TraesCS1B01G174100 chr6B 95.429 175 6 2 366 540 260545090 260544918 6.940000e-71 278.0
17 TraesCS1B01G174100 chr2B 97.041 169 5 0 365 533 765211925 765212093 4.150000e-73 285.0
18 TraesCS1B01G174100 chr2A 96.491 171 5 1 366 536 113822295 113822464 5.360000e-72 281.0
19 TraesCS1B01G174100 chr2A 89.720 107 8 3 2365 2470 36027906 36028010 1.590000e-27 134.0
20 TraesCS1B01G174100 chr5B 95.930 172 7 0 365 536 334784947 334785118 1.930000e-71 279.0
21 TraesCS1B01G174100 chr5B 93.514 185 10 2 358 542 277275530 277275712 8.970000e-70 274.0
22 TraesCS1B01G174100 chr5B 85.294 204 22 3 1009 1212 60910160 60910355 1.190000e-48 204.0
23 TraesCS1B01G174100 chr5B 91.803 61 3 2 2486 2546 518036406 518036464 1.620000e-12 84.2
24 TraesCS1B01G174100 chr5B 82.105 95 15 2 1453 1546 230782024 230781931 2.100000e-11 80.5
25 TraesCS1B01G174100 chr3B 95.930 172 7 0 365 536 731267037 731267208 1.930000e-71 279.0
26 TraesCS1B01G174100 chr3A 86.531 245 29 4 1003 1247 378305215 378305455 1.500000e-67 267.0
27 TraesCS1B01G174100 chr3A 88.496 113 12 1 2365 2476 12841556 12841668 4.420000e-28 135.0
28 TraesCS1B01G174100 chr3A 98.148 54 1 0 2493 2546 401021698 401021645 7.500000e-16 95.3
29 TraesCS1B01G174100 chr3A 94.444 54 3 0 2493 2546 204863676 204863623 1.620000e-12 84.2
30 TraesCS1B01G174100 chr3D 83.142 261 28 12 1002 1247 288295770 288296029 9.170000e-55 224.0
31 TraesCS1B01G174100 chr3D 86.082 194 15 10 1004 1195 329686510 329686327 5.560000e-47 198.0
32 TraesCS1B01G174100 chr7D 88.596 114 10 2 2364 2476 89480632 89480743 4.420000e-28 135.0
33 TraesCS1B01G174100 chr7D 94.444 54 3 0 2493 2546 417934573 417934520 1.620000e-12 84.2
34 TraesCS1B01G174100 chr4A 88.596 114 10 3 2364 2476 595547266 595547155 4.420000e-28 135.0
35 TraesCS1B01G174100 chr4A 82.301 113 15 4 2365 2476 145882748 145882640 2.700000e-15 93.5
36 TraesCS1B01G174100 chr4A 96.226 53 2 0 2493 2545 63275464 63275412 1.250000e-13 87.9
37 TraesCS1B01G174100 chr6D 95.082 61 1 2 2486 2546 370852869 370852927 7.500000e-16 95.3
38 TraesCS1B01G174100 chr2D 98.148 54 1 0 2493 2546 282936970 282936917 7.500000e-16 95.3
39 TraesCS1B01G174100 chr2D 94.444 54 3 0 2493 2546 404045333 404045280 1.620000e-12 84.2
40 TraesCS1B01G174100 chr4D 94.444 54 3 0 2493 2546 144743557 144743610 1.620000e-12 84.2
41 TraesCS1B01G174100 chr5A 82.105 95 15 2 1453 1546 283111203 283111110 2.100000e-11 80.5
42 TraesCS1B01G174100 chr5D 95.833 48 2 0 1059 1106 564235257 564235210 7.550000e-11 78.7
43 TraesCS1B01G174100 chr5D 81.053 95 16 2 1453 1546 215256151 215256058 9.770000e-10 75.0
44 TraesCS1B01G174100 chr4B 95.000 40 2 0 1067 1106 140587431 140587470 2.110000e-06 63.9
45 TraesCS1B01G174100 chr7A 86.207 58 6 2 2365 2421 644774061 644774117 7.610000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G174100 chr1B 312248163 312250708 2545 True 4702.0 4702 100.00000 1 2546 1 chr1B.!!$R1 2545
1 TraesCS1B01G174100 chr1A 280602717 280604785 2068 True 1387.5 2527 91.89200 197 2366 2 chr1A.!!$R4 2169
2 TraesCS1B01G174100 chr1D 218408648 218412869 4221 True 752.0 2204 95.96575 247 2366 4 chr1D.!!$R2 2119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.035598 TTCTTCACCAATCCGCGGAA 59.964 50.0 34.66 16.3 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 3470 0.751277 TAATCGTAAGGGGACGGCGA 60.751 55.0 16.62 0.0 43.12 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.507077 TCACAAAAGTTGTTTCGTAGATGC 58.493 37.500 0.00 0.00 43.23 3.91
25 26 4.375698 CACAAAAGTTGTTTCGTAGATGCG 59.624 41.667 0.00 0.00 43.23 4.73
26 27 3.806316 AAAGTTGTTTCGTAGATGCGG 57.194 42.857 0.00 0.00 35.04 5.69
27 28 1.076332 AGTTGTTTCGTAGATGCGGC 58.924 50.000 0.00 0.00 35.04 6.53
28 29 0.247145 GTTGTTTCGTAGATGCGGCG 60.247 55.000 0.51 0.51 35.04 6.46
29 30 1.355796 TTGTTTCGTAGATGCGGCGG 61.356 55.000 9.78 0.00 35.04 6.13
30 31 2.888534 TTTCGTAGATGCGGCGGC 60.889 61.111 9.78 9.68 35.04 6.53
31 32 3.365291 TTTCGTAGATGCGGCGGCT 62.365 57.895 17.76 2.89 40.82 5.52
32 33 2.007113 TTTCGTAGATGCGGCGGCTA 62.007 55.000 17.76 4.42 40.82 3.93
33 34 2.402282 TTCGTAGATGCGGCGGCTAG 62.402 60.000 17.76 0.00 40.82 3.42
34 35 2.049063 GTAGATGCGGCGGCTAGG 60.049 66.667 17.76 0.00 40.82 3.02
35 36 2.520982 TAGATGCGGCGGCTAGGT 60.521 61.111 17.76 1.00 40.82 3.08
36 37 2.131709 TAGATGCGGCGGCTAGGTT 61.132 57.895 17.76 1.78 40.82 3.50
37 38 1.682451 TAGATGCGGCGGCTAGGTTT 61.682 55.000 17.76 0.45 40.82 3.27
38 39 1.227438 GATGCGGCGGCTAGGTTTA 60.227 57.895 17.76 0.00 40.82 2.01
39 40 0.602905 GATGCGGCGGCTAGGTTTAT 60.603 55.000 17.76 0.08 40.82 1.40
40 41 0.682852 ATGCGGCGGCTAGGTTTATA 59.317 50.000 17.76 0.00 40.82 0.98
41 42 0.682852 TGCGGCGGCTAGGTTTATAT 59.317 50.000 17.76 0.00 40.82 0.86
42 43 1.076332 GCGGCGGCTAGGTTTATATG 58.924 55.000 9.78 0.00 35.83 1.78
43 44 1.337447 GCGGCGGCTAGGTTTATATGA 60.337 52.381 9.78 0.00 35.83 2.15
44 45 2.868839 GCGGCGGCTAGGTTTATATGAA 60.869 50.000 9.78 0.00 35.83 2.57
45 46 3.395639 CGGCGGCTAGGTTTATATGAAA 58.604 45.455 7.61 0.00 0.00 2.69
46 47 4.000988 CGGCGGCTAGGTTTATATGAAAT 58.999 43.478 7.61 0.00 0.00 2.17
47 48 4.454504 CGGCGGCTAGGTTTATATGAAATT 59.545 41.667 7.61 0.00 0.00 1.82
48 49 5.048991 CGGCGGCTAGGTTTATATGAAATTT 60.049 40.000 7.61 0.00 0.00 1.82
49 50 6.379386 GGCGGCTAGGTTTATATGAAATTTC 58.621 40.000 11.41 11.41 0.00 2.17
50 51 6.206829 GGCGGCTAGGTTTATATGAAATTTCT 59.793 38.462 18.64 7.42 0.00 2.52
51 52 7.298854 GCGGCTAGGTTTATATGAAATTTCTC 58.701 38.462 18.64 0.00 0.00 2.87
52 53 7.573283 GCGGCTAGGTTTATATGAAATTTCTCC 60.573 40.741 18.64 9.46 0.00 3.71
53 54 7.360101 CGGCTAGGTTTATATGAAATTTCTCCG 60.360 40.741 18.64 8.52 0.00 4.63
54 55 7.444487 GGCTAGGTTTATATGAAATTTCTCCGT 59.556 37.037 18.64 5.66 0.00 4.69
55 56 8.837389 GCTAGGTTTATATGAAATTTCTCCGTT 58.163 33.333 18.64 3.05 0.00 4.44
58 59 9.855021 AGGTTTATATGAAATTTCTCCGTTTTG 57.145 29.630 18.64 0.00 0.00 2.44
59 60 9.634163 GGTTTATATGAAATTTCTCCGTTTTGT 57.366 29.630 18.64 0.00 0.00 2.83
64 65 9.757227 ATATGAAATTTCTCCGTTTTGTTGAAA 57.243 25.926 18.64 0.00 0.00 2.69
65 66 8.661352 ATGAAATTTCTCCGTTTTGTTGAAAT 57.339 26.923 18.64 0.00 38.49 2.17
66 67 8.125728 TGAAATTTCTCCGTTTTGTTGAAATC 57.874 30.769 18.64 0.00 36.65 2.17
67 68 7.978975 TGAAATTTCTCCGTTTTGTTGAAATCT 59.021 29.630 18.64 0.00 36.65 2.40
68 69 7.698836 AATTTCTCCGTTTTGTTGAAATCTG 57.301 32.000 0.00 0.00 36.65 2.90
69 70 6.443934 TTTCTCCGTTTTGTTGAAATCTGA 57.556 33.333 0.00 0.00 0.00 3.27
70 71 6.633500 TTCTCCGTTTTGTTGAAATCTGAT 57.367 33.333 0.00 0.00 0.00 2.90
71 72 6.633500 TCTCCGTTTTGTTGAAATCTGATT 57.367 33.333 0.00 0.00 0.00 2.57
72 73 7.038154 TCTCCGTTTTGTTGAAATCTGATTT 57.962 32.000 15.09 15.09 34.64 2.17
73 74 6.917477 TCTCCGTTTTGTTGAAATCTGATTTG 59.083 34.615 19.59 2.90 31.47 2.32
74 75 6.800543 TCCGTTTTGTTGAAATCTGATTTGA 58.199 32.000 19.59 9.24 31.47 2.69
75 76 7.261325 TCCGTTTTGTTGAAATCTGATTTGAA 58.739 30.769 19.59 14.77 31.47 2.69
76 77 7.761704 TCCGTTTTGTTGAAATCTGATTTGAAA 59.238 29.630 19.59 11.07 31.47 2.69
77 78 8.550376 CCGTTTTGTTGAAATCTGATTTGAAAT 58.450 29.630 19.59 0.00 31.47 2.17
78 79 9.360514 CGTTTTGTTGAAATCTGATTTGAAATG 57.639 29.630 19.59 12.51 31.47 2.32
86 87 9.389755 TGAAATCTGATTTGAAATGTATACCGA 57.610 29.630 19.59 0.00 31.47 4.69
87 88 9.651718 GAAATCTGATTTGAAATGTATACCGAC 57.348 33.333 19.59 0.00 31.47 4.79
88 89 8.731275 AATCTGATTTGAAATGTATACCGACA 57.269 30.769 0.00 0.00 0.00 4.35
89 90 8.908786 ATCTGATTTGAAATGTATACCGACAT 57.091 30.769 0.00 0.00 41.92 3.06
90 91 8.141835 TCTGATTTGAAATGTATACCGACATG 57.858 34.615 0.00 0.00 39.99 3.21
91 92 7.226523 TCTGATTTGAAATGTATACCGACATGG 59.773 37.037 0.00 0.00 39.99 3.66
100 101 3.513225 CCGACATGGTTGGATGGC 58.487 61.111 0.00 0.00 39.36 4.40
101 102 2.120909 CCGACATGGTTGGATGGCC 61.121 63.158 0.00 0.00 39.36 5.36
102 103 2.472059 CGACATGGTTGGATGGCCG 61.472 63.158 0.00 0.00 36.79 6.13
103 104 2.044053 ACATGGTTGGATGGCCGG 60.044 61.111 0.00 0.00 36.79 6.13
104 105 2.044053 CATGGTTGGATGGCCGGT 60.044 61.111 1.90 0.00 36.79 5.28
105 106 1.682005 CATGGTTGGATGGCCGGTT 60.682 57.895 1.90 0.00 36.79 4.44
106 107 1.379843 ATGGTTGGATGGCCGGTTC 60.380 57.895 1.90 0.00 36.79 3.62
107 108 2.754254 GGTTGGATGGCCGGTTCC 60.754 66.667 1.90 11.33 36.79 3.62
108 109 2.754254 GTTGGATGGCCGGTTCCC 60.754 66.667 14.66 3.95 36.79 3.97
118 119 4.657824 CGGTTCCCGCGTCAGTGT 62.658 66.667 4.92 0.00 41.17 3.55
119 120 2.737376 GGTTCCCGCGTCAGTGTC 60.737 66.667 4.92 0.00 0.00 3.67
120 121 2.737376 GTTCCCGCGTCAGTGTCC 60.737 66.667 4.92 0.00 0.00 4.02
121 122 4.351938 TTCCCGCGTCAGTGTCCG 62.352 66.667 4.92 0.00 0.00 4.79
127 128 4.039357 CGTCAGTGTCCGCGGACT 62.039 66.667 46.72 32.19 44.80 3.85
128 129 2.430921 GTCAGTGTCCGCGGACTG 60.431 66.667 46.72 38.81 44.80 3.51
129 130 2.910479 TCAGTGTCCGCGGACTGT 60.910 61.111 46.72 34.80 44.80 3.55
130 131 2.029073 CAGTGTCCGCGGACTGTT 59.971 61.111 46.72 32.82 44.80 3.16
131 132 2.022129 CAGTGTCCGCGGACTGTTC 61.022 63.158 46.72 34.29 44.80 3.18
132 133 2.201022 AGTGTCCGCGGACTGTTCT 61.201 57.895 46.72 35.52 44.80 3.01
133 134 1.300697 GTGTCCGCGGACTGTTCTT 60.301 57.895 46.72 0.00 44.80 2.52
134 135 1.006571 TGTCCGCGGACTGTTCTTC 60.007 57.895 46.72 26.65 44.80 2.87
135 136 1.006571 GTCCGCGGACTGTTCTTCA 60.007 57.895 43.32 11.62 41.57 3.02
136 137 1.006571 TCCGCGGACTGTTCTTCAC 60.007 57.895 27.28 0.00 0.00 3.18
137 138 2.027625 CCGCGGACTGTTCTTCACC 61.028 63.158 24.07 0.00 0.00 4.02
138 139 1.300620 CGCGGACTGTTCTTCACCA 60.301 57.895 0.00 0.00 0.00 4.17
139 140 0.878523 CGCGGACTGTTCTTCACCAA 60.879 55.000 0.00 0.00 0.00 3.67
140 141 1.523758 GCGGACTGTTCTTCACCAAT 58.476 50.000 0.00 0.00 0.00 3.16
141 142 1.464997 GCGGACTGTTCTTCACCAATC 59.535 52.381 0.00 0.00 0.00 2.67
142 143 2.076863 CGGACTGTTCTTCACCAATCC 58.923 52.381 0.00 0.00 0.00 3.01
143 144 2.076863 GGACTGTTCTTCACCAATCCG 58.923 52.381 0.00 0.00 0.00 4.18
144 145 1.464997 GACTGTTCTTCACCAATCCGC 59.535 52.381 0.00 0.00 0.00 5.54
145 146 0.443869 CTGTTCTTCACCAATCCGCG 59.556 55.000 0.00 0.00 0.00 6.46
146 147 0.953471 TGTTCTTCACCAATCCGCGG 60.953 55.000 22.12 22.12 0.00 6.46
147 148 0.672401 GTTCTTCACCAATCCGCGGA 60.672 55.000 33.12 33.12 0.00 5.54
148 149 0.035598 TTCTTCACCAATCCGCGGAA 59.964 50.000 34.66 16.30 0.00 4.30
149 150 0.035598 TCTTCACCAATCCGCGGAAA 59.964 50.000 34.66 19.59 0.00 3.13
150 151 0.447801 CTTCACCAATCCGCGGAAAG 59.552 55.000 34.66 24.88 0.00 2.62
151 152 0.250553 TTCACCAATCCGCGGAAAGT 60.251 50.000 34.66 25.51 0.00 2.66
152 153 0.250553 TCACCAATCCGCGGAAAGTT 60.251 50.000 34.66 19.97 0.00 2.66
153 154 1.002201 TCACCAATCCGCGGAAAGTTA 59.998 47.619 34.66 17.74 0.00 2.24
154 155 1.129811 CACCAATCCGCGGAAAGTTAC 59.870 52.381 34.66 0.00 0.00 2.50
155 156 1.270947 ACCAATCCGCGGAAAGTTACA 60.271 47.619 34.66 6.66 0.00 2.41
156 157 1.396996 CCAATCCGCGGAAAGTTACAG 59.603 52.381 34.66 14.74 0.00 2.74
157 158 2.073816 CAATCCGCGGAAAGTTACAGT 58.926 47.619 34.66 9.49 0.00 3.55
158 159 1.722011 ATCCGCGGAAAGTTACAGTG 58.278 50.000 34.66 0.00 0.00 3.66
159 160 0.947180 TCCGCGGAAAGTTACAGTGC 60.947 55.000 28.99 0.00 0.00 4.40
160 161 1.495951 CGCGGAAAGTTACAGTGCC 59.504 57.895 0.00 0.00 0.00 5.01
161 162 1.873863 GCGGAAAGTTACAGTGCCC 59.126 57.895 0.00 0.00 0.00 5.36
162 163 1.908066 GCGGAAAGTTACAGTGCCCG 61.908 60.000 0.00 0.00 38.58 6.13
163 164 1.296056 CGGAAAGTTACAGTGCCCGG 61.296 60.000 0.00 0.00 32.64 5.73
164 165 1.583495 GGAAAGTTACAGTGCCCGGC 61.583 60.000 1.04 1.04 0.00 6.13
165 166 0.605589 GAAAGTTACAGTGCCCGGCT 60.606 55.000 11.61 0.00 0.00 5.52
166 167 0.179001 AAAGTTACAGTGCCCGGCTT 60.179 50.000 11.61 0.00 0.00 4.35
167 168 0.889186 AAGTTACAGTGCCCGGCTTG 60.889 55.000 11.61 11.56 0.00 4.01
168 169 2.033448 TTACAGTGCCCGGCTTGG 59.967 61.111 11.61 2.08 37.55 3.61
178 179 4.404098 CGGCTTGGGGGTTAGCGT 62.404 66.667 0.00 0.00 38.28 5.07
179 180 2.035155 GGCTTGGGGGTTAGCGTT 59.965 61.111 0.00 0.00 38.28 4.84
180 181 2.340328 GGCTTGGGGGTTAGCGTTG 61.340 63.158 0.00 0.00 38.28 4.10
181 182 2.340328 GCTTGGGGGTTAGCGTTGG 61.340 63.158 0.00 0.00 0.00 3.77
182 183 1.377229 CTTGGGGGTTAGCGTTGGA 59.623 57.895 0.00 0.00 0.00 3.53
183 184 0.676782 CTTGGGGGTTAGCGTTGGAG 60.677 60.000 0.00 0.00 0.00 3.86
184 185 2.132089 TTGGGGGTTAGCGTTGGAGG 62.132 60.000 0.00 0.00 0.00 4.30
185 186 2.599757 GGGGGTTAGCGTTGGAGGT 61.600 63.158 0.00 0.00 0.00 3.85
186 187 1.376812 GGGGTTAGCGTTGGAGGTG 60.377 63.158 0.00 0.00 0.00 4.00
187 188 1.376812 GGGTTAGCGTTGGAGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
188 189 2.038837 GGTTAGCGTTGGAGGTGGC 61.039 63.158 0.00 0.00 0.00 5.01
189 190 2.038837 GTTAGCGTTGGAGGTGGCC 61.039 63.158 0.00 0.00 0.00 5.36
190 191 2.221299 TTAGCGTTGGAGGTGGCCT 61.221 57.895 3.32 0.00 36.03 5.19
191 192 0.905809 TTAGCGTTGGAGGTGGCCTA 60.906 55.000 3.32 0.00 31.76 3.93
192 193 0.905809 TAGCGTTGGAGGTGGCCTAA 60.906 55.000 3.32 0.00 31.76 2.69
193 194 2.038837 GCGTTGGAGGTGGCCTAAC 61.039 63.158 3.32 0.00 31.76 2.34
194 195 1.740296 CGTTGGAGGTGGCCTAACG 60.740 63.158 3.32 7.82 36.71 3.18
195 196 1.675219 GTTGGAGGTGGCCTAACGA 59.325 57.895 3.32 0.00 31.76 3.85
200 201 1.068741 GGAGGTGGCCTAACGATACAG 59.931 57.143 3.32 0.00 31.76 2.74
223 224 1.600023 TTTTCACTGCCCAGTTACCG 58.400 50.000 0.00 0.00 40.20 4.02
300 301 2.412089 CGGATTTCAAAGAGGACACGAC 59.588 50.000 0.00 0.00 0.00 4.34
333 334 1.841302 TTGCGGGCAGAAGAGGACAT 61.841 55.000 0.00 0.00 0.00 3.06
369 370 1.227793 GGATGGCCAGCAGCTACTC 60.228 63.158 24.75 6.76 43.05 2.59
370 371 1.227793 GATGGCCAGCAGCTACTCC 60.228 63.158 18.08 0.00 43.05 3.85
371 372 2.672966 GATGGCCAGCAGCTACTCCC 62.673 65.000 18.08 0.00 43.05 4.30
372 373 3.086600 GGCCAGCAGCTACTCCCT 61.087 66.667 0.00 0.00 43.05 4.20
373 374 2.503546 GCCAGCAGCTACTCCCTC 59.496 66.667 0.00 0.00 38.99 4.30
374 375 3.100503 GCCAGCAGCTACTCCCTCC 62.101 68.421 0.00 0.00 38.99 4.30
375 376 2.790791 CCAGCAGCTACTCCCTCCG 61.791 68.421 0.00 0.00 0.00 4.63
376 377 2.055042 CAGCAGCTACTCCCTCCGT 61.055 63.158 0.00 0.00 0.00 4.69
377 378 1.305381 AGCAGCTACTCCCTCCGTT 60.305 57.895 0.00 0.00 0.00 4.44
378 379 1.142097 GCAGCTACTCCCTCCGTTC 59.858 63.158 0.00 0.00 0.00 3.95
379 380 1.817209 CAGCTACTCCCTCCGTTCC 59.183 63.158 0.00 0.00 0.00 3.62
380 381 0.684805 CAGCTACTCCCTCCGTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
381 382 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
382 383 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
383 384 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
384 385 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
385 386 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
386 387 4.261952 GCTACTCCCTCCGTTCCTAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
387 388 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
388 389 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
389 390 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
390 391 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
391 392 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
392 393 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
393 394 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
394 395 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
395 396 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
396 397 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
397 398 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
398 399 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
399 400 9.211485 CCGTTCCTAAATACTTGTCTTTTTAGA 57.789 33.333 0.00 0.00 34.90 2.10
424 425 9.916397 GAGATTTTAACAAATGACTACATACGG 57.084 33.333 0.00 0.00 35.50 4.02
425 426 8.395633 AGATTTTAACAAATGACTACATACGGC 58.604 33.333 0.00 0.00 35.50 5.68
426 427 5.705813 TTAACAAATGACTACATACGGCG 57.294 39.130 4.80 4.80 35.50 6.46
427 428 1.931172 ACAAATGACTACATACGGCGC 59.069 47.619 6.90 0.00 35.50 6.53
428 429 1.930503 CAAATGACTACATACGGCGCA 59.069 47.619 10.83 0.00 35.50 6.09
429 430 2.303163 AATGACTACATACGGCGCAA 57.697 45.000 10.83 0.00 35.50 4.85
430 431 2.303163 ATGACTACATACGGCGCAAA 57.697 45.000 10.83 0.00 34.71 3.68
431 432 2.081725 TGACTACATACGGCGCAAAA 57.918 45.000 10.83 0.00 0.00 2.44
432 433 2.623535 TGACTACATACGGCGCAAAAT 58.376 42.857 10.83 0.00 0.00 1.82
433 434 3.783191 TGACTACATACGGCGCAAAATA 58.217 40.909 10.83 0.00 0.00 1.40
434 435 4.182339 TGACTACATACGGCGCAAAATAA 58.818 39.130 10.83 0.00 0.00 1.40
435 436 4.269123 TGACTACATACGGCGCAAAATAAG 59.731 41.667 10.83 0.06 0.00 1.73
436 437 4.186159 ACTACATACGGCGCAAAATAAGT 58.814 39.130 10.83 0.77 0.00 2.24
437 438 3.398954 ACATACGGCGCAAAATAAGTG 57.601 42.857 10.83 0.00 0.00 3.16
438 439 3.004171 ACATACGGCGCAAAATAAGTGA 58.996 40.909 10.83 0.00 0.00 3.41
439 440 3.437395 ACATACGGCGCAAAATAAGTGAA 59.563 39.130 10.83 0.00 0.00 3.18
440 441 4.095782 ACATACGGCGCAAAATAAGTGAAT 59.904 37.500 10.83 0.00 0.00 2.57
441 442 3.131240 ACGGCGCAAAATAAGTGAATC 57.869 42.857 10.83 0.00 0.00 2.52
442 443 2.747446 ACGGCGCAAAATAAGTGAATCT 59.253 40.909 10.83 0.00 0.00 2.40
443 444 3.936453 ACGGCGCAAAATAAGTGAATCTA 59.064 39.130 10.83 0.00 0.00 1.98
444 445 4.201783 ACGGCGCAAAATAAGTGAATCTAC 60.202 41.667 10.83 0.00 0.00 2.59
445 446 4.201773 CGGCGCAAAATAAGTGAATCTACA 60.202 41.667 10.83 0.00 0.00 2.74
446 447 5.028375 GGCGCAAAATAAGTGAATCTACAC 58.972 41.667 10.83 0.00 40.60 2.90
481 482 8.631480 TGTCTACATACATCCGTATATTGAGT 57.369 34.615 0.00 0.00 36.11 3.41
482 483 8.727910 TGTCTACATACATCCGTATATTGAGTC 58.272 37.037 0.00 0.00 36.11 3.36
483 484 8.182881 GTCTACATACATCCGTATATTGAGTCC 58.817 40.741 0.00 0.00 36.11 3.85
484 485 6.911250 ACATACATCCGTATATTGAGTCCA 57.089 37.500 0.00 0.00 36.11 4.02
485 486 7.482169 ACATACATCCGTATATTGAGTCCAT 57.518 36.000 0.00 0.00 36.11 3.41
486 487 7.907389 ACATACATCCGTATATTGAGTCCATT 58.093 34.615 0.00 0.00 36.11 3.16
487 488 8.375506 ACATACATCCGTATATTGAGTCCATTT 58.624 33.333 0.00 0.00 36.11 2.32
488 489 8.659491 CATACATCCGTATATTGAGTCCATTTG 58.341 37.037 0.00 0.00 36.11 2.32
489 490 6.826668 ACATCCGTATATTGAGTCCATTTGA 58.173 36.000 0.00 0.00 0.00 2.69
490 491 7.279615 ACATCCGTATATTGAGTCCATTTGAA 58.720 34.615 0.00 0.00 0.00 2.69
491 492 7.773224 ACATCCGTATATTGAGTCCATTTGAAA 59.227 33.333 0.00 0.00 0.00 2.69
492 493 8.786898 CATCCGTATATTGAGTCCATTTGAAAT 58.213 33.333 0.00 0.00 0.00 2.17
493 494 8.153479 TCCGTATATTGAGTCCATTTGAAATG 57.847 34.615 10.84 10.84 0.00 2.32
494 495 6.857964 CCGTATATTGAGTCCATTTGAAATGC 59.142 38.462 12.26 0.23 0.00 3.56
495 496 6.857964 CGTATATTGAGTCCATTTGAAATGCC 59.142 38.462 12.26 5.23 0.00 4.40
496 497 7.255242 CGTATATTGAGTCCATTTGAAATGCCT 60.255 37.037 12.26 9.70 0.00 4.75
497 498 9.066892 GTATATTGAGTCCATTTGAAATGCCTA 57.933 33.333 12.26 0.00 0.00 3.93
498 499 5.902613 TTGAGTCCATTTGAAATGCCTAG 57.097 39.130 12.26 0.00 0.00 3.02
499 500 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
500 501 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
501 502 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
502 503 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
503 504 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
504 505 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
505 506 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
506 507 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
507 508 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
508 509 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
509 510 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
510 511 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
511 512 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
512 513 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
513 514 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
514 515 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
515 516 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
516 517 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
517 518 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
518 519 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
519 520 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
520 521 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
521 522 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
522 523 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
523 524 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
524 525 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
525 526 1.961133 AGTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
526 527 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
527 528 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
528 529 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
529 530 0.978907 TTTGGGAACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
530 531 0.115745 TTGGGAACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
599 600 2.871096 TACCTCGGCCAAATTCAAGT 57.129 45.000 2.24 0.00 0.00 3.16
796 2700 4.320202 CCGTGAAACAAACCTTATCCACAG 60.320 45.833 0.00 0.00 35.74 3.66
914 2820 2.630592 TTACACACGGCAGCACACGA 62.631 55.000 0.00 0.00 0.00 4.35
922 2828 2.423517 CAGCACACGAAACACGCG 60.424 61.111 3.53 3.53 46.94 6.01
992 2898 2.656069 GGTCGGCAGGGTAAGAGCA 61.656 63.158 0.00 0.00 0.00 4.26
1035 2941 1.003355 CAGCCGTTCCATGGTGTCT 60.003 57.895 12.58 0.45 0.00 3.41
1557 3463 2.053618 GGACTGATCCTCATCCCGG 58.946 63.158 0.00 0.00 42.45 5.73
1560 3466 2.849162 TGATCCTCATCCCGGCCC 60.849 66.667 0.00 0.00 0.00 5.80
1561 3467 4.008933 GATCCTCATCCCGGCCCG 62.009 72.222 0.00 0.00 0.00 6.13
1648 3580 0.104855 TGAGATGCAGCGGATGGTAC 59.895 55.000 0.00 0.00 0.00 3.34
1819 3755 3.290948 TTCTTGCTGGTTAACCACTGT 57.709 42.857 23.69 0.00 42.01 3.55
1848 3784 0.107312 ATCTGCCATCACCAGCACTC 60.107 55.000 0.00 0.00 34.68 3.51
1849 3785 1.748122 CTGCCATCACCAGCACTCC 60.748 63.158 0.00 0.00 34.68 3.85
1850 3786 2.352422 GCCATCACCAGCACTCCA 59.648 61.111 0.00 0.00 0.00 3.86
1851 3787 1.748122 GCCATCACCAGCACTCCAG 60.748 63.158 0.00 0.00 0.00 3.86
1910 3850 1.369091 GGTTGGTGCAGATAGGCGTG 61.369 60.000 0.00 0.00 36.28 5.34
2086 4049 5.073144 GGATAGGGAAGAGAGAGAGAGAGAA 59.927 48.000 0.00 0.00 0.00 2.87
2132 4111 1.983119 GCCCTGATTGGACGATGGGA 61.983 60.000 0.00 0.00 38.35 4.37
2204 4511 3.420893 TGCAAAGTACTAGCATTGCCTT 58.579 40.909 21.47 0.00 45.71 4.35
2282 4589 1.812571 CCTCACGTTTAGCCTTGCAAT 59.187 47.619 0.00 0.00 0.00 3.56
2357 4668 2.161012 TCAAAAACACCGCGTACACAAA 59.839 40.909 4.92 0.00 0.00 2.83
2366 4677 1.640915 CGCGTACACAAAGTCTCGTAC 59.359 52.381 0.00 0.00 32.76 3.67
2367 4678 2.663879 CGCGTACACAAAGTCTCGTACT 60.664 50.000 0.00 0.00 41.49 2.73
2368 4679 2.907392 GCGTACACAAAGTCTCGTACTC 59.093 50.000 0.00 0.00 37.50 2.59
2369 4680 3.486584 CGTACACAAAGTCTCGTACTCC 58.513 50.000 0.00 0.00 37.50 3.85
2370 4681 3.669023 CGTACACAAAGTCTCGTACTCCC 60.669 52.174 0.00 0.00 37.50 4.30
2371 4682 2.595238 ACACAAAGTCTCGTACTCCCT 58.405 47.619 0.00 0.00 37.50 4.20
2372 4683 2.557490 ACACAAAGTCTCGTACTCCCTC 59.443 50.000 0.00 0.00 37.50 4.30
2373 4684 2.094649 CACAAAGTCTCGTACTCCCTCC 60.095 54.545 0.00 0.00 37.50 4.30
2374 4685 2.225066 ACAAAGTCTCGTACTCCCTCCT 60.225 50.000 0.00 0.00 37.50 3.69
2375 4686 2.826725 CAAAGTCTCGTACTCCCTCCTT 59.173 50.000 0.00 0.00 37.50 3.36
2376 4687 2.423446 AGTCTCGTACTCCCTCCTTC 57.577 55.000 0.00 0.00 30.33 3.46
2377 4688 1.064537 AGTCTCGTACTCCCTCCTTCC 60.065 57.143 0.00 0.00 30.33 3.46
2378 4689 0.997363 TCTCGTACTCCCTCCTTCCA 59.003 55.000 0.00 0.00 0.00 3.53
2379 4690 1.569548 TCTCGTACTCCCTCCTTCCAT 59.430 52.381 0.00 0.00 0.00 3.41
2380 4691 1.957877 CTCGTACTCCCTCCTTCCATC 59.042 57.143 0.00 0.00 0.00 3.51
2381 4692 1.569548 TCGTACTCCCTCCTTCCATCT 59.430 52.381 0.00 0.00 0.00 2.90
2382 4693 2.781757 TCGTACTCCCTCCTTCCATCTA 59.218 50.000 0.00 0.00 0.00 1.98
2383 4694 3.398292 TCGTACTCCCTCCTTCCATCTAT 59.602 47.826 0.00 0.00 0.00 1.98
2384 4695 4.600547 TCGTACTCCCTCCTTCCATCTATA 59.399 45.833 0.00 0.00 0.00 1.31
2385 4696 5.253330 TCGTACTCCCTCCTTCCATCTATAT 59.747 44.000 0.00 0.00 0.00 0.86
2386 4697 6.446110 TCGTACTCCCTCCTTCCATCTATATA 59.554 42.308 0.00 0.00 0.00 0.86
2387 4698 7.129038 TCGTACTCCCTCCTTCCATCTATATAT 59.871 40.741 0.00 0.00 0.00 0.86
2388 4699 8.438373 CGTACTCCCTCCTTCCATCTATATATA 58.562 40.741 0.00 0.00 0.00 0.86
2389 4700 9.802039 GTACTCCCTCCTTCCATCTATATATAG 57.198 40.741 12.84 12.84 0.00 1.31
2390 4701 8.660681 ACTCCCTCCTTCCATCTATATATAGA 57.339 38.462 21.86 21.86 43.00 1.98
2391 4702 8.732854 ACTCCCTCCTTCCATCTATATATAGAG 58.267 40.741 23.38 16.11 42.20 2.43
2392 4703 8.893919 TCCCTCCTTCCATCTATATATAGAGA 57.106 38.462 23.38 15.23 42.20 3.10
2393 4704 8.729047 TCCCTCCTTCCATCTATATATAGAGAC 58.271 40.741 23.38 0.00 42.20 3.36
2394 4705 8.732854 CCCTCCTTCCATCTATATATAGAGACT 58.267 40.741 23.38 8.22 42.20 3.24
2470 4781 4.877942 CGTAAGTTACACAAAGCATACCG 58.122 43.478 13.33 0.00 0.00 4.02
2471 4782 4.386652 CGTAAGTTACACAAAGCATACCGT 59.613 41.667 13.33 0.00 0.00 4.83
2472 4783 5.107375 CGTAAGTTACACAAAGCATACCGTT 60.107 40.000 13.33 0.00 0.00 4.44
2473 4784 6.089283 CGTAAGTTACACAAAGCATACCGTTA 59.911 38.462 13.33 0.00 0.00 3.18
2474 4785 6.864360 AAGTTACACAAAGCATACCGTTAA 57.136 33.333 0.00 0.00 0.00 2.01
2475 4786 6.864360 AGTTACACAAAGCATACCGTTAAA 57.136 33.333 0.00 0.00 0.00 1.52
2476 4787 7.261829 AGTTACACAAAGCATACCGTTAAAA 57.738 32.000 0.00 0.00 0.00 1.52
2477 4788 7.357303 AGTTACACAAAGCATACCGTTAAAAG 58.643 34.615 0.00 0.00 0.00 2.27
2478 4789 7.227116 AGTTACACAAAGCATACCGTTAAAAGA 59.773 33.333 0.00 0.00 0.00 2.52
2479 4790 5.997385 ACACAAAGCATACCGTTAAAAGAG 58.003 37.500 0.00 0.00 0.00 2.85
2480 4791 4.851558 CACAAAGCATACCGTTAAAAGAGC 59.148 41.667 0.00 0.00 0.00 4.09
2481 4792 4.760204 ACAAAGCATACCGTTAAAAGAGCT 59.240 37.500 0.00 0.00 0.00 4.09
2482 4793 5.240844 ACAAAGCATACCGTTAAAAGAGCTT 59.759 36.000 0.00 0.00 42.26 3.74
2483 4794 5.959618 AAGCATACCGTTAAAAGAGCTTT 57.040 34.783 0.00 0.00 37.79 3.51
2484 4795 5.547181 AGCATACCGTTAAAAGAGCTTTC 57.453 39.130 0.00 0.00 31.45 2.62
2485 4796 5.001232 AGCATACCGTTAAAAGAGCTTTCA 58.999 37.500 0.00 0.00 31.45 2.69
2486 4797 5.086727 GCATACCGTTAAAAGAGCTTTCAC 58.913 41.667 0.00 0.00 31.45 3.18
2487 4798 5.106673 GCATACCGTTAAAAGAGCTTTCACT 60.107 40.000 0.00 0.00 31.45 3.41
2488 4799 4.813296 ACCGTTAAAAGAGCTTTCACTG 57.187 40.909 0.00 0.00 31.45 3.66
2489 4800 4.448210 ACCGTTAAAAGAGCTTTCACTGA 58.552 39.130 0.00 0.00 31.45 3.41
2490 4801 5.063880 ACCGTTAAAAGAGCTTTCACTGAT 58.936 37.500 0.00 0.00 31.45 2.90
2491 4802 6.228258 ACCGTTAAAAGAGCTTTCACTGATA 58.772 36.000 0.00 0.00 31.45 2.15
2492 4803 6.879458 ACCGTTAAAAGAGCTTTCACTGATAT 59.121 34.615 0.00 0.00 31.45 1.63
2493 4804 8.038944 ACCGTTAAAAGAGCTTTCACTGATATA 58.961 33.333 0.00 0.00 31.45 0.86
2494 4805 8.879759 CCGTTAAAAGAGCTTTCACTGATATAA 58.120 33.333 0.00 0.00 31.45 0.98
2518 4829 8.649973 AATCTTATCAATAGTCAAAGACGGTC 57.350 34.615 0.00 0.00 37.67 4.79
2519 4830 7.406031 TCTTATCAATAGTCAAAGACGGTCT 57.594 36.000 4.45 4.45 37.67 3.85
2520 4831 8.515695 TCTTATCAATAGTCAAAGACGGTCTA 57.484 34.615 11.71 0.00 37.67 2.59
2521 4832 8.622157 TCTTATCAATAGTCAAAGACGGTCTAG 58.378 37.037 11.71 7.58 37.67 2.43
2522 4833 8.515695 TTATCAATAGTCAAAGACGGTCTAGA 57.484 34.615 11.71 9.87 37.67 2.43
2523 4834 6.829229 TCAATAGTCAAAGACGGTCTAGAA 57.171 37.500 11.71 0.00 37.67 2.10
2524 4835 7.223260 TCAATAGTCAAAGACGGTCTAGAAA 57.777 36.000 11.71 5.42 37.67 2.52
2525 4836 7.663827 TCAATAGTCAAAGACGGTCTAGAAAA 58.336 34.615 11.71 5.10 37.67 2.29
2526 4837 8.145767 TCAATAGTCAAAGACGGTCTAGAAAAA 58.854 33.333 11.71 2.90 37.67 1.94
2527 4838 7.886405 ATAGTCAAAGACGGTCTAGAAAAAC 57.114 36.000 11.71 4.79 37.67 2.43
2528 4839 5.667466 AGTCAAAGACGGTCTAGAAAAACA 58.333 37.500 11.71 0.00 37.67 2.83
2529 4840 5.522824 AGTCAAAGACGGTCTAGAAAAACAC 59.477 40.000 11.71 1.26 37.67 3.32
2530 4841 5.292589 GTCAAAGACGGTCTAGAAAAACACA 59.707 40.000 11.71 0.00 0.00 3.72
2531 4842 6.018180 GTCAAAGACGGTCTAGAAAAACACAT 60.018 38.462 11.71 0.00 0.00 3.21
2532 4843 6.540914 TCAAAGACGGTCTAGAAAAACACATT 59.459 34.615 11.71 0.00 0.00 2.71
2533 4844 7.711772 TCAAAGACGGTCTAGAAAAACACATTA 59.288 33.333 11.71 0.00 0.00 1.90
2534 4845 7.653767 AAGACGGTCTAGAAAAACACATTAG 57.346 36.000 11.71 0.00 0.00 1.73
2535 4846 6.164176 AGACGGTCTAGAAAAACACATTAGG 58.836 40.000 9.33 0.00 0.00 2.69
2536 4847 4.694037 ACGGTCTAGAAAAACACATTAGGC 59.306 41.667 0.00 0.00 0.00 3.93
2537 4848 4.094442 CGGTCTAGAAAAACACATTAGGCC 59.906 45.833 0.00 0.00 33.75 5.19
2538 4849 4.398358 GGTCTAGAAAAACACATTAGGCCC 59.602 45.833 0.00 0.00 31.48 5.80
2539 4850 5.254115 GTCTAGAAAAACACATTAGGCCCT 58.746 41.667 0.00 0.00 0.00 5.19
2540 4851 6.412214 GTCTAGAAAAACACATTAGGCCCTA 58.588 40.000 0.00 0.00 0.00 3.53
2541 4852 7.054751 GTCTAGAAAAACACATTAGGCCCTAT 58.945 38.462 0.00 0.00 0.00 2.57
2542 4853 8.208903 GTCTAGAAAAACACATTAGGCCCTATA 58.791 37.037 0.00 0.00 0.00 1.31
2543 4854 8.945193 TCTAGAAAAACACATTAGGCCCTATAT 58.055 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.968848 GCATCTACGAAACAACTTTTGTGAA 59.031 36.000 0.00 0.00 44.59 3.18
2 3 4.375698 CGCATCTACGAAACAACTTTTGTG 59.624 41.667 0.00 0.00 38.60 3.33
5 6 3.608474 GCCGCATCTACGAAACAACTTTT 60.608 43.478 0.00 0.00 34.06 2.27
6 7 2.095919 GCCGCATCTACGAAACAACTTT 60.096 45.455 0.00 0.00 34.06 2.66
7 8 1.463444 GCCGCATCTACGAAACAACTT 59.537 47.619 0.00 0.00 34.06 2.66
8 9 1.076332 GCCGCATCTACGAAACAACT 58.924 50.000 0.00 0.00 34.06 3.16
9 10 0.247145 CGCCGCATCTACGAAACAAC 60.247 55.000 0.00 0.00 34.06 3.32
10 11 1.355796 CCGCCGCATCTACGAAACAA 61.356 55.000 0.00 0.00 34.06 2.83
11 12 1.807981 CCGCCGCATCTACGAAACA 60.808 57.895 0.00 0.00 34.06 2.83
12 13 3.003478 CCGCCGCATCTACGAAAC 58.997 61.111 0.00 0.00 34.06 2.78
13 14 2.007113 TAGCCGCCGCATCTACGAAA 62.007 55.000 0.00 0.00 37.52 3.46
14 15 2.402282 CTAGCCGCCGCATCTACGAA 62.402 60.000 0.00 0.00 37.52 3.85
15 16 2.903350 TAGCCGCCGCATCTACGA 60.903 61.111 0.00 0.00 37.52 3.43
16 17 2.429236 CTAGCCGCCGCATCTACG 60.429 66.667 0.00 0.00 37.52 3.51
17 18 2.049063 CCTAGCCGCCGCATCTAC 60.049 66.667 0.00 0.00 37.52 2.59
18 19 1.682451 AAACCTAGCCGCCGCATCTA 61.682 55.000 0.00 0.00 37.52 1.98
19 20 1.682451 TAAACCTAGCCGCCGCATCT 61.682 55.000 0.00 0.00 37.52 2.90
20 21 0.602905 ATAAACCTAGCCGCCGCATC 60.603 55.000 0.00 0.00 37.52 3.91
21 22 0.682852 TATAAACCTAGCCGCCGCAT 59.317 50.000 0.00 0.00 37.52 4.73
22 23 0.682852 ATATAAACCTAGCCGCCGCA 59.317 50.000 0.00 0.00 37.52 5.69
23 24 1.076332 CATATAAACCTAGCCGCCGC 58.924 55.000 0.00 0.00 0.00 6.53
24 25 2.736144 TCATATAAACCTAGCCGCCG 57.264 50.000 0.00 0.00 0.00 6.46
25 26 5.959618 AATTTCATATAAACCTAGCCGCC 57.040 39.130 0.00 0.00 0.00 6.13
26 27 7.203255 AGAAATTTCATATAAACCTAGCCGC 57.797 36.000 19.99 0.00 0.00 6.53
27 28 7.360101 CGGAGAAATTTCATATAAACCTAGCCG 60.360 40.741 19.99 9.04 0.00 5.52
28 29 7.444487 ACGGAGAAATTTCATATAAACCTAGCC 59.556 37.037 19.99 2.27 0.00 3.93
29 30 8.379457 ACGGAGAAATTTCATATAAACCTAGC 57.621 34.615 19.99 0.00 0.00 3.42
32 33 9.855021 CAAAACGGAGAAATTTCATATAAACCT 57.145 29.630 19.99 0.00 0.00 3.50
33 34 9.634163 ACAAAACGGAGAAATTTCATATAAACC 57.366 29.630 19.99 9.77 0.00 3.27
38 39 9.757227 TTTCAACAAAACGGAGAAATTTCATAT 57.243 25.926 19.99 0.00 0.00 1.78
39 40 9.757227 ATTTCAACAAAACGGAGAAATTTCATA 57.243 25.926 19.99 0.00 35.94 2.15
40 41 8.661352 ATTTCAACAAAACGGAGAAATTTCAT 57.339 26.923 19.99 5.50 35.94 2.57
41 42 7.978975 AGATTTCAACAAAACGGAGAAATTTCA 59.021 29.630 19.99 0.00 38.58 2.69
42 43 8.268738 CAGATTTCAACAAAACGGAGAAATTTC 58.731 33.333 10.33 10.33 38.58 2.17
43 44 7.978975 TCAGATTTCAACAAAACGGAGAAATTT 59.021 29.630 0.00 0.00 38.58 1.82
44 45 7.488322 TCAGATTTCAACAAAACGGAGAAATT 58.512 30.769 0.00 0.00 38.58 1.82
45 46 7.038154 TCAGATTTCAACAAAACGGAGAAAT 57.962 32.000 0.00 0.00 40.47 2.17
46 47 6.443934 TCAGATTTCAACAAAACGGAGAAA 57.556 33.333 0.00 0.00 33.33 2.52
47 48 6.633500 ATCAGATTTCAACAAAACGGAGAA 57.367 33.333 0.00 0.00 0.00 2.87
48 49 6.633500 AATCAGATTTCAACAAAACGGAGA 57.367 33.333 0.00 0.00 0.00 3.71
49 50 6.917477 TCAAATCAGATTTCAACAAAACGGAG 59.083 34.615 5.32 0.00 0.00 4.63
50 51 6.800543 TCAAATCAGATTTCAACAAAACGGA 58.199 32.000 5.32 0.00 0.00 4.69
51 52 7.462109 TTCAAATCAGATTTCAACAAAACGG 57.538 32.000 5.32 0.00 0.00 4.44
52 53 9.360514 CATTTCAAATCAGATTTCAACAAAACG 57.639 29.630 5.32 0.00 0.00 3.60
60 61 9.389755 TCGGTATACATTTCAAATCAGATTTCA 57.610 29.630 5.32 0.00 0.00 2.69
61 62 9.651718 GTCGGTATACATTTCAAATCAGATTTC 57.348 33.333 5.32 0.00 0.00 2.17
62 63 9.173021 TGTCGGTATACATTTCAAATCAGATTT 57.827 29.630 5.01 2.20 0.00 2.17
63 64 8.731275 TGTCGGTATACATTTCAAATCAGATT 57.269 30.769 5.01 0.00 0.00 2.40
64 65 8.777413 CATGTCGGTATACATTTCAAATCAGAT 58.223 33.333 5.01 0.00 38.01 2.90
65 66 7.226523 CCATGTCGGTATACATTTCAAATCAGA 59.773 37.037 5.01 0.00 38.01 3.27
66 67 7.355017 CCATGTCGGTATACATTTCAAATCAG 58.645 38.462 5.01 0.00 38.01 2.90
67 68 7.258022 CCATGTCGGTATACATTTCAAATCA 57.742 36.000 5.01 0.00 38.01 2.57
83 84 2.120909 GGCCATCCAACCATGTCGG 61.121 63.158 0.00 0.00 42.50 4.79
84 85 2.472059 CGGCCATCCAACCATGTCG 61.472 63.158 2.24 0.00 0.00 4.35
85 86 2.120909 CCGGCCATCCAACCATGTC 61.121 63.158 2.24 0.00 0.00 3.06
86 87 2.044053 CCGGCCATCCAACCATGT 60.044 61.111 2.24 0.00 0.00 3.21
87 88 1.666209 GAACCGGCCATCCAACCATG 61.666 60.000 0.00 0.00 0.00 3.66
88 89 1.379843 GAACCGGCCATCCAACCAT 60.380 57.895 0.00 0.00 0.00 3.55
89 90 2.034999 GAACCGGCCATCCAACCA 59.965 61.111 0.00 0.00 0.00 3.67
90 91 2.754254 GGAACCGGCCATCCAACC 60.754 66.667 14.82 0.36 35.71 3.77
91 92 2.754254 GGGAACCGGCCATCCAAC 60.754 66.667 19.72 3.66 40.86 3.77
103 104 2.737376 GGACACTGACGCGGGAAC 60.737 66.667 12.47 0.00 0.00 3.62
104 105 4.351938 CGGACACTGACGCGGGAA 62.352 66.667 12.47 0.00 0.00 3.97
117 118 1.006571 TGAAGAACAGTCCGCGGAC 60.007 57.895 43.92 43.92 44.86 4.79
118 119 1.006571 GTGAAGAACAGTCCGCGGA 60.007 57.895 27.28 27.28 0.00 5.54
119 120 2.027625 GGTGAAGAACAGTCCGCGG 61.028 63.158 22.12 22.12 0.00 6.46
120 121 0.878523 TTGGTGAAGAACAGTCCGCG 60.879 55.000 0.00 0.00 0.00 6.46
121 122 1.464997 GATTGGTGAAGAACAGTCCGC 59.535 52.381 0.00 0.00 0.00 5.54
122 123 2.076863 GGATTGGTGAAGAACAGTCCG 58.923 52.381 0.00 0.00 34.47 4.79
123 124 2.076863 CGGATTGGTGAAGAACAGTCC 58.923 52.381 0.00 0.00 39.36 3.85
124 125 1.464997 GCGGATTGGTGAAGAACAGTC 59.535 52.381 0.00 0.00 0.00 3.51
125 126 1.523758 GCGGATTGGTGAAGAACAGT 58.476 50.000 0.00 0.00 0.00 3.55
126 127 0.443869 CGCGGATTGGTGAAGAACAG 59.556 55.000 0.00 0.00 0.00 3.16
127 128 0.953471 CCGCGGATTGGTGAAGAACA 60.953 55.000 24.07 0.00 0.00 3.18
128 129 0.672401 TCCGCGGATTGGTGAAGAAC 60.672 55.000 27.28 0.00 0.00 3.01
129 130 0.035598 TTCCGCGGATTGGTGAAGAA 59.964 50.000 31.56 6.73 0.00 2.52
130 131 0.035598 TTTCCGCGGATTGGTGAAGA 59.964 50.000 31.56 7.62 0.00 2.87
131 132 0.447801 CTTTCCGCGGATTGGTGAAG 59.552 55.000 31.56 23.52 0.00 3.02
132 133 0.250553 ACTTTCCGCGGATTGGTGAA 60.251 50.000 31.56 18.09 0.00 3.18
133 134 0.250553 AACTTTCCGCGGATTGGTGA 60.251 50.000 31.56 10.33 0.00 4.02
134 135 1.129811 GTAACTTTCCGCGGATTGGTG 59.870 52.381 31.56 18.62 0.00 4.17
135 136 1.270947 TGTAACTTTCCGCGGATTGGT 60.271 47.619 31.56 24.54 0.00 3.67
136 137 1.396996 CTGTAACTTTCCGCGGATTGG 59.603 52.381 31.56 22.78 0.00 3.16
137 138 2.073816 ACTGTAACTTTCCGCGGATTG 58.926 47.619 31.56 25.45 0.00 2.67
138 139 2.073816 CACTGTAACTTTCCGCGGATT 58.926 47.619 31.56 22.79 0.00 3.01
139 140 1.722011 CACTGTAACTTTCCGCGGAT 58.278 50.000 31.56 17.19 0.00 4.18
140 141 0.947180 GCACTGTAACTTTCCGCGGA 60.947 55.000 27.28 27.28 0.00 5.54
141 142 1.495951 GCACTGTAACTTTCCGCGG 59.504 57.895 22.12 22.12 0.00 6.46
142 143 1.495951 GGCACTGTAACTTTCCGCG 59.504 57.895 0.00 0.00 0.00 6.46
143 144 1.873863 GGGCACTGTAACTTTCCGC 59.126 57.895 0.00 0.00 0.00 5.54
144 145 1.296056 CCGGGCACTGTAACTTTCCG 61.296 60.000 0.00 0.00 36.23 4.30
145 146 1.583495 GCCGGGCACTGTAACTTTCC 61.583 60.000 15.62 0.00 0.00 3.13
146 147 0.605589 AGCCGGGCACTGTAACTTTC 60.606 55.000 23.09 0.00 0.00 2.62
147 148 0.179001 AAGCCGGGCACTGTAACTTT 60.179 50.000 23.09 0.00 0.00 2.66
148 149 0.889186 CAAGCCGGGCACTGTAACTT 60.889 55.000 23.09 0.31 0.00 2.66
149 150 1.302511 CAAGCCGGGCACTGTAACT 60.303 57.895 23.09 0.00 0.00 2.24
150 151 2.332654 CCAAGCCGGGCACTGTAAC 61.333 63.158 23.09 0.00 0.00 2.50
151 152 2.033448 CCAAGCCGGGCACTGTAA 59.967 61.111 23.09 0.00 0.00 2.41
161 162 3.912745 AACGCTAACCCCCAAGCCG 62.913 63.158 0.00 0.00 35.22 5.52
162 163 2.035155 AACGCTAACCCCCAAGCC 59.965 61.111 0.00 0.00 35.22 4.35
163 164 2.340328 CCAACGCTAACCCCCAAGC 61.340 63.158 0.00 0.00 35.33 4.01
164 165 0.676782 CTCCAACGCTAACCCCCAAG 60.677 60.000 0.00 0.00 0.00 3.61
165 166 1.377229 CTCCAACGCTAACCCCCAA 59.623 57.895 0.00 0.00 0.00 4.12
166 167 2.598787 CCTCCAACGCTAACCCCCA 61.599 63.158 0.00 0.00 0.00 4.96
167 168 2.271173 CCTCCAACGCTAACCCCC 59.729 66.667 0.00 0.00 0.00 5.40
168 169 1.376812 CACCTCCAACGCTAACCCC 60.377 63.158 0.00 0.00 0.00 4.95
169 170 1.376812 CCACCTCCAACGCTAACCC 60.377 63.158 0.00 0.00 0.00 4.11
170 171 2.038837 GCCACCTCCAACGCTAACC 61.039 63.158 0.00 0.00 0.00 2.85
171 172 2.038837 GGCCACCTCCAACGCTAAC 61.039 63.158 0.00 0.00 0.00 2.34
172 173 0.905809 TAGGCCACCTCCAACGCTAA 60.906 55.000 5.01 0.00 34.61 3.09
173 174 0.905809 TTAGGCCACCTCCAACGCTA 60.906 55.000 5.01 0.00 34.61 4.26
174 175 2.221299 TTAGGCCACCTCCAACGCT 61.221 57.895 5.01 0.00 34.61 5.07
175 176 2.038837 GTTAGGCCACCTCCAACGC 61.039 63.158 5.01 0.00 34.61 4.84
176 177 1.740296 CGTTAGGCCACCTCCAACG 60.740 63.158 5.01 6.93 35.79 4.10
177 178 0.252197 ATCGTTAGGCCACCTCCAAC 59.748 55.000 5.01 0.00 34.61 3.77
178 179 1.483415 GTATCGTTAGGCCACCTCCAA 59.517 52.381 5.01 0.00 34.61 3.53
179 180 1.117150 GTATCGTTAGGCCACCTCCA 58.883 55.000 5.01 0.00 34.61 3.86
180 181 1.068741 CTGTATCGTTAGGCCACCTCC 59.931 57.143 5.01 0.00 34.61 4.30
181 182 1.755380 ACTGTATCGTTAGGCCACCTC 59.245 52.381 5.01 0.00 34.61 3.85
182 183 1.861982 ACTGTATCGTTAGGCCACCT 58.138 50.000 5.01 0.00 37.71 4.00
183 184 2.685850 AACTGTATCGTTAGGCCACC 57.314 50.000 5.01 0.00 0.00 4.61
208 209 0.960364 ATTGCGGTAACTGGGCAGTG 60.960 55.000 0.00 0.00 41.58 3.66
215 216 5.751680 CAGATCCATTTATTGCGGTAACTG 58.248 41.667 0.00 0.00 0.00 3.16
216 217 4.275936 GCAGATCCATTTATTGCGGTAACT 59.724 41.667 0.00 0.00 0.00 2.24
223 224 2.288640 GGCCAGCAGATCCATTTATTGC 60.289 50.000 0.00 0.00 35.09 3.56
300 301 1.807139 CCGCAAAAAGAAAATGGGGG 58.193 50.000 0.00 0.00 41.88 5.40
333 334 0.112218 CCAACCAACCCATGAGACCA 59.888 55.000 0.00 0.00 0.00 4.02
347 348 2.556840 TAGCTGCTGGCCATCCAACC 62.557 60.000 13.43 0.99 42.91 3.77
369 370 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
370 371 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
371 372 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
372 373 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
373 374 9.211485 TCTAAAAAGACAAGTATTTAGGAACGG 57.789 33.333 0.00 0.00 36.48 4.44
398 399 9.916397 CCGTATGTAGTCATTTGTTAAAATCTC 57.084 33.333 0.00 0.00 33.59 2.75
399 400 8.395633 GCCGTATGTAGTCATTTGTTAAAATCT 58.604 33.333 0.00 0.00 33.59 2.40
400 401 7.372396 CGCCGTATGTAGTCATTTGTTAAAATC 59.628 37.037 0.00 0.00 33.59 2.17
401 402 7.184106 CGCCGTATGTAGTCATTTGTTAAAAT 58.816 34.615 0.00 0.00 36.39 1.82
402 403 6.535811 CGCCGTATGTAGTCATTTGTTAAAA 58.464 36.000 0.00 0.00 35.70 1.52
403 404 5.446206 GCGCCGTATGTAGTCATTTGTTAAA 60.446 40.000 0.00 0.00 35.70 1.52
404 405 4.033129 GCGCCGTATGTAGTCATTTGTTAA 59.967 41.667 0.00 0.00 35.70 2.01
405 406 3.552699 GCGCCGTATGTAGTCATTTGTTA 59.447 43.478 0.00 0.00 35.70 2.41
406 407 2.350498 GCGCCGTATGTAGTCATTTGTT 59.650 45.455 0.00 0.00 35.70 2.83
407 408 1.931172 GCGCCGTATGTAGTCATTTGT 59.069 47.619 0.00 0.00 35.70 2.83
408 409 1.930503 TGCGCCGTATGTAGTCATTTG 59.069 47.619 4.18 0.00 35.70 2.32
409 410 2.303163 TGCGCCGTATGTAGTCATTT 57.697 45.000 4.18 0.00 35.70 2.32
410 411 2.303163 TTGCGCCGTATGTAGTCATT 57.697 45.000 4.18 0.00 35.70 2.57
411 412 2.303163 TTTGCGCCGTATGTAGTCAT 57.697 45.000 4.18 0.00 38.00 3.06
412 413 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
413 414 4.269363 ACTTATTTTGCGCCGTATGTAGTC 59.731 41.667 4.18 0.00 0.00 2.59
414 415 4.033587 CACTTATTTTGCGCCGTATGTAGT 59.966 41.667 4.18 0.00 0.00 2.73
415 416 4.269123 TCACTTATTTTGCGCCGTATGTAG 59.731 41.667 4.18 0.00 0.00 2.74
416 417 4.182339 TCACTTATTTTGCGCCGTATGTA 58.818 39.130 4.18 0.00 0.00 2.29
417 418 3.004171 TCACTTATTTTGCGCCGTATGT 58.996 40.909 4.18 0.00 0.00 2.29
418 419 3.666883 TCACTTATTTTGCGCCGTATG 57.333 42.857 4.18 0.00 0.00 2.39
419 420 4.574828 AGATTCACTTATTTTGCGCCGTAT 59.425 37.500 4.18 0.00 0.00 3.06
420 421 3.936453 AGATTCACTTATTTTGCGCCGTA 59.064 39.130 4.18 0.00 0.00 4.02
421 422 2.747446 AGATTCACTTATTTTGCGCCGT 59.253 40.909 4.18 0.00 0.00 5.68
422 423 3.405170 AGATTCACTTATTTTGCGCCG 57.595 42.857 4.18 0.00 0.00 6.46
423 424 5.028375 GTGTAGATTCACTTATTTTGCGCC 58.972 41.667 4.18 0.00 35.68 6.53
424 425 5.869350 AGTGTAGATTCACTTATTTTGCGC 58.131 37.500 0.00 0.00 44.92 6.09
455 456 9.244292 ACTCAATATACGGATGTATGTAGACAT 57.756 33.333 0.08 0.08 41.37 3.06
456 457 8.631480 ACTCAATATACGGATGTATGTAGACA 57.369 34.615 0.00 0.00 41.37 3.41
457 458 8.182881 GGACTCAATATACGGATGTATGTAGAC 58.817 40.741 0.00 0.00 41.37 2.59
458 459 7.886446 TGGACTCAATATACGGATGTATGTAGA 59.114 37.037 0.00 0.00 41.37 2.59
459 460 8.051901 TGGACTCAATATACGGATGTATGTAG 57.948 38.462 0.00 0.00 41.37 2.74
460 461 8.589701 ATGGACTCAATATACGGATGTATGTA 57.410 34.615 0.00 0.00 41.37 2.29
461 462 6.911250 TGGACTCAATATACGGATGTATGT 57.089 37.500 0.00 0.00 41.37 2.29
462 463 8.659491 CAAATGGACTCAATATACGGATGTATG 58.341 37.037 0.00 0.00 41.37 2.39
463 464 8.593679 TCAAATGGACTCAATATACGGATGTAT 58.406 33.333 0.00 0.00 43.62 2.29
464 465 7.958088 TCAAATGGACTCAATATACGGATGTA 58.042 34.615 0.00 0.00 34.45 2.29
465 466 6.826668 TCAAATGGACTCAATATACGGATGT 58.173 36.000 0.00 0.00 0.00 3.06
466 467 7.728847 TTCAAATGGACTCAATATACGGATG 57.271 36.000 0.00 0.00 0.00 3.51
467 468 8.786898 CATTTCAAATGGACTCAATATACGGAT 58.213 33.333 1.73 0.00 0.00 4.18
468 469 7.255104 GCATTTCAAATGGACTCAATATACGGA 60.255 37.037 12.14 0.00 0.00 4.69
469 470 6.857964 GCATTTCAAATGGACTCAATATACGG 59.142 38.462 12.14 0.00 0.00 4.02
470 471 6.857964 GGCATTTCAAATGGACTCAATATACG 59.142 38.462 12.14 0.00 0.00 3.06
471 472 7.945134 AGGCATTTCAAATGGACTCAATATAC 58.055 34.615 12.14 0.00 0.00 1.47
472 473 9.288576 CTAGGCATTTCAAATGGACTCAATATA 57.711 33.333 12.14 0.00 0.00 0.86
473 474 8.000709 TCTAGGCATTTCAAATGGACTCAATAT 58.999 33.333 12.14 0.00 0.00 1.28
474 475 7.345691 TCTAGGCATTTCAAATGGACTCAATA 58.654 34.615 12.14 0.00 0.00 1.90
475 476 6.189859 TCTAGGCATTTCAAATGGACTCAAT 58.810 36.000 12.14 0.00 0.00 2.57
476 477 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
477 478 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
478 479 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
479 480 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
480 481 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
481 482 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
482 483 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
483 484 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
484 485 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
485 486 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
486 487 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
487 488 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
488 489 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
489 490 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
490 491 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
491 492 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
492 493 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
493 494 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
494 495 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
495 496 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
496 497 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
497 498 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
498 499 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
499 500 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
500 501 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
501 502 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
502 503 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
503 504 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
504 505 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
505 506 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
506 507 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
507 508 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
508 509 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
509 510 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
510 511 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
511 512 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
512 513 1.002069 TAGTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
513 514 1.962100 CATAGTACTCCCTCCGTTCCC 59.038 57.143 0.00 0.00 0.00 3.97
514 515 2.664015 ACATAGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
515 516 6.237154 AGTATACATAGTACTCCCTCCGTTC 58.763 44.000 0.00 0.00 0.00 3.95
516 517 6.198237 AGTATACATAGTACTCCCTCCGTT 57.802 41.667 0.00 0.00 0.00 4.44
517 518 5.803552 GAGTATACATAGTACTCCCTCCGT 58.196 45.833 0.00 0.00 41.27 4.69
524 525 6.879276 TGCACAGGAGTATACATAGTACTC 57.121 41.667 0.00 5.04 44.60 2.59
525 526 7.655521 TTTGCACAGGAGTATACATAGTACT 57.344 36.000 5.50 0.00 35.20 2.73
526 527 7.224167 GGTTTTGCACAGGAGTATACATAGTAC 59.776 40.741 5.50 0.00 0.00 2.73
527 528 7.270047 GGTTTTGCACAGGAGTATACATAGTA 58.730 38.462 5.50 0.00 0.00 1.82
528 529 6.113411 GGTTTTGCACAGGAGTATACATAGT 58.887 40.000 5.50 0.00 0.00 2.12
529 530 5.234329 CGGTTTTGCACAGGAGTATACATAG 59.766 44.000 5.50 0.00 0.00 2.23
530 531 5.113383 CGGTTTTGCACAGGAGTATACATA 58.887 41.667 5.50 0.00 0.00 2.29
599 600 1.833630 AGACGATGGAGCCAGAAATGA 59.166 47.619 0.00 0.00 0.00 2.57
711 2609 3.058160 GCCATCGTTGCTGCCAGT 61.058 61.111 0.00 0.00 0.00 4.00
712 2610 3.047718 CTGCCATCGTTGCTGCCAG 62.048 63.158 0.00 0.00 0.00 4.85
713 2611 3.057548 CTGCCATCGTTGCTGCCA 61.058 61.111 0.00 0.00 0.00 4.92
769 2673 4.517832 GGATAAGGTTTGTTTCACGGAGTT 59.482 41.667 0.00 0.00 41.61 3.01
914 2820 1.943693 GCAATGTGTGCGCGTGTTT 60.944 52.632 8.43 0.00 45.10 2.83
981 2887 2.572284 GTCGCGTGCTCTTACCCT 59.428 61.111 5.77 0.00 0.00 4.34
1561 3467 4.525949 GTAAGGGGACGGCGAGGC 62.526 72.222 16.62 1.71 0.00 4.70
1564 3470 0.751277 TAATCGTAAGGGGACGGCGA 60.751 55.000 16.62 0.00 43.12 5.54
1601 3519 4.594123 TCACCGATCACAAACTAGACAA 57.406 40.909 0.00 0.00 0.00 3.18
1603 3521 4.744570 TCATCACCGATCACAAACTAGAC 58.255 43.478 0.00 0.00 0.00 2.59
1605 3523 4.998788 TCTCATCACCGATCACAAACTAG 58.001 43.478 0.00 0.00 0.00 2.57
1648 3580 4.407296 ACCAGAGGCTTAACCAATCTCTAG 59.593 45.833 0.00 0.00 43.14 2.43
1702 3638 6.348213 GCTGGTTGTTTTAGTGGTAGTACATG 60.348 42.308 2.06 0.00 0.00 3.21
1819 3755 6.438186 TGGTGATGGCAGATCATTATAGAA 57.562 37.500 0.00 0.00 0.00 2.10
1848 3784 6.201806 GCAGATCATTTTAGTAGTACTGCTGG 59.798 42.308 22.20 7.66 42.85 4.85
1849 3785 6.201806 GGCAGATCATTTTAGTAGTACTGCTG 59.798 42.308 22.20 7.22 44.65 4.41
1850 3786 6.127054 TGGCAGATCATTTTAGTAGTACTGCT 60.127 38.462 17.94 17.94 44.65 4.24
1851 3787 6.018669 GTGGCAGATCATTTTAGTAGTACTGC 60.019 42.308 13.29 3.75 44.57 4.40
2086 4049 3.774216 CCCACTTTCTCCATCTCTCTCTT 59.226 47.826 0.00 0.00 0.00 2.85
2204 4511 8.287503 GTCGCTATTTTTAGTCCTTCTTTTTGA 58.712 33.333 0.00 0.00 0.00 2.69
2282 4589 2.026729 TGATCTAAACCATCGGTTGCCA 60.027 45.455 0.00 0.00 46.20 4.92
2357 4668 1.064537 GGAAGGAGGGAGTACGAGACT 60.065 57.143 0.00 0.00 42.90 3.24
2366 4677 8.954729 TCTCTATATATAGATGGAAGGAGGGAG 58.045 40.741 20.31 6.67 38.60 4.30
2367 4678 8.729047 GTCTCTATATATAGATGGAAGGAGGGA 58.271 40.741 20.31 9.17 38.60 4.20
2368 4679 8.732854 AGTCTCTATATATAGATGGAAGGAGGG 58.267 40.741 20.31 7.27 38.60 4.30
2438 4749 8.814235 GCTTTGTGTAACTTACGTGTCATATAT 58.186 33.333 0.00 0.00 38.04 0.86
2439 4750 7.813627 TGCTTTGTGTAACTTACGTGTCATATA 59.186 33.333 0.00 0.00 38.04 0.86
2440 4751 6.647481 TGCTTTGTGTAACTTACGTGTCATAT 59.353 34.615 0.00 0.00 38.04 1.78
2441 4752 5.984323 TGCTTTGTGTAACTTACGTGTCATA 59.016 36.000 0.00 0.00 38.04 2.15
2442 4753 4.812091 TGCTTTGTGTAACTTACGTGTCAT 59.188 37.500 0.00 0.00 38.04 3.06
2443 4754 4.182339 TGCTTTGTGTAACTTACGTGTCA 58.818 39.130 0.00 0.00 38.04 3.58
2444 4755 4.782252 TGCTTTGTGTAACTTACGTGTC 57.218 40.909 0.00 0.00 38.04 3.67
2445 4756 5.178067 GGTATGCTTTGTGTAACTTACGTGT 59.822 40.000 0.00 0.00 38.04 4.49
2446 4757 5.614760 GGTATGCTTTGTGTAACTTACGTG 58.385 41.667 0.00 0.00 38.04 4.49
2447 4758 4.386652 CGGTATGCTTTGTGTAACTTACGT 59.613 41.667 0.00 0.00 38.04 3.57
2448 4759 4.386652 ACGGTATGCTTTGTGTAACTTACG 59.613 41.667 0.00 0.00 38.04 3.18
2449 4760 5.851047 ACGGTATGCTTTGTGTAACTTAC 57.149 39.130 0.00 0.00 38.04 2.34
2450 4761 7.959689 TTAACGGTATGCTTTGTGTAACTTA 57.040 32.000 0.00 0.00 38.04 2.24
2451 4762 6.864360 TTAACGGTATGCTTTGTGTAACTT 57.136 33.333 0.00 0.00 38.04 2.66
2452 4763 6.864360 TTTAACGGTATGCTTTGTGTAACT 57.136 33.333 0.00 0.00 38.04 2.24
2453 4764 7.354257 TCTTTTAACGGTATGCTTTGTGTAAC 58.646 34.615 0.00 0.00 37.35 2.50
2454 4765 7.493743 TCTTTTAACGGTATGCTTTGTGTAA 57.506 32.000 0.00 0.00 0.00 2.41
2455 4766 6.347888 GCTCTTTTAACGGTATGCTTTGTGTA 60.348 38.462 0.00 0.00 0.00 2.90
2456 4767 5.562113 GCTCTTTTAACGGTATGCTTTGTGT 60.562 40.000 0.00 0.00 0.00 3.72
2457 4768 4.851558 GCTCTTTTAACGGTATGCTTTGTG 59.148 41.667 0.00 0.00 0.00 3.33
2458 4769 4.760204 AGCTCTTTTAACGGTATGCTTTGT 59.240 37.500 0.00 0.00 0.00 2.83
2459 4770 5.296813 AGCTCTTTTAACGGTATGCTTTG 57.703 39.130 0.00 0.00 0.00 2.77
2460 4771 5.959618 AAGCTCTTTTAACGGTATGCTTT 57.040 34.783 0.00 0.00 36.30 3.51
2461 4772 5.472137 TGAAAGCTCTTTTAACGGTATGCTT 59.528 36.000 0.00 0.00 40.59 3.91
2462 4773 5.001232 TGAAAGCTCTTTTAACGGTATGCT 58.999 37.500 0.00 0.00 32.11 3.79
2463 4774 5.086727 GTGAAAGCTCTTTTAACGGTATGC 58.913 41.667 0.00 0.00 32.11 3.14
2464 4775 6.147164 TCAGTGAAAGCTCTTTTAACGGTATG 59.853 38.462 0.00 0.00 32.11 2.39
2465 4776 6.228258 TCAGTGAAAGCTCTTTTAACGGTAT 58.772 36.000 0.00 0.00 32.11 2.73
2466 4777 5.603596 TCAGTGAAAGCTCTTTTAACGGTA 58.396 37.500 0.00 0.00 32.11 4.02
2467 4778 4.448210 TCAGTGAAAGCTCTTTTAACGGT 58.552 39.130 0.00 0.00 32.11 4.83
2468 4779 5.613358 ATCAGTGAAAGCTCTTTTAACGG 57.387 39.130 0.00 1.05 32.11 4.44
2492 4803 9.745880 GACCGTCTTTGACTATTGATAAGATTA 57.254 33.333 0.00 0.00 0.00 1.75
2493 4804 8.478877 AGACCGTCTTTGACTATTGATAAGATT 58.521 33.333 0.00 0.00 0.00 2.40
2494 4805 8.012957 AGACCGTCTTTGACTATTGATAAGAT 57.987 34.615 0.00 0.00 0.00 2.40
2495 4806 7.406031 AGACCGTCTTTGACTATTGATAAGA 57.594 36.000 0.00 0.00 0.00 2.10
2496 4807 8.622157 TCTAGACCGTCTTTGACTATTGATAAG 58.378 37.037 6.31 0.00 0.00 1.73
2497 4808 8.515695 TCTAGACCGTCTTTGACTATTGATAA 57.484 34.615 6.31 0.00 0.00 1.75
2498 4809 8.515695 TTCTAGACCGTCTTTGACTATTGATA 57.484 34.615 6.31 0.00 0.00 2.15
2499 4810 7.406031 TTCTAGACCGTCTTTGACTATTGAT 57.594 36.000 6.31 0.00 0.00 2.57
2500 4811 6.829229 TTCTAGACCGTCTTTGACTATTGA 57.171 37.500 6.31 0.00 0.00 2.57
2501 4812 7.884816 TTTTCTAGACCGTCTTTGACTATTG 57.115 36.000 6.31 0.00 0.00 1.90
2502 4813 7.929785 TGTTTTTCTAGACCGTCTTTGACTATT 59.070 33.333 6.31 0.00 0.00 1.73
2503 4814 7.384387 GTGTTTTTCTAGACCGTCTTTGACTAT 59.616 37.037 6.31 0.00 0.00 2.12
2504 4815 6.698766 GTGTTTTTCTAGACCGTCTTTGACTA 59.301 38.462 6.31 0.00 0.00 2.59
2505 4816 5.522824 GTGTTTTTCTAGACCGTCTTTGACT 59.477 40.000 6.31 0.00 0.00 3.41
2506 4817 5.292589 TGTGTTTTTCTAGACCGTCTTTGAC 59.707 40.000 6.31 0.00 0.00 3.18
2507 4818 5.421277 TGTGTTTTTCTAGACCGTCTTTGA 58.579 37.500 6.31 3.28 0.00 2.69
2508 4819 5.728351 TGTGTTTTTCTAGACCGTCTTTG 57.272 39.130 6.31 0.81 0.00 2.77
2509 4820 6.937436 AATGTGTTTTTCTAGACCGTCTTT 57.063 33.333 6.31 0.00 0.00 2.52
2510 4821 6.649557 CCTAATGTGTTTTTCTAGACCGTCTT 59.350 38.462 6.31 0.00 0.00 3.01
2511 4822 6.164176 CCTAATGTGTTTTTCTAGACCGTCT 58.836 40.000 6.25 6.25 0.00 4.18
2512 4823 5.163884 GCCTAATGTGTTTTTCTAGACCGTC 60.164 44.000 0.00 0.00 0.00 4.79
2513 4824 4.694037 GCCTAATGTGTTTTTCTAGACCGT 59.306 41.667 0.00 0.00 0.00 4.83
2514 4825 4.094442 GGCCTAATGTGTTTTTCTAGACCG 59.906 45.833 0.00 0.00 0.00 4.79
2515 4826 4.398358 GGGCCTAATGTGTTTTTCTAGACC 59.602 45.833 0.84 0.00 0.00 3.85
2516 4827 5.254115 AGGGCCTAATGTGTTTTTCTAGAC 58.746 41.667 2.82 0.00 0.00 2.59
2517 4828 5.514500 AGGGCCTAATGTGTTTTTCTAGA 57.486 39.130 2.82 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.