>input_sequence_76621
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-------------------------ATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCTGCGCACCGGCTCTTCGCGC
CGGCGCCGGCGCGCACCATGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGCGCG
GCGCTGGCGTCGTCCCCGCTGGCCGACACGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCCGCG
CGCCGCGGCGCCACGAGATGCCGCCGGTGGCGGTGGAGGCGTCGGGGCCCCGGCGTCGCTGCCTGTCAACATCCCCGACT
GGTCCAAGATCCTGGGGTCGGAGTACGGCGGGGGCAGCGCCGGCTCGGGGCGGTGGCCGTCGGACGATCGCGGGGACGCG
TACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTTCTC
CGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCGGCT
TCCAGGACTGA---------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G174100
TTCACAAAAGTTGTTTCGTAGATGCGGCGGCTAGGTTTATATGAAATTTCTCCGTTTTGTTGAAATCTGATTTGAAATGT
ATACCGACATGGTTGGATGGCCGGTTCCCGCGTCAGTGTCCGCGGACTGTTCTTCACCAATCCGCGGAAAGTTACAGTGC
CCGGCTTGGGGGTTAGCGTTGGAGGTGGCCTAACGATACAGTTTTTTTCACTGCCCAGTTACCGCAATAAATGGATCTGC
TGGCCTCTTCACTCTTTACGCATGGCAGTGATTTGCCCACGGATTTCAAAGAGGACACGACCCCCATTTTCTTTTTGCGG
GCAGAAGAGGACATGGTCTCATGGGTTGGTTGGATGGCCAGCAGCTACTCCCTCCGTTCCTAAATACTTGTCTTTTTAGA
GATTTTAACAAATGACTACATACGGCGCAAAATAAGTGAATCTACACTTTAAAATATGTCTACATACATCCGTATATTGA
GTCCATTTGAAATGCCTAGAAAGACAAGTATTTGGGAACGGAGGGAGTACTATGTATACTCCTGTGCAAAACCGCAAGCG
AAGCAAATACACCGCGCCCATACCTCGGCCAAATTCAAGTCATTTCTGGCTCCATCGTCTCCATTCACTCGCAAACAACG
AAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGGCACACTGGCATCTTAAAAAAAATGCAG------------
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---------------------------------------------TACACT------GGCAGCAACGATGGCAGACGCCG
TAAATATGCTCAACCAGCCCCCCCATTAAAGTAACTCCGTGAAACAAACCTTATCCACAGCACT--CCCGTCCCCCTCCC
GCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCATCGCGGTTCACATACACTT
TTACACACGGCAGCACACGAAACACGCGCACACATTGCTTGTGCGCCTCCTCCGCCGGATCACGAGCCAACCGCACCGAG
GTCGGCAGGGTAAGAGCACGCGACGATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCTGCGCACCGGCTCTTCGCGC
CGGCGCCGGCGCGCACCATGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGCGCG
GCGCTGGCGTCGTCCCCGCTGGCCGACACGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCCGCG
CGCCGCGGCGCCACGAGATGCCGCCGGTGGCGGTGGAGGCGTCGGGGCCCCGGCGTCGCTGCCTGTCAACATCCCCGACT
GGTCCAAGATCCTGGGGTCGGAGTACGGCGGGGGCAGCGCCGGCTCGGGGCGGTGGCCGTCGGACGATCGCGGGGACGCG
TACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTTCTC
CGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCGGCT
TCCAGGACTGATCCTCATCCCGGCCCGCCTCG------------CCGTCCCCTTACGATTAATTTGATGAGTTTTTTTTT
GTC----------TAGTTTGTGATCGGTGATGAGAATGAGATGCAGCGGATG----GTACTAGAGATTGGTTAAGCCTCT
GGTTTTGGCAGTTTTCCCCGGAGA----GGCTGGCTCCATGTACTACCACTAAAACAACCAGCGAATCGATTGCTCCTTA
ACAAAGATGATGAGTACGAGTTGTACCAGCAATGTCCATGTGCCGTCCACTGATTTCTTGCTGGTTAACCACTGTTCTAT
AATGATCTGCCATCACCAGCACTCCAGC----AGTACTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGGTGCA
GATAGGCGTGGTAGTACTA---TTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTATTGGC
AGAGCGGAC--TCGATTTAAAAAG------------------GGAGTTGGGGGCAGATTTGGACGTGCGGAGAATAAAAT
TTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGAGAGAGAAAGA----------------GAGAGATGGAGA
AAGTGGGAGGGGCCCTGATTGGACGATGGGA-CGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCCCGCATACTTA
ACTGCAA-------------------------------------------------------------------------
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--------------AGTACTAGCATTGCCTTCAAAAAGAAGGACTAAAAATAGCGACCCGAGTAGTATAGCAGGAATATG
AACAAACACCTCACGTTTAGCCTTGCAATGGCAACCGATGGTTT---AGATCACGACTGATGAAGACTCCAGAGAAAGCT
ACCGGTC-AAAAACACCGCGTACACAAAGTCTCGTACTCCCTCCTTCCATCTATATATAGAGACTAATGCATTTTTTGAG
ACTAACTTTGATAAAATGTTAGAGAATAATATATGACACGTAAGTTACACAAAGCATACCGTTAAAAGAGCTTTCACTGA
TATAATCTTATCAATAGTCAAAGACGGTCTAGAAAAACACATTAGGCCCTATATAG
>chr1A_197
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------------------------------------TACAATTTTTTTTACTGCCTGGTTACCACAATAAATGGATCTGC
TGGCCTCTTCACTATTTACGCATGGCCTTGATTTGCCCACGGATTTCAAAGAGGACACGATCCCCTTTTCCTTTTTGCGG
GCAGAAGAGGACAGGGTCTCATGGGTTCGTTGGATGGCCAGCAGCTACT-------------------------------
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---------------------------------------------------ATGTATACTCATGTGCAAAAACGCAAGCG
AAGCAAATACTCCGCGCCCATACCTCGGCCAAATTCAAGCCATTTCTGGCTCCA---------TTCACTCGCAAACAACG
AAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGACACACTGGCATCTTAAAAAAAATGCAG------------
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---------------------------------------------TACTAGTACACCGGCAGCAACGATGGCAGACGCCG
TAAATATGCTCAACCAGGCCCCCCATTAAAGTCACTCCGCGAAACAAACCTTATCCACACCACTCCCCCGTCCCTCTCCC
GCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCATCGCGGTTCACATACACTT
TTACACACGGCAGCACACGGAACACGCACACACGTTGCTTGTGCGCCTCCTCCGCCGGATCACGAGCCAACCGCACCGAG
GTCGGCGGGGTAAGAGCGCGCGACGATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCCGCGCACCGGCTCTTCGCGC
CGGCGCCCGCGCGCACCCTGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGCGCG
GCGCTGGCGTCTTCCCCGCCGGCCGACGCGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCCGCG
CGCCGCGGCGCCGCGGGATGCCGCCGGTGGCGGTGGCGGCGTCGGGGGCCCGGCGTCGCTGCCCGTCAACATCCCCGACT
GGTCCAAGATCCTGGGGGCGGAGTACGGCGGGGGCAGCGCCGGCGCGGGGCGGTGGCCGTCGGACGATCGCGGGGACGCG
TACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTTCTC
GGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCGGCT
TCCAGGACTGATCCTGATCCGGCCCACCCACGGCGATCGATCGTCCGTCCCCTTACGATTAATTTGATGAGTTTTTTTCT
TTTCTTCTACGAGTAGTTTGTGATCGGTGATGAGAATGAGATGAGATGCAGGGAGAGTAGTAGAGATTGGTTAAGCCTCT
GGTTTTGGCAGTTTTCCCCGGAGAGGCTGGCTGGCTCGATGTACTACCGCTT------------AATCGATTGCTCCTTA
ACAAAGATGATGAGTACGAGTTGTACCAGCACTGTCCATGTGCTGCCCACTGATTTCTTGCTGGTTAACCACTGATCTAT
AATGATCTGCCATCACCAGCA---GTAGTACTAGTACTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGGTGCA
GATAGGCGTAGTAGTACTACTGTTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTATTGGC
AGAGCAGATTTTCGATTTAAAAAGGGAGCCTAGTCTATCGGGGGAGTTGGGGGCAGATTTGGACGTGCGGAGAATAAAAT
TTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGAGATGGAGA
AAGTGGGAGGGGCCCTGATTGGACGATGGGGGAGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCCCGCATACTTA
ACTGCAA-------------------------------------------------------------------------
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--------------AGTACTAGCATTGCCTCCAAAAAGAAGGAATAAAAATAGCGACCCGAGTAGCAGAGCAGGAATATG
AACAAACACCTCACGTTTAGTCTTGCAAGGGCAACCAATGGTTTGGTAGATCACAGCTGATGAAGACGTCAGAGAAAGCT
ACCGGTC-AAAAACACCGCGTACACAAGGTCTCGTA--------------------------------------------
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>chr1D_247
CTTAC---------------------------------------------------------------------------
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------------TCTTTACGCATGACAGTGATTTGCCTACGGATTTCAAAGAGGACACGATCCCCATTTTCTTTTTGCGG
GCAGAAGAGGACACGGTCTCATGGGTTCGTTGGATGGCCAGCAGCTACT-------------------------------
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---------------------------------------------------ATGTATACTCCTGTGCAAAACCGCAAGCG
AAGCAAATACACCGCGCCCATACCTCGGCCAAATTCAAGCCATTTCTGGCTCCATCGTCTCCATTCACTCGCAAACAACG
AAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGACACACTGGCATCTTAAAAAAAAGTAAATACACGAAGAGT
CATAGAACTTGCACGTGACGTTCAGTTTGGTGCATAAAGTCGTAAAATACATGTTTCTGGTCATCTAACTTGTCTTCTCG
TTCATATACGGTGCTTTCTATCGTATCCGGCCGTATCCCACGCACACCTGGCGTGCCAACGTTGTGGGGTTCCATTTTCA
CTGTTTTTCAACCCTTGCATTTTATTTATTTATGCAGAAAATTCTCAAATAAAATTAAAACCAAACTTTTCTGAACCCTT
GCATTTTACCTACACGGACAATTCTCAAATGAAATTGAAAACGCGGCTACATGCTGGGCTTCGAACTACTCGACTAACAT
GATGTTTGGCGATTAGTACGCACAGTTAGCTCCATATTATATGGATAGTACGAAGAAGTAGAAATTAAAACAGGAAAAGC
TGTGCAAAAAAGGGATGGCCCCGGTTCAAACCTATGACCTCCTGGCTAGCTCGCCGCATGTGCAGTTAAAGAGATATACA
CGATTTCTCTTTTGTATCCTTTCTTTTTTCTATCTAAGAAAATAACTTATATTCTAGATAAACTTTTCGGACAAATCATT
AAACTTTTCCGCGCAAAGAAAATCATTAAACTTTTGTTTGAATTCGCACAAAATAAAATTTGAAAAATCTAGATAGAAGA
AATATAGGGCAGAATGAATGTAAATAATTTTTAGACAAAGAAACTACATTTTTTAAATTCGAATAATTTTAACTTAAACA
ATCTAGTGCAGAATGAATGAGCGCATTATTTTGGACAAATAGACGGAAATTGTGTTTGAATTCAAATAATTTTAAGTTTT
TAAATCTAGATAAAGGAAAATATAGGTCAGAATGCTTGTACATAAATTTTTCAGACAAATGAACTATTTCTTCTGAATTC
GAATAATTAAAAATTTAAAAATCTAGATAAAAGAAAATATATTGCAGAATAAATGTACATATATTTCTTTAAGGCAAATT
AGGGTTTTTTTTCGAATTTGAATAATTTTAAAGTTGAAAATCTAGATAAATGAAATATAGTTCAGCTGATTTGTCCAAAA
GAATTTTAAAATTTGAACAATTTTATATTTGAAAAAAACGATCGCTCAAACAGAATGATTCCACTCTCCCCGTGATAATG
TGCATAAATTTCTATTACCCGCGTAGTTTTCTTAAATAGGACAAGATTAATAACAACATACACACGAACATTTCCCCGCA
TGAATATTTTTTTGAAATGCATGAACATTTTTAAAATGCAACTTACTTTTTTAATTACACAAATATTTTTTACAATTTTT
AATTTTTTAAAATATCACATACTTTTTTTACAACATAGAACATTTTTGAAACGTCACAAACAACAAAAATATATGTTGTT
TTCTTACATCATTTTATTCCTCCGGGGAATTACACGAACATGTTTTTAGTTTTGGTTTATTCCTTTGTTGGGCTGAGCGA
ACATTGTATAAAAGAAAATTTTGTTTGTGAGTTTGATGTCAATTTATTCTCGGTCGAGTGGCTAGTGCAGTTATCTCTTA
GTTTGCTGGACATCCGTTCTAGTCCCCTGGCGCTATTTTATTTGTCTTTCTTGAAAGATACTGTGTGCCTACACGTGCGT
AATTAAATAAAAATTGAGGATGTTTTTTGCAAAAGAAAGATAATGCATGGCTCACCCAACACCTCACCACTCACCGCCAC
CGACATGTGGGCCGTATTCATGCTGACACGACACATGAGCACAAGATACGGCTAGATACGAAAGAAGTGGCCGTATCTGC
ACGCATAGGCAAGTTATGTGACCGCAATGACGTACGACGTATTTTACAACTTTTAGCACCAAACCGAACATCATATGCAA
GTTATATGACTGTTATTGATATTACCTCTTAAAAAAATGCAGTATTACTAGTACACCGACAGCAACGATGGCAGACGCCG
TAAATATGCTCAACCAGGCCCCCCATTAAAGTCACTCCGTGAAACAAACCTTATCCACACCACT--CCCGTCCCCCTCCC
GCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCTACGCGGTTCACATACACTT
TTACACACGGCAGCACACGGAACACGCACACACATTGCTTGTGCACCTCCTCCGCCGGATCACGAGCCAACCGCACCTCA
GCCGGCGGGGTAAGAGCGCGAGACGATGGCTGGCCGGAGCAGCAGCCGTTCCATGGTGTCCGCGCACCGGCTCTTCGCGC
CGGCGCCGGCGCGCACCCTGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGCGCA
GCGCTGGCGTCGTCCCCGCCGGCCGACGCGTACGGGCGGGCCCTGTCCACGTCCACTCCCTCCAGGGCCTCCAAGCCACG
CGCCGCGGCGCCACGAGATGCCGCCGGTGGCGGTGGAGGCGTCGGGGGCCCGGCGTCGCTGCCTGTCAACATCCCCGACT
GGTCCAAGATCCTGGGGTCAGAGTACGGCGGGGGCAGCGCCGGCGCGGGGCGGTGGCCGTCGGACGATCGCGGGGACGCG
TACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTTCTC
CGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCGGCT
TCCAGGACTGATCCTGATCCGGCCCGCCTACGGCGATCCATCGTCCGTGCCCTTACGATTAATTTGATGAGTTTTT--CT
TTTCTTCTACGAGTAGTTTGTGATCGGTGACGAGAATGAGATGCAGCGGATG----GTAGTAGAGATTGGTTAAGCCTCT
GGTTTTGGCAGTTTTCCCCGGAGAGGCCGGCTGGCTCGATGTACTACCACTAAAACAACCAGCGAATCGATTGCTCCTTA
ACAAAGATGATGAGTACGAGTTGTACCAGCAATGTCCATGTGCCGTCCACTGATTTCTTGCTGGTTAACCACTGATCTAT
AATGATCTGCCATCACCAGCACTAGTACTAGTACTAGTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGGTGCA
GATAGGCGTAGTAG---TACTGTTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTATTGGC
AGAGCGGAC--TCGATTTAAAAAGGGAGCCTAGTCTATCGGGGGAGTTGGGGGCAGATTTGGACGTGCCGAGAATAAAAT
TTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGAGA----------------------------GATGGAGA
AAGTGGGAGGGGCCCTGATTGGACGATGGGGGCGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCTCGCATACTTA
ACTGCAAAGTACTCCCTCCTTTCCGGTTTATAGGGCTTATCTTAAAATCCTAGTTTTTTTTATTTTATAAGACTTAATTT
GGTTGTTCTTCTTCACAAGTTCAGATTTCAAGGTGCACTAAGTAATTGCATGCAAGTATTAAAAAGAAAATTGATCAATG
CATGTACTTTATGCATGCATGCATTGCAATTAATACATTGGTAAACATAATTTTTTAAGAAAAACAAAAGCATTAATTAA
ATGCTTTTGCAAATTACAAAAAGTATTCCACCACTCATCATCTACCTTGATTGGTGAGATTTTTGAATTGAGCCCTATAA
ACCGAAAAGGAGGGAGTACTAGCATTGCCTCCAAAAAGAAGGACTAAAAATAGCGACCCGAGTAGTATAGCAGGAATATG
AACAAACACCTCACGTTTAGCCTTGCAAGGGCAACCGATGGTTT---AGATCACGACTGATGAAGACTCCAAAGAAAGCT
ACCGGTAAAAAAACACCGCGTACACAAGTCTCGTA---------------------------------------------
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>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S------SS------S----------------
------------------------------------------------------------S-------------------
-------------S-------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
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----------------------------------------S---------------------------------------
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------------------------------------------------SSS-----------------------------
-----------------S--------------S--------------------------S--------------------
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-------------------S-------S----------------------------------------------------
------S----------S------------------------------------------S-------------------
-----------------S--------------------------------------------------------------
-------------------S-------S----------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------S-----------------------------------
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---------------S----S-S--SS--S------------------------------------------------S-
S-S--------------------------------------------------------S--------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------SSSS-----------------------------------------------------
---------S----------------------------------------------------------------------
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------------------------------------------------S-------------------------------
------------------------------S-------------------------------------------------
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------------------------------S-------------------------------------------------
----------------------------S---------------------------------------------------
---------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_149
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-------------------------------------------------TTCTTCACCAATCCGCGGAA-----------
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>reverse_3470
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-----------------------------TCGCCGTCCCCTTACGATTA-------------------------------
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