>input_sequence_54573
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------------------------------------------------------------ATGCCGGCAGCCGCCGTGCC
CGCGCCCGCGCCACCGGCGCCGAGCCTGGACGCGCGTACGGGCGGCCGCGTCCTGCGCCGAGCGGCGGCGCTCCTCCTCC
ACCCGGCCTCGCTCCCGCCGCTCCTCCTCGCGGCGCTCCTCCTCCTCCTCTTCCGGTCAGCCCTCTTTGCTGGCACGCTT
CGCCTCTCCTCCTTCGCGGACCGCGATCCCGCCCTCCGCTCTCTCCTTCTCCGCCTCTCGCCTCCCGCCCAGCCCTCCCC
GCCGGCTCCGCAGCACCACCTCCCCCGCCGCCGGTCCCCCTTCACTTCCTCCTCGTCCTCCCTCTCCGATGACGACTTCC
TCGTCGGACCCTTCGACCCGGTCTCGTCCGCCCCCTCCAGCCGACGCAACGCCTCCTACCACAACATCTTCTTCACCTCC
TTCTCCACCCCCAAACCCTACCCCGTACCCCTCTCCCAGCTGCTCCCCTCATCCGTTTCCCCCTTCCTCCTTGCCATCCA
CAACGAGACCTCCTCGCCGAAGCCTGCCTCGCCCCGGGGCGGTGAGCTCAGGCTGCTCGACCTGACCAGGCGCGACGCTG
CGGCGATCATCAACCTCCTCGCTCTGCTCTCGTCTGCTCATGTGCTCGCGATCCTTGGGTACATCACTGTGCACTCCATA
GCTCTCGGCACGGTGTTCGCTTCTGTAGCGGGGCGCCACCTGCCTGAACGGCGGCGAGGGTTCTTCCTTTCCGGTGCGGC
AATGGGCGCTAGGAGGCTCACTGGGTTTGCATTCCTGCGGTGGGCAACTCGGGATGCGGTTGTGCAGATGCTCTGCCTCT
GGTTCTTTGCAGACGTGCATGACCAGGCGCAGCTGTTCAGGCTCTTTGTGGTCGCCAAGCTCATGCCGTTTTCGGCATCT
GCAAACCCATGGCTTGCGGCAGCCATTTCTGGCCCAGAGCTCGATGGCTTCTTCATTGCGTGGGCTCTTCTTGATGCTGT
TGTATCGGTGTTGTTCACGGTGGTGCCATGGGTGGTTGCAATGGATCGTGATCCGCGTCCACCTGGCCGCAATGCTGTGA
AGGAAGGCTGCTATCTTGTGTCATTGATGGCAACCGATGCCACCTTGATCAAGTGCTGGGAGACAGTGGTGTGTGGCAGC
ATGGGGCGGCTCATTATGGTTACATTTGGTGGCAAAGTTCTTGGCGGGTTCCTCCACTCATTTGCAGAGGTGTACTTCAT
GGTGGTGTGGCTGATGTTCTACTTTGCAGCAAGGTGTAAGGAATCACGATTGGGTGGCCGTCAGTTTGGACTGGAGGATG
TGGCAGCTGCTCTCAATTGA------------------------------------------------------------
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>chr1B_1_TraesCS1B01G172800
GAAAAGAACCAAGAGTGAATCAGGAGTAACCACTGCAATAATTGATTGTACCCAACAGGCATGCAGTTATCTGTTACGCG
TGAGTAACATGGAAATAATTCTTTTTTTCTTCTTATGAGAAACACCTATAACTTTATTCATACTCATAGCAATTACAGGT
ACACCGATTTGGATCTAAGATCCAAGATAATACAAAGTAAGTCATATGAGTAAGAATTACAATGAAATCTTTTAAAAA-C
ACCTTCTTTGCGGTATCAATCTCTGCTCAAAGAGATACTCCAATGACTTTGGTAAAGAGGCTGTAATTGGACTGGAGCAA
CAATGGTGTCACTCTTTCACCCGCACGAACATTACCAATAATGA-TTTTTAAAAGTGCTTTGAGTCGCCCATCTAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGGGCCGGGGATGATC----CCCTAGAAGTGCAGACCATCGAATCACTATAT
CTTCACCATGGTGTCG---CAAGATTTTACCTTCACAAAGAATCAGACAAACACAAAAAAGCTTAACACAGCAACATAAA
CTCATCAAATCCGAATAG-CAGGTCTGCAAGGAGAG-AAACTCTCTAACCTCATGGTACCATCAAAAGGACGAGAGAAAA
ATTATTCTTGCAAAA-CTATGACAATCACTAGATGTTGATGAAAAACATAAAGATCTTGAAGATCTGAGG-CCCCCCACC
TCTTAACGTCAAGATGATAGCTGGAGGCGAGGGGAC----------------------------CTAAATTTCTTAGACT
ATGACAAGCGGCGGGAGAAAAGCCTACTTCTCTTCTAG------------------------------------------
--------------------------------------------------------------------------------
----------TACATGGAAAGATATCTCTAACCCAAACCAAAATCACATGCCGCCCTACCAAGCCCAACCAAAGCATCCA
GACTG------GCCCAAGCCCAAGCCTAGCCCGTGTCTCCAGTTCCCTTCGTCACCCGCGCGTCAACCTCC-GCATCCTC
GATTCCCCATTTGCCCTCGCCGCGCCTCGCCGATCCCCACAGCCCAGCGCTCCCACCGCCATGCCGGCAGCCGCCGTGCC
CGCGCCCGCGCCACCGGCGCCGAGCCTGGACGCGCGTACGGGCGGCCGCGTCCTGCGCCGAGCGGCGGCGCTCCTCCTCC
ACCCGGCCTCGCTCCCGCCGCTCCTCCTCGCGGCGCTCCTCCTCCTCCTCTTCCGGTCAGCCCTCTTTGCTGGCACGCTT
CGCCTCTCCTCCTTCGCGGACCGCGATCCCGCCCTCCGCTCTCTCCTTCTCCGCCTCTCGCCTCCCGCCCAGCCCTCCCC
GCCGGCTCCGCAGCACCACCTCCCCCGCCGCCGGTCCCCCTTCACTTCCTCCTCGTCCTCCCTCTCCGATGACGACTTCC
TCGTCGGACCCTTCGACCCGGTCTCGTCCGCCCCCTCCAGCCGACGCAACGCCTCCTACCACAACATCTTCTTCACCTCC
TTCTCCACCCCCAAACCCTACCCCGTACCCCTCTCCCAGCTGCTCCCCTCATCCGTTTCCCCCTTCCTCCTTGCCATCCA
CAACGAGACCTCCTCGCCGAAGCCTGCCTCGCCCCGGGGCGGTGAGCTCAGGCTGCTCGACCTGACCAGGCGCGACGCTG
CGGCGATCATCAACCTCCTCGCTCTGCTCTCGTCTGCTCATGTGCTCGCGATCCTTGGGTACATCACTGTGCACTCCATA
GCTCTCGGCACGGTGTTCGCTTCTGTAGCGGGGCGCCACCTGCCTGAACGGCGGCGAGGGTTCTTCCTTTCCGGTGCGGC
AATGGGCGCTAGGAGGCTCACTGGGTTTGCATTCCTGCGGTGGGCAACTCGGGATGCGGTTGTGCAGATGCTCTGCCTCT
GGTTCTTTGCAGACGTGCATGACCAGGCGCAGCTGTTCAGGCTCTTTGTGGTCGCCAAGCTCATGCCGTTTTCGGCATCT
GCAAACCCATGGCTTGCGGCAGCCATTTCTGGCCCAGAGCTCGATGGCTTCTTCATTGCGTGGGCTCTTCTTGATGCTGT
TGTATCGGTGTTGTTCACGGTGGTGCCATGGGTGGTTGCAATGGATCGTGATCCGCGTCCACCTGGCCGCAATGCTGTGA
AGGAAGGCTGCTATCTTGTGTCATTGATGGCAACCGATGCCACCTTGATCAAGTGCTGGGAGACAGTGGTGTGTGGCAGC
ATGGGGCGGCTCATTATGGTTACATTTGGTGGCAAAGTTCTTGGCGGGTTCCTCCACTCATTTGCAGAGGTGTACTTCAT
GGTGGTGTGGCTGATGTTCTACTTTGCAGCAAGGTGTAAGGAATCACGATTGGGTGGCCGTCAGTTTGGACTGGAGGATG
TGGCAGCTGCTCTCAATTGATTCATATGGTGAGTTGACATGGGCACATGGCCACATCACAGTCTGACATGGAGGCAAATC
TACCTGTCGATGCATGAACAGAGGTATATTTCATACCTCTTAGGGCTCATTCATGCCGTAAGACTGGTCTTGGTGGAGTA
GATTTGTGTAGTTCTCTTGATCTTCTGATTTGTGCTTGGATGATATATGATCCACACGAGGGAGAGAGAACTTGACAATG
CATGTATGTACAGTTTTTGCCCTCTGTGTGCAATCCATGTATAGTCACACCATTTGGCATACAAGAAGGGTTGTTTTGTT
CCCT-------TTCCATGGGAGGTAAGATCCCTTGTGATAGGTTTTGTAGCTTCAAGATGATGAGTGGACTTTATACA-G
TCCTATGGTGGGTTAGCAGAATTTACTGAAGGA-GCTGAAACCTGTGATCTTTTAGGTTCGCATAGTGGTTATTCTCTGT
TGATATTCATCATTTTGAACCTTTTCCATTAGCAGGCTACTTTATTTTTTAGACTTT-GGCTCCCTATCAGTACCCCAGC
-------------------TTGGCTCATTATTGAAATCCTTATGTCTTGCTCATTAT-----------------------
-----TGATAGGCATTTATCACGCTTG-ATTCAAACACATCTCCAGCACTTTGGCGCATTCCCATAAGCAAACATCACAT
TAGGCTCTATTTATTGGAAAAGACCCAGTGTCTACCAGCATCCTCCGTGTTTCTGGATTGACCAGTTTCTTATTAGTAAC
CCTACCCACTGCATGTCAACTGCTCTATGTCTCTATGCAGTCGAATATTAAGTTAGAAATGTTAAGGATGCTAGTGGATC
ACTGAAATATGTT-GAGTTCTTACAGTTCATTGATTGGTCATAAGAGAGGC--AGTCTCTCGGTTGGCAAGAAACCATTT
CGTGACTAATTTTAATTTAACCAAGATATGTTCAGAAGATAAAGTTGACTTGAGCAGAAAAAGTAATTGTAGAGCAAACT
ATTATGTATCGGGCTGCTATGCTGTTAGGGTTTGTTCTTTC
>chr1D_2
-AAAAGAACCGAGAGTGAAACAGTAGTAACCAC--CAATAATGGATTGTACCCAACATGCATGCAGTTATCTGTTATGCG
TGAGTAACATGGAAAGAATTCTTTTTTTCTT---ATGAGAAACACCTATAAATTTATTCATACTCATAGCAATTATAGGT
ATACTAATTTGGATCTAAGATCCAAGAAAATACAAAGTAAGTCATATGACTAAGAATAACAATGAAATCTCTTGAAAA-C
ACCTTCTTTGCGGTATCAATCTCTGCTTGAAGAGATACTCTAAAGACTTCGGTAAACAGGCTGTAATTGGACTGGAGCA-
CGATGGTGTCACTCTTTCACCCGCACGGACATTATCAATAATGG-TTTTTGAAAGCACTTCGAGTCGCCCATCCAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGGGTCGGGGATGACCACCCCCCTAGAAGTGAAGG-CGTCGAATCACTATAT
CTTCACCATGGTGTCGATGCAAGATTTCACCTCCACAAAGAATCAGACCAACAAAAAAAACCTTGACACATCAACATAAA
CTCATCAGATCCAAATAATAGAATCTGCAAAGACAAAAAACTCTCTAACCTCATGGCACCGTCAAAAGGACGAGAGGAAA
ATTA--CTCGCAAAA-CTATGATAATCATTAGACGTTGATGAAGAACATAGAAATCTTGAAGATCTGAGG-CCCCCCACC
TCTCAGCGCCAAGATGACAGCTGGAGGCGAGGGGACTTTTTTTTTCTTTTTGAGAGGTGGGGACCTAAATTTCTCAGGCT
ACTACAAGCGGCAGAAGAAAAACCTACTTCTCTTCTATAGTACTCCCTCCGTCCGGAAATACTTGTCGGAGAAATGAATG
TAAAAAATGATAAAAATAGATGTATCTAGAACTAAAATACATCTAGATACATTCATTTCTCCGACAAGTATTTCCGGACG
GAGGGAGTACTACATGGAAAGAAATCTCTAACCCAAACCAAAATCACATGCCGCCCTACCAAGCCCAACCAAAGCATCCA
GACTGGCCCAAGCCCAAGCCCAAGCCTAGCCCGTGTCTCCAGTTCCCTTCGTCACCCGCGCGTCAACCTCC-GCATCCTC
GATTCCCCATTTGCCCTCGCCGCGCCTCGCCGATCCCCACAGCCCAGCGCTCCCACCGCCATGCCGGCAGCCGCCGCGCC
CGCGCCCGCGCCACCGGCGCCGAGCCTGGACGCGCGTACGGGCGGCCGCGTCCTGCGCCGAGCGGCGGCGCACCTCCTCC
ACCCGGCCTCGCTCCCGCCGCTCCTCCTCGCGGCGCTCCTCCTCCTCCTCTTCCGGTCAGCCCTCTTTGCTGGCACGCTT
CGCCTCTCCTCCTTCGCGGACCGCGATCCCGCCCTCCGCTCCCTCCTTCTCCGCCTCTCCCCTCCCGCCCAGCCCTCCCC
GCCGGCTCCGCAGCACCACCTCCCCCGCCGTCGGTCCCCCTTCACTTCCTCCTCGTCCTCCCTCTCAGACGACGACTTCC
TCGTCGGACCCTTCGACCCGGTCTCCTCCGCCCCCTCCAGCCGACGCAACGCCTCCTACCACAACATCTTCTTCACCTCC
TTCTCCACCCCCAAACCCTACCCCGTACCCCTCTCCCAGCTGCTCCCCTCATCCGTTTCCCCCTTCCTCCTTGCCATCCA
CAACGACACTTCCTCGCAGAAGCCTGCCTCGCCCCGGGGCGGTGAGCTCAGGCTGCTCGACCTGACCAGGCGCGACGCTG
CGGCGATCATCAACCTCCTCGCTCTGCTCTCGTCTGCTCACGTGCTCGCGATCCTCGGGTACATCACAGTGCACTCCATA
GCTCTCGGCACGGTGTTCGCTTCTGTAGCGGGGCGCCACCTGCCTGAACGACGGCGAGGGTTCTTCCTTTCCGGTGCAGC
AATGGGCGCTAGGAGGCTCACTGGGTTTGCATTCCTGCGGTGGGCGACTCGGGATGCGGTTGTGCAGATGCTCTGCCTCT
GGTTCTTTGCTGACGTGCACGACCAGGCGCAGCTGTTCAGGCTCTTTGTGGTTGCCAAGCTCATGCCGTTTTCGGCATCT
GCAAACCCATGGCTTGCTGCAGCCATTTCTGGCCCAGAGCTTGATGGCTTCTTCATTGCGTGGGCTCTTCTTGATGCTGT
TGTATCGGTGTTGTTCACGGTGGTGCCATGGGTGGTTGCAATGGATCGTGATCCGCGTCCACCTGGCCGCAATGCTGTGA
AGGAAGGCTGCTATCTTGTGTCATTGATGGCAACCGATGCCACCTTGATCAAGTGCTGGGAGACAGTGGTGTGTGGCAGC
ATGGGGCGGCTCATTATGGTTACATTTGGTGGCAAAGTTCTTGGCGGGTTCCTCCACTCATTTGCAGAGGTGTACTTCAT
GGTGGTGTGGCTGATGTTCTACTTTGCAGCAAGGTGTAAGGAATCACGATTGGGTGGCCGTCAGTTTGGACTGGAGGATG
TGGCAGCTGCTCTCAGTTGATTCATTCAATGGCGAGTTG-----ACATGGCCACATCACAGTCTGACATGGAGGCAAATC
TACCTGTCGATGCATGAACAGAGGTATATTTCATACCTCTTAGTGCTCATTCATGCTGTAAGACTGGTCTTGGTGGAGTA
GATTTGTGTAGTTCTCTTGATCTTCTGATTTGTGCTTGGATGATATATGATCCACATGAGGGAGAGAGAACTTGACAATG
CATGTATGTACAGTTTTTGCCCTCTGTGTGCAATCCATGTATAGTCACACCATTTGGCATACAAGAAGGGTTGTTTGGTT
CCCTTTCCGGTTTCCATGGGAGGTAAGATGCCTTGTGATAGGTTTTGTAGCTTCAGGATGACGATTGGACTTTATACAGG
TCCTATGGTGGGCTAGCAGAATTTACTGAGGGAGGCTGAAACCTGTGATGTTTTAGGTTCGCATAGTGGTTATTCTCTGT
TGATATCCATCATTTTGAACCTTTTCCATTAGAAGGCTACTTTATTTTTTAGACTTT-GACTATCTATCAGTACCCCAGC
TTGTTCCACGAGAGAATTGTTGGCACATTATTGAAATTCTTATGTCTTGCTTCTTTTGGATGGCAATGTGTATCTCCAGT
TGCTCATTATTGAAATTGTTGGCTCATTATTCAAACACATCTCCAGCACTTTGGCGCATTCCCATAAGCAAACATCACAT
TAGGCTCTATTTATTGGAAAAGACCCAATGTCTACCAGCATCCTCCGTGTTTCTGGACTGGCCAGTTTCTTATTAGTAAC
CCTACCCACTGCATGTCAACTGCTCTACATCACTATGCAGTCGAATATTACGCTAGAAATGTTAAGGATGCTAGTGGATC
ACTGAAATATGTTTGAGTTCTTACAGTTCATTGATTGGTCATAAGAATGAGGTAGTCTCTCTGTTGGCAAGAAACCATTT
CGTGACTAATTTTCATTTAATCAAAATATGTTCAGAAGATAAAGCTGACTTAAACAGAAAAACTAATTGTAGATCAAACC
ATTATGTATCAGGCTGCTATGCTGTTAGGGTTTGTTCTTTC
>chr1A_53
----------------------------------------------------CAACGGGCATGCAGTTATCTGTTACGCG
TGAGTAA-------------------------------------------------------------------------
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-----------ACATGGAAAGAAATCTCTAACCCAAACCAAAACCACATGCCGCCCTA-CAAGCCCAACCAAAGCATCCA
GACTGGCCCAAGCCCAAGC------CTAGCCCGTGTCTCCAGTTCCCTTCGTCACCCGCGCGTCAACCTCCGGCATCCTC
GATTCCCCATTTGCCCTCGCCGCGCCTCGCCGATCCCCACAGCCCAGCGCTCCCACCGCCATGCCGGCAGCCG------C
CGCGCCCGCGCCACCGGCACCGAGCCTGGACGCGCGTACGGGTGGCCGCGTCCTGCGCCGAGCGGCGGCGCACCTCCTCC
ACCCGGCCTCGCTCCCTCCGCTCCTCCTCGCAGCGCTCCTCCTCCTCCTCTTCCGGTCAGCCCTCTTTGCTGGCACGCTT
CGCCTCTCCTCCTTCGCGGACCGCGATCCCGCCCTCCGCTCCCTCCTTCTCCGCCTCTCGCCTCCCGCCCAGCCCTCCCC
ACCGGCTCCGCAGCACCACCTCCCCCGCCGCCGGTCCCCCTTCACTTCCACCTCGTCCTCCCTCTCCGACGACGACTTCC
TCGTCGGACCCTTCGACCCGGTCTCGTCCGCCCCCTCCAGCCGACGCAACGCCTCCTACCACAACATCTTCTTCACGTCC
TTCTCCACCCCCAAACCCTACCCCGTACCCCTCTCCCAGCTGCTCCCCTCATCCGCTTCCCCCTTCCTCCTTGCCATCCA
CAACGAGACCTCCTCGCCGAAGCCTGCCTCGCCCCGGGGCGGTGAGCTCAGGCTGCTCGACCTGACCAGGCACGACGCTG
CGGCGATCATCAACCTCCTCGCTCTGCTCTCGTCTGCTCATGTGCTCGCGATCCTTGGGTACATCACTGTGCACTCCATA
GCTCTCGGCACGGTGTTCGCTTCTGTAGCGGGGCGCCACCTGCCTGAACGGCGGCGAGGGTTCTTCCTTTCCGGTGCGGC
AATGGGCGCTAGGAGGCTCACTGGGTTTGCATTCCTGCGGTGGGCGACTCGGGATGCGGTTGTGCAGATGCTCTGCCTCT
GGTTCTTTGCTGACGTGCACGACCAGGCGCAGCTGTTCAGGCTCTTTGTGGTTGCCAAGCTCATGCCGTTTTCAGCATCT
GCAAACCCATGGCTTGCTGCAGCCATTTCTGGCCCAGAGCTTGATGGCTTCTTCATCGCGTGGGCTCTTCTTGATGCTGT
TGTATCGGTGTTGTTCACGGTGGTGCCATGGGTGGTTGCAATGGATCGTGATCCGCGTCCACCTGGCCGCAATGCTGTGA
AGGAAGGCTGCTATCTTGTGTCATTGATGGCAACCGATGCCACCTTGATCAAGTGCTGGGAGACAGTGGTGTGTGGCAGC
ATGGGGCGGCTCATTATGGTTACATTTGGTGGCAAAGTTCTTGGCGGGTTCCTCCACTCATTCGCAGAGGTGTACTTCAT
GGTGGTGTGGCTGATGTTCTACTTTGCAGCAAGGTGTAAGGAATCACGATTGGGTGGCCGTCAGTTTGGACTGGAGGATG
TGGCAGCTGCTCTCAATTGATTCATTCAATGGCGAGTTG-----ACATGGCCACATCACAGTCTGACATGGAGGCAAATC
TACCTGTCGATGCATGAACAGAGGTATATTTCATACCTCTTAGTGCTCATTCATGCCGTAAGACTGGTCTTGGTGGAGTA
GATTTGTGTAGTTCTCTTGATCTTCTGATTTGTGCTTGGATGATATATGATCCACACGAGGGAGAGAGAACTTGACAATG
CATGTATGTACAGTTTTTGCCCTC--TGTGCAATCCATGTATAGTCACACCATTTGGCATACAAGAAGGGTTGTTTGGTT
CCCTTTCCAGTTTCCATGGGAGGTAAGATGCCTTGTGATAGGTTTTGTAGCTTCAGGATGACGATTGGACTTTATACAGG
TCCTATGGTCGGCTAGCAGAATTTACTGAGGGAGGCTGAAACCTGTGATGTTTTAGGTTCGCGTAGTGGTTATTCTCTGT
TGATATCCATCATTTTGAACCTTTTCCATTAGAAGGCTACTTTATTTTTTAGACTTTAGACTCCCTATCAGTACCCCAGC
TTGTTCTATGAGAGAACTGTTGGCTCATTATTGAAATTCTTATGTCTTGCTTCTTTTGGATGGCAATGTGTATCTCCAGT
TGATGTGGTAGGCATTTATCATGCTTG-ATTCAAACACATCTCCAGCACTTTGGCGCATTCCCATAAGCAAACATCACAT
TAGGCTCTATTTATTGGAAAAGACCCAATGTCTACCAGCATCC-------------------------------------
----------GCAAGTCAACTGCTCTATATCTCTATGCAGTCGAATATTACGCTAGAAATGTTAAGGATGCTAGTGGATC
ACTGAAATATGTTGG-GTTCTTACAGTTCATTGATTGGTCATAAGAATGAGGTAGTCTCTCTGTTGGCAAGAAACCATTT
CGTGACTAATTTTCATTTAATCAAGATATGTTCAGAAGATAAAGTTGACTTAAACAGAAAAACTAATTGTAGATCAAACC
ATTATGTATCAGGCTGCTATGCTGTTAGGGTTTGTTCTTTC
>chr7D_104
TTTTTGTTTTT---------------------------------------------------------------------
-------------------------------------AGAAACACTCTTAACTTTATTCATACTCATAACAATTAGATAT
ACACTGATTTGAACCTAAGATCCAACAAAATACAAAGTAACTCCTATGACTAAGAATTACAATGAAATCTCTTGAAAT-T
ACCTTCTTTGCGGTATCAATCTCTGCTCGAAGAAATACTCCAAAGACTTTGGTAAAGAAGCCGCAGTTGGACTAGAGTAA
CGGTGTTGTCATTTTTTCACCCGCATGAACATTCCCAATAATTG-TTTTTGAAAGCACCTTGAATCGCCCATCCAAAAAG
ATGAAAAGCCTTGATCGATGAACGTACTTGGGCCGGGGATGATC----CCCTAAAAATGCAGGCCATCGAATCACTATAT
CTTCACCATGGTGTCGATGCAAGATTTCACCACCACAAAGAATCAGACAAACAAAAAAA-TCTTGACACAACAACATAAA
CTCATCAGATCCGAATAATCGGATCTGCAAGAACAGAAAACTCTCAAACCTCATGGCACCGCCAAAAGGCCGAGAGAAAA
TTTATTCTCGCAAAA-CTATGATGATCACTAGACGTTGACGGAGAACATAAATATTTTGAAGATCCGAGGTTCCCCCACC
TTCCAACGCCAAGATGGCAGCTAGAGGCAAG-GGAC----------------------------CTAAATTTCTCAGA--
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>chr7D_118
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-------------------------------------AGAAACACCTGTAACTTTATTCATACTCATAACAATTACAGGT
ATACTGATTTGGACCTAAAATCGAAGAAAATACAAAGTAACTCCTATGACTAAGAATTGCAATGAAATCTCTTGAAAT-C
GCCTTCTTCGCGGTATCAATCTTTGCTCGAAGAAATACTCCAGAGACTTTGGTAAAGAAGCTGCAATTGGACTGGGGCAA
CGGTGTTGTCACTCTTTCACCCACACGAACATTACCAATAATGA-TTTTTGAAAGCGCCTTGAGTCGCCCATCCAAAAAG
ACGGGAAGCCTTGATCGATGAGCGTACTTGGGCCGGGGATGATC----CCCTAGAAGTGCAGGCCACCGAATCACTATAT
CCTCACCGTGGTGTCGATACAAGATTTTGCCTCAACAAAGAATCAGACCAACAAAAAAA-GCTTGACACAGCAACATAAA
CTCATCGGATTCGAATAATCGGATCTGCGAGGACAGAAAACTCTCAAACCTCATGGCACCACCAAAAGGATGAGAGGAAA
TTTATTCTCGCAAAA-CTATCATGATCACTGGAAGTTGACGAAGAACATAAAGATCTTGAAGATCCGAGGTCCCCCCACC
TCTCAGCGCTAAGATGGCAGCCGGAGGCGAGAAGAC----------------------------CTAAATTTC-------
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>chr3D_118
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-------------------------------------AGAAACACCTGTAAATTTGTTCATACTCATAACAATTACATGC
ACACTAGTTTGGACCTAAGATCCAAGAAAATACAAAGTAACTCCTATGACTAAGAATTACAATGAAATCTCTT-AAAT-C
ACCTTCTTCGCGGTATCAATCTCTACTCGAAGAAATACTCCAAAGACTTTGGTAAAGAAGTTGCAATTGGACTAGAGCAA
CAGTGTTGTCACTCTTTCACCCGCACGAACATTACCAGTAATGGTTTTTTTAAAGCGCCTTGAGTCGCCCATCTAAAAAG
ATGAGAAGCATTGATCGATGAACATACTTGGGTCAGGGCTGACC----GCCTACAAGTGCAGGCCGTCGAATCACTATAT
CTTCAACATGGTGTTGATGCAAGATTTCACCTTCACAAAGAATCAGACAAACAAAAAAA-GTTTGACACAGCAACATAAA
CTCATCAGATCCGAATAATCGAATCTATGAGGACAGAAAACTCTCAAACTTCATGGCACCGCTAAAAGGGCGAGAGGAAA
TTTATTCTCGCAAAAACTATGATGATCACTAGACATTAACGAAAAACATAAAGATCTTGAAGATCCGAGCTCCCCCCTTC
TTT--GCGCCAAGATGGCAGCTGGAGGCGAGAGGAC----------------------------CTAAAATTCTCAGA--
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--------------------TGGTGCCAACGGCGG---------------------------------------------
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>chr3D_120
--------------------------------------------------------------------------------
---------------------------------------AAACACCTGTAACTTTATTCATACTCATAACAATTACAGGT
ATATTGATTTTGATCTAAGATCCAAGAAAATACAAAGTAACTCCTATGACTAAGAATTACAATGAAATCTATT-GAAAAC
ACCTTCTTCGCGGTATCAATCTCTGCGCGAAGAAATACTCCAAAGACTTTGGTAAAGAGGCTGCAATTGGACCGGAGCGA
CGACATTGTCACTCTTTCACCCGCACGAACATTAGCAATAATGGT--TTTGAAAGCCCCTTGAGTCGCCCATCTAAAAAA
GATGGGAACCTTGATCGATGAACATACTAGGGCCGGGGATGATC----CCCTAGAAATGCAGGCCGTCAAATCACTATAT
CTTCACCATGATATCGATGAAAGATTTTACCTCCACAAAGAATCAGACCAACAAAAAAA-GCTTG--ACAGCAACATAAA
CTCACCAAATCCGAATACTCGGATCTGCGAAGATAGAAAACTCTCTAATCTGATGGGACCGCCAAAAGAACGAGAGAAAA
TTTATTCTCAG-AAA-CTATGATGATCACTAGACGTTGACGAAGAATATAGAGGTCTTGAAGATCCGAGATCCCCC-ACC
TCTCAGCGTGAAGATGACAGCCGAAGGCGAGGGGAC----------------------------CTAAATTTCT------
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>chrUn_121
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----------------------------------------AACACCTGTAACTTTATTCATACTCATAAAAAATACAGGT
ACACTGATTTGGACCTAAGATCCAAAAAAATACAAAGTAACTCATATGACTAAGAATTACAATGAAATCTCTT-AAAAAC
ACCTTCTTCGCGGTATCAATCTCTGCTCGAAGAAATACTTCAAAGACTTCGGTAAAGAGGCTGCAATTAGACTGAAGCAA
CGATGTTGCCACTCTTTCACCCGCACGAACATTACCAATAATGGTTTTT-GAAAGCACCTTGAGTCGCCCATCCAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGGGCCAGGGATGATC----CCCTAGAAGTGCAGGCCGTCGAATCACTATAT
CTTCACCATGATGTCATTGAAAGATTTCACCTCCACAAAGAATCAGACCAACAAAATTT--TTTGACACAGCAACATAAA
CTCATCAGATCCGAATAATCGGATCTGTGAGGACAAAAAACTCTCTAATCTCATGGCACCGTCAAAAGAACGAGAGAAAA
TTTATTCTCAC-AAAACTTTAATAATAACTAGACGTTGACGAAAAACATAGAGGGCTTGAAAATCCGAGC-TCCCC-ACC
TATCAGCGTCAAGATGACAACCGGAGATGAGTGGAC----------------------------CTAAATTTTTCAGA--
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>chr3D_121
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----------------------------------------AACACCTGTAACTTTATTCATACTCATAAAAAATACAGGT
ACACTGATTTGGACCTAAGATCCAAAAAAATACAAAGTAACTCATATGACTAAGAATTACAATGAAATCTCTT-AAAAAC
ACCTTCTTCGCGGTATCAATCTCTGCTCGAAGAAATACTTCAAAGACTTCGGTAAAGAGGCTGCAATTAGACTGAAGCAA
CGATGTTGCCACTCTTTCACCCGCACGAACATTACCAATAATGGTTTTT-GAAAGCACCTTGAGTCGCCCATCCAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGGGCCAGGGATGATC----CCCTAGAAGTGCAGGCCGTCGAATCACTATAT
CTTCACCATGATGTCATTGAAAGATTTCACCTCCACAAAGAATCAGACCAACAAATTTT--TTTGACACAGCAACATAAA
CTCATCAGATCCGAATAATCGGATCTGTGATGACAGAAAACTCTCTAATCTCATGGCACCGTCAAAAGAACGAGAGAAAA
TTTATTCTCAC-AAAACTTTAATAATAACTAGACGTTGACGAAAAACATAGAGGGCTTGAAAATCCGAGC-TCCCC-ACC
TATCAGCGTCAAGATGACAACCGGAGATGAGTGGAC----------------------------CTAAATTTTTCAGA--
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>chr3D_121
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----------------------------------------AACACCTGTAACTTTATTCATACTCATAAAAAATACAGGT
ACACTGATTTGGACCTAAGATCCAAAAAAATACAAAGTAACTCATATGACTAAGAATTACAATGAAATCTCTT-AAAAAC
ACCTTCTTCGCGGTATCAATCTCTGCTCGAAGAAATACTTCAAAGACTTCGGTAAAGAGGCTGCAATTAGACTGAAGCAA
CGATGTTGCCACTCTTTCACCCGCACGAACATTACCAATAATGATTTTT-GAAAGCACCTTGAGTCGCCCATCCAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGGACCAGGGATGATC----CCCTAGAAGTGCAGGCCGTCGAATCACTATAT
CTTCACCATGATGTCATTGAAAGATTTCACCTCCACAAAGAATCAGACCAACAAATTTT--TTTGACACAGCAACATAAA
CTCATCAGATCCGAATAATCGGATCTGTGATGACAGAAAACTCTCTAATCTCATGGCACCGTCAAAAAAACGAGAGAAAA
TTTATTCTCAC-AAAACTTTAATAATAACTAGACGTTGACGAAAAACATAGAGGGCTTGAAAATCCGAGC-TCCCC-ACC
TATCAGCGTCAAGATGACAACCGGAGATGAGTGGAC----------------------------CTAAATTTTTCAGA--
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>chr3D_121
--------------------------------------------------------------------------------
----------------------------------------AACACCTGTAACTTTATTCATACTCATAAAAAATACACGT
ACACTGATTTGGACCTAAGATCCAAAAAAATACAAAGTAACTCATATGACTAAGAATTACAATGAAATCTCTT-AAAAAC
ACCTTCTTCGCGGTATCAATCTCTGCTCGAAGAAATACTTCAAAGACTTCGGTAAAGAGGCTGCAATTAGACTGAAGCAA
CGATGTTGCCACTCTTTCACCCGCACGAACATTACCAATAATGGTTTTT-GAAAGCACCTTGAGTCGCCCATCCAAAAAG
ATGGGAAGCCTTGATCGATGAACGTACTTGCGCCAGGGATGATC----CCCTAGAAGTGCAGGCCGTCGAATCACTATAT
CTTCACCATGATGTCATTGAAAGATTTCACCTCCATAAAGAATCAGACCAACAAATTTT--TTTGACACAGCAACATAAA
CTCATCAGATCCGAATAATCGGATCTGTGAGGACAGAAAACTCTCTAATCTCATGGCACCGTCAAAAGAACGAGAGAAAA
TTTATTCTCAC-AAAACTTTAATAATAACTAGACGTTGACGAAAAACATAGAGGGCTTGAAAATCCGAGC-TCCCC-ACC
TATCAGCGTCAAGATGACAACCGGAGATGAGTGGAC----------------------------CTAAATTTTTCAGA--
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-----------------------------------------
>SNPs
S---------S--------S---S---------SS-------S-------------------------------------
---------------S---------------SSS----------------------------------------------
----S----------------------S---------------------S--------------------S--S------
----------------------------S--------------S------------------------------------
--------------------------------------------------S----S------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------S----------S---------------
-----------------S--S-S----------S----------------------S-----------------------
--------S-------------S----------S----------------------------------------------
---S-------------S--------------------------------------------------------S-----
-SS---------S-S------S---------------S------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------------------------------------------------S--------
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-----------------------------------------S--------------------------------------
---------------------------------------------------------------------S----------
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---------------------------------------------S----------------------------------
----------S--------S--------------------------------S---------------------------
-----------------S-----------------------S--------------------------------------
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--------------------------------------------------------------------------------
-------------------------SSSS--SSSS-SSSSSSSS------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------S-------------------------S-----S--S---------------
------------S----------------S-------------------S------------------------------
------S-------------------------S--------------------------S--------------------
-------------------------------------S-------------SS--S------------------------
-------S-------------S----------------------------------------------------------
---------------------------S-----------------------------S--S-------------------
----------------------------S---------------------S-S---------------------------
----------------------------------------------SS-SS----------S------------------
-------------S------S------------------------------S-S--------S----------S-----S
----------S------------------------------
>forward_269
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--------TGCGGTATCAATCTCTGCTCA---------------------------------------------------
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>reverse_2122
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-----------------------------------------CGATGGCTTCTTCATTGCGT-------------------
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>forward_2011
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-----------------------------------------------------------------------TCTGCCTCT
GGTTCTTTGCA---------------------------------------------------------------------
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>reverse_3228
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---------------------------GTGTCTACCAGCATCCTCCG---------------------------------
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-----------------------------------------
