Multiple sequence alignment - TraesCS1B01G164500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G164500 chr1B 100.000 2644 0 0 893 3536 286975908 286973265 0.000000e+00 4883.0
1 TraesCS1B01G164500 chr1B 100.000 697 0 0 1 697 286976800 286976104 0.000000e+00 1288.0
2 TraesCS1B01G164500 chr1B 91.228 57 3 2 3361 3416 301283030 301282975 3.790000e-10 76.8
3 TraesCS1B01G164500 chr1D 92.280 2228 102 30 893 3099 200439489 200441667 0.000000e+00 3097.0
4 TraesCS1B01G164500 chr1D 91.156 147 6 5 554 697 200439334 200439476 3.600000e-45 193.0
5 TraesCS1B01G164500 chr1D 94.521 73 4 0 506 578 200439258 200439330 2.880000e-21 113.0
6 TraesCS1B01G164500 chr1A 90.761 1169 70 19 893 2052 253720404 253721543 0.000000e+00 1526.0
7 TraesCS1B01G164500 chr1A 93.015 816 43 9 2176 2980 253721540 253722352 0.000000e+00 1179.0
8 TraesCS1B01G164500 chr1A 85.577 520 58 6 1 506 583931655 583932171 2.420000e-146 529.0
9 TraesCS1B01G164500 chr1A 89.865 148 7 7 554 697 253720247 253720390 2.170000e-42 183.0
10 TraesCS1B01G164500 chr1A 94.444 54 2 1 459 512 583932310 583932362 8.140000e-12 82.4
11 TraesCS1B01G164500 chr4B 91.506 518 28 7 1 508 546667714 546667203 0.000000e+00 699.0
12 TraesCS1B01G164500 chr4B 95.062 243 12 0 1000 1242 637981049 637980807 1.990000e-102 383.0
13 TraesCS1B01G164500 chr4B 92.593 54 3 1 3362 3415 624402401 624402349 3.790000e-10 76.8
14 TraesCS1B01G164500 chr3B 90.962 520 29 6 1 508 734585757 734586270 0.000000e+00 684.0
15 TraesCS1B01G164500 chr7B 90.595 521 30 7 1 508 484916893 484916379 0.000000e+00 673.0
16 TraesCS1B01G164500 chr7B 90.403 521 31 7 1 508 484922165 484921651 0.000000e+00 667.0
17 TraesCS1B01G164500 chr7B 86.772 189 20 4 40 223 364047034 364047222 4.630000e-49 206.0
18 TraesCS1B01G164500 chr7B 89.655 58 5 1 3358 3415 415227024 415227080 4.900000e-09 73.1
19 TraesCS1B01G164500 chr7B 87.302 63 4 4 3345 3407 263930724 263930782 6.330000e-08 69.4
20 TraesCS1B01G164500 chr2A 90.286 525 31 8 1 512 655659614 655659097 0.000000e+00 669.0
21 TraesCS1B01G164500 chr6B 90.135 517 33 5 1 508 650659364 650658857 0.000000e+00 656.0
22 TraesCS1B01G164500 chr6B 86.772 189 20 4 40 223 157561913 157562101 4.630000e-49 206.0
23 TraesCS1B01G164500 chr5A 95.473 243 11 0 1000 1242 677131728 677131486 4.280000e-104 388.0
24 TraesCS1B01G164500 chr5A 84.674 261 40 0 2276 2536 677130429 677130169 9.740000e-66 261.0
25 TraesCS1B01G164500 chr4D 95.473 243 11 0 1000 1242 497174976 497174734 4.280000e-104 388.0
26 TraesCS1B01G164500 chr6D 86.842 304 26 4 143 433 395365821 395366123 9.460000e-86 327.0
27 TraesCS1B01G164500 chr3D 93.902 164 10 0 3373 3536 396486943 396486780 7.580000e-62 248.0
28 TraesCS1B01G164500 chr3D 84.058 138 11 4 3095 3232 607513918 607514044 4.790000e-24 122.0
29 TraesCS1B01G164500 chr6A 88.696 115 13 0 3422 3536 102449541 102449427 1.320000e-29 141.0
30 TraesCS1B01G164500 chr7A 92.857 56 2 2 3360 3415 31884523 31884470 2.930000e-11 80.5
31 TraesCS1B01G164500 chr4A 92.593 54 2 2 3363 3415 559522984 559523036 3.790000e-10 76.8
32 TraesCS1B01G164500 chr7D 88.710 62 5 2 3351 3411 509815760 509815820 1.360000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G164500 chr1B 286973265 286976800 3535 True 3085.500000 4883 100.000000 1 3536 2 chr1B.!!$R2 3535
1 TraesCS1B01G164500 chr1D 200439258 200441667 2409 False 1134.333333 3097 92.652333 506 3099 3 chr1D.!!$F1 2593
2 TraesCS1B01G164500 chr1A 253720247 253722352 2105 False 962.666667 1526 91.213667 554 2980 3 chr1A.!!$F1 2426
3 TraesCS1B01G164500 chr1A 583931655 583932362 707 False 305.700000 529 90.010500 1 512 2 chr1A.!!$F2 511
4 TraesCS1B01G164500 chr4B 546667203 546667714 511 True 699.000000 699 91.506000 1 508 1 chr4B.!!$R1 507
5 TraesCS1B01G164500 chr3B 734585757 734586270 513 False 684.000000 684 90.962000 1 508 1 chr3B.!!$F1 507
6 TraesCS1B01G164500 chr7B 484916379 484916893 514 True 673.000000 673 90.595000 1 508 1 chr7B.!!$R1 507
7 TraesCS1B01G164500 chr7B 484921651 484922165 514 True 667.000000 667 90.403000 1 508 1 chr7B.!!$R2 507
8 TraesCS1B01G164500 chr2A 655659097 655659614 517 True 669.000000 669 90.286000 1 512 1 chr2A.!!$R1 511
9 TraesCS1B01G164500 chr6B 650658857 650659364 507 True 656.000000 656 90.135000 1 508 1 chr6B.!!$R1 507
10 TraesCS1B01G164500 chr5A 677130169 677131728 1559 True 324.500000 388 90.073500 1000 2536 2 chr5A.!!$R1 1536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1178 0.769247 AAACCCTCGCAAACCCTAGT 59.231 50.0 0.00 0.00 0.00 2.57 F
1931 2378 0.541392 CTGCTGTGGCCCTGTATACA 59.459 55.0 5.25 5.25 37.74 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2809 2.064014 GCAAGGCTGAACAAAAGCATC 58.936 47.619 0.0 0.0 42.69 3.91 R
3426 4141 0.107703 ACACATTCGCACATCCCGAT 60.108 50.000 0.0 0.0 34.35 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 58 3.372025 GCTTTCAGTATCCCAATCACCCT 60.372 47.826 0.00 0.00 0.00 4.34
227 233 8.057536 AGACTTAGACGACACAAAAGATAGAT 57.942 34.615 0.00 0.00 0.00 1.98
258 264 0.950836 CACAGAATTGGTTGCCGTCA 59.049 50.000 0.00 0.00 0.00 4.35
259 265 1.541147 CACAGAATTGGTTGCCGTCAT 59.459 47.619 0.00 0.00 0.00 3.06
360 384 6.859017 TCTAAACGGAAAATAATTTGGCCTC 58.141 36.000 3.32 0.00 0.00 4.70
373 397 8.918202 ATAATTTGGCCTCTTACGATATTTGA 57.082 30.769 3.32 0.00 0.00 2.69
417 441 1.221466 CTTGTCTGCAGTTCCGCGAA 61.221 55.000 14.67 0.00 33.35 4.70
549 762 2.752903 AGCACTAGTTTTATTTGGCCGG 59.247 45.455 0.00 0.00 0.00 6.13
555 768 2.560981 AGTTTTATTTGGCCGGGAGTTG 59.439 45.455 2.18 0.00 0.00 3.16
640 880 5.246981 TCAATTCCACCAAAGTCTCATCT 57.753 39.130 0.00 0.00 0.00 2.90
937 1178 0.769247 AAACCCTCGCAAACCCTAGT 59.231 50.000 0.00 0.00 0.00 2.57
1273 1514 2.781595 TTTCTTCCCTCGCGGCTGTC 62.782 60.000 6.13 0.00 0.00 3.51
1369 1615 5.511202 CCCATTTGTAGGATTTGTGCAACTT 60.511 40.000 0.00 0.00 38.04 2.66
1422 1669 6.509418 TTTAGTAGCTGTAATGGGCTTTTG 57.491 37.500 0.00 0.00 39.65 2.44
1448 1695 5.063880 GCCTCTTCTTAGAAGGTTTGACAA 58.936 41.667 20.29 0.00 0.00 3.18
1476 1723 0.957395 CTGCCTGCTTGGTAGGTGTG 60.957 60.000 6.54 0.00 43.67 3.82
1477 1724 1.073199 GCCTGCTTGGTAGGTGTGT 59.927 57.895 3.84 0.00 37.73 3.72
1479 1726 0.687354 CCTGCTTGGTAGGTGTGTCT 59.313 55.000 0.00 0.00 30.75 3.41
1593 1841 9.661563 AATTATTGTTGTAGTAATCCGAGTTGA 57.338 29.630 0.00 0.00 0.00 3.18
1594 1842 9.832445 ATTATTGTTGTAGTAATCCGAGTTGAT 57.168 29.630 0.00 0.00 0.00 2.57
1648 1896 4.407621 TCAAATGGTAGATAAGGCGAGGAA 59.592 41.667 0.00 0.00 0.00 3.36
1667 1915 3.243201 GGAAGGTTGAAGCTGAAGTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
1694 1944 6.318648 AGTGTTTGTTGTACACATCATGTTCT 59.681 34.615 0.00 0.00 46.42 3.01
1746 1996 7.901029 TGTTGCATGGAATACTAAATTTGGAA 58.099 30.769 8.72 0.00 0.00 3.53
1747 1997 8.538701 TGTTGCATGGAATACTAAATTTGGAAT 58.461 29.630 8.72 0.00 0.00 3.01
1767 2186 5.430886 GAATTTTGATTGCCCCTGCTTTAT 58.569 37.500 0.00 0.00 38.71 1.40
1875 2294 3.067320 AGTTCTGCTTTGCTTGAGGAAAC 59.933 43.478 0.00 0.00 32.03 2.78
1876 2295 2.653726 TCTGCTTTGCTTGAGGAAACA 58.346 42.857 0.00 0.00 32.03 2.83
1902 2349 8.788238 AGGATTTCTGCCCAAAAAGATTATAT 57.212 30.769 0.00 0.00 0.00 0.86
1930 2377 0.541863 ACTGCTGTGGCCCTGTATAC 59.458 55.000 0.00 0.00 37.74 1.47
1931 2378 0.541392 CTGCTGTGGCCCTGTATACA 59.459 55.000 5.25 5.25 37.74 2.29
1932 2379 1.141657 CTGCTGTGGCCCTGTATACAT 59.858 52.381 5.91 0.00 37.74 2.29
2014 2678 8.588290 AAGATATGTATGTTTTGCCCTTTGTA 57.412 30.769 0.00 0.00 0.00 2.41
2024 2688 6.760770 TGTTTTGCCCTTTGTATTCTTTGAAG 59.239 34.615 0.00 0.00 0.00 3.02
2068 2732 8.887717 GGCTATATTGAATATCTCGATTTGCTT 58.112 33.333 0.13 0.00 30.20 3.91
2069 2733 9.699985 GCTATATTGAATATCTCGATTTGCTTG 57.300 33.333 0.13 0.00 30.20 4.01
2087 2751 3.802685 GCTTGTGGTAATAGGCTAGAACG 59.197 47.826 0.00 0.00 0.00 3.95
2088 2752 4.441079 GCTTGTGGTAATAGGCTAGAACGA 60.441 45.833 0.00 0.00 0.00 3.85
2097 2761 3.550437 AGGCTAGAACGATTTGCATCT 57.450 42.857 0.00 0.00 0.00 2.90
2145 2809 7.869429 AGCATTTCTTTTTGTTCACTTATCCTG 59.131 33.333 0.00 0.00 0.00 3.86
2152 2816 6.899393 TTTGTTCACTTATCCTGATGCTTT 57.101 33.333 0.00 0.00 0.00 3.51
2156 2820 6.265196 TGTTCACTTATCCTGATGCTTTTGTT 59.735 34.615 0.00 0.00 0.00 2.83
2161 2825 1.888512 TCCTGATGCTTTTGTTCAGCC 59.111 47.619 0.00 0.00 36.41 4.85
2164 2828 3.314553 CTGATGCTTTTGTTCAGCCTTG 58.685 45.455 0.00 0.00 36.33 3.61
2174 2838 3.916761 TGTTCAGCCTTGCATTTCATTC 58.083 40.909 0.00 0.00 0.00 2.67
2786 3461 0.036732 TTGCCTCTACAGCCTTGGTG 59.963 55.000 0.00 0.00 37.06 4.17
2867 3543 9.425893 CAATTACTTCTCGTGCATTTTGTATAG 57.574 33.333 0.00 0.00 0.00 1.31
2868 3544 8.718102 ATTACTTCTCGTGCATTTTGTATAGT 57.282 30.769 0.00 0.00 0.00 2.12
2869 3545 6.408858 ACTTCTCGTGCATTTTGTATAGTG 57.591 37.500 0.00 0.00 0.00 2.74
3018 3724 4.236935 GACAATTCGAACGTACCCACTTA 58.763 43.478 0.00 0.00 0.00 2.24
3022 3728 2.726821 TCGAACGTACCCACTTATCCT 58.273 47.619 0.00 0.00 0.00 3.24
3023 3729 2.424601 TCGAACGTACCCACTTATCCTG 59.575 50.000 0.00 0.00 0.00 3.86
3024 3730 2.424601 CGAACGTACCCACTTATCCTGA 59.575 50.000 0.00 0.00 0.00 3.86
3025 3731 3.067742 CGAACGTACCCACTTATCCTGAT 59.932 47.826 0.00 0.00 0.00 2.90
3026 3732 4.369182 GAACGTACCCACTTATCCTGATG 58.631 47.826 0.00 0.00 0.00 3.07
3027 3733 2.102588 ACGTACCCACTTATCCTGATGC 59.897 50.000 0.00 0.00 0.00 3.91
3029 3735 3.181465 CGTACCCACTTATCCTGATGCTT 60.181 47.826 0.00 0.00 0.00 3.91
3030 3736 4.683400 CGTACCCACTTATCCTGATGCTTT 60.683 45.833 0.00 0.00 0.00 3.51
3031 3737 4.322057 ACCCACTTATCCTGATGCTTTT 57.678 40.909 0.00 0.00 0.00 2.27
3032 3738 4.019174 ACCCACTTATCCTGATGCTTTTG 58.981 43.478 0.00 0.00 0.00 2.44
3033 3739 4.263905 ACCCACTTATCCTGATGCTTTTGA 60.264 41.667 0.00 0.00 0.00 2.69
3034 3740 4.096984 CCCACTTATCCTGATGCTTTTGAC 59.903 45.833 0.00 0.00 0.00 3.18
3036 3742 6.115446 CCACTTATCCTGATGCTTTTGACTA 58.885 40.000 0.00 0.00 0.00 2.59
3039 3745 6.595716 ACTTATCCTGATGCTTTTGACTACAC 59.404 38.462 0.00 0.00 0.00 2.90
3048 3763 1.424403 TTTGACTACACGTCGGCATG 58.576 50.000 0.00 0.00 45.87 4.06
3057 3772 0.319083 ACGTCGGCATGTTGGAACTA 59.681 50.000 0.00 0.00 0.00 2.24
3067 3782 5.392380 GGCATGTTGGAACTACTTTCATGAG 60.392 44.000 0.00 0.00 35.70 2.90
3075 3790 7.044181 TGGAACTACTTTCATGAGATGATGAC 58.956 38.462 0.00 0.00 39.39 3.06
3094 3809 2.895404 GACTAGTTGACTACCCACCACA 59.105 50.000 0.00 0.00 0.00 4.17
3099 3814 2.812011 GTTGACTACCCACCACATGAAC 59.188 50.000 0.00 0.00 0.00 3.18
3100 3815 2.334977 TGACTACCCACCACATGAACT 58.665 47.619 0.00 0.00 0.00 3.01
3101 3816 3.512496 TGACTACCCACCACATGAACTA 58.488 45.455 0.00 0.00 0.00 2.24
3102 3817 3.513912 TGACTACCCACCACATGAACTAG 59.486 47.826 0.00 0.00 0.00 2.57
3103 3818 3.767673 GACTACCCACCACATGAACTAGA 59.232 47.826 0.00 0.00 0.00 2.43
3104 3819 4.362677 ACTACCCACCACATGAACTAGAT 58.637 43.478 0.00 0.00 0.00 1.98
3105 3820 5.525484 ACTACCCACCACATGAACTAGATA 58.475 41.667 0.00 0.00 0.00 1.98
3106 3821 5.598830 ACTACCCACCACATGAACTAGATAG 59.401 44.000 0.00 0.00 0.00 2.08
3107 3822 3.711704 ACCCACCACATGAACTAGATAGG 59.288 47.826 0.00 0.00 0.00 2.57
3108 3823 3.495100 CCCACCACATGAACTAGATAGGC 60.495 52.174 0.00 0.00 0.00 3.93
3109 3824 3.134623 CCACCACATGAACTAGATAGGCA 59.865 47.826 0.00 0.00 0.00 4.75
3110 3825 4.202398 CCACCACATGAACTAGATAGGCAT 60.202 45.833 0.00 0.00 0.00 4.40
3111 3826 4.993584 CACCACATGAACTAGATAGGCATC 59.006 45.833 0.00 0.00 0.00 3.91
3112 3827 4.240888 CCACATGAACTAGATAGGCATCG 58.759 47.826 0.00 0.00 36.20 3.84
3113 3828 3.677121 CACATGAACTAGATAGGCATCGC 59.323 47.826 0.00 0.00 36.20 4.58
3114 3829 2.706555 TGAACTAGATAGGCATCGCG 57.293 50.000 0.00 0.00 36.20 5.87
3115 3830 1.335964 TGAACTAGATAGGCATCGCGC 60.336 52.381 0.00 0.00 36.20 6.86
3151 3866 2.941210 GGTTGAGCCGTGAAATCCA 58.059 52.632 0.00 0.00 0.00 3.41
3152 3867 1.243902 GGTTGAGCCGTGAAATCCAA 58.756 50.000 0.00 0.00 0.00 3.53
3153 3868 1.611491 GGTTGAGCCGTGAAATCCAAA 59.389 47.619 0.00 0.00 0.00 3.28
3154 3869 2.035321 GGTTGAGCCGTGAAATCCAAAA 59.965 45.455 0.00 0.00 0.00 2.44
3155 3870 3.049912 GTTGAGCCGTGAAATCCAAAAC 58.950 45.455 0.00 0.00 0.00 2.43
3156 3871 2.302260 TGAGCCGTGAAATCCAAAACA 58.698 42.857 0.00 0.00 0.00 2.83
3157 3872 2.690497 TGAGCCGTGAAATCCAAAACAA 59.310 40.909 0.00 0.00 0.00 2.83
3158 3873 3.320541 TGAGCCGTGAAATCCAAAACAAT 59.679 39.130 0.00 0.00 0.00 2.71
3159 3874 4.520874 TGAGCCGTGAAATCCAAAACAATA 59.479 37.500 0.00 0.00 0.00 1.90
3160 3875 4.805219 AGCCGTGAAATCCAAAACAATAC 58.195 39.130 0.00 0.00 0.00 1.89
3161 3876 4.279671 AGCCGTGAAATCCAAAACAATACA 59.720 37.500 0.00 0.00 0.00 2.29
3162 3877 4.985409 GCCGTGAAATCCAAAACAATACAA 59.015 37.500 0.00 0.00 0.00 2.41
3163 3878 5.637387 GCCGTGAAATCCAAAACAATACAAT 59.363 36.000 0.00 0.00 0.00 2.71
3164 3879 6.809196 GCCGTGAAATCCAAAACAATACAATA 59.191 34.615 0.00 0.00 0.00 1.90
3165 3880 7.009174 GCCGTGAAATCCAAAACAATACAATAG 59.991 37.037 0.00 0.00 0.00 1.73
3166 3881 8.026607 CCGTGAAATCCAAAACAATACAATAGT 58.973 33.333 0.00 0.00 0.00 2.12
3167 3882 8.849490 CGTGAAATCCAAAACAATACAATAGTG 58.151 33.333 0.00 0.00 0.00 2.74
3168 3883 8.647226 GTGAAATCCAAAACAATACAATAGTGC 58.353 33.333 0.00 0.00 0.00 4.40
3169 3884 8.363390 TGAAATCCAAAACAATACAATAGTGCA 58.637 29.630 0.00 0.00 0.00 4.57
3170 3885 9.369904 GAAATCCAAAACAATACAATAGTGCAT 57.630 29.630 0.00 0.00 0.00 3.96
3171 3886 8.706492 AATCCAAAACAATACAATAGTGCATG 57.294 30.769 0.00 0.00 0.00 4.06
3172 3887 6.629128 TCCAAAACAATACAATAGTGCATGG 58.371 36.000 0.00 0.00 0.00 3.66
3173 3888 6.210385 TCCAAAACAATACAATAGTGCATGGT 59.790 34.615 0.00 0.00 30.85 3.55
3174 3889 6.873076 CCAAAACAATACAATAGTGCATGGTT 59.127 34.615 0.00 0.00 27.28 3.67
3175 3890 7.063308 CCAAAACAATACAATAGTGCATGGTTC 59.937 37.037 0.00 0.00 25.03 3.62
3176 3891 6.832520 AACAATACAATAGTGCATGGTTCA 57.167 33.333 0.00 0.00 0.00 3.18
3177 3892 6.441093 ACAATACAATAGTGCATGGTTCAG 57.559 37.500 0.00 0.00 0.00 3.02
3178 3893 5.945784 ACAATACAATAGTGCATGGTTCAGT 59.054 36.000 0.00 0.00 0.00 3.41
3179 3894 6.127925 ACAATACAATAGTGCATGGTTCAGTG 60.128 38.462 0.00 0.00 0.00 3.66
3180 3895 2.489329 ACAATAGTGCATGGTTCAGTGC 59.511 45.455 0.00 0.00 41.61 4.40
3181 3896 1.755179 ATAGTGCATGGTTCAGTGCC 58.245 50.000 0.00 0.00 40.56 5.01
3182 3897 0.673333 TAGTGCATGGTTCAGTGCCG 60.673 55.000 0.00 0.00 40.56 5.69
3183 3898 1.965930 GTGCATGGTTCAGTGCCGA 60.966 57.895 0.00 0.00 40.56 5.54
3184 3899 1.228094 TGCATGGTTCAGTGCCGAA 60.228 52.632 0.00 0.00 40.56 4.30
3185 3900 0.821301 TGCATGGTTCAGTGCCGAAA 60.821 50.000 0.00 0.00 40.56 3.46
3186 3901 0.313672 GCATGGTTCAGTGCCGAAAA 59.686 50.000 0.00 0.00 35.35 2.29
3187 3902 1.067635 GCATGGTTCAGTGCCGAAAAT 60.068 47.619 0.00 0.00 35.35 1.82
3188 3903 2.163412 GCATGGTTCAGTGCCGAAAATA 59.837 45.455 0.00 0.00 35.35 1.40
3189 3904 3.366883 GCATGGTTCAGTGCCGAAAATAA 60.367 43.478 0.00 0.00 35.35 1.40
3190 3905 4.677779 GCATGGTTCAGTGCCGAAAATAAT 60.678 41.667 0.00 0.00 35.35 1.28
3191 3906 5.410067 CATGGTTCAGTGCCGAAAATAATT 58.590 37.500 0.00 0.00 0.00 1.40
3192 3907 5.054390 TGGTTCAGTGCCGAAAATAATTC 57.946 39.130 0.00 0.00 0.00 2.17
3193 3908 4.520874 TGGTTCAGTGCCGAAAATAATTCA 59.479 37.500 0.00 0.00 0.00 2.57
3194 3909 5.184864 TGGTTCAGTGCCGAAAATAATTCAT 59.815 36.000 0.00 0.00 0.00 2.57
3195 3910 5.743872 GGTTCAGTGCCGAAAATAATTCATC 59.256 40.000 0.00 0.00 0.00 2.92
3196 3911 6.321717 GTTCAGTGCCGAAAATAATTCATCA 58.678 36.000 0.00 0.00 0.00 3.07
3197 3912 6.507958 TCAGTGCCGAAAATAATTCATCAA 57.492 33.333 0.00 0.00 0.00 2.57
3198 3913 6.918626 TCAGTGCCGAAAATAATTCATCAAA 58.081 32.000 0.00 0.00 0.00 2.69
3199 3914 7.546358 TCAGTGCCGAAAATAATTCATCAAAT 58.454 30.769 0.00 0.00 0.00 2.32
3200 3915 8.681806 TCAGTGCCGAAAATAATTCATCAAATA 58.318 29.630 0.00 0.00 0.00 1.40
3201 3916 9.467258 CAGTGCCGAAAATAATTCATCAAATAT 57.533 29.630 0.00 0.00 0.00 1.28
3243 3958 8.821147 TTCAAATAAAGTAAGTAAGCTCGACA 57.179 30.769 0.00 0.00 0.00 4.35
3244 3959 8.997621 TCAAATAAAGTAAGTAAGCTCGACAT 57.002 30.769 0.00 0.00 0.00 3.06
3249 3964 7.829378 AAAGTAAGTAAGCTCGACATAAAGG 57.171 36.000 0.00 0.00 0.00 3.11
3250 3965 6.770746 AGTAAGTAAGCTCGACATAAAGGA 57.229 37.500 0.00 0.00 0.00 3.36
3251 3966 7.166691 AGTAAGTAAGCTCGACATAAAGGAA 57.833 36.000 0.00 0.00 0.00 3.36
3252 3967 7.783042 AGTAAGTAAGCTCGACATAAAGGAAT 58.217 34.615 0.00 0.00 0.00 3.01
3253 3968 8.910944 AGTAAGTAAGCTCGACATAAAGGAATA 58.089 33.333 0.00 0.00 0.00 1.75
3254 3969 9.525409 GTAAGTAAGCTCGACATAAAGGAATAA 57.475 33.333 0.00 0.00 0.00 1.40
3256 3971 8.421673 AGTAAGCTCGACATAAAGGAATAAAC 57.578 34.615 0.00 0.00 0.00 2.01
3257 3972 6.679327 AAGCTCGACATAAAGGAATAAACC 57.321 37.500 0.00 0.00 0.00 3.27
3258 3973 4.809426 AGCTCGACATAAAGGAATAAACCG 59.191 41.667 0.00 0.00 34.73 4.44
3259 3974 4.807304 GCTCGACATAAAGGAATAAACCGA 59.193 41.667 0.00 0.00 34.73 4.69
3260 3975 5.050972 GCTCGACATAAAGGAATAAACCGAG 60.051 44.000 0.00 0.00 41.57 4.63
3261 3976 5.353938 TCGACATAAAGGAATAAACCGAGG 58.646 41.667 0.00 0.00 34.73 4.63
3262 3977 5.105228 TCGACATAAAGGAATAAACCGAGGT 60.105 40.000 0.00 0.00 34.73 3.85
3263 3978 5.006358 CGACATAAAGGAATAAACCGAGGTG 59.994 44.000 0.00 0.00 34.73 4.00
3264 3979 5.190677 ACATAAAGGAATAAACCGAGGTGG 58.809 41.667 0.00 0.00 46.41 4.61
3277 3992 4.682778 CCGAGGTGGTTGGATAGATTAA 57.317 45.455 0.00 0.00 0.00 1.40
3278 3993 5.031066 CCGAGGTGGTTGGATAGATTAAA 57.969 43.478 0.00 0.00 0.00 1.52
3279 3994 5.433526 CCGAGGTGGTTGGATAGATTAAAA 58.566 41.667 0.00 0.00 0.00 1.52
3280 3995 6.062095 CCGAGGTGGTTGGATAGATTAAAAT 58.938 40.000 0.00 0.00 0.00 1.82
3281 3996 6.546034 CCGAGGTGGTTGGATAGATTAAAATT 59.454 38.462 0.00 0.00 0.00 1.82
3282 3997 7.717875 CCGAGGTGGTTGGATAGATTAAAATTA 59.282 37.037 0.00 0.00 0.00 1.40
3283 3998 8.774586 CGAGGTGGTTGGATAGATTAAAATTAG 58.225 37.037 0.00 0.00 0.00 1.73
3284 3999 9.847224 GAGGTGGTTGGATAGATTAAAATTAGA 57.153 33.333 0.00 0.00 0.00 2.10
3285 4000 9.853177 AGGTGGTTGGATAGATTAAAATTAGAG 57.147 33.333 0.00 0.00 0.00 2.43
3286 4001 8.568794 GGTGGTTGGATAGATTAAAATTAGAGC 58.431 37.037 0.00 0.00 0.00 4.09
3287 4002 9.120538 GTGGTTGGATAGATTAAAATTAGAGCA 57.879 33.333 0.00 0.00 0.00 4.26
3288 4003 9.693739 TGGTTGGATAGATTAAAATTAGAGCAA 57.306 29.630 0.00 0.00 0.00 3.91
3297 4012 9.160496 AGATTAAAATTAGAGCAAGTCACTCAG 57.840 33.333 0.00 0.00 36.58 3.35
3298 4013 5.619625 AAAATTAGAGCAAGTCACTCAGC 57.380 39.130 0.00 0.00 36.58 4.26
3299 4014 2.354109 TTAGAGCAAGTCACTCAGCG 57.646 50.000 0.00 0.00 36.58 5.18
3300 4015 1.248486 TAGAGCAAGTCACTCAGCGT 58.752 50.000 0.00 0.00 36.58 5.07
3301 4016 0.319383 AGAGCAAGTCACTCAGCGTG 60.319 55.000 0.00 0.00 45.18 5.34
3302 4017 1.895280 GAGCAAGTCACTCAGCGTGC 61.895 60.000 0.00 0.00 43.46 5.34
3303 4018 2.959357 GCAAGTCACTCAGCGTGCC 61.959 63.158 0.00 0.00 43.46 5.01
3304 4019 1.595109 CAAGTCACTCAGCGTGCCA 60.595 57.895 0.00 0.00 43.46 4.92
3305 4020 0.952497 CAAGTCACTCAGCGTGCCAT 60.952 55.000 0.00 0.00 43.46 4.40
3306 4021 0.952497 AAGTCACTCAGCGTGCCATG 60.952 55.000 0.00 0.00 43.46 3.66
3307 4022 2.046988 TCACTCAGCGTGCCATGG 60.047 61.111 7.63 7.63 43.46 3.66
3308 4023 2.359107 CACTCAGCGTGCCATGGT 60.359 61.111 14.67 0.00 36.72 3.55
3309 4024 2.359107 ACTCAGCGTGCCATGGTG 60.359 61.111 14.67 9.80 34.14 4.17
3310 4025 2.359107 CTCAGCGTGCCATGGTGT 60.359 61.111 14.67 0.00 34.46 4.16
3311 4026 1.968017 CTCAGCGTGCCATGGTGTT 60.968 57.895 14.67 0.00 34.46 3.32
3312 4027 2.191354 CTCAGCGTGCCATGGTGTTG 62.191 60.000 14.67 11.84 34.46 3.33
3313 4028 2.112928 AGCGTGCCATGGTGTTGA 59.887 55.556 14.67 0.00 0.00 3.18
3314 4029 1.968017 AGCGTGCCATGGTGTTGAG 60.968 57.895 14.67 0.68 0.00 3.02
3315 4030 1.965930 GCGTGCCATGGTGTTGAGA 60.966 57.895 14.67 0.00 0.00 3.27
3316 4031 1.514678 GCGTGCCATGGTGTTGAGAA 61.515 55.000 14.67 0.00 0.00 2.87
3317 4032 1.167851 CGTGCCATGGTGTTGAGAAT 58.832 50.000 14.67 0.00 0.00 2.40
3318 4033 1.541147 CGTGCCATGGTGTTGAGAATT 59.459 47.619 14.67 0.00 0.00 2.17
3319 4034 2.030007 CGTGCCATGGTGTTGAGAATTT 60.030 45.455 14.67 0.00 0.00 1.82
3320 4035 3.578688 GTGCCATGGTGTTGAGAATTTC 58.421 45.455 14.67 0.00 0.00 2.17
3321 4036 3.256631 GTGCCATGGTGTTGAGAATTTCT 59.743 43.478 14.67 0.00 0.00 2.52
3322 4037 3.507233 TGCCATGGTGTTGAGAATTTCTC 59.493 43.478 17.76 17.76 43.65 2.87
3323 4038 3.760684 GCCATGGTGTTGAGAATTTCTCT 59.239 43.478 23.29 2.71 43.73 3.10
3324 4039 4.943705 GCCATGGTGTTGAGAATTTCTCTA 59.056 41.667 23.29 15.41 43.73 2.43
3325 4040 5.591877 GCCATGGTGTTGAGAATTTCTCTAT 59.408 40.000 23.29 8.64 43.73 1.98
3326 4041 6.238593 GCCATGGTGTTGAGAATTTCTCTATC 60.239 42.308 23.29 14.90 43.73 2.08
3327 4042 6.018425 CCATGGTGTTGAGAATTTCTCTATCG 60.018 42.308 23.29 7.33 43.73 2.92
3328 4043 6.037786 TGGTGTTGAGAATTTCTCTATCGT 57.962 37.500 23.29 0.00 43.73 3.73
3329 4044 6.464222 TGGTGTTGAGAATTTCTCTATCGTT 58.536 36.000 23.29 0.00 43.73 3.85
3330 4045 6.934645 TGGTGTTGAGAATTTCTCTATCGTTT 59.065 34.615 23.29 0.00 43.73 3.60
3331 4046 8.092068 TGGTGTTGAGAATTTCTCTATCGTTTA 58.908 33.333 23.29 2.05 43.73 2.01
3332 4047 8.596380 GGTGTTGAGAATTTCTCTATCGTTTAG 58.404 37.037 23.29 0.00 43.73 1.85
3333 4048 8.111224 GTGTTGAGAATTTCTCTATCGTTTAGC 58.889 37.037 23.29 6.90 43.73 3.09
3334 4049 7.277981 TGTTGAGAATTTCTCTATCGTTTAGCC 59.722 37.037 23.29 5.52 43.73 3.93
3335 4050 6.873997 TGAGAATTTCTCTATCGTTTAGCCA 58.126 36.000 23.29 0.71 43.73 4.75
3336 4051 7.327975 TGAGAATTTCTCTATCGTTTAGCCAA 58.672 34.615 23.29 0.00 43.73 4.52
3337 4052 7.492669 TGAGAATTTCTCTATCGTTTAGCCAAG 59.507 37.037 23.29 0.00 43.73 3.61
3338 4053 7.331791 AGAATTTCTCTATCGTTTAGCCAAGT 58.668 34.615 0.00 0.00 30.22 3.16
3339 4054 6.910536 ATTTCTCTATCGTTTAGCCAAGTG 57.089 37.500 0.00 0.00 0.00 3.16
3340 4055 4.386867 TCTCTATCGTTTAGCCAAGTGG 57.613 45.455 0.00 0.00 38.53 4.00
3341 4056 3.767673 TCTCTATCGTTTAGCCAAGTGGT 59.232 43.478 0.00 0.00 37.57 4.16
3342 4057 4.951715 TCTCTATCGTTTAGCCAAGTGGTA 59.048 41.667 0.00 0.00 37.57 3.25
3343 4058 5.002464 TCTATCGTTTAGCCAAGTGGTAC 57.998 43.478 0.00 0.00 37.57 3.34
3344 4059 3.975168 ATCGTTTAGCCAAGTGGTACT 57.025 42.857 0.00 0.00 37.57 2.73
3345 4060 3.034721 TCGTTTAGCCAAGTGGTACTG 57.965 47.619 0.00 0.00 37.57 2.74
3346 4061 1.463444 CGTTTAGCCAAGTGGTACTGC 59.537 52.381 0.00 0.00 37.57 4.40
3347 4062 2.500229 GTTTAGCCAAGTGGTACTGCA 58.500 47.619 0.00 0.00 37.57 4.41
3348 4063 3.081804 GTTTAGCCAAGTGGTACTGCAT 58.918 45.455 0.00 0.00 37.57 3.96
3349 4064 3.433306 TTAGCCAAGTGGTACTGCATT 57.567 42.857 0.00 0.00 37.57 3.56
3350 4065 4.561500 TTAGCCAAGTGGTACTGCATTA 57.438 40.909 0.00 0.00 37.57 1.90
3351 4066 2.991250 AGCCAAGTGGTACTGCATTAG 58.009 47.619 0.00 0.00 37.57 1.73
3352 4067 2.305927 AGCCAAGTGGTACTGCATTAGT 59.694 45.455 0.00 0.00 38.38 2.24
3353 4068 2.420022 GCCAAGTGGTACTGCATTAGTG 59.580 50.000 0.00 0.00 36.40 2.74
3354 4069 3.674997 CCAAGTGGTACTGCATTAGTGT 58.325 45.455 0.00 0.00 40.65 3.55
3355 4070 4.827692 CCAAGTGGTACTGCATTAGTGTA 58.172 43.478 0.00 0.00 40.65 2.90
3356 4071 5.428253 CCAAGTGGTACTGCATTAGTGTAT 58.572 41.667 0.00 0.00 40.65 2.29
3357 4072 5.523916 CCAAGTGGTACTGCATTAGTGTATC 59.476 44.000 0.00 0.00 40.65 2.24
3358 4073 5.932619 AGTGGTACTGCATTAGTGTATCA 57.067 39.130 0.00 0.00 40.65 2.15
3359 4074 5.661458 AGTGGTACTGCATTAGTGTATCAC 58.339 41.667 15.20 15.20 44.22 3.06
3360 4075 5.186992 AGTGGTACTGCATTAGTGTATCACA 59.813 40.000 21.62 5.54 45.48 3.58
3361 4076 5.872617 GTGGTACTGCATTAGTGTATCACAA 59.127 40.000 17.14 0.00 43.68 3.33
3362 4077 6.538742 GTGGTACTGCATTAGTGTATCACAAT 59.461 38.462 17.14 0.00 43.68 2.71
3363 4078 7.065803 GTGGTACTGCATTAGTGTATCACAATT 59.934 37.037 17.14 0.00 43.68 2.32
3364 4079 7.609918 TGGTACTGCATTAGTGTATCACAATTT 59.390 33.333 2.80 0.00 40.65 1.82
3365 4080 7.910162 GGTACTGCATTAGTGTATCACAATTTG 59.090 37.037 2.80 0.00 40.65 2.32
3366 4081 7.452880 ACTGCATTAGTGTATCACAATTTGT 57.547 32.000 0.00 0.00 38.49 2.83
3367 4082 7.885297 ACTGCATTAGTGTATCACAATTTGTT 58.115 30.769 0.00 0.00 38.49 2.83
3368 4083 8.023128 ACTGCATTAGTGTATCACAATTTGTTC 58.977 33.333 0.00 0.00 38.49 3.18
3369 4084 7.880105 TGCATTAGTGTATCACAATTTGTTCA 58.120 30.769 0.00 0.00 36.74 3.18
3370 4085 8.522003 TGCATTAGTGTATCACAATTTGTTCAT 58.478 29.630 0.00 0.00 36.74 2.57
3371 4086 9.013490 GCATTAGTGTATCACAATTTGTTCATC 57.987 33.333 0.00 0.00 36.74 2.92
3374 4089 7.750229 AGTGTATCACAATTTGTTCATCACT 57.250 32.000 15.27 15.27 36.74 3.41
3375 4090 8.846943 AGTGTATCACAATTTGTTCATCACTA 57.153 30.769 17.60 0.00 36.74 2.74
3376 4091 8.939929 AGTGTATCACAATTTGTTCATCACTAG 58.060 33.333 17.60 0.00 36.74 2.57
3377 4092 8.177663 GTGTATCACAATTTGTTCATCACTAGG 58.822 37.037 0.00 0.00 34.08 3.02
3378 4093 8.100164 TGTATCACAATTTGTTCATCACTAGGA 58.900 33.333 0.00 0.00 0.00 2.94
3379 4094 8.946085 GTATCACAATTTGTTCATCACTAGGAA 58.054 33.333 0.00 0.00 0.00 3.36
3380 4095 7.815840 TCACAATTTGTTCATCACTAGGAAA 57.184 32.000 0.00 0.00 0.00 3.13
3381 4096 7.648142 TCACAATTTGTTCATCACTAGGAAAC 58.352 34.615 0.00 0.00 0.00 2.78
3382 4097 7.284261 TCACAATTTGTTCATCACTAGGAAACA 59.716 33.333 0.00 0.00 0.00 2.83
3383 4098 8.084073 CACAATTTGTTCATCACTAGGAAACAT 58.916 33.333 0.00 0.00 0.00 2.71
3384 4099 8.084073 ACAATTTGTTCATCACTAGGAAACATG 58.916 33.333 0.00 0.00 0.00 3.21
3385 4100 5.627499 TTGTTCATCACTAGGAAACATGC 57.373 39.130 0.00 0.00 0.00 4.06
3386 4101 4.009675 TGTTCATCACTAGGAAACATGCC 58.990 43.478 0.00 0.00 0.00 4.40
3387 4102 3.281727 TCATCACTAGGAAACATGCCC 57.718 47.619 0.00 0.00 0.00 5.36
3388 4103 1.942657 CATCACTAGGAAACATGCCCG 59.057 52.381 0.00 0.00 0.00 6.13
3389 4104 0.981183 TCACTAGGAAACATGCCCGT 59.019 50.000 0.00 0.00 0.00 5.28
3390 4105 1.086696 CACTAGGAAACATGCCCGTG 58.913 55.000 0.00 0.00 0.00 4.94
3391 4106 0.676782 ACTAGGAAACATGCCCGTGC 60.677 55.000 0.00 0.00 38.26 5.34
3392 4107 1.705337 CTAGGAAACATGCCCGTGCG 61.705 60.000 0.00 0.00 41.78 5.34
3393 4108 2.457743 TAGGAAACATGCCCGTGCGT 62.458 55.000 0.00 0.00 41.78 5.24
3394 4109 2.642700 GAAACATGCCCGTGCGTT 59.357 55.556 0.00 0.00 41.78 4.84
3395 4110 1.729131 GAAACATGCCCGTGCGTTG 60.729 57.895 0.00 0.00 41.78 4.10
3396 4111 3.839642 AAACATGCCCGTGCGTTGC 62.840 57.895 0.00 0.00 41.78 4.17
3398 4113 4.340019 CATGCCCGTGCGTTGCAA 62.340 61.111 0.00 0.00 41.47 4.08
3399 4114 4.341502 ATGCCCGTGCGTTGCAAC 62.342 61.111 19.89 19.89 41.47 4.17
3429 4144 6.428385 AAAAAGAATAGGCTGTGAGAATCG 57.572 37.500 0.00 0.00 38.61 3.34
3430 4145 3.742433 AGAATAGGCTGTGAGAATCGG 57.258 47.619 0.00 0.00 38.61 4.18
3431 4146 2.366916 AGAATAGGCTGTGAGAATCGGG 59.633 50.000 0.00 0.00 38.61 5.14
3432 4147 2.088104 ATAGGCTGTGAGAATCGGGA 57.912 50.000 0.00 0.00 38.61 5.14
3433 4148 2.088104 TAGGCTGTGAGAATCGGGAT 57.912 50.000 0.00 0.00 38.61 3.85
3434 4149 0.467384 AGGCTGTGAGAATCGGGATG 59.533 55.000 0.00 0.00 38.61 3.51
3435 4150 0.179000 GGCTGTGAGAATCGGGATGT 59.821 55.000 0.00 0.00 38.61 3.06
3436 4151 1.293924 GCTGTGAGAATCGGGATGTG 58.706 55.000 0.00 0.00 38.61 3.21
3437 4152 1.293924 CTGTGAGAATCGGGATGTGC 58.706 55.000 0.00 0.00 38.61 4.57
3438 4153 0.460109 TGTGAGAATCGGGATGTGCG 60.460 55.000 0.00 0.00 38.61 5.34
3439 4154 0.179111 GTGAGAATCGGGATGTGCGA 60.179 55.000 0.00 0.00 38.61 5.10
3440 4155 0.534873 TGAGAATCGGGATGTGCGAA 59.465 50.000 0.00 0.00 38.61 4.70
3441 4156 1.138859 TGAGAATCGGGATGTGCGAAT 59.861 47.619 0.00 0.00 38.61 3.34
3442 4157 1.528586 GAGAATCGGGATGTGCGAATG 59.471 52.381 0.00 0.00 0.00 2.67
3443 4158 1.134401 AGAATCGGGATGTGCGAATGT 60.134 47.619 0.00 0.00 0.00 2.71
3444 4159 1.003545 GAATCGGGATGTGCGAATGTG 60.004 52.381 0.00 0.00 0.00 3.21
3445 4160 0.107703 ATCGGGATGTGCGAATGTGT 60.108 50.000 0.00 0.00 0.00 3.72
3446 4161 0.533032 TCGGGATGTGCGAATGTGTA 59.467 50.000 0.00 0.00 0.00 2.90
3447 4162 0.930310 CGGGATGTGCGAATGTGTAG 59.070 55.000 0.00 0.00 0.00 2.74
3448 4163 1.470805 CGGGATGTGCGAATGTGTAGA 60.471 52.381 0.00 0.00 0.00 2.59
3449 4164 2.627945 GGGATGTGCGAATGTGTAGAA 58.372 47.619 0.00 0.00 0.00 2.10
3450 4165 3.006940 GGGATGTGCGAATGTGTAGAAA 58.993 45.455 0.00 0.00 0.00 2.52
3451 4166 3.627577 GGGATGTGCGAATGTGTAGAAAT 59.372 43.478 0.00 0.00 0.00 2.17
3452 4167 4.496341 GGGATGTGCGAATGTGTAGAAATG 60.496 45.833 0.00 0.00 0.00 2.32
3453 4168 4.332543 GGATGTGCGAATGTGTAGAAATGA 59.667 41.667 0.00 0.00 0.00 2.57
3454 4169 5.163764 GGATGTGCGAATGTGTAGAAATGAA 60.164 40.000 0.00 0.00 0.00 2.57
3455 4170 5.681337 TGTGCGAATGTGTAGAAATGAAA 57.319 34.783 0.00 0.00 0.00 2.69
3456 4171 5.688823 TGTGCGAATGTGTAGAAATGAAAG 58.311 37.500 0.00 0.00 0.00 2.62
3457 4172 5.468409 TGTGCGAATGTGTAGAAATGAAAGA 59.532 36.000 0.00 0.00 0.00 2.52
3458 4173 6.017523 TGTGCGAATGTGTAGAAATGAAAGAA 60.018 34.615 0.00 0.00 0.00 2.52
3459 4174 6.303259 GTGCGAATGTGTAGAAATGAAAGAAC 59.697 38.462 0.00 0.00 0.00 3.01
3460 4175 6.204688 TGCGAATGTGTAGAAATGAAAGAACT 59.795 34.615 0.00 0.00 0.00 3.01
3461 4176 7.078228 GCGAATGTGTAGAAATGAAAGAACTT 58.922 34.615 0.00 0.00 0.00 2.66
3462 4177 7.591426 GCGAATGTGTAGAAATGAAAGAACTTT 59.409 33.333 0.00 0.00 35.14 2.66
3463 4178 9.450807 CGAATGTGTAGAAATGAAAGAACTTTT 57.549 29.630 1.33 0.00 32.11 2.27
3466 4181 9.956720 ATGTGTAGAAATGAAAGAACTTTTGAG 57.043 29.630 1.33 0.00 32.11 3.02
3467 4182 9.173021 TGTGTAGAAATGAAAGAACTTTTGAGA 57.827 29.630 1.33 0.00 32.11 3.27
3477 4192 9.927668 TGAAAGAACTTTTGAGAATTTTCAAGT 57.072 25.926 10.89 4.80 38.25 3.16
3493 4208 7.532682 TTTTCAAGTTAGAACATTTGTTGGC 57.467 32.000 0.00 0.00 38.56 4.52
3494 4209 5.195001 TCAAGTTAGAACATTTGTTGGCC 57.805 39.130 0.00 0.00 38.56 5.36
3495 4210 4.892934 TCAAGTTAGAACATTTGTTGGCCT 59.107 37.500 3.32 0.00 38.56 5.19
3496 4211 4.853924 AGTTAGAACATTTGTTGGCCTG 57.146 40.909 3.32 0.00 38.56 4.85
3497 4212 4.215109 AGTTAGAACATTTGTTGGCCTGT 58.785 39.130 3.32 0.00 38.56 4.00
3498 4213 4.278419 AGTTAGAACATTTGTTGGCCTGTC 59.722 41.667 3.32 0.00 38.56 3.51
3499 4214 2.949447 AGAACATTTGTTGGCCTGTCT 58.051 42.857 3.32 0.00 38.56 3.41
3500 4215 3.299503 AGAACATTTGTTGGCCTGTCTT 58.700 40.909 3.32 0.00 38.56 3.01
3501 4216 3.319122 AGAACATTTGTTGGCCTGTCTTC 59.681 43.478 3.32 0.00 38.56 2.87
3502 4217 2.665165 ACATTTGTTGGCCTGTCTTCA 58.335 42.857 3.32 0.00 0.00 3.02
3503 4218 2.362077 ACATTTGTTGGCCTGTCTTCAC 59.638 45.455 3.32 0.00 0.00 3.18
3504 4219 2.435372 TTTGTTGGCCTGTCTTCACT 57.565 45.000 3.32 0.00 0.00 3.41
3505 4220 1.679139 TTGTTGGCCTGTCTTCACTG 58.321 50.000 3.32 0.00 0.00 3.66
3506 4221 0.179020 TGTTGGCCTGTCTTCACTGG 60.179 55.000 3.32 0.00 43.12 4.00
3513 4228 1.000938 CCTGTCTTCACTGGCTTTTGC 60.001 52.381 0.00 0.00 46.64 3.68
3523 4238 4.404654 GCTTTTGCCAGGCGACCG 62.405 66.667 7.03 0.00 40.15 4.79
3524 4239 3.737172 CTTTTGCCAGGCGACCGG 61.737 66.667 7.03 0.00 0.00 5.28
3525 4240 4.572571 TTTTGCCAGGCGACCGGT 62.573 61.111 6.92 6.92 0.00 5.28
3530 4245 4.082523 CCAGGCGACCGGTGTGAT 62.083 66.667 14.63 0.00 0.00 3.06
3531 4246 2.717044 CCAGGCGACCGGTGTGATA 61.717 63.158 14.63 0.00 0.00 2.15
3532 4247 1.441729 CAGGCGACCGGTGTGATAT 59.558 57.895 14.63 0.00 0.00 1.63
3533 4248 0.597637 CAGGCGACCGGTGTGATATC 60.598 60.000 14.63 0.00 0.00 1.63
3534 4249 0.755698 AGGCGACCGGTGTGATATCT 60.756 55.000 14.63 0.00 0.00 1.98
3535 4250 0.956633 GGCGACCGGTGTGATATCTA 59.043 55.000 14.63 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 58 4.021368 GTCTACTCCTAGGCAACAACAGAA 60.021 45.833 2.96 0.00 41.41 3.02
194 200 5.279384 TGTGTCGTCTAAGTCTTTCTTGTC 58.721 41.667 0.00 0.00 37.56 3.18
227 233 3.491276 CCAATTCTGTGAAACTTGCTGCA 60.491 43.478 0.00 0.00 38.04 4.41
258 264 8.109705 TGCATGTACTGAACAAACAAATCTAT 57.890 30.769 0.00 0.00 42.70 1.98
259 265 7.503521 TGCATGTACTGAACAAACAAATCTA 57.496 32.000 0.00 0.00 42.70 1.98
342 366 5.065474 TCGTAAGAGGCCAAATTATTTTCCG 59.935 40.000 5.01 0.81 45.01 4.30
360 384 5.971202 GCCCAATTGTGTCAAATATCGTAAG 59.029 40.000 4.43 0.00 0.00 2.34
373 397 4.634199 CTCATTTTTCAGCCCAATTGTGT 58.366 39.130 4.43 0.00 0.00 3.72
398 422 1.221466 TTCGCGGAACTGCAGACAAG 61.221 55.000 23.35 10.04 34.15 3.16
401 425 1.291877 ATGTTCGCGGAACTGCAGAC 61.292 55.000 23.35 13.63 42.39 3.51
465 489 4.670896 TGCATGCATGAGCTACTTACTA 57.329 40.909 30.64 0.00 42.74 1.82
490 703 7.201444 GCTTATTATGGTCCGATTAAGTGATCG 60.201 40.741 0.00 0.00 46.33 3.69
544 757 1.253100 TGATTTTTCAACTCCCGGCC 58.747 50.000 0.00 0.00 0.00 6.13
545 758 3.592898 ATTGATTTTTCAACTCCCGGC 57.407 42.857 0.00 0.00 31.89 6.13
549 762 5.852827 TGGTGGAATTGATTTTTCAACTCC 58.147 37.500 8.79 8.79 43.84 3.85
606 845 5.265989 TGGTGGAATTGATACCCCTAAAAC 58.734 41.667 0.00 0.00 33.51 2.43
640 880 1.410083 GGCCCATTGCAGATGTAGGAA 60.410 52.381 0.00 0.00 43.89 3.36
905 1146 2.716217 GAGGGTTTGGAGATGGTTCTG 58.284 52.381 0.00 0.00 30.30 3.02
1422 1669 3.342377 AACCTTCTAAGAAGAGGCTGC 57.658 47.619 0.00 0.00 31.96 5.25
1432 1679 5.227908 TCTACGCTTGTCAAACCTTCTAAG 58.772 41.667 0.00 0.00 0.00 2.18
1435 1682 3.746045 TCTACGCTTGTCAAACCTTCT 57.254 42.857 0.00 0.00 0.00 2.85
1448 1695 0.179089 CAAGCAGGCAGATCTACGCT 60.179 55.000 0.00 0.00 0.00 5.07
1476 1723 5.357257 TCGCCATTAAATCCTCTGTAAGAC 58.643 41.667 0.00 0.00 38.67 3.01
1477 1724 5.607939 TCGCCATTAAATCCTCTGTAAGA 57.392 39.130 0.00 0.00 43.69 2.10
1479 1726 6.929049 CACTATCGCCATTAAATCCTCTGTAA 59.071 38.462 0.00 0.00 0.00 2.41
1567 1815 9.661563 TCAACTCGGATTACTACAACAATAATT 57.338 29.630 0.00 0.00 0.00 1.40
1573 1821 8.002984 TCATATCAACTCGGATTACTACAACA 57.997 34.615 0.00 0.00 0.00 3.33
1619 1867 5.694910 CGCCTTATCTACCATTTGAACGTAT 59.305 40.000 0.00 0.00 0.00 3.06
1620 1868 5.045215 CGCCTTATCTACCATTTGAACGTA 58.955 41.667 0.00 0.00 0.00 3.57
1621 1869 3.869246 CGCCTTATCTACCATTTGAACGT 59.131 43.478 0.00 0.00 0.00 3.99
1622 1870 4.116961 TCGCCTTATCTACCATTTGAACG 58.883 43.478 0.00 0.00 0.00 3.95
1623 1871 4.511826 CCTCGCCTTATCTACCATTTGAAC 59.488 45.833 0.00 0.00 0.00 3.18
1624 1872 4.407621 TCCTCGCCTTATCTACCATTTGAA 59.592 41.667 0.00 0.00 0.00 2.69
1625 1873 3.964688 TCCTCGCCTTATCTACCATTTGA 59.035 43.478 0.00 0.00 0.00 2.69
1648 1896 1.678101 GCACAACTTCAGCTTCAACCT 59.322 47.619 0.00 0.00 0.00 3.50
1667 1915 4.285807 TGATGTGTACAACAAACACTGC 57.714 40.909 0.00 1.31 45.95 4.40
1694 1944 4.559300 GCAAGCAGCTAAAACCATTTGAGA 60.559 41.667 0.00 0.00 41.15 3.27
1720 1970 7.546358 TCCAAATTTAGTATTCCATGCAACAG 58.454 34.615 0.00 0.00 0.00 3.16
1721 1971 7.473735 TCCAAATTTAGTATTCCATGCAACA 57.526 32.000 0.00 0.00 0.00 3.33
1722 1972 8.947055 ATTCCAAATTTAGTATTCCATGCAAC 57.053 30.769 0.00 0.00 0.00 4.17
1746 1996 6.558488 TTATAAAGCAGGGGCAATCAAAAT 57.442 33.333 0.00 0.00 44.61 1.82
1747 1997 6.558488 ATTATAAAGCAGGGGCAATCAAAA 57.442 33.333 0.00 0.00 44.61 2.44
1875 2294 4.605640 TCTTTTTGGGCAGAAATCCTTG 57.394 40.909 0.00 0.00 0.00 3.61
1876 2295 5.830799 AATCTTTTTGGGCAGAAATCCTT 57.169 34.783 0.00 0.00 0.00 3.36
1902 2349 3.973973 AGGGCCACAGCAGTATAGATTAA 59.026 43.478 6.18 0.00 42.56 1.40
1930 2377 8.791675 TCAGAGAAGAGATAACATGCTAGTATG 58.208 37.037 18.12 18.12 0.00 2.39
1931 2378 8.932434 TCAGAGAAGAGATAACATGCTAGTAT 57.068 34.615 0.00 0.00 0.00 2.12
1932 2379 8.753497 TTCAGAGAAGAGATAACATGCTAGTA 57.247 34.615 0.00 0.00 0.00 1.82
2051 2715 5.741388 ACCACAAGCAAATCGAGATATTC 57.259 39.130 0.00 0.00 0.00 1.75
2059 2723 3.627577 AGCCTATTACCACAAGCAAATCG 59.372 43.478 0.00 0.00 0.00 3.34
2068 2732 5.864418 AATCGTTCTAGCCTATTACCACA 57.136 39.130 0.00 0.00 0.00 4.17
2069 2733 5.050295 GCAAATCGTTCTAGCCTATTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
2087 2751 8.325997 GCACTATTGATTTCAAAGATGCAAATC 58.674 33.333 15.45 0.00 39.55 2.17
2088 2752 8.038944 AGCACTATTGATTTCAAAGATGCAAAT 58.961 29.630 19.44 0.00 39.55 2.32
2134 2798 6.003326 TGAACAAAAGCATCAGGATAAGTGA 58.997 36.000 0.00 0.00 0.00 3.41
2135 2799 6.258230 TGAACAAAAGCATCAGGATAAGTG 57.742 37.500 0.00 0.00 0.00 3.16
2145 2809 2.064014 GCAAGGCTGAACAAAAGCATC 58.936 47.619 0.00 0.00 42.69 3.91
2152 2816 4.202233 TGAATGAAATGCAAGGCTGAACAA 60.202 37.500 0.00 0.00 0.00 2.83
2156 2820 4.020928 ACAATGAATGAAATGCAAGGCTGA 60.021 37.500 0.00 0.00 33.83 4.26
2161 2825 7.811236 ACTAGAACACAATGAATGAAATGCAAG 59.189 33.333 0.00 0.00 33.83 4.01
2164 2828 6.529125 CCACTAGAACACAATGAATGAAATGC 59.471 38.462 0.00 0.00 0.00 3.56
2217 2881 7.540474 TTAGTCCTGAACTTGACTCTACATT 57.460 36.000 0.00 0.00 40.84 2.71
2867 3543 9.209175 ACAAGATGTAGATCAAGAAAGTAACAC 57.791 33.333 2.30 0.00 0.00 3.32
2868 3544 9.778741 AACAAGATGTAGATCAAGAAAGTAACA 57.221 29.630 2.30 0.00 0.00 2.41
3018 3724 3.935203 CGTGTAGTCAAAAGCATCAGGAT 59.065 43.478 0.00 0.00 0.00 3.24
3032 3738 0.713883 CAACATGCCGACGTGTAGTC 59.286 55.000 0.00 0.00 45.43 2.59
3033 3739 0.669318 CCAACATGCCGACGTGTAGT 60.669 55.000 0.00 0.00 45.43 2.73
3034 3740 0.389296 TCCAACATGCCGACGTGTAG 60.389 55.000 0.00 0.00 45.43 2.74
3039 3745 0.719465 GTAGTTCCAACATGCCGACG 59.281 55.000 0.00 0.00 0.00 5.12
3048 3763 7.550551 TCATCATCTCATGAAAGTAGTTCCAAC 59.449 37.037 0.00 0.00 43.50 3.77
3057 3772 7.763528 GTCAACTAGTCATCATCTCATGAAAGT 59.236 37.037 0.00 0.00 43.50 2.66
3067 3782 5.452077 GGTGGGTAGTCAACTAGTCATCATC 60.452 48.000 0.00 0.00 0.00 2.92
3075 3790 3.513912 TCATGTGGTGGGTAGTCAACTAG 59.486 47.826 0.00 0.00 0.00 2.57
3094 3809 2.672478 GCGCGATGCCTATCTAGTTCAT 60.672 50.000 12.10 0.00 37.76 2.57
3133 3848 1.243902 TTGGATTTCACGGCTCAACC 58.756 50.000 0.00 0.00 0.00 3.77
3134 3849 3.049912 GTTTTGGATTTCACGGCTCAAC 58.950 45.455 0.00 0.00 0.00 3.18
3135 3850 2.690497 TGTTTTGGATTTCACGGCTCAA 59.310 40.909 0.00 0.00 0.00 3.02
3136 3851 2.302260 TGTTTTGGATTTCACGGCTCA 58.698 42.857 0.00 0.00 0.00 4.26
3137 3852 3.363341 TTGTTTTGGATTTCACGGCTC 57.637 42.857 0.00 0.00 0.00 4.70
3138 3853 4.279671 TGTATTGTTTTGGATTTCACGGCT 59.720 37.500 0.00 0.00 0.00 5.52
3139 3854 4.551388 TGTATTGTTTTGGATTTCACGGC 58.449 39.130 0.00 0.00 0.00 5.68
3140 3855 8.026607 ACTATTGTATTGTTTTGGATTTCACGG 58.973 33.333 0.00 0.00 0.00 4.94
3141 3856 8.849490 CACTATTGTATTGTTTTGGATTTCACG 58.151 33.333 0.00 0.00 0.00 4.35
3142 3857 8.647226 GCACTATTGTATTGTTTTGGATTTCAC 58.353 33.333 0.00 0.00 0.00 3.18
3143 3858 8.363390 TGCACTATTGTATTGTTTTGGATTTCA 58.637 29.630 0.00 0.00 0.00 2.69
3144 3859 8.755696 TGCACTATTGTATTGTTTTGGATTTC 57.244 30.769 0.00 0.00 0.00 2.17
3145 3860 9.153721 CATGCACTATTGTATTGTTTTGGATTT 57.846 29.630 0.00 0.00 0.00 2.17
3146 3861 7.765360 CCATGCACTATTGTATTGTTTTGGATT 59.235 33.333 0.00 0.00 0.00 3.01
3147 3862 7.093377 ACCATGCACTATTGTATTGTTTTGGAT 60.093 33.333 0.00 0.00 0.00 3.41
3148 3863 6.210385 ACCATGCACTATTGTATTGTTTTGGA 59.790 34.615 0.00 0.00 0.00 3.53
3149 3864 6.397272 ACCATGCACTATTGTATTGTTTTGG 58.603 36.000 0.00 0.00 0.00 3.28
3150 3865 7.598118 TGAACCATGCACTATTGTATTGTTTTG 59.402 33.333 0.00 0.00 34.94 2.44
3151 3866 7.665690 TGAACCATGCACTATTGTATTGTTTT 58.334 30.769 0.00 0.00 34.94 2.43
3152 3867 7.039784 ACTGAACCATGCACTATTGTATTGTTT 60.040 33.333 0.00 0.00 34.94 2.83
3153 3868 6.434028 ACTGAACCATGCACTATTGTATTGTT 59.566 34.615 0.00 1.41 36.70 2.83
3154 3869 5.945784 ACTGAACCATGCACTATTGTATTGT 59.054 36.000 0.00 0.00 0.00 2.71
3155 3870 6.260377 CACTGAACCATGCACTATTGTATTG 58.740 40.000 0.00 0.00 0.00 1.90
3156 3871 5.163622 GCACTGAACCATGCACTATTGTATT 60.164 40.000 0.00 0.00 41.65 1.89
3157 3872 4.336433 GCACTGAACCATGCACTATTGTAT 59.664 41.667 0.00 0.00 41.65 2.29
3158 3873 3.689161 GCACTGAACCATGCACTATTGTA 59.311 43.478 0.00 0.00 41.65 2.41
3159 3874 2.489329 GCACTGAACCATGCACTATTGT 59.511 45.455 0.00 0.00 41.65 2.71
3160 3875 2.159338 GGCACTGAACCATGCACTATTG 60.159 50.000 0.00 0.00 43.93 1.90
3161 3876 2.094675 GGCACTGAACCATGCACTATT 58.905 47.619 0.00 0.00 43.93 1.73
3162 3877 1.755179 GGCACTGAACCATGCACTAT 58.245 50.000 0.00 0.00 43.93 2.12
3163 3878 0.673333 CGGCACTGAACCATGCACTA 60.673 55.000 0.00 0.00 43.93 2.74
3164 3879 1.968017 CGGCACTGAACCATGCACT 60.968 57.895 0.00 0.00 43.93 4.40
3165 3880 1.514678 TTCGGCACTGAACCATGCAC 61.515 55.000 0.00 0.00 43.93 4.57
3166 3881 0.821301 TTTCGGCACTGAACCATGCA 60.821 50.000 0.00 0.00 43.93 3.96
3167 3882 0.313672 TTTTCGGCACTGAACCATGC 59.686 50.000 0.00 0.00 41.29 4.06
3168 3883 4.433186 TTATTTTCGGCACTGAACCATG 57.567 40.909 0.00 0.00 0.00 3.66
3169 3884 5.184864 TGAATTATTTTCGGCACTGAACCAT 59.815 36.000 0.00 0.00 0.00 3.55
3170 3885 4.520874 TGAATTATTTTCGGCACTGAACCA 59.479 37.500 0.00 0.00 0.00 3.67
3171 3886 5.054390 TGAATTATTTTCGGCACTGAACC 57.946 39.130 0.00 0.00 0.00 3.62
3172 3887 6.321717 TGATGAATTATTTTCGGCACTGAAC 58.678 36.000 0.00 0.00 0.00 3.18
3173 3888 6.507958 TGATGAATTATTTTCGGCACTGAA 57.492 33.333 0.00 0.00 0.00 3.02
3174 3889 6.507958 TTGATGAATTATTTTCGGCACTGA 57.492 33.333 0.00 0.00 0.00 3.41
3175 3890 7.760131 ATTTGATGAATTATTTTCGGCACTG 57.240 32.000 0.00 0.00 0.00 3.66
3217 3932 9.431887 TGTCGAGCTTACTTACTTTATTTGAAT 57.568 29.630 0.00 0.00 0.00 2.57
3218 3933 8.821147 TGTCGAGCTTACTTACTTTATTTGAA 57.179 30.769 0.00 0.00 0.00 2.69
3219 3934 8.997621 ATGTCGAGCTTACTTACTTTATTTGA 57.002 30.769 0.00 0.00 0.00 2.69
3223 3938 9.530633 CCTTTATGTCGAGCTTACTTACTTTAT 57.469 33.333 0.00 0.00 0.00 1.40
3224 3939 8.742777 TCCTTTATGTCGAGCTTACTTACTTTA 58.257 33.333 0.00 0.00 0.00 1.85
3225 3940 7.609056 TCCTTTATGTCGAGCTTACTTACTTT 58.391 34.615 0.00 0.00 0.00 2.66
3226 3941 7.166691 TCCTTTATGTCGAGCTTACTTACTT 57.833 36.000 0.00 0.00 0.00 2.24
3227 3942 6.770746 TCCTTTATGTCGAGCTTACTTACT 57.229 37.500 0.00 0.00 0.00 2.24
3228 3943 9.525409 TTATTCCTTTATGTCGAGCTTACTTAC 57.475 33.333 0.00 0.00 0.00 2.34
3230 3945 8.880750 GTTTATTCCTTTATGTCGAGCTTACTT 58.119 33.333 0.00 0.00 0.00 2.24
3231 3946 7.494952 GGTTTATTCCTTTATGTCGAGCTTACT 59.505 37.037 0.00 0.00 0.00 2.24
3232 3947 7.516312 CGGTTTATTCCTTTATGTCGAGCTTAC 60.516 40.741 0.00 0.00 0.00 2.34
3233 3948 6.477688 CGGTTTATTCCTTTATGTCGAGCTTA 59.522 38.462 0.00 0.00 0.00 3.09
3234 3949 5.293569 CGGTTTATTCCTTTATGTCGAGCTT 59.706 40.000 0.00 0.00 0.00 3.74
3235 3950 4.809426 CGGTTTATTCCTTTATGTCGAGCT 59.191 41.667 0.00 0.00 0.00 4.09
3236 3951 4.807304 TCGGTTTATTCCTTTATGTCGAGC 59.193 41.667 0.00 0.00 0.00 5.03
3237 3952 5.462398 CCTCGGTTTATTCCTTTATGTCGAG 59.538 44.000 0.00 0.00 39.69 4.04
3238 3953 5.105228 ACCTCGGTTTATTCCTTTATGTCGA 60.105 40.000 0.00 0.00 0.00 4.20
3239 3954 5.006358 CACCTCGGTTTATTCCTTTATGTCG 59.994 44.000 0.00 0.00 0.00 4.35
3240 3955 5.296035 CCACCTCGGTTTATTCCTTTATGTC 59.704 44.000 0.00 0.00 0.00 3.06
3241 3956 5.190677 CCACCTCGGTTTATTCCTTTATGT 58.809 41.667 0.00 0.00 0.00 2.29
3242 3957 5.751243 CCACCTCGGTTTATTCCTTTATG 57.249 43.478 0.00 0.00 0.00 1.90
3256 3971 4.682778 TTAATCTATCCAACCACCTCGG 57.317 45.455 0.00 0.00 42.50 4.63
3257 3972 7.568199 AATTTTAATCTATCCAACCACCTCG 57.432 36.000 0.00 0.00 0.00 4.63
3258 3973 9.847224 TCTAATTTTAATCTATCCAACCACCTC 57.153 33.333 0.00 0.00 0.00 3.85
3259 3974 9.853177 CTCTAATTTTAATCTATCCAACCACCT 57.147 33.333 0.00 0.00 0.00 4.00
3260 3975 8.568794 GCTCTAATTTTAATCTATCCAACCACC 58.431 37.037 0.00 0.00 0.00 4.61
3261 3976 9.120538 TGCTCTAATTTTAATCTATCCAACCAC 57.879 33.333 0.00 0.00 0.00 4.16
3262 3977 9.693739 TTGCTCTAATTTTAATCTATCCAACCA 57.306 29.630 0.00 0.00 0.00 3.67
3271 3986 9.160496 CTGAGTGACTTGCTCTAATTTTAATCT 57.840 33.333 0.00 0.00 34.30 2.40
3272 3987 7.907563 GCTGAGTGACTTGCTCTAATTTTAATC 59.092 37.037 4.66 0.00 34.30 1.75
3273 3988 7.413438 CGCTGAGTGACTTGCTCTAATTTTAAT 60.413 37.037 9.20 0.00 34.30 1.40
3274 3989 6.128553 CGCTGAGTGACTTGCTCTAATTTTAA 60.129 38.462 9.20 0.00 34.30 1.52
3275 3990 5.348724 CGCTGAGTGACTTGCTCTAATTTTA 59.651 40.000 9.20 0.00 34.30 1.52
3276 3991 4.153117 CGCTGAGTGACTTGCTCTAATTTT 59.847 41.667 9.20 0.00 34.30 1.82
3277 3992 3.681897 CGCTGAGTGACTTGCTCTAATTT 59.318 43.478 9.20 0.00 34.30 1.82
3278 3993 3.257393 CGCTGAGTGACTTGCTCTAATT 58.743 45.455 9.20 0.00 34.30 1.40
3279 3994 2.232452 ACGCTGAGTGACTTGCTCTAAT 59.768 45.455 0.00 0.00 34.30 1.73
3280 3995 1.613925 ACGCTGAGTGACTTGCTCTAA 59.386 47.619 0.00 0.00 34.30 2.10
3281 3996 1.248486 ACGCTGAGTGACTTGCTCTA 58.752 50.000 0.00 0.00 34.30 2.43
3282 3997 2.045280 ACGCTGAGTGACTTGCTCT 58.955 52.632 0.00 0.00 34.30 4.09
3283 3998 4.663444 ACGCTGAGTGACTTGCTC 57.337 55.556 0.00 0.00 0.00 4.26
3292 4007 2.359107 CACCATGGCACGCTGAGT 60.359 61.111 13.04 0.00 0.00 3.41
3293 4008 1.968017 AACACCATGGCACGCTGAG 60.968 57.895 13.04 0.00 0.00 3.35
3294 4009 2.112928 AACACCATGGCACGCTGA 59.887 55.556 13.04 0.00 0.00 4.26
3295 4010 2.191354 CTCAACACCATGGCACGCTG 62.191 60.000 13.04 4.49 0.00 5.18
3296 4011 1.968017 CTCAACACCATGGCACGCT 60.968 57.895 13.04 0.00 0.00 5.07
3297 4012 1.514678 TTCTCAACACCATGGCACGC 61.515 55.000 13.04 0.00 0.00 5.34
3298 4013 1.167851 ATTCTCAACACCATGGCACG 58.832 50.000 13.04 2.89 0.00 5.34
3299 4014 3.256631 AGAAATTCTCAACACCATGGCAC 59.743 43.478 13.04 0.00 0.00 5.01
3300 4015 3.499338 AGAAATTCTCAACACCATGGCA 58.501 40.909 13.04 0.00 0.00 4.92
3301 4016 3.760684 AGAGAAATTCTCAACACCATGGC 59.239 43.478 23.20 0.00 45.73 4.40
3302 4017 6.018425 CGATAGAGAAATTCTCAACACCATGG 60.018 42.308 23.20 11.19 45.73 3.66
3303 4018 6.536582 ACGATAGAGAAATTCTCAACACCATG 59.463 38.462 23.20 8.20 45.73 3.66
3304 4019 6.644347 ACGATAGAGAAATTCTCAACACCAT 58.356 36.000 23.20 5.03 45.73 3.55
3305 4020 6.037786 ACGATAGAGAAATTCTCAACACCA 57.962 37.500 23.20 3.47 45.73 4.17
3306 4021 6.969828 AACGATAGAGAAATTCTCAACACC 57.030 37.500 23.20 7.93 45.73 4.16
3307 4022 8.111224 GCTAAACGATAGAGAAATTCTCAACAC 58.889 37.037 23.20 11.20 45.73 3.32
3308 4023 7.277981 GGCTAAACGATAGAGAAATTCTCAACA 59.722 37.037 23.20 9.58 45.73 3.33
3309 4024 7.277981 TGGCTAAACGATAGAGAAATTCTCAAC 59.722 37.037 23.20 13.01 45.73 3.18
3310 4025 7.327975 TGGCTAAACGATAGAGAAATTCTCAA 58.672 34.615 23.20 0.03 45.73 3.02
3311 4026 6.873997 TGGCTAAACGATAGAGAAATTCTCA 58.126 36.000 23.20 10.84 45.73 3.27
3312 4027 7.492994 ACTTGGCTAAACGATAGAGAAATTCTC 59.507 37.037 14.77 14.77 43.70 2.87
3313 4028 7.278868 CACTTGGCTAAACGATAGAGAAATTCT 59.721 37.037 0.00 0.00 40.06 2.40
3314 4029 7.402640 CACTTGGCTAAACGATAGAGAAATTC 58.597 38.462 0.00 0.00 41.38 2.17
3315 4030 6.316390 CCACTTGGCTAAACGATAGAGAAATT 59.684 38.462 0.00 0.00 41.38 1.82
3316 4031 5.817816 CCACTTGGCTAAACGATAGAGAAAT 59.182 40.000 0.00 0.00 41.38 2.17
3317 4032 5.175859 CCACTTGGCTAAACGATAGAGAAA 58.824 41.667 0.00 0.00 41.38 2.52
3318 4033 4.222145 ACCACTTGGCTAAACGATAGAGAA 59.778 41.667 0.00 0.00 39.32 2.87
3319 4034 3.767673 ACCACTTGGCTAAACGATAGAGA 59.232 43.478 0.00 0.00 39.32 3.10
3320 4035 4.124851 ACCACTTGGCTAAACGATAGAG 57.875 45.455 0.00 0.00 39.32 2.43
3321 4036 4.708421 AGTACCACTTGGCTAAACGATAGA 59.292 41.667 0.00 0.00 39.32 1.98
3322 4037 4.804139 CAGTACCACTTGGCTAAACGATAG 59.196 45.833 0.00 0.00 39.32 2.08
3323 4038 4.751060 CAGTACCACTTGGCTAAACGATA 58.249 43.478 0.00 0.00 39.32 2.92
3324 4039 3.596214 CAGTACCACTTGGCTAAACGAT 58.404 45.455 0.00 0.00 39.32 3.73
3325 4040 2.868839 GCAGTACCACTTGGCTAAACGA 60.869 50.000 0.00 0.00 39.32 3.85
3326 4041 1.463444 GCAGTACCACTTGGCTAAACG 59.537 52.381 0.00 0.00 39.32 3.60
3327 4042 2.500229 TGCAGTACCACTTGGCTAAAC 58.500 47.619 0.00 0.00 39.32 2.01
3328 4043 2.940994 TGCAGTACCACTTGGCTAAA 57.059 45.000 0.00 0.00 39.32 1.85
3329 4044 3.433306 AATGCAGTACCACTTGGCTAA 57.567 42.857 0.00 0.00 39.32 3.09
3330 4045 3.517901 ACTAATGCAGTACCACTTGGCTA 59.482 43.478 0.00 0.00 39.32 3.93
3331 4046 2.305927 ACTAATGCAGTACCACTTGGCT 59.694 45.455 0.00 0.00 39.32 4.75
3332 4047 2.420022 CACTAATGCAGTACCACTTGGC 59.580 50.000 0.00 0.00 34.95 4.52
3333 4048 3.674997 ACACTAATGCAGTACCACTTGG 58.325 45.455 0.00 0.00 34.98 3.61
3334 4049 6.036083 GTGATACACTAATGCAGTACCACTTG 59.964 42.308 1.28 0.00 34.98 3.16
3335 4050 6.106673 GTGATACACTAATGCAGTACCACTT 58.893 40.000 1.28 0.00 34.98 3.16
3336 4051 5.186992 TGTGATACACTAATGCAGTACCACT 59.813 40.000 8.53 0.00 34.98 4.00
3337 4052 5.416083 TGTGATACACTAATGCAGTACCAC 58.584 41.667 1.49 1.49 34.98 4.16
3338 4053 5.669164 TGTGATACACTAATGCAGTACCA 57.331 39.130 0.00 0.00 34.98 3.25
3339 4054 7.553881 AATTGTGATACACTAATGCAGTACC 57.446 36.000 0.00 0.00 34.98 3.34
3340 4055 8.450964 ACAAATTGTGATACACTAATGCAGTAC 58.549 33.333 0.00 0.00 34.98 2.73
3341 4056 8.560355 ACAAATTGTGATACACTAATGCAGTA 57.440 30.769 0.00 0.00 34.98 2.74
3342 4057 7.452880 ACAAATTGTGATACACTAATGCAGT 57.547 32.000 0.00 0.00 38.32 4.40
3343 4058 8.022550 TGAACAAATTGTGATACACTAATGCAG 58.977 33.333 0.00 0.00 35.11 4.41
3344 4059 7.880105 TGAACAAATTGTGATACACTAATGCA 58.120 30.769 0.00 0.00 35.11 3.96
3345 4060 8.915871 ATGAACAAATTGTGATACACTAATGC 57.084 30.769 0.00 0.00 35.11 3.56
3348 4063 9.283768 AGTGATGAACAAATTGTGATACACTAA 57.716 29.630 19.23 0.00 35.11 2.24
3349 4064 8.846943 AGTGATGAACAAATTGTGATACACTA 57.153 30.769 19.23 0.00 35.11 2.74
3350 4065 7.750229 AGTGATGAACAAATTGTGATACACT 57.250 32.000 16.83 16.83 35.11 3.55
3351 4066 8.177663 CCTAGTGATGAACAAATTGTGATACAC 58.822 37.037 0.00 8.66 34.56 2.90
3352 4067 8.100164 TCCTAGTGATGAACAAATTGTGATACA 58.900 33.333 0.00 0.00 0.00 2.29
3353 4068 8.492673 TCCTAGTGATGAACAAATTGTGATAC 57.507 34.615 0.00 0.00 0.00 2.24
3354 4069 9.513906 TTTCCTAGTGATGAACAAATTGTGATA 57.486 29.630 0.00 0.00 0.00 2.15
3355 4070 8.299570 GTTTCCTAGTGATGAACAAATTGTGAT 58.700 33.333 0.00 0.00 0.00 3.06
3356 4071 7.284261 TGTTTCCTAGTGATGAACAAATTGTGA 59.716 33.333 0.00 0.00 0.00 3.58
3357 4072 7.424803 TGTTTCCTAGTGATGAACAAATTGTG 58.575 34.615 0.00 0.00 0.00 3.33
3358 4073 7.581213 TGTTTCCTAGTGATGAACAAATTGT 57.419 32.000 0.00 0.00 0.00 2.71
3359 4074 7.062605 GCATGTTTCCTAGTGATGAACAAATTG 59.937 37.037 0.00 0.00 0.00 2.32
3360 4075 7.092716 GCATGTTTCCTAGTGATGAACAAATT 58.907 34.615 0.00 0.00 0.00 1.82
3361 4076 6.350445 GGCATGTTTCCTAGTGATGAACAAAT 60.350 38.462 0.00 0.00 0.00 2.32
3362 4077 5.048083 GGCATGTTTCCTAGTGATGAACAAA 60.048 40.000 0.00 0.00 0.00 2.83
3363 4078 4.458989 GGCATGTTTCCTAGTGATGAACAA 59.541 41.667 0.00 0.00 0.00 2.83
3364 4079 4.009675 GGCATGTTTCCTAGTGATGAACA 58.990 43.478 0.00 0.00 0.00 3.18
3365 4080 3.378427 GGGCATGTTTCCTAGTGATGAAC 59.622 47.826 0.00 0.00 0.00 3.18
3366 4081 3.620488 GGGCATGTTTCCTAGTGATGAA 58.380 45.455 0.00 0.00 0.00 2.57
3367 4082 2.419990 CGGGCATGTTTCCTAGTGATGA 60.420 50.000 0.00 0.00 0.00 2.92
3368 4083 1.942657 CGGGCATGTTTCCTAGTGATG 59.057 52.381 0.00 0.00 0.00 3.07
3369 4084 1.559682 ACGGGCATGTTTCCTAGTGAT 59.440 47.619 0.00 0.00 0.00 3.06
3370 4085 0.981183 ACGGGCATGTTTCCTAGTGA 59.019 50.000 0.00 0.00 0.00 3.41
3371 4086 1.086696 CACGGGCATGTTTCCTAGTG 58.913 55.000 0.00 0.00 0.00 2.74
3372 4087 0.676782 GCACGGGCATGTTTCCTAGT 60.677 55.000 3.77 0.00 40.72 2.57
3373 4088 1.705337 CGCACGGGCATGTTTCCTAG 61.705 60.000 11.77 0.00 41.24 3.02
3374 4089 1.743623 CGCACGGGCATGTTTCCTA 60.744 57.895 11.77 0.00 41.24 2.94
3375 4090 3.055719 CGCACGGGCATGTTTCCT 61.056 61.111 11.77 0.00 41.24 3.36
3376 4091 2.914908 AACGCACGGGCATGTTTCC 61.915 57.895 11.77 0.00 41.24 3.13
3377 4092 1.729131 CAACGCACGGGCATGTTTC 60.729 57.895 11.77 0.00 41.24 2.78
3378 4093 2.334653 CAACGCACGGGCATGTTT 59.665 55.556 11.77 0.00 41.24 2.83
3379 4094 4.341502 GCAACGCACGGGCATGTT 62.342 61.111 11.77 3.22 41.24 2.71
3381 4096 4.340019 TTGCAACGCACGGGCATG 62.340 61.111 11.77 9.58 38.71 4.06
3382 4097 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3406 4121 5.355350 CCGATTCTCACAGCCTATTCTTTTT 59.645 40.000 0.00 0.00 0.00 1.94
3407 4122 4.878397 CCGATTCTCACAGCCTATTCTTTT 59.122 41.667 0.00 0.00 0.00 2.27
3408 4123 4.446371 CCGATTCTCACAGCCTATTCTTT 58.554 43.478 0.00 0.00 0.00 2.52
3409 4124 3.181461 CCCGATTCTCACAGCCTATTCTT 60.181 47.826 0.00 0.00 0.00 2.52
3410 4125 2.366916 CCCGATTCTCACAGCCTATTCT 59.633 50.000 0.00 0.00 0.00 2.40
3411 4126 2.365617 TCCCGATTCTCACAGCCTATTC 59.634 50.000 0.00 0.00 0.00 1.75
3412 4127 2.398588 TCCCGATTCTCACAGCCTATT 58.601 47.619 0.00 0.00 0.00 1.73
3413 4128 2.088104 TCCCGATTCTCACAGCCTAT 57.912 50.000 0.00 0.00 0.00 2.57
3414 4129 1.688735 CATCCCGATTCTCACAGCCTA 59.311 52.381 0.00 0.00 0.00 3.93
3415 4130 0.467384 CATCCCGATTCTCACAGCCT 59.533 55.000 0.00 0.00 0.00 4.58
3416 4131 0.179000 ACATCCCGATTCTCACAGCC 59.821 55.000 0.00 0.00 0.00 4.85
3417 4132 1.293924 CACATCCCGATTCTCACAGC 58.706 55.000 0.00 0.00 0.00 4.40
3418 4133 1.293924 GCACATCCCGATTCTCACAG 58.706 55.000 0.00 0.00 0.00 3.66
3419 4134 0.460109 CGCACATCCCGATTCTCACA 60.460 55.000 0.00 0.00 0.00 3.58
3420 4135 0.179111 TCGCACATCCCGATTCTCAC 60.179 55.000 0.00 0.00 0.00 3.51
3421 4136 0.534873 TTCGCACATCCCGATTCTCA 59.465 50.000 0.00 0.00 34.35 3.27
3422 4137 1.528586 CATTCGCACATCCCGATTCTC 59.471 52.381 0.00 0.00 34.35 2.87
3423 4138 1.134401 ACATTCGCACATCCCGATTCT 60.134 47.619 0.00 0.00 34.35 2.40
3424 4139 1.003545 CACATTCGCACATCCCGATTC 60.004 52.381 0.00 0.00 34.35 2.52
3425 4140 1.016627 CACATTCGCACATCCCGATT 58.983 50.000 0.00 0.00 34.35 3.34
3426 4141 0.107703 ACACATTCGCACATCCCGAT 60.108 50.000 0.00 0.00 34.35 4.18
3427 4142 0.533032 TACACATTCGCACATCCCGA 59.467 50.000 0.00 0.00 0.00 5.14
3428 4143 0.930310 CTACACATTCGCACATCCCG 59.070 55.000 0.00 0.00 0.00 5.14
3429 4144 2.309528 TCTACACATTCGCACATCCC 57.690 50.000 0.00 0.00 0.00 3.85
3430 4145 4.332543 TCATTTCTACACATTCGCACATCC 59.667 41.667 0.00 0.00 0.00 3.51
3431 4146 5.469373 TCATTTCTACACATTCGCACATC 57.531 39.130 0.00 0.00 0.00 3.06
3432 4147 5.878332 TTCATTTCTACACATTCGCACAT 57.122 34.783 0.00 0.00 0.00 3.21
3433 4148 5.468409 TCTTTCATTTCTACACATTCGCACA 59.532 36.000 0.00 0.00 0.00 4.57
3434 4149 5.927030 TCTTTCATTTCTACACATTCGCAC 58.073 37.500 0.00 0.00 0.00 5.34
3435 4150 6.204688 AGTTCTTTCATTTCTACACATTCGCA 59.795 34.615 0.00 0.00 0.00 5.10
3436 4151 6.603095 AGTTCTTTCATTTCTACACATTCGC 58.397 36.000 0.00 0.00 0.00 4.70
3437 4152 9.450807 AAAAGTTCTTTCATTTCTACACATTCG 57.549 29.630 0.00 0.00 0.00 3.34
3440 4155 9.956720 CTCAAAAGTTCTTTCATTTCTACACAT 57.043 29.630 0.00 0.00 0.00 3.21
3441 4156 9.173021 TCTCAAAAGTTCTTTCATTTCTACACA 57.827 29.630 0.00 0.00 0.00 3.72
3451 4166 9.927668 ACTTGAAAATTCTCAAAAGTTCTTTCA 57.072 25.926 0.00 0.00 34.96 2.69
3467 4182 8.611757 GCCAACAAATGTTCTAACTTGAAAATT 58.388 29.630 0.00 0.00 35.92 1.82
3468 4183 7.226523 GGCCAACAAATGTTCTAACTTGAAAAT 59.773 33.333 0.00 0.00 35.83 1.82
3469 4184 6.536941 GGCCAACAAATGTTCTAACTTGAAAA 59.463 34.615 0.00 0.00 35.83 2.29
3470 4185 6.045955 GGCCAACAAATGTTCTAACTTGAAA 58.954 36.000 0.00 0.00 35.83 2.69
3471 4186 5.362430 AGGCCAACAAATGTTCTAACTTGAA 59.638 36.000 5.01 0.00 35.83 2.69
3472 4187 4.892934 AGGCCAACAAATGTTCTAACTTGA 59.107 37.500 5.01 0.00 35.83 3.02
3473 4188 4.984161 CAGGCCAACAAATGTTCTAACTTG 59.016 41.667 5.01 0.00 35.83 3.16
3474 4189 4.649218 ACAGGCCAACAAATGTTCTAACTT 59.351 37.500 5.01 0.00 35.83 2.66
3475 4190 4.215109 ACAGGCCAACAAATGTTCTAACT 58.785 39.130 5.01 0.00 35.83 2.24
3476 4191 4.278419 AGACAGGCCAACAAATGTTCTAAC 59.722 41.667 5.01 0.00 35.83 2.34
3477 4192 4.469657 AGACAGGCCAACAAATGTTCTAA 58.530 39.130 5.01 0.00 35.83 2.10
3478 4193 4.098914 AGACAGGCCAACAAATGTTCTA 57.901 40.909 5.01 0.00 35.83 2.10
3479 4194 2.949447 AGACAGGCCAACAAATGTTCT 58.051 42.857 5.01 0.00 35.83 3.01
3480 4195 3.068024 TGAAGACAGGCCAACAAATGTTC 59.932 43.478 5.01 0.00 35.83 3.18
3481 4196 3.030291 TGAAGACAGGCCAACAAATGTT 58.970 40.909 5.01 0.00 39.12 2.71
3482 4197 2.362077 GTGAAGACAGGCCAACAAATGT 59.638 45.455 5.01 0.00 0.00 2.71
3483 4198 2.624838 AGTGAAGACAGGCCAACAAATG 59.375 45.455 5.01 0.00 0.00 2.32
3484 4199 2.624838 CAGTGAAGACAGGCCAACAAAT 59.375 45.455 5.01 0.00 0.00 2.32
3485 4200 2.023673 CAGTGAAGACAGGCCAACAAA 58.976 47.619 5.01 0.00 0.00 2.83
3486 4201 1.679139 CAGTGAAGACAGGCCAACAA 58.321 50.000 5.01 0.00 0.00 2.83
3487 4202 0.179020 CCAGTGAAGACAGGCCAACA 60.179 55.000 5.01 0.00 0.00 3.33
3488 4203 1.518903 GCCAGTGAAGACAGGCCAAC 61.519 60.000 5.01 0.00 46.59 3.77
3489 4204 1.228245 GCCAGTGAAGACAGGCCAA 60.228 57.895 5.01 0.00 46.59 4.52
3490 4205 2.431683 GCCAGTGAAGACAGGCCA 59.568 61.111 5.01 0.00 46.59 5.36
3493 4208 1.000938 GCAAAAGCCAGTGAAGACAGG 60.001 52.381 0.00 0.00 0.00 4.00
3494 4209 1.000938 GGCAAAAGCCAGTGAAGACAG 60.001 52.381 0.84 0.00 0.00 3.51
3495 4210 1.032014 GGCAAAAGCCAGTGAAGACA 58.968 50.000 0.84 0.00 0.00 3.41
3496 4211 1.032014 TGGCAAAAGCCAGTGAAGAC 58.968 50.000 4.86 0.00 34.56 3.01
3497 4212 3.511362 TGGCAAAAGCCAGTGAAGA 57.489 47.368 4.86 0.00 34.56 2.87
3504 4219 3.294493 GTCGCCTGGCAAAAGCCA 61.294 61.111 20.29 9.09 38.29 4.75
3505 4220 4.056125 GGTCGCCTGGCAAAAGCC 62.056 66.667 20.29 8.69 0.00 4.35
3506 4221 4.404654 CGGTCGCCTGGCAAAAGC 62.405 66.667 20.29 11.67 0.00 3.51
3507 4222 3.737172 CCGGTCGCCTGGCAAAAG 61.737 66.667 20.29 6.85 0.00 2.27
3508 4223 4.572571 ACCGGTCGCCTGGCAAAA 62.573 61.111 20.29 0.00 0.00 2.44
3513 4228 2.028125 ATATCACACCGGTCGCCTGG 62.028 60.000 2.59 0.00 0.00 4.45
3514 4229 0.597637 GATATCACACCGGTCGCCTG 60.598 60.000 2.59 0.00 0.00 4.85
3515 4230 0.755698 AGATATCACACCGGTCGCCT 60.756 55.000 2.59 0.00 0.00 5.52
3516 4231 0.956633 TAGATATCACACCGGTCGCC 59.043 55.000 2.59 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.