Multiple sequence alignment - TraesCS1B01G172800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G172800 chr1B 100.000 3320 0 0 1 3320 308383856 308380537 0.000000e+00 6131.0
1 TraesCS1B01G172800 chr1D 96.770 2074 41 7 798 2853 215066217 215064152 0.000000e+00 3435.0
2 TraesCS1B01G172800 chr1D 88.815 751 66 9 2 743 215067173 215066432 0.000000e+00 905.0
3 TraesCS1B01G172800 chr1D 94.431 413 20 2 2911 3320 215064046 215063634 1.680000e-177 632.0
4 TraesCS1B01G172800 chr1A 96.665 2069 38 11 799 2853 274110085 274108034 0.000000e+00 3410.0
5 TraesCS1B01G172800 chr1A 93.704 270 15 1 3053 3320 274107834 274107565 1.430000e-108 403.0
6 TraesCS1B01G172800 chr1A 98.246 114 2 0 2892 3005 274107948 274107835 2.020000e-47 200.0
7 TraesCS1B01G172800 chr1A 92.157 51 3 1 53 102 274110120 274110070 1.650000e-08 71.3
8 TraesCS1B01G172800 chr7D 87.051 641 76 5 118 752 80797950 80797311 0.000000e+00 717.0
9 TraesCS1B01G172800 chr7D 85.325 661 84 11 104 757 290865649 290864995 0.000000e+00 671.0
10 TraesCS1B01G172800 chrUn 86.293 642 80 6 121 757 223002366 223001728 0.000000e+00 691.0
11 TraesCS1B01G172800 chr3D 86.470 643 69 13 120 753 571044496 571043863 0.000000e+00 689.0
12 TraesCS1B01G172800 chr3D 86.137 642 81 6 121 757 29494019 29493381 0.000000e+00 686.0
13 TraesCS1B01G172800 chr3D 85.981 642 82 6 121 757 29528948 29528310 0.000000e+00 680.0
14 TraesCS1B01G172800 chr3D 85.826 642 83 6 121 757 29565888 29565250 0.000000e+00 675.0
15 TraesCS1B01G172800 chr3D 84.917 663 89 9 118 773 354087475 354088133 0.000000e+00 660.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G172800 chr1B 308380537 308383856 3319 True 6131.000000 6131 100.000000 1 3320 1 chr1B.!!$R1 3319
1 TraesCS1B01G172800 chr1D 215063634 215067173 3539 True 1657.333333 3435 93.338667 2 3320 3 chr1D.!!$R1 3318
2 TraesCS1B01G172800 chr1A 274107565 274110120 2555 True 1021.075000 3410 95.193000 53 3320 4 chr1A.!!$R1 3267
3 TraesCS1B01G172800 chr7D 80797311 80797950 639 True 717.000000 717 87.051000 118 752 1 chr7D.!!$R1 634
4 TraesCS1B01G172800 chr7D 290864995 290865649 654 True 671.000000 671 85.325000 104 757 1 chr7D.!!$R2 653
5 TraesCS1B01G172800 chrUn 223001728 223002366 638 True 691.000000 691 86.293000 121 757 1 chrUn.!!$R1 636
6 TraesCS1B01G172800 chr3D 571043863 571044496 633 True 689.000000 689 86.470000 120 753 1 chr3D.!!$R4 633
7 TraesCS1B01G172800 chr3D 29493381 29494019 638 True 686.000000 686 86.137000 121 757 1 chr3D.!!$R1 636
8 TraesCS1B01G172800 chr3D 29528310 29528948 638 True 680.000000 680 85.981000 121 757 1 chr3D.!!$R2 636
9 TraesCS1B01G172800 chr3D 29565250 29565888 638 True 675.000000 675 85.826000 121 757 1 chr3D.!!$R3 636
10 TraesCS1B01G172800 chr3D 354087475 354088133 658 False 660.000000 660 84.917000 118 773 1 chr3D.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 269 1.756538 TGCGGTATCAATCTCTGCTCA 59.243 47.619 0.0 0.0 34.91 4.26 F
1830 2011 0.473755 TCTGCCTCTGGTTCTTTGCA 59.526 50.000 0.0 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2122 0.729116 ACGCAATGAAGAAGCCATCG 59.271 50.0 0.0 0.0 0.0 3.84 R
2989 3228 0.103208 CGGAGGATGCTGGTAGACAC 59.897 60.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.006759 GAAAAGAACCAAGAGTGAATCAGG 57.993 41.667 0.00 0.00 0.00 3.86
33 34 4.421131 AGAGTGAATCAGGAGTAACCACT 58.579 43.478 0.00 0.00 42.04 4.00
34 35 4.221703 AGAGTGAATCAGGAGTAACCACTG 59.778 45.833 0.00 0.00 42.04 3.66
42 43 5.815581 TCAGGAGTAACCACTGCAATAATT 58.184 37.500 0.00 0.00 45.06 1.40
95 96 2.695359 ACGCGTGAGTAACATGGAAAT 58.305 42.857 12.93 0.00 36.16 2.17
164 165 5.671493 ACTCATAGCAATTACAGGTACACC 58.329 41.667 0.00 0.00 0.00 4.16
267 269 1.756538 TGCGGTATCAATCTCTGCTCA 59.243 47.619 0.00 0.00 34.91 4.26
282 284 5.660417 TCTCTGCTCAAAGAGATACTCCAAT 59.340 40.000 0.00 0.00 46.13 3.16
456 463 2.550277 TGATCCCCTAGAAGTGCAGA 57.450 50.000 0.00 0.00 0.00 4.26
524 534 5.973565 CCTTCACAAAGAATCAGACAAACAC 59.026 40.000 0.00 0.00 35.25 3.32
568 578 9.655769 CAACATAAACTCATCAAATCCGAATAG 57.344 33.333 0.00 0.00 0.00 1.73
570 581 7.498900 ACATAAACTCATCAAATCCGAATAGCA 59.501 33.333 0.00 0.00 0.00 3.49
572 583 4.384056 ACTCATCAAATCCGAATAGCAGG 58.616 43.478 0.00 0.00 0.00 4.85
605 617 5.669164 GAGAAACTCTCTAACCTCATGGT 57.331 43.478 0.00 0.00 43.47 3.55
637 649 9.899226 CAAAAGGACGAGAGAAAAATTATTCTT 57.101 29.630 0.00 0.00 39.70 2.52
661 674 8.565896 TTGCAAAACTATGACAATCACTAGAT 57.434 30.769 0.00 0.00 35.53 1.98
724 738 4.383118 CCCACCTCTTAACGTCAAGATGAT 60.383 45.833 10.35 0.00 34.14 2.45
771 813 2.120232 CTTAGACTATGACAAGCGGCG 58.880 52.381 0.51 0.51 0.00 6.46
773 815 1.883084 GACTATGACAAGCGGCGGG 60.883 63.158 9.78 0.00 0.00 6.13
780 822 1.912371 GACAAGCGGCGGGAGAAAAG 61.912 60.000 9.78 0.00 0.00 2.27
796 838 6.406512 GGGAGAAAAGCCTACTTCTCTTCTAG 60.407 46.154 13.33 0.00 44.62 2.43
809 983 8.602472 ACTTCTCTTCTAGTACATGGAAAGAT 57.398 34.615 0.00 0.00 0.00 2.40
1329 1510 1.149627 CTCGTCCTCCCTCTCCGAT 59.850 63.158 0.00 0.00 0.00 4.18
1830 2011 0.473755 TCTGCCTCTGGTTCTTTGCA 59.526 50.000 0.00 0.00 0.00 4.08
1872 2053 1.876156 CTGTTCAGGCTCTTTGTGGTC 59.124 52.381 0.00 0.00 0.00 4.02
1917 2098 2.432972 GCAAACCCATGGCTTGCG 60.433 61.111 25.29 8.40 0.00 4.85
1941 2122 0.750911 CCATTTCTGGCCCAGAGCTC 60.751 60.000 14.22 5.27 41.75 4.09
2325 2506 4.275196 GCAGCTGCTCTCAATTGATTCATA 59.725 41.667 31.33 0.00 38.21 2.15
2326 2507 5.048643 GCAGCTGCTCTCAATTGATTCATAT 60.049 40.000 31.33 0.00 38.21 1.78
2327 2508 6.374578 CAGCTGCTCTCAATTGATTCATATG 58.625 40.000 8.96 0.00 0.00 1.78
2328 2509 5.473846 AGCTGCTCTCAATTGATTCATATGG 59.526 40.000 8.96 0.00 0.00 2.74
2331 2512 6.358991 TGCTCTCAATTGATTCATATGGTGA 58.641 36.000 8.96 0.00 34.25 4.02
2332 2513 6.485648 TGCTCTCAATTGATTCATATGGTGAG 59.514 38.462 8.96 8.84 38.29 3.51
2333 2514 6.485984 GCTCTCAATTGATTCATATGGTGAGT 59.514 38.462 8.96 0.00 38.29 3.41
2334 2515 7.013083 GCTCTCAATTGATTCATATGGTGAGTT 59.987 37.037 8.96 0.00 38.29 3.01
2336 2517 8.048514 TCTCAATTGATTCATATGGTGAGTTGA 58.951 33.333 8.96 4.93 38.29 3.18
2337 2518 7.988737 TCAATTGATTCATATGGTGAGTTGAC 58.011 34.615 3.38 0.00 38.29 3.18
2338 2519 7.611079 TCAATTGATTCATATGGTGAGTTGACA 59.389 33.333 3.38 0.00 38.29 3.58
2339 2520 8.410912 CAATTGATTCATATGGTGAGTTGACAT 58.589 33.333 0.00 0.00 38.29 3.06
2340 2521 6.930667 TGATTCATATGGTGAGTTGACATG 57.069 37.500 2.13 0.00 38.29 3.21
2341 2522 5.824097 TGATTCATATGGTGAGTTGACATGG 59.176 40.000 2.13 0.00 38.29 3.66
2342 2523 4.155063 TCATATGGTGAGTTGACATGGG 57.845 45.455 2.13 0.00 31.80 4.00
2343 2524 2.418368 TATGGTGAGTTGACATGGGC 57.582 50.000 0.00 0.00 0.00 5.36
2616 2797 3.964031 TGGCATACAAGAAGGGTTGTTTT 59.036 39.130 0.00 0.00 41.06 2.43
2642 2830 4.092116 CCTTTCCATGGGAGGTAAGATC 57.908 50.000 20.85 0.00 38.04 2.75
2668 2856 6.206634 CCTTGTGATAGGTTTTGTAGCTTCAA 59.793 38.462 1.07 1.07 35.80 2.69
2674 2862 8.049117 TGATAGGTTTTGTAGCTTCAAGATGAT 58.951 33.333 5.88 0.00 35.80 2.45
2677 2865 6.373774 AGGTTTTGTAGCTTCAAGATGATGAG 59.626 38.462 5.88 0.00 0.00 2.90
2704 2893 5.286221 ACTTTATACAGTCCTATGGTGGGT 58.714 41.667 0.00 0.00 0.00 4.51
2721 2910 5.007682 GGTGGGTTAGCAGAATTTACTGAA 58.992 41.667 0.00 0.00 39.94 3.02
2740 2930 2.777832 AGGAGCTGAAACCTGTGATC 57.222 50.000 0.00 0.00 34.99 2.92
2777 2967 9.277783 GCATAGTGGTTATTCTCTGTTGATATT 57.722 33.333 0.00 0.00 0.00 1.28
2803 2993 7.818930 TCATCATTTTGAACCTTTTCCATTAGC 59.181 33.333 0.00 0.00 0.00 3.09
2868 3078 5.287226 CCAGCTTGGCTCATTATTGAAATC 58.713 41.667 0.00 0.00 36.40 2.17
2882 3092 9.674824 CATTATTGAAATCCTTATGTCTTGCTC 57.325 33.333 0.00 0.00 0.00 4.26
2883 3093 8.806429 TTATTGAAATCCTTATGTCTTGCTCA 57.194 30.769 0.00 0.00 0.00 4.26
2886 3096 8.806429 TTGAAATCCTTATGTCTTGCTCATTA 57.194 30.769 0.00 0.00 0.00 1.90
2890 3128 8.985315 AATCCTTATGTCTTGCTCATTATTGA 57.015 30.769 0.00 0.00 0.00 2.57
2904 3142 8.733458 TGCTCATTATTGATAGGCATTTATCAC 58.267 33.333 4.80 0.00 39.19 3.06
2989 3228 6.039829 GGCTCTATTTATTGGAAAAGACCCAG 59.960 42.308 0.00 0.00 34.77 4.45
3019 3258 1.407437 GCATCCTCCGTGTTTCTGGAT 60.407 52.381 0.00 0.00 37.96 3.41
3022 3261 1.974957 TCCTCCGTGTTTCTGGATTGA 59.025 47.619 0.00 0.00 32.83 2.57
3070 3309 3.063588 CACTGCATGTCAACTGCTCTATG 59.936 47.826 0.00 0.00 40.34 2.23
3094 3333 7.941919 TGTCTCTATGCAGTCGAATATTAAGT 58.058 34.615 0.00 0.00 0.00 2.24
3167 3407 7.621428 ACAGTTCATTGATTGGTCATAAGAG 57.379 36.000 0.00 0.00 33.56 2.85
3168 3408 7.397221 ACAGTTCATTGATTGGTCATAAGAGA 58.603 34.615 0.00 0.00 33.56 3.10
3170 3410 7.012138 CAGTTCATTGATTGGTCATAAGAGAGG 59.988 40.741 0.00 0.00 33.56 3.69
3171 3411 5.371526 TCATTGATTGGTCATAAGAGAGGC 58.628 41.667 0.00 0.00 33.56 4.70
3252 3494 8.370493 TGTTCAGAAGATAAAGTTGACTTGAG 57.630 34.615 0.00 0.00 36.12 3.02
3261 3503 8.348507 AGATAAAGTTGACTTGAGCAGAAAAAG 58.651 33.333 0.00 0.00 36.12 2.27
3272 3514 8.778358 ACTTGAGCAGAAAAAGTAATTGTAGAG 58.222 33.333 0.00 0.00 32.48 2.43
3278 3520 7.862873 GCAGAAAAAGTAATTGTAGAGCAAACT 59.137 33.333 0.00 0.00 40.91 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.765182 TCCTGATTCACTCTTGGTTCTTTTC 59.235 40.000 0.00 0.00 0.00 2.29
10 11 4.841246 AGTGGTTACTCCTGATTCACTCTT 59.159 41.667 0.00 0.00 37.07 2.85
19 20 4.901197 TTATTGCAGTGGTTACTCCTGA 57.099 40.909 6.12 0.00 34.07 3.86
23 24 7.975866 CAATCAATTATTGCAGTGGTTACTC 57.024 36.000 0.00 0.00 38.69 2.59
33 34 9.666668 GCCTGTTGGGTACAATCAATTATTGCA 62.667 40.741 0.00 0.00 42.02 4.08
34 35 7.394280 GCCTGTTGGGTACAATCAATTATTGC 61.394 42.308 0.00 0.00 42.02 3.56
42 43 2.445427 CATGCCTGTTGGGTACAATCA 58.555 47.619 0.00 0.00 39.13 2.57
230 231 5.074584 ACCGCAAAGAAGGTGTTTTTAAA 57.925 34.783 0.00 0.00 39.66 1.52
233 234 4.339814 TGATACCGCAAAGAAGGTGTTTTT 59.660 37.500 0.00 0.00 41.51 1.94
282 284 3.857157 ACAGCCTCTTTACCAAAGTCA 57.143 42.857 0.00 0.00 39.52 3.41
368 371 0.668535 GGGCGACTCAAAGCACTTTT 59.331 50.000 0.00 0.00 33.25 2.27
373 376 0.901827 TAGATGGGCGACTCAAAGCA 59.098 50.000 0.00 0.00 34.54 3.91
456 463 6.267699 TGGTGAAGATATAGTGATTCGATGGT 59.732 38.462 0.00 0.00 0.00 3.55
535 545 6.389830 TTGATGAGTTTATGTTGCTGTGTT 57.610 33.333 0.00 0.00 0.00 3.32
570 581 2.301583 GAGTTTCTCTCCTTGCAGACCT 59.698 50.000 0.00 0.00 37.22 3.85
572 583 3.676291 AGAGTTTCTCTCCTTGCAGAC 57.324 47.619 0.00 0.00 43.71 3.51
605 617 5.477607 TTTCTCTCGTCCTTTTGATGGTA 57.522 39.130 0.00 0.00 0.00 3.25
637 649 7.607607 ACATCTAGTGATTGTCATAGTTTTGCA 59.392 33.333 0.00 0.00 0.00 4.08
650 663 9.850628 ATGTTTTTCATCAACATCTAGTGATTG 57.149 29.630 0.00 0.00 40.17 2.67
710 724 4.038042 CCTCCAGCTATCATCTTGACGTTA 59.962 45.833 0.00 0.00 0.00 3.18
724 738 3.751018 TCCCCTCGCCTCCAGCTA 61.751 66.667 0.00 0.00 40.39 3.32
753 795 0.384309 CCGCCGCTTGTCATAGTCTA 59.616 55.000 0.00 0.00 0.00 2.59
760 802 2.668185 TTTTCTCCCGCCGCTTGTCA 62.668 55.000 0.00 0.00 0.00 3.58
761 803 1.912371 CTTTTCTCCCGCCGCTTGTC 61.912 60.000 0.00 0.00 0.00 3.18
771 813 4.224147 AGAAGAGAAGTAGGCTTTTCTCCC 59.776 45.833 25.42 20.21 46.65 4.30
773 815 7.165460 ACTAGAAGAGAAGTAGGCTTTTCTC 57.835 40.000 23.35 23.35 42.94 2.87
780 822 5.828859 TCCATGTACTAGAAGAGAAGTAGGC 59.171 44.000 0.00 0.00 0.00 3.93
796 838 7.963532 TGGGTTAGAGATATCTTTCCATGTAC 58.036 38.462 6.70 0.00 0.00 2.90
809 983 7.235079 TGTGATTTTGGTTTGGGTTAGAGATA 58.765 34.615 0.00 0.00 0.00 1.98
1221 1402 1.452289 CGAGAGGCGGAGAAGGAGA 60.452 63.158 0.00 0.00 36.03 3.71
1785 1966 1.671054 CACAACCGCATCCCGAGTT 60.671 57.895 0.00 0.00 40.02 3.01
1830 2011 2.046892 GCCTGGTCATGCACGTCT 60.047 61.111 0.00 0.00 0.00 4.18
1839 2020 4.254709 AACAGCTGCGCCTGGTCA 62.255 61.111 15.27 0.00 37.16 4.02
1941 2122 0.729116 ACGCAATGAAGAAGCCATCG 59.271 50.000 0.00 0.00 0.00 3.84
2325 2506 0.405198 TGCCCATGTCAACTCACCAT 59.595 50.000 0.00 0.00 0.00 3.55
2326 2507 0.537143 GTGCCCATGTCAACTCACCA 60.537 55.000 0.00 0.00 0.00 4.17
2327 2508 0.537143 TGTGCCCATGTCAACTCACC 60.537 55.000 0.00 0.00 0.00 4.02
2328 2509 1.200716 CATGTGCCCATGTCAACTCAC 59.799 52.381 0.37 0.00 42.92 3.51
2331 2512 1.252904 GCCATGTGCCCATGTCAACT 61.253 55.000 8.41 0.00 45.83 3.16
2332 2513 1.216178 GCCATGTGCCCATGTCAAC 59.784 57.895 8.41 0.00 45.83 3.18
2333 2514 3.697424 GCCATGTGCCCATGTCAA 58.303 55.556 8.41 0.00 45.83 3.18
2342 2523 1.246056 ACTGTGATGTGGCCATGTGC 61.246 55.000 9.72 0.00 40.16 4.57
2343 2524 0.806868 GACTGTGATGTGGCCATGTG 59.193 55.000 9.72 0.00 0.00 3.21
2642 2830 4.589908 AGCTACAAAACCTATCACAAGGG 58.410 43.478 0.00 0.00 41.32 3.95
2668 2856 7.667575 ACTGTATAAAGTCCACTCATCATCT 57.332 36.000 0.00 0.00 0.00 2.90
2704 2893 5.877012 CAGCTCCTTCAGTAAATTCTGCTAA 59.123 40.000 0.00 0.00 35.63 3.09
2721 2910 2.264455 AGATCACAGGTTTCAGCTCCT 58.736 47.619 0.00 0.00 33.96 3.69
2740 2930 6.920569 ATAACCACTATGCGAACCTAAAAG 57.079 37.500 0.00 0.00 0.00 2.27
2777 2967 7.818930 GCTAATGGAAAAGGTTCAAAATGATGA 59.181 33.333 0.00 0.00 35.25 2.92
2829 3020 1.343069 CTGGGGTACTGATAGGGAGC 58.657 60.000 0.00 0.00 0.00 4.70
2868 3078 8.944029 CCTATCAATAATGAGCAAGACATAAGG 58.056 37.037 0.00 0.00 39.39 2.69
2882 3092 7.755591 AGCGTGATAAATGCCTATCAATAATG 58.244 34.615 2.76 0.00 42.23 1.90
2883 3093 7.928307 AGCGTGATAAATGCCTATCAATAAT 57.072 32.000 2.76 0.00 42.23 1.28
2886 3096 5.764686 TCAAGCGTGATAAATGCCTATCAAT 59.235 36.000 0.00 0.00 42.23 2.57
2890 3128 5.764686 TGAATCAAGCGTGATAAATGCCTAT 59.235 36.000 15.69 0.00 44.02 2.57
2904 3142 3.189080 TGGAGATGTGTTTGAATCAAGCG 59.811 43.478 5.41 0.00 0.00 4.68
2989 3228 0.103208 CGGAGGATGCTGGTAGACAC 59.897 60.000 0.00 0.00 0.00 3.67
3019 3258 7.981142 AGGGTTACTAATAAGAAACTGGTCAA 58.019 34.615 0.00 0.00 0.00 3.18
3022 3261 7.092712 GGGTAGGGTTACTAATAAGAAACTGGT 60.093 40.741 0.00 0.00 32.37 4.00
3070 3309 8.804688 AACTTAATATTCGACTGCATAGAGAC 57.195 34.615 0.00 0.00 0.00 3.36
3092 3331 7.770897 CCACTAGCATCCTTAACATTTCTAACT 59.229 37.037 0.00 0.00 0.00 2.24
3094 3333 7.857456 TCCACTAGCATCCTTAACATTTCTAA 58.143 34.615 0.00 0.00 0.00 2.10
3167 3407 1.216710 CCAACCGAGAGACTGCCTC 59.783 63.158 0.00 0.00 42.28 4.70
3168 3408 2.948720 GCCAACCGAGAGACTGCCT 61.949 63.158 0.00 0.00 0.00 4.75
3170 3410 1.294659 CTTGCCAACCGAGAGACTGC 61.295 60.000 0.00 0.00 0.00 4.40
3171 3411 0.318441 TCTTGCCAACCGAGAGACTG 59.682 55.000 0.00 0.00 30.30 3.51
3180 3422 2.223947 ACGAAATGGTTTCTTGCCAACC 60.224 45.455 0.00 0.00 43.68 3.77
3250 3492 7.133891 TGCTCTACAATTACTTTTTCTGCTC 57.866 36.000 0.00 0.00 0.00 4.26
3252 3494 7.862873 AGTTTGCTCTACAATTACTTTTTCTGC 59.137 33.333 0.00 0.00 38.31 4.26
3272 3514 4.378459 GCAGCCCGATACATAATAGTTTGC 60.378 45.833 0.00 0.00 0.00 3.68
3278 3520 4.405680 AGCATAGCAGCCCGATACATAATA 59.594 41.667 0.00 0.00 34.23 0.98
3289 3531 0.536006 CCCTAACAGCATAGCAGCCC 60.536 60.000 0.00 0.00 34.23 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.