Multiple sequence alignment - TraesCS1B01G155800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G155800 chr1B 100.000 2798 0 0 1 2798 263561792 263564589 0.000000e+00 5168.0
1 TraesCS1B01G155800 chr1B 94.231 52 3 0 34 85 660917450 660917501 2.310000e-11 80.5
2 TraesCS1B01G155800 chr1D 91.218 1412 42 15 599 1993 189662071 189663417 0.000000e+00 1845.0
3 TraesCS1B01G155800 chr1D 96.217 793 24 1 2006 2798 189663570 189664356 0.000000e+00 1293.0
4 TraesCS1B01G155800 chr1D 92.308 78 3 3 495 570 178459579 178459655 1.060000e-19 108.0
5 TraesCS1B01G155800 chr1D 90.123 81 2 6 498 573 98801521 98801442 1.770000e-17 100.0
6 TraesCS1B01G155800 chr1D 100.000 29 0 0 2025 2053 189663510 189663538 1.000000e-03 54.7
7 TraesCS1B01G155800 chr1A 86.235 988 67 34 1818 2798 221709559 221710484 0.000000e+00 1007.0
8 TraesCS1B01G155800 chr1A 90.217 644 21 3 1200 1831 221708924 221709537 0.000000e+00 802.0
9 TraesCS1B01G155800 chr1A 83.386 632 39 19 535 1138 221708308 221708901 2.470000e-145 525.0
10 TraesCS1B01G155800 chr1A 100.000 29 0 0 57 85 60706913 60706941 1.000000e-03 54.7
11 TraesCS1B01G155800 chr6B 99.029 412 3 1 87 498 716468673 716469083 0.000000e+00 737.0
12 TraesCS1B01G155800 chr6B 98.783 411 3 2 88 498 438088475 438088883 0.000000e+00 730.0
13 TraesCS1B01G155800 chr6B 91.667 48 4 0 38 85 132661303 132661350 1.800000e-07 67.6
14 TraesCS1B01G155800 chr3A 97.669 429 8 2 87 514 743231993 743232420 0.000000e+00 736.0
15 TraesCS1B01G155800 chr3A 98.082 417 7 1 81 497 1324130 1324545 0.000000e+00 725.0
16 TraesCS1B01G155800 chr3A 98.309 414 6 1 85 498 36761886 36762298 0.000000e+00 725.0
17 TraesCS1B01G155800 chr3A 95.536 448 12 7 66 510 646586742 646586300 0.000000e+00 710.0
18 TraesCS1B01G155800 chr5A 98.558 416 4 2 86 500 111628330 111628744 0.000000e+00 734.0
19 TraesCS1B01G155800 chr5A 98.317 416 6 1 83 498 470080071 470080485 0.000000e+00 728.0
20 TraesCS1B01G155800 chr5A 92.308 52 4 0 34 85 520618966 520619017 1.070000e-09 75.0
21 TraesCS1B01G155800 chr5A 92.308 52 4 0 34 85 606026043 606026094 1.070000e-09 75.0
22 TraesCS1B01G155800 chr5A 96.970 33 1 0 53 85 299502546 299502514 3.890000e-04 56.5
23 TraesCS1B01G155800 chr6A 98.313 415 5 2 85 499 115218864 115218452 0.000000e+00 726.0
24 TraesCS1B01G155800 chr6A 90.196 51 4 1 38 87 121884316 121884266 6.470000e-07 65.8
25 TraesCS1B01G155800 chr3B 81.699 153 22 6 404 553 633370044 633369895 3.780000e-24 122.0
26 TraesCS1B01G155800 chr3B 91.026 78 3 4 495 571 611179035 611179109 4.930000e-18 102.0
27 TraesCS1B01G155800 chr2A 94.521 73 1 3 498 569 602811331 602811261 2.950000e-20 110.0
28 TraesCS1B01G155800 chr2A 90.909 44 2 2 46 88 102738542 102738584 1.080000e-04 58.4
29 TraesCS1B01G155800 chr2D 95.588 68 2 1 498 564 587755629 587755562 1.060000e-19 108.0
30 TraesCS1B01G155800 chr4A 93.151 73 3 2 494 565 175653675 175653746 3.810000e-19 106.0
31 TraesCS1B01G155800 chr4B 93.151 73 1 4 498 569 63765752 63765683 1.370000e-18 104.0
32 TraesCS1B01G155800 chr2B 93.056 72 3 2 498 568 550044109 550044039 1.370000e-18 104.0
33 TraesCS1B01G155800 chr5B 92.308 52 4 0 34 85 513633365 513633416 1.070000e-09 75.0
34 TraesCS1B01G155800 chr7B 96.970 33 1 0 53 85 550088751 550088783 3.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G155800 chr1B 263561792 263564589 2797 False 5168.000000 5168 100.000000 1 2798 1 chr1B.!!$F1 2797
1 TraesCS1B01G155800 chr1D 189662071 189664356 2285 False 1064.233333 1845 95.811667 599 2798 3 chr1D.!!$F2 2199
2 TraesCS1B01G155800 chr1A 221708308 221710484 2176 False 778.000000 1007 86.612667 535 2798 3 chr1A.!!$F2 2263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 965 0.036875 AGCCTCTGCAACCAAGTACC 59.963 55.0 0.0 0.0 41.13 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1855 0.165511 GACGTCGAGTAGTCAACGCT 59.834 55.0 10.91 0.0 38.64 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.312154 TCCGAAAATAGTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 35.20 3.16
26 27 7.175816 TCCGAAAATAGTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 35.20 3.41
27 28 7.975616 CCGAAAATAGTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 35.20 3.41
103 104 3.729526 CACCGAAAGTGCTATTGTGAG 57.270 47.619 0.00 0.00 40.28 3.51
104 105 2.076863 ACCGAAAGTGCTATTGTGAGC 58.923 47.619 0.00 0.00 43.16 4.26
105 106 2.289694 ACCGAAAGTGCTATTGTGAGCT 60.290 45.455 0.00 0.00 43.27 4.09
106 107 2.349886 CCGAAAGTGCTATTGTGAGCTC 59.650 50.000 6.82 6.82 43.27 4.09
107 108 2.028523 CGAAAGTGCTATTGTGAGCTCG 59.971 50.000 9.64 0.00 43.27 5.03
108 109 3.254060 GAAAGTGCTATTGTGAGCTCGA 58.746 45.455 9.64 0.00 43.27 4.04
109 110 2.575694 AGTGCTATTGTGAGCTCGAG 57.424 50.000 8.45 8.45 43.27 4.04
110 111 0.926846 GTGCTATTGTGAGCTCGAGC 59.073 55.000 30.01 30.01 43.27 5.03
120 121 2.813042 GCTCGAGCTCACAGGCAC 60.813 66.667 29.88 0.00 38.21 5.01
121 122 2.125753 CTCGAGCTCACAGGCACC 60.126 66.667 15.40 0.00 34.17 5.01
122 123 3.655810 CTCGAGCTCACAGGCACCC 62.656 68.421 15.40 0.00 34.17 4.61
123 124 3.699894 CGAGCTCACAGGCACCCT 61.700 66.667 15.40 0.00 34.17 4.34
124 125 2.753029 GAGCTCACAGGCACCCTT 59.247 61.111 9.40 0.00 34.17 3.95
125 126 1.073897 GAGCTCACAGGCACCCTTT 59.926 57.895 9.40 0.00 34.17 3.11
126 127 1.228367 AGCTCACAGGCACCCTTTG 60.228 57.895 0.00 0.00 33.03 2.77
139 140 4.483476 CACCCTTTGCTACAGTACAAAC 57.517 45.455 0.00 0.00 32.60 2.93
140 141 3.880490 CACCCTTTGCTACAGTACAAACA 59.120 43.478 0.00 0.00 32.60 2.83
141 142 4.336993 CACCCTTTGCTACAGTACAAACAA 59.663 41.667 0.00 0.00 32.60 2.83
142 143 4.951094 ACCCTTTGCTACAGTACAAACAAA 59.049 37.500 0.00 0.00 32.60 2.83
143 144 5.419471 ACCCTTTGCTACAGTACAAACAAAA 59.581 36.000 0.00 0.00 32.60 2.44
144 145 6.071278 ACCCTTTGCTACAGTACAAACAAAAA 60.071 34.615 0.00 0.00 32.60 1.94
145 146 6.475402 CCCTTTGCTACAGTACAAACAAAAAG 59.525 38.462 0.00 0.00 32.60 2.27
146 147 7.254852 CCTTTGCTACAGTACAAACAAAAAGA 58.745 34.615 0.00 0.00 32.60 2.52
147 148 7.757624 CCTTTGCTACAGTACAAACAAAAAGAA 59.242 33.333 0.00 0.00 32.60 2.52
148 149 9.301153 CTTTGCTACAGTACAAACAAAAAGAAT 57.699 29.630 0.00 0.00 32.60 2.40
207 208 7.859598 GGCAACAAACATTGACATATTTTTCA 58.140 30.769 0.00 0.00 37.56 2.69
208 209 7.798052 GGCAACAAACATTGACATATTTTTCAC 59.202 33.333 0.00 0.00 37.56 3.18
209 210 8.333908 GCAACAAACATTGACATATTTTTCACA 58.666 29.630 0.00 0.00 0.00 3.58
212 213 8.497554 ACAAACATTGACATATTTTTCACATGC 58.502 29.630 0.00 0.00 0.00 4.06
213 214 6.874297 ACATTGACATATTTTTCACATGCG 57.126 33.333 0.00 0.00 0.00 4.73
214 215 6.389091 ACATTGACATATTTTTCACATGCGT 58.611 32.000 0.00 0.00 0.00 5.24
215 216 7.534282 ACATTGACATATTTTTCACATGCGTA 58.466 30.769 0.00 0.00 0.00 4.42
216 217 7.484641 ACATTGACATATTTTTCACATGCGTAC 59.515 33.333 0.00 0.00 0.00 3.67
217 218 6.487689 TGACATATTTTTCACATGCGTACA 57.512 33.333 0.00 0.00 0.00 2.90
218 219 6.903419 TGACATATTTTTCACATGCGTACAA 58.097 32.000 0.00 0.00 0.00 2.41
219 220 7.363431 TGACATATTTTTCACATGCGTACAAA 58.637 30.769 0.00 0.00 0.00 2.83
220 221 8.026026 TGACATATTTTTCACATGCGTACAAAT 58.974 29.630 0.00 0.00 0.00 2.32
221 222 8.755696 ACATATTTTTCACATGCGTACAAATT 57.244 26.923 0.00 0.00 0.00 1.82
222 223 9.202273 ACATATTTTTCACATGCGTACAAATTT 57.798 25.926 0.00 0.00 0.00 1.82
225 226 7.525688 TTTTTCACATGCGTACAAATTTTCA 57.474 28.000 0.00 0.00 0.00 2.69
226 227 7.706281 TTTTCACATGCGTACAAATTTTCAT 57.294 28.000 0.00 0.00 0.00 2.57
227 228 6.687653 TTCACATGCGTACAAATTTTCATG 57.312 33.333 0.00 6.33 37.78 3.07
228 229 6.006759 TCACATGCGTACAAATTTTCATGA 57.993 33.333 12.23 0.00 36.23 3.07
229 230 5.855925 TCACATGCGTACAAATTTTCATGAC 59.144 36.000 12.23 0.47 36.23 3.06
230 231 5.628606 CACATGCGTACAAATTTTCATGACA 59.371 36.000 12.23 0.00 36.23 3.58
231 232 6.143598 CACATGCGTACAAATTTTCATGACAA 59.856 34.615 12.23 0.00 36.23 3.18
232 233 6.699204 ACATGCGTACAAATTTTCATGACAAA 59.301 30.769 12.23 0.11 36.23 2.83
233 234 7.223582 ACATGCGTACAAATTTTCATGACAAAA 59.776 29.630 12.23 0.00 36.23 2.44
234 235 7.706281 TGCGTACAAATTTTCATGACAAAAT 57.294 28.000 0.00 0.00 37.53 1.82
235 236 7.562412 TGCGTACAAATTTTCATGACAAAATG 58.438 30.769 6.20 7.13 36.33 2.32
236 237 7.436376 TGCGTACAAATTTTCATGACAAAATGA 59.564 29.630 13.71 0.00 36.33 2.57
237 238 7.735586 GCGTACAAATTTTCATGACAAAATGAC 59.264 33.333 13.71 8.49 36.33 3.06
238 239 8.750416 CGTACAAATTTTCATGACAAAATGACA 58.250 29.630 13.71 2.89 36.33 3.58
245 246 8.890124 TTTTCATGACAAAATGACATTCATGT 57.110 26.923 19.91 17.88 42.71 3.21
246 247 9.978044 TTTTCATGACAAAATGACATTCATGTA 57.022 25.926 19.91 12.46 42.71 2.29
247 248 9.628746 TTTCATGACAAAATGACATTCATGTAG 57.371 29.630 19.91 13.05 42.71 2.74
248 249 7.764331 TCATGACAAAATGACATTCATGTAGG 58.236 34.615 19.91 12.61 42.71 3.18
249 250 7.394077 TCATGACAAAATGACATTCATGTAGGT 59.606 33.333 19.91 0.00 42.71 3.08
250 251 7.144722 TGACAAAATGACATTCATGTAGGTC 57.855 36.000 15.63 9.84 41.95 3.85
251 252 6.942005 TGACAAAATGACATTCATGTAGGTCT 59.058 34.615 16.41 2.02 41.95 3.85
252 253 7.119699 TGACAAAATGACATTCATGTAGGTCTC 59.880 37.037 16.41 6.74 41.95 3.36
253 254 6.942005 ACAAAATGACATTCATGTAGGTCTCA 59.058 34.615 16.41 0.60 41.95 3.27
254 255 7.120285 ACAAAATGACATTCATGTAGGTCTCAG 59.880 37.037 16.41 6.45 41.95 3.35
255 256 4.128925 TGACATTCATGTAGGTCTCAGC 57.871 45.455 16.41 0.00 41.95 4.26
256 257 3.515104 TGACATTCATGTAGGTCTCAGCA 59.485 43.478 16.41 0.00 41.95 4.41
257 258 4.020307 TGACATTCATGTAGGTCTCAGCAA 60.020 41.667 16.41 0.00 41.95 3.91
258 259 4.910195 ACATTCATGTAGGTCTCAGCAAA 58.090 39.130 0.00 0.00 39.68 3.68
259 260 5.316167 ACATTCATGTAGGTCTCAGCAAAA 58.684 37.500 0.00 0.00 39.68 2.44
260 261 5.769662 ACATTCATGTAGGTCTCAGCAAAAA 59.230 36.000 0.00 0.00 39.68 1.94
285 286 8.770850 AAAAACAAAATCGATGCTCAAAAATG 57.229 26.923 0.00 0.00 0.00 2.32
286 287 5.520022 ACAAAATCGATGCTCAAAAATGC 57.480 34.783 0.00 0.00 0.00 3.56
287 288 5.232463 ACAAAATCGATGCTCAAAAATGCT 58.768 33.333 0.00 0.00 0.00 3.79
288 289 5.697633 ACAAAATCGATGCTCAAAAATGCTT 59.302 32.000 0.00 0.00 0.00 3.91
289 290 6.128742 ACAAAATCGATGCTCAAAAATGCTTC 60.129 34.615 0.00 0.00 0.00 3.86
290 291 3.492421 TCGATGCTCAAAAATGCTTCC 57.508 42.857 0.00 0.00 32.10 3.46
291 292 2.819019 TCGATGCTCAAAAATGCTTCCA 59.181 40.909 0.00 0.00 32.10 3.53
292 293 3.255395 TCGATGCTCAAAAATGCTTCCAA 59.745 39.130 0.00 0.00 32.10 3.53
293 294 3.989167 CGATGCTCAAAAATGCTTCCAAA 59.011 39.130 0.00 0.00 32.10 3.28
294 295 4.448395 CGATGCTCAAAAATGCTTCCAAAA 59.552 37.500 0.00 0.00 32.10 2.44
295 296 5.050227 CGATGCTCAAAAATGCTTCCAAAAA 60.050 36.000 0.00 0.00 32.10 1.94
296 297 5.482686 TGCTCAAAAATGCTTCCAAAAAC 57.517 34.783 0.00 0.00 0.00 2.43
297 298 4.940046 TGCTCAAAAATGCTTCCAAAAACA 59.060 33.333 0.00 0.00 0.00 2.83
298 299 5.064962 TGCTCAAAAATGCTTCCAAAAACAG 59.935 36.000 0.00 0.00 0.00 3.16
299 300 5.065090 GCTCAAAAATGCTTCCAAAAACAGT 59.935 36.000 0.00 0.00 0.00 3.55
300 301 6.403527 GCTCAAAAATGCTTCCAAAAACAGTT 60.404 34.615 0.00 0.00 0.00 3.16
301 302 7.446001 TCAAAAATGCTTCCAAAAACAGTTT 57.554 28.000 0.00 0.00 32.04 2.66
302 303 7.880105 TCAAAAATGCTTCCAAAAACAGTTTT 58.120 26.923 5.37 5.37 38.53 2.43
303 304 8.355913 TCAAAAATGCTTCCAAAAACAGTTTTT 58.644 25.926 16.87 16.87 36.91 1.94
344 345 4.873746 TTTTTGTTGACACCTCCACAAA 57.126 36.364 0.00 0.00 0.00 2.83
345 346 5.413309 TTTTTGTTGACACCTCCACAAAT 57.587 34.783 3.82 0.00 0.00 2.32
346 347 4.383850 TTTGTTGACACCTCCACAAATG 57.616 40.909 0.00 0.00 0.00 2.32
347 348 3.011566 TGTTGACACCTCCACAAATGT 57.988 42.857 0.00 0.00 0.00 2.71
348 349 2.948979 TGTTGACACCTCCACAAATGTC 59.051 45.455 0.00 0.00 41.51 3.06
350 351 3.507162 TGACACCTCCACAAATGTCAT 57.493 42.857 1.91 0.00 44.88 3.06
351 352 3.831323 TGACACCTCCACAAATGTCATT 58.169 40.909 1.91 0.00 44.88 2.57
352 353 4.214310 TGACACCTCCACAAATGTCATTT 58.786 39.130 4.91 4.91 44.88 2.32
353 354 4.278170 TGACACCTCCACAAATGTCATTTC 59.722 41.667 7.87 0.00 44.88 2.17
354 355 4.214310 ACACCTCCACAAATGTCATTTCA 58.786 39.130 7.87 0.00 0.00 2.69
355 356 4.834496 ACACCTCCACAAATGTCATTTCAT 59.166 37.500 7.87 0.00 0.00 2.57
356 357 5.047802 ACACCTCCACAAATGTCATTTCATC 60.048 40.000 7.87 0.00 0.00 2.92
357 358 5.047872 CACCTCCACAAATGTCATTTCATCA 60.048 40.000 7.87 0.00 0.00 3.07
358 359 5.047802 ACCTCCACAAATGTCATTTCATCAC 60.048 40.000 7.87 0.00 0.00 3.06
359 360 5.045668 TCCACAAATGTCATTTCATCACG 57.954 39.130 7.87 0.00 0.00 4.35
360 361 4.759183 TCCACAAATGTCATTTCATCACGA 59.241 37.500 7.87 0.00 0.00 4.35
361 362 5.240403 TCCACAAATGTCATTTCATCACGAA 59.760 36.000 7.87 0.00 0.00 3.85
363 364 6.420306 CCACAAATGTCATTTCATCACGAAAA 59.580 34.615 7.87 0.00 46.48 2.29
364 365 7.116662 CCACAAATGTCATTTCATCACGAAAAT 59.883 33.333 7.87 0.00 46.48 1.82
365 366 8.489559 CACAAATGTCATTTCATCACGAAAATT 58.510 29.630 7.87 0.00 46.48 1.82
366 367 8.489559 ACAAATGTCATTTCATCACGAAAATTG 58.510 29.630 7.87 0.00 46.48 2.32
367 368 7.585286 AATGTCATTTCATCACGAAAATTGG 57.415 32.000 0.00 0.00 46.48 3.16
368 369 4.922692 TGTCATTTCATCACGAAAATTGGC 59.077 37.500 0.00 0.00 46.48 4.52
369 370 4.922692 GTCATTTCATCACGAAAATTGGCA 59.077 37.500 0.00 0.00 46.48 4.92
370 371 4.922692 TCATTTCATCACGAAAATTGGCAC 59.077 37.500 0.00 0.00 46.48 5.01
371 372 2.610219 TCATCACGAAAATTGGCACG 57.390 45.000 0.00 0.00 0.00 5.34
372 373 0.984109 CATCACGAAAATTGGCACGC 59.016 50.000 0.00 0.00 0.00 5.34
373 374 0.595588 ATCACGAAAATTGGCACGCA 59.404 45.000 0.00 0.00 0.00 5.24
374 375 0.595588 TCACGAAAATTGGCACGCAT 59.404 45.000 0.00 0.00 0.00 4.73
375 376 0.709467 CACGAAAATTGGCACGCATG 59.291 50.000 0.00 0.00 0.00 4.06
376 377 0.313672 ACGAAAATTGGCACGCATGT 59.686 45.000 0.00 0.00 0.00 3.21
377 378 1.537638 ACGAAAATTGGCACGCATGTA 59.462 42.857 0.00 0.00 0.00 2.29
378 379 2.176369 CGAAAATTGGCACGCATGTAG 58.824 47.619 0.00 0.00 0.00 2.74
379 380 2.159585 CGAAAATTGGCACGCATGTAGA 60.160 45.455 0.00 0.00 0.00 2.59
380 381 3.669290 CGAAAATTGGCACGCATGTAGAA 60.669 43.478 0.00 0.00 0.00 2.10
381 382 3.932545 AAATTGGCACGCATGTAGAAA 57.067 38.095 0.00 0.00 0.00 2.52
382 383 3.932545 AATTGGCACGCATGTAGAAAA 57.067 38.095 0.00 0.00 0.00 2.29
383 384 3.932545 ATTGGCACGCATGTAGAAAAA 57.067 38.095 0.00 0.00 0.00 1.94
464 465 3.881220 GGATTTTACTGTTCATCCGGGA 58.119 45.455 0.00 0.00 0.00 5.14
465 466 4.461198 GGATTTTACTGTTCATCCGGGAT 58.539 43.478 2.97 2.97 0.00 3.85
466 467 4.515567 GGATTTTACTGTTCATCCGGGATC 59.484 45.833 6.55 0.00 0.00 3.36
467 468 4.561500 TTTTACTGTTCATCCGGGATCA 57.438 40.909 6.55 1.50 0.00 2.92
468 469 3.536956 TTACTGTTCATCCGGGATCAC 57.463 47.619 6.55 7.69 0.00 3.06
469 470 1.573108 ACTGTTCATCCGGGATCACT 58.427 50.000 6.55 0.00 0.00 3.41
470 471 1.208052 ACTGTTCATCCGGGATCACTG 59.792 52.381 6.55 12.67 0.00 3.66
472 473 0.541863 GTTCATCCGGGATCACTGGT 59.458 55.000 6.55 0.00 46.44 4.00
473 474 0.541392 TTCATCCGGGATCACTGGTG 59.459 55.000 6.55 0.00 46.44 4.17
474 475 1.524621 CATCCGGGATCACTGGTGC 60.525 63.158 6.55 0.00 46.44 5.01
475 476 2.746375 ATCCGGGATCACTGGTGCC 61.746 63.158 2.97 0.00 46.44 5.01
476 477 4.489771 CCGGGATCACTGGTGCCC 62.490 72.222 0.00 6.41 41.03 5.36
478 479 4.489771 GGGATCACTGGTGCCCGG 62.490 72.222 0.00 0.00 35.68 5.73
479 480 4.489771 GGATCACTGGTGCCCGGG 62.490 72.222 19.09 19.09 33.40 5.73
480 481 3.399181 GATCACTGGTGCCCGGGA 61.399 66.667 29.31 6.60 33.40 5.14
481 482 2.692368 ATCACTGGTGCCCGGGAT 60.692 61.111 29.31 2.07 33.40 3.85
482 483 2.666596 GATCACTGGTGCCCGGGATC 62.667 65.000 29.31 16.17 33.18 3.36
483 484 3.716195 CACTGGTGCCCGGGATCA 61.716 66.667 29.31 17.45 33.40 2.92
484 485 2.933287 ACTGGTGCCCGGGATCAA 60.933 61.111 29.31 8.64 33.40 2.57
485 486 2.308722 ACTGGTGCCCGGGATCAAT 61.309 57.895 29.31 5.34 33.40 2.57
486 487 1.076777 CTGGTGCCCGGGATCAATT 60.077 57.895 29.31 0.00 0.00 2.32
487 488 1.077068 TGGTGCCCGGGATCAATTC 60.077 57.895 29.31 4.52 0.00 2.17
488 489 1.828224 GGTGCCCGGGATCAATTCC 60.828 63.158 29.31 7.61 44.62 3.01
489 490 1.227383 GTGCCCGGGATCAATTCCT 59.773 57.895 29.31 0.00 44.75 3.36
490 491 0.819666 GTGCCCGGGATCAATTCCTC 60.820 60.000 29.31 1.80 44.75 3.71
491 492 1.228276 GCCCGGGATCAATTCCTCC 60.228 63.158 29.31 0.00 44.75 4.30
492 493 1.071471 CCCGGGATCAATTCCTCCG 59.929 63.158 18.48 0.00 44.75 4.63
493 494 1.598130 CCGGGATCAATTCCTCCGC 60.598 63.158 0.00 0.00 44.75 5.54
494 495 1.956170 CGGGATCAATTCCTCCGCG 60.956 63.158 0.00 0.00 44.75 6.46
495 496 1.146263 GGGATCAATTCCTCCGCGT 59.854 57.895 4.92 0.00 44.75 6.01
496 497 0.880718 GGGATCAATTCCTCCGCGTC 60.881 60.000 4.92 0.00 44.75 5.19
497 498 0.880718 GGATCAATTCCTCCGCGTCC 60.881 60.000 4.92 0.00 41.78 4.79
498 499 0.105039 GATCAATTCCTCCGCGTCCT 59.895 55.000 4.92 0.00 0.00 3.85
499 500 1.340248 GATCAATTCCTCCGCGTCCTA 59.660 52.381 4.92 0.00 0.00 2.94
500 501 0.744874 TCAATTCCTCCGCGTCCTAG 59.255 55.000 4.92 0.00 0.00 3.02
501 502 0.744874 CAATTCCTCCGCGTCCTAGA 59.255 55.000 4.92 0.00 0.00 2.43
502 503 1.341531 CAATTCCTCCGCGTCCTAGAT 59.658 52.381 4.92 0.00 0.00 1.98
503 504 2.557056 CAATTCCTCCGCGTCCTAGATA 59.443 50.000 4.92 0.00 0.00 1.98
504 505 1.602311 TTCCTCCGCGTCCTAGATAC 58.398 55.000 4.92 0.00 0.00 2.24
505 506 0.471191 TCCTCCGCGTCCTAGATACA 59.529 55.000 4.92 0.00 0.00 2.29
506 507 1.073444 TCCTCCGCGTCCTAGATACAT 59.927 52.381 4.92 0.00 0.00 2.29
507 508 1.469308 CCTCCGCGTCCTAGATACATC 59.531 57.143 4.92 0.00 0.00 3.06
508 509 1.469308 CTCCGCGTCCTAGATACATCC 59.531 57.143 4.92 0.00 0.00 3.51
509 510 1.073444 TCCGCGTCCTAGATACATCCT 59.927 52.381 4.92 0.00 0.00 3.24
510 511 1.887198 CCGCGTCCTAGATACATCCTT 59.113 52.381 4.92 0.00 0.00 3.36
511 512 2.296471 CCGCGTCCTAGATACATCCTTT 59.704 50.000 4.92 0.00 0.00 3.11
512 513 3.243771 CCGCGTCCTAGATACATCCTTTT 60.244 47.826 4.92 0.00 0.00 2.27
513 514 4.369182 CGCGTCCTAGATACATCCTTTTT 58.631 43.478 0.00 0.00 0.00 1.94
514 515 5.508489 CCGCGTCCTAGATACATCCTTTTTA 60.508 44.000 4.92 0.00 0.00 1.52
515 516 6.157211 CGCGTCCTAGATACATCCTTTTTAT 58.843 40.000 0.00 0.00 0.00 1.40
516 517 6.308282 CGCGTCCTAGATACATCCTTTTTATC 59.692 42.308 0.00 0.00 0.00 1.75
517 518 6.590677 GCGTCCTAGATACATCCTTTTTATCC 59.409 42.308 0.00 0.00 0.00 2.59
518 519 7.667557 CGTCCTAGATACATCCTTTTTATCCA 58.332 38.462 0.00 0.00 0.00 3.41
519 520 8.314751 CGTCCTAGATACATCCTTTTTATCCAT 58.685 37.037 0.00 0.00 0.00 3.41
529 530 8.814931 ACATCCTTTTTATCCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
530 531 9.656040 CATCCTTTTTATCCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
531 532 9.880157 ATCCTTTTTATCCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
532 533 8.869109 TCCTTTTTATCCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
541 542 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
557 558 2.329267 TCGGACGGAGGGAGTACTATA 58.671 52.381 0.00 0.00 0.00 1.31
558 559 2.909006 TCGGACGGAGGGAGTACTATAT 59.091 50.000 0.00 0.00 0.00 0.86
559 560 4.096681 TCGGACGGAGGGAGTACTATATA 58.903 47.826 0.00 0.00 0.00 0.86
560 561 4.718774 TCGGACGGAGGGAGTACTATATAT 59.281 45.833 0.00 0.00 0.00 0.86
561 562 5.899547 TCGGACGGAGGGAGTACTATATATA 59.100 44.000 0.00 0.00 0.00 0.86
593 604 0.179012 TTCCCGTTGGTCTGGGTTTC 60.179 55.000 0.00 0.00 46.13 2.78
595 606 2.613506 CCGTTGGTCTGGGTTTCGC 61.614 63.158 0.00 0.00 0.00 4.70
638 652 4.887748 AGTCTGTAATAATGCCGATCAGG 58.112 43.478 0.00 0.00 44.97 3.86
639 653 3.997021 GTCTGTAATAATGCCGATCAGGG 59.003 47.826 5.87 0.00 41.48 4.45
640 654 3.646162 TCTGTAATAATGCCGATCAGGGT 59.354 43.478 5.87 0.00 41.48 4.34
641 655 3.997021 CTGTAATAATGCCGATCAGGGTC 59.003 47.826 5.87 0.00 41.48 4.46
642 656 3.389656 TGTAATAATGCCGATCAGGGTCA 59.610 43.478 5.87 0.00 41.48 4.02
643 657 2.847327 ATAATGCCGATCAGGGTCAG 57.153 50.000 5.87 0.00 41.48 3.51
721 735 0.870307 GGATGTCCGTCCAATCGTCG 60.870 60.000 0.54 0.00 38.20 5.12
748 762 1.281353 GATCGTGCGTGTTGGCAAA 59.719 52.632 0.00 0.00 45.93 3.68
754 768 0.823769 TGCGTGTTGGCAAACCCATA 60.824 50.000 0.00 0.00 44.89 2.74
835 854 2.291741 GCTTCACCTGACAAGTTCCTTG 59.708 50.000 2.54 2.54 45.85 3.61
911 935 5.295787 CGTGTGCAACCATATAAATGTAGGT 59.704 40.000 0.00 0.00 34.36 3.08
940 964 2.347731 GTAGCCTCTGCAACCAAGTAC 58.652 52.381 0.00 0.00 41.13 2.73
941 965 0.036875 AGCCTCTGCAACCAAGTACC 59.963 55.000 0.00 0.00 41.13 3.34
968 992 0.461548 CGCCAGCTACATTCCTCAGA 59.538 55.000 0.00 0.00 0.00 3.27
987 1011 4.686091 TCAGAGACGCAACAAGTTATTCAG 59.314 41.667 0.00 0.00 0.00 3.02
998 1022 5.947443 ACAAGTTATTCAGCAGAAATCAGC 58.053 37.500 0.00 0.00 37.29 4.26
1005 1038 1.041447 AGCAGAAATCAGCCATGGCC 61.041 55.000 33.14 16.53 43.17 5.36
1157 1190 4.384940 ACCTCTTCTTTGCTGACTTCTTC 58.615 43.478 0.00 0.00 0.00 2.87
1158 1191 4.141620 ACCTCTTCTTTGCTGACTTCTTCA 60.142 41.667 0.00 0.00 0.00 3.02
1178 1211 1.796151 CCGCATCGCATGAGTTGTT 59.204 52.632 8.94 0.00 0.00 2.83
1179 1212 1.006086 CCGCATCGCATGAGTTGTTA 58.994 50.000 8.94 0.00 0.00 2.41
1180 1213 1.599071 CCGCATCGCATGAGTTGTTAT 59.401 47.619 8.94 0.00 0.00 1.89
1181 1214 2.799978 CCGCATCGCATGAGTTGTTATA 59.200 45.455 8.94 0.00 0.00 0.98
1182 1215 3.433274 CCGCATCGCATGAGTTGTTATAT 59.567 43.478 8.94 0.00 0.00 0.86
1183 1216 4.434725 CCGCATCGCATGAGTTGTTATATC 60.435 45.833 8.94 0.00 0.00 1.63
1192 1225 6.457392 GCATGAGTTGTTATATCATATGCCGG 60.457 42.308 0.00 0.00 32.51 6.13
1193 1226 5.487433 TGAGTTGTTATATCATATGCCGGG 58.513 41.667 2.18 0.00 0.00 5.73
1194 1227 5.247337 TGAGTTGTTATATCATATGCCGGGA 59.753 40.000 2.18 0.00 0.00 5.14
1195 1228 6.070251 TGAGTTGTTATATCATATGCCGGGAT 60.070 38.462 14.76 14.76 0.00 3.85
1196 1229 6.349300 AGTTGTTATATCATATGCCGGGATC 58.651 40.000 13.51 0.00 0.00 3.36
1197 1230 5.948742 TGTTATATCATATGCCGGGATCA 57.051 39.130 13.51 0.00 0.00 2.92
1198 1231 6.499106 TGTTATATCATATGCCGGGATCAT 57.501 37.500 13.51 4.82 0.00 2.45
1224 1257 7.119699 TGGATCAGCTTGTGTTGATTTAGTTAG 59.880 37.037 0.00 0.00 42.77 2.34
1225 1258 7.119846 GGATCAGCTTGTGTTGATTTAGTTAGT 59.880 37.037 0.00 0.00 42.77 2.24
1226 1259 9.151471 GATCAGCTTGTGTTGATTTAGTTAGTA 57.849 33.333 0.00 0.00 42.77 1.82
1230 1263 7.817962 AGCTTGTGTTGATTTAGTTAGTACGAT 59.182 33.333 0.00 0.00 0.00 3.73
1507 1552 2.787249 CTGATGCTTCCGGCGTTG 59.213 61.111 6.01 0.00 45.43 4.10
1527 1572 1.066502 GGAGCAGGAGACAAGGAAGAC 60.067 57.143 0.00 0.00 0.00 3.01
1582 1627 4.798288 CCGACGCGGTCAAAGATA 57.202 55.556 12.47 0.00 42.73 1.98
1583 1628 2.578369 CCGACGCGGTCAAAGATAG 58.422 57.895 12.47 0.00 42.73 2.08
1584 1629 0.179145 CCGACGCGGTCAAAGATAGT 60.179 55.000 12.47 0.00 42.73 2.12
1585 1630 0.914551 CGACGCGGTCAAAGATAGTG 59.085 55.000 12.47 0.00 32.09 2.74
1586 1631 0.645868 GACGCGGTCAAAGATAGTGC 59.354 55.000 12.47 0.00 32.09 4.40
1587 1632 0.739813 ACGCGGTCAAAGATAGTGCC 60.740 55.000 12.47 0.00 0.00 5.01
1588 1633 1.429148 CGCGGTCAAAGATAGTGCCC 61.429 60.000 0.00 0.00 0.00 5.36
1589 1634 1.429148 GCGGTCAAAGATAGTGCCCG 61.429 60.000 0.00 0.00 0.00 6.13
1590 1635 1.429148 CGGTCAAAGATAGTGCCCGC 61.429 60.000 0.00 0.00 0.00 6.13
1591 1636 1.095807 GGTCAAAGATAGTGCCCGCC 61.096 60.000 0.00 0.00 0.00 6.13
1592 1637 0.107654 GTCAAAGATAGTGCCCGCCT 60.108 55.000 0.00 0.00 0.00 5.52
1593 1638 0.178068 TCAAAGATAGTGCCCGCCTC 59.822 55.000 0.00 0.00 0.00 4.70
1594 1639 1.144057 AAAGATAGTGCCCGCCTCG 59.856 57.895 0.00 0.00 0.00 4.63
1595 1640 1.327690 AAAGATAGTGCCCGCCTCGA 61.328 55.000 0.00 0.00 0.00 4.04
1596 1641 1.115930 AAGATAGTGCCCGCCTCGAT 61.116 55.000 0.00 0.00 0.00 3.59
1597 1642 1.080434 GATAGTGCCCGCCTCGATC 60.080 63.158 0.00 0.00 0.00 3.69
1598 1643 1.806461 GATAGTGCCCGCCTCGATCA 61.806 60.000 0.00 0.00 0.00 2.92
1599 1644 1.399744 ATAGTGCCCGCCTCGATCAA 61.400 55.000 0.00 0.00 0.00 2.57
1600 1645 2.016393 TAGTGCCCGCCTCGATCAAG 62.016 60.000 0.00 0.00 0.00 3.02
1601 1646 4.161295 TGCCCGCCTCGATCAAGG 62.161 66.667 0.00 0.00 39.62 3.61
1602 1647 3.849951 GCCCGCCTCGATCAAGGA 61.850 66.667 3.09 0.00 38.87 3.36
1603 1648 2.107141 CCCGCCTCGATCAAGGAC 59.893 66.667 3.09 0.00 38.87 3.85
1767 1812 1.002087 CTCGTCCTGTTTAGCCTTGGT 59.998 52.381 0.00 0.00 0.00 3.67
1810 1855 0.034767 CCCATGAGCTGAGGCAAGAA 60.035 55.000 0.00 0.00 41.70 2.52
1812 1857 0.733729 CATGAGCTGAGGCAAGAAGC 59.266 55.000 0.00 0.00 41.70 3.86
1953 2035 6.590068 ACTACAGCTGCTTAAGATTCATGAT 58.410 36.000 15.27 0.00 0.00 2.45
1954 2036 5.752892 ACAGCTGCTTAAGATTCATGATG 57.247 39.130 15.27 0.76 0.00 3.07
1955 2037 5.434408 ACAGCTGCTTAAGATTCATGATGA 58.566 37.500 15.27 0.00 0.00 2.92
1970 2052 2.564771 TGATGAATCATGACGGCTTCC 58.435 47.619 0.00 0.00 0.00 3.46
1993 2075 6.442564 TCCTTAATCTGGTACCAACATGTACT 59.557 38.462 17.11 0.00 40.72 2.73
1994 2076 6.761714 CCTTAATCTGGTACCAACATGTACTC 59.238 42.308 17.11 0.00 40.72 2.59
1995 2077 5.755409 AATCTGGTACCAACATGTACTCA 57.245 39.130 17.11 0.00 40.72 3.41
1996 2078 4.530710 TCTGGTACCAACATGTACTCAC 57.469 45.455 17.11 0.00 40.72 3.51
2015 2237 6.848069 ACTCACCTCTCTCTATATAAGCACT 58.152 40.000 0.00 0.00 0.00 4.40
2017 2239 7.085476 TCACCTCTCTCTATATAAGCACTCT 57.915 40.000 0.00 0.00 0.00 3.24
2020 2242 9.461312 CACCTCTCTCTATATAAGCACTCTTAT 57.539 37.037 3.46 3.46 45.02 1.73
2069 2291 4.022416 TCAAATCCTGCACCACAATACAAC 60.022 41.667 0.00 0.00 0.00 3.32
2074 2296 3.507233 CCTGCACCACAATACAACATTCT 59.493 43.478 0.00 0.00 0.00 2.40
2079 2301 6.264292 TGCACCACAATACAACATTCTAAACT 59.736 34.615 0.00 0.00 0.00 2.66
2081 2303 7.651704 GCACCACAATACAACATTCTAAACTTT 59.348 33.333 0.00 0.00 0.00 2.66
2120 2342 8.773033 ATCATTTCTCCTTGTTGGCTATTTAT 57.227 30.769 0.00 0.00 35.26 1.40
2199 2431 4.887748 TCAAAAGCAAACACCTGAACAAA 58.112 34.783 0.00 0.00 0.00 2.83
2200 2432 5.486526 TCAAAAGCAAACACCTGAACAAAT 58.513 33.333 0.00 0.00 0.00 2.32
2201 2433 5.936956 TCAAAAGCAAACACCTGAACAAATT 59.063 32.000 0.00 0.00 0.00 1.82
2202 2434 7.099764 TCAAAAGCAAACACCTGAACAAATTA 58.900 30.769 0.00 0.00 0.00 1.40
2203 2435 7.768120 TCAAAAGCAAACACCTGAACAAATTAT 59.232 29.630 0.00 0.00 0.00 1.28
2204 2436 8.397148 CAAAAGCAAACACCTGAACAAATTATT 58.603 29.630 0.00 0.00 0.00 1.40
2205 2437 8.504812 AAAGCAAACACCTGAACAAATTATTT 57.495 26.923 0.00 0.00 0.00 1.40
2206 2438 7.481275 AGCAAACACCTGAACAAATTATTTG 57.519 32.000 15.25 15.25 45.95 2.32
2224 2456 8.950007 ATTATTTGTCCTTTTTAGGGAAGACA 57.050 30.769 0.00 0.00 34.35 3.41
2225 2457 6.901081 ATTTGTCCTTTTTAGGGAAGACAG 57.099 37.500 0.00 0.00 34.35 3.51
2295 2554 1.372582 GATGATTCTGGCACTCGCAA 58.627 50.000 0.00 0.00 41.24 4.85
2512 2777 1.396653 GCATTGCTGGTATTGGAGCT 58.603 50.000 0.16 0.00 36.11 4.09
2568 2833 1.179814 AGACGTTCTGAACCCGAGCT 61.180 55.000 14.48 0.00 0.00 4.09
2680 2945 3.322466 CTGTCGGTGCCCCTTCCT 61.322 66.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.175816 TCCATTTTGATGACAACTATTTTCGGA 59.824 33.333 0.00 0.00 35.63 4.55
1 2 7.312154 TCCATTTTGATGACAACTATTTTCGG 58.688 34.615 0.00 0.00 35.63 4.30
2 3 8.915871 ATCCATTTTGATGACAACTATTTTCG 57.084 30.769 0.00 0.00 35.63 3.46
68 69 8.395633 GCACTTTCGGTGTATCTAAACATATTT 58.604 33.333 0.00 0.00 46.86 1.40
69 70 7.769044 AGCACTTTCGGTGTATCTAAACATATT 59.231 33.333 0.00 0.00 46.86 1.28
70 71 7.272978 AGCACTTTCGGTGTATCTAAACATAT 58.727 34.615 0.00 0.00 46.86 1.78
71 72 6.636705 AGCACTTTCGGTGTATCTAAACATA 58.363 36.000 0.00 0.00 46.86 2.29
72 73 5.488341 AGCACTTTCGGTGTATCTAAACAT 58.512 37.500 0.00 0.00 46.86 2.71
73 74 4.890088 AGCACTTTCGGTGTATCTAAACA 58.110 39.130 0.00 0.00 46.86 2.83
74 75 7.064253 ACAATAGCACTTTCGGTGTATCTAAAC 59.936 37.037 0.00 0.00 46.86 2.01
75 76 7.064134 CACAATAGCACTTTCGGTGTATCTAAA 59.936 37.037 0.00 0.00 46.86 1.85
76 77 6.533723 CACAATAGCACTTTCGGTGTATCTAA 59.466 38.462 0.00 0.00 46.86 2.10
77 78 6.040247 CACAATAGCACTTTCGGTGTATCTA 58.960 40.000 0.00 0.00 46.86 1.98
78 79 4.870426 CACAATAGCACTTTCGGTGTATCT 59.130 41.667 0.00 0.00 46.86 1.98
79 80 4.868171 TCACAATAGCACTTTCGGTGTATC 59.132 41.667 0.00 0.00 46.86 2.24
80 81 4.827692 TCACAATAGCACTTTCGGTGTAT 58.172 39.130 0.00 0.00 46.86 2.29
81 82 4.242475 CTCACAATAGCACTTTCGGTGTA 58.758 43.478 0.00 0.00 46.86 2.90
82 83 3.067106 CTCACAATAGCACTTTCGGTGT 58.933 45.455 0.00 0.00 46.86 4.16
83 84 4.415828 AGCTCACAATAGCACTTTCGGTG 61.416 47.826 0.00 0.00 45.30 4.94
84 85 2.076863 GCTCACAATAGCACTTTCGGT 58.923 47.619 0.00 0.00 42.30 4.69
85 86 2.349886 GAGCTCACAATAGCACTTTCGG 59.650 50.000 9.40 0.00 45.30 4.30
86 87 2.028523 CGAGCTCACAATAGCACTTTCG 59.971 50.000 15.40 0.00 45.30 3.46
87 88 3.254060 TCGAGCTCACAATAGCACTTTC 58.746 45.455 15.40 0.00 45.30 2.62
88 89 3.257393 CTCGAGCTCACAATAGCACTTT 58.743 45.455 15.40 0.00 45.30 2.66
89 90 2.886081 CTCGAGCTCACAATAGCACTT 58.114 47.619 15.40 0.00 45.30 3.16
90 91 1.470632 GCTCGAGCTCACAATAGCACT 60.471 52.381 29.88 0.00 45.30 4.40
91 92 0.926846 GCTCGAGCTCACAATAGCAC 59.073 55.000 29.88 0.00 45.30 4.40
92 93 3.352447 GCTCGAGCTCACAATAGCA 57.648 52.632 29.88 0.00 45.30 3.49
103 104 2.813042 GTGCCTGTGAGCTCGAGC 60.813 66.667 30.01 30.01 42.49 5.03
104 105 2.125753 GGTGCCTGTGAGCTCGAG 60.126 66.667 8.45 8.45 0.00 4.04
105 106 3.695606 GGGTGCCTGTGAGCTCGA 61.696 66.667 9.64 0.00 0.00 4.04
106 107 2.738213 AAAGGGTGCCTGTGAGCTCG 62.738 60.000 9.64 0.00 32.13 5.03
107 108 1.073897 AAAGGGTGCCTGTGAGCTC 59.926 57.895 6.82 6.82 32.13 4.09
108 109 1.228367 CAAAGGGTGCCTGTGAGCT 60.228 57.895 0.00 0.00 41.22 4.09
109 110 3.359002 CAAAGGGTGCCTGTGAGC 58.641 61.111 0.00 0.00 41.22 4.26
118 119 3.880490 TGTTTGTACTGTAGCAAAGGGTG 59.120 43.478 12.57 0.00 35.58 4.61
119 120 4.159244 TGTTTGTACTGTAGCAAAGGGT 57.841 40.909 12.57 0.00 35.58 4.34
120 121 5.508200 TTTGTTTGTACTGTAGCAAAGGG 57.492 39.130 12.57 0.00 35.58 3.95
121 122 7.254852 TCTTTTTGTTTGTACTGTAGCAAAGG 58.745 34.615 12.57 8.13 35.58 3.11
122 123 8.682128 TTCTTTTTGTTTGTACTGTAGCAAAG 57.318 30.769 12.57 0.00 35.58 2.77
177 178 7.798596 ATATGTCAATGTTTGTTGCCAAAAA 57.201 28.000 0.00 0.00 41.99 1.94
178 179 7.798596 AATATGTCAATGTTTGTTGCCAAAA 57.201 28.000 0.00 0.00 41.99 2.44
179 180 7.798596 AAATATGTCAATGTTTGTTGCCAAA 57.201 28.000 0.00 0.00 38.22 3.28
180 181 7.798596 AAAATATGTCAATGTTTGTTGCCAA 57.201 28.000 0.00 0.00 28.64 4.52
181 182 7.496920 TGAAAAATATGTCAATGTTTGTTGCCA 59.503 29.630 0.00 0.00 28.64 4.92
182 183 7.798052 GTGAAAAATATGTCAATGTTTGTTGCC 59.202 33.333 0.00 0.00 28.64 4.52
183 184 8.333908 TGTGAAAAATATGTCAATGTTTGTTGC 58.666 29.630 0.00 0.00 28.64 4.17
186 187 8.497554 GCATGTGAAAAATATGTCAATGTTTGT 58.502 29.630 0.00 0.00 28.64 2.83
187 188 7.684897 CGCATGTGAAAAATATGTCAATGTTTG 59.315 33.333 0.00 0.00 28.64 2.93
188 189 7.384660 ACGCATGTGAAAAATATGTCAATGTTT 59.615 29.630 14.43 0.00 0.00 2.83
189 190 6.867816 ACGCATGTGAAAAATATGTCAATGTT 59.132 30.769 14.43 0.00 0.00 2.71
190 191 6.389091 ACGCATGTGAAAAATATGTCAATGT 58.611 32.000 14.43 0.00 0.00 2.71
191 192 6.874297 ACGCATGTGAAAAATATGTCAATG 57.126 33.333 14.43 0.00 0.00 2.82
192 193 7.534282 TGTACGCATGTGAAAAATATGTCAAT 58.466 30.769 14.43 0.00 0.00 2.57
193 194 6.903419 TGTACGCATGTGAAAAATATGTCAA 58.097 32.000 14.43 0.00 0.00 3.18
194 195 6.487689 TGTACGCATGTGAAAAATATGTCA 57.512 33.333 14.43 0.00 0.00 3.58
195 196 7.789341 TTTGTACGCATGTGAAAAATATGTC 57.211 32.000 14.43 0.00 0.00 3.06
196 197 8.755696 AATTTGTACGCATGTGAAAAATATGT 57.244 26.923 14.43 0.00 0.00 2.29
199 200 9.249457 TGAAAATTTGTACGCATGTGAAAAATA 57.751 25.926 14.43 0.00 0.00 1.40
200 201 8.136057 TGAAAATTTGTACGCATGTGAAAAAT 57.864 26.923 14.43 11.95 0.00 1.82
201 202 7.525688 TGAAAATTTGTACGCATGTGAAAAA 57.474 28.000 14.43 10.24 0.00 1.94
202 203 7.436376 TCATGAAAATTTGTACGCATGTGAAAA 59.564 29.630 14.43 10.58 35.75 2.29
203 204 6.920210 TCATGAAAATTTGTACGCATGTGAAA 59.080 30.769 14.43 3.59 35.75 2.69
204 205 6.362016 GTCATGAAAATTTGTACGCATGTGAA 59.638 34.615 14.43 0.00 35.75 3.18
205 206 5.855925 GTCATGAAAATTTGTACGCATGTGA 59.144 36.000 14.43 0.00 35.75 3.58
206 207 5.628606 TGTCATGAAAATTTGTACGCATGTG 59.371 36.000 4.30 4.30 35.75 3.21
207 208 5.767269 TGTCATGAAAATTTGTACGCATGT 58.233 33.333 0.00 0.00 35.75 3.21
208 209 6.687653 TTGTCATGAAAATTTGTACGCATG 57.312 33.333 0.00 0.00 35.63 4.06
209 210 7.706281 TTTTGTCATGAAAATTTGTACGCAT 57.294 28.000 0.00 0.00 0.00 4.73
210 211 7.436376 TCATTTTGTCATGAAAATTTGTACGCA 59.564 29.630 0.00 0.00 34.05 5.24
211 212 7.735586 GTCATTTTGTCATGAAAATTTGTACGC 59.264 33.333 0.00 0.00 34.05 4.42
212 213 8.750416 TGTCATTTTGTCATGAAAATTTGTACG 58.250 29.630 0.00 0.00 34.05 3.67
219 220 9.496873 ACATGAATGTCATTTTGTCATGAAAAT 57.503 25.926 23.13 0.00 45.44 1.82
220 221 8.890124 ACATGAATGTCATTTTGTCATGAAAA 57.110 26.923 23.13 0.00 45.44 2.29
221 222 9.628746 CTACATGAATGTCATTTTGTCATGAAA 57.371 29.630 23.13 13.80 45.44 2.69
222 223 8.245491 CCTACATGAATGTCATTTTGTCATGAA 58.755 33.333 23.13 6.88 45.44 2.57
223 224 7.394077 ACCTACATGAATGTCATTTTGTCATGA 59.606 33.333 23.13 11.55 45.44 3.07
225 226 7.613022 AGACCTACATGAATGTCATTTTGTCAT 59.387 33.333 14.78 5.45 41.97 3.06
226 227 6.942005 AGACCTACATGAATGTCATTTTGTCA 59.058 34.615 14.78 3.55 41.97 3.58
227 228 7.119699 TGAGACCTACATGAATGTCATTTTGTC 59.880 37.037 14.78 7.93 41.97 3.18
228 229 6.942005 TGAGACCTACATGAATGTCATTTTGT 59.058 34.615 15.37 15.37 41.97 2.83
229 230 7.381766 TGAGACCTACATGAATGTCATTTTG 57.618 36.000 0.00 4.03 41.97 2.44
230 231 6.094603 GCTGAGACCTACATGAATGTCATTTT 59.905 38.462 0.00 0.00 41.97 1.82
231 232 5.587844 GCTGAGACCTACATGAATGTCATTT 59.412 40.000 0.00 0.00 41.97 2.32
232 233 5.121811 GCTGAGACCTACATGAATGTCATT 58.878 41.667 0.00 0.00 41.97 2.57
233 234 4.162888 TGCTGAGACCTACATGAATGTCAT 59.837 41.667 0.00 0.00 41.97 3.06
234 235 3.515104 TGCTGAGACCTACATGAATGTCA 59.485 43.478 0.00 0.00 41.97 3.58
235 236 4.128925 TGCTGAGACCTACATGAATGTC 57.871 45.455 0.00 2.36 41.97 3.06
236 237 4.558226 TTGCTGAGACCTACATGAATGT 57.442 40.909 0.00 0.95 44.48 2.71
237 238 5.885230 TTTTGCTGAGACCTACATGAATG 57.115 39.130 0.00 0.00 0.00 2.67
260 261 7.376601 GCATTTTTGAGCATCGATTTTGTTTTT 59.623 29.630 0.00 0.00 38.61 1.94
261 262 6.852345 GCATTTTTGAGCATCGATTTTGTTTT 59.148 30.769 0.00 0.00 38.61 2.43
262 263 6.203338 AGCATTTTTGAGCATCGATTTTGTTT 59.797 30.769 0.00 0.00 38.61 2.83
263 264 5.697633 AGCATTTTTGAGCATCGATTTTGTT 59.302 32.000 0.00 0.00 38.61 2.83
264 265 5.232463 AGCATTTTTGAGCATCGATTTTGT 58.768 33.333 0.00 0.00 38.61 2.83
265 266 5.773239 AGCATTTTTGAGCATCGATTTTG 57.227 34.783 0.00 0.00 38.61 2.44
266 267 5.349543 GGAAGCATTTTTGAGCATCGATTTT 59.650 36.000 0.00 0.00 38.61 1.82
267 268 4.866486 GGAAGCATTTTTGAGCATCGATTT 59.134 37.500 0.00 0.00 38.61 2.17
268 269 4.082081 TGGAAGCATTTTTGAGCATCGATT 60.082 37.500 0.00 0.00 38.61 3.34
269 270 3.444742 TGGAAGCATTTTTGAGCATCGAT 59.555 39.130 0.00 0.00 38.61 3.59
270 271 2.819019 TGGAAGCATTTTTGAGCATCGA 59.181 40.909 0.00 0.00 38.61 3.59
271 272 3.220507 TGGAAGCATTTTTGAGCATCG 57.779 42.857 0.00 0.00 38.61 3.84
272 273 5.927954 TTTTGGAAGCATTTTTGAGCATC 57.072 34.783 0.00 0.00 0.00 3.91
273 274 5.589452 TGTTTTTGGAAGCATTTTTGAGCAT 59.411 32.000 0.00 0.00 0.00 3.79
274 275 4.940046 TGTTTTTGGAAGCATTTTTGAGCA 59.060 33.333 0.00 0.00 0.00 4.26
275 276 5.065090 ACTGTTTTTGGAAGCATTTTTGAGC 59.935 36.000 0.00 0.00 0.00 4.26
276 277 6.667007 ACTGTTTTTGGAAGCATTTTTGAG 57.333 33.333 0.00 0.00 0.00 3.02
277 278 7.446001 AAACTGTTTTTGGAAGCATTTTTGA 57.554 28.000 0.00 0.00 29.10 2.69
278 279 8.518151 AAAAACTGTTTTTGGAAGCATTTTTG 57.482 26.923 25.58 0.00 41.04 2.44
326 327 3.360867 ACATTTGTGGAGGTGTCAACAA 58.639 40.909 0.00 0.00 43.73 2.83
327 328 2.948979 GACATTTGTGGAGGTGTCAACA 59.051 45.455 0.00 0.00 40.41 3.33
328 329 2.948979 TGACATTTGTGGAGGTGTCAAC 59.051 45.455 4.72 0.00 45.50 3.18
329 330 3.289407 TGACATTTGTGGAGGTGTCAA 57.711 42.857 4.72 0.00 45.50 3.18
331 332 4.278170 TGAAATGACATTTGTGGAGGTGTC 59.722 41.667 18.00 0.67 40.93 3.67
332 333 4.214310 TGAAATGACATTTGTGGAGGTGT 58.786 39.130 18.00 0.00 31.47 4.16
333 334 4.852134 TGAAATGACATTTGTGGAGGTG 57.148 40.909 18.00 0.00 31.47 4.00
334 335 5.047802 GTGATGAAATGACATTTGTGGAGGT 60.048 40.000 18.00 0.00 27.82 3.85
335 336 5.404946 GTGATGAAATGACATTTGTGGAGG 58.595 41.667 18.00 0.00 27.82 4.30
336 337 5.090757 CGTGATGAAATGACATTTGTGGAG 58.909 41.667 18.00 2.09 25.53 3.86
337 338 4.759183 TCGTGATGAAATGACATTTGTGGA 59.241 37.500 18.00 4.36 25.53 4.02
338 339 5.045668 TCGTGATGAAATGACATTTGTGG 57.954 39.130 18.00 2.26 25.53 4.17
339 340 6.989796 TTTCGTGATGAAATGACATTTGTG 57.010 33.333 18.00 2.12 41.59 3.33
340 341 8.489559 CAATTTTCGTGATGAAATGACATTTGT 58.510 29.630 18.00 6.62 45.62 2.83
341 342 7.953173 CCAATTTTCGTGATGAAATGACATTTG 59.047 33.333 18.00 3.05 45.62 2.32
342 343 7.360269 GCCAATTTTCGTGATGAAATGACATTT 60.360 33.333 13.24 13.24 45.62 2.32
343 344 6.091169 GCCAATTTTCGTGATGAAATGACATT 59.909 34.615 0.02 0.00 45.62 2.71
344 345 5.577945 GCCAATTTTCGTGATGAAATGACAT 59.422 36.000 0.02 0.00 45.62 3.06
345 346 4.922692 GCCAATTTTCGTGATGAAATGACA 59.077 37.500 0.02 0.00 45.62 3.58
346 347 4.922692 TGCCAATTTTCGTGATGAAATGAC 59.077 37.500 0.02 0.00 45.62 3.06
347 348 4.922692 GTGCCAATTTTCGTGATGAAATGA 59.077 37.500 0.02 0.00 45.62 2.57
348 349 4.201513 CGTGCCAATTTTCGTGATGAAATG 60.202 41.667 0.02 0.00 45.62 2.32
349 350 3.919804 CGTGCCAATTTTCGTGATGAAAT 59.080 39.130 0.02 0.00 45.62 2.17
350 351 3.304257 CGTGCCAATTTTCGTGATGAAA 58.696 40.909 0.00 0.00 44.70 2.69
351 352 2.920227 GCGTGCCAATTTTCGTGATGAA 60.920 45.455 0.00 0.00 33.85 2.57
352 353 1.400888 GCGTGCCAATTTTCGTGATGA 60.401 47.619 0.00 0.00 0.00 2.92
353 354 0.984109 GCGTGCCAATTTTCGTGATG 59.016 50.000 0.00 0.00 0.00 3.07
354 355 0.595588 TGCGTGCCAATTTTCGTGAT 59.404 45.000 0.00 0.00 0.00 3.06
355 356 0.595588 ATGCGTGCCAATTTTCGTGA 59.404 45.000 0.00 0.00 0.00 4.35
356 357 0.709467 CATGCGTGCCAATTTTCGTG 59.291 50.000 0.00 0.00 0.00 4.35
357 358 0.313672 ACATGCGTGCCAATTTTCGT 59.686 45.000 5.64 0.00 0.00 3.85
358 359 2.159585 TCTACATGCGTGCCAATTTTCG 60.160 45.455 5.64 0.00 0.00 3.46
359 360 3.485947 TCTACATGCGTGCCAATTTTC 57.514 42.857 5.64 0.00 0.00 2.29
360 361 3.932545 TTCTACATGCGTGCCAATTTT 57.067 38.095 5.64 0.00 0.00 1.82
361 362 3.932545 TTTCTACATGCGTGCCAATTT 57.067 38.095 5.64 0.00 0.00 1.82
362 363 3.932545 TTTTCTACATGCGTGCCAATT 57.067 38.095 5.64 0.00 0.00 2.32
363 364 3.932545 TTTTTCTACATGCGTGCCAAT 57.067 38.095 5.64 0.00 0.00 3.16
443 444 3.881220 TCCCGGATGAACAGTAAAATCC 58.119 45.455 0.73 0.00 36.10 3.01
444 445 5.007724 GTGATCCCGGATGAACAGTAAAATC 59.992 44.000 4.08 0.00 0.00 2.17
445 446 4.881850 GTGATCCCGGATGAACAGTAAAAT 59.118 41.667 4.08 0.00 0.00 1.82
446 447 4.019681 AGTGATCCCGGATGAACAGTAAAA 60.020 41.667 4.08 0.00 0.00 1.52
447 448 3.517901 AGTGATCCCGGATGAACAGTAAA 59.482 43.478 4.08 0.00 0.00 2.01
448 449 3.104512 AGTGATCCCGGATGAACAGTAA 58.895 45.455 4.08 0.00 0.00 2.24
449 450 2.430694 CAGTGATCCCGGATGAACAGTA 59.569 50.000 4.08 0.00 0.00 2.74
450 451 1.208052 CAGTGATCCCGGATGAACAGT 59.792 52.381 4.08 0.00 0.00 3.55
451 452 1.473965 CCAGTGATCCCGGATGAACAG 60.474 57.143 4.08 0.31 0.00 3.16
452 453 0.541392 CCAGTGATCCCGGATGAACA 59.459 55.000 4.08 0.00 0.00 3.18
453 454 0.541863 ACCAGTGATCCCGGATGAAC 59.458 55.000 4.08 3.21 0.00 3.18
454 455 0.541392 CACCAGTGATCCCGGATGAA 59.459 55.000 4.08 0.00 0.00 2.57
455 456 1.971505 GCACCAGTGATCCCGGATGA 61.972 60.000 4.08 0.00 0.00 2.92
456 457 1.524621 GCACCAGTGATCCCGGATG 60.525 63.158 4.08 0.00 0.00 3.51
457 458 2.746375 GGCACCAGTGATCCCGGAT 61.746 63.158 0.73 0.00 0.00 4.18
458 459 3.399181 GGCACCAGTGATCCCGGA 61.399 66.667 0.73 0.00 0.00 5.14
469 470 2.566111 GGAATTGATCCCGGGCACCA 62.566 60.000 18.49 10.61 46.42 4.17
470 471 1.828224 GGAATTGATCCCGGGCACC 60.828 63.158 18.49 7.70 43.00 5.01
471 472 3.841870 GGAATTGATCCCGGGCAC 58.158 61.111 18.49 12.93 43.00 5.01
479 480 0.105039 AGGACGCGGAGGAATTGATC 59.895 55.000 12.47 0.00 0.00 2.92
480 481 1.341531 CTAGGACGCGGAGGAATTGAT 59.658 52.381 12.47 0.00 0.00 2.57
481 482 0.744874 CTAGGACGCGGAGGAATTGA 59.255 55.000 12.47 0.00 0.00 2.57
482 483 0.744874 TCTAGGACGCGGAGGAATTG 59.255 55.000 12.47 0.00 0.00 2.32
483 484 1.705873 ATCTAGGACGCGGAGGAATT 58.294 50.000 12.47 0.00 0.00 2.17
484 485 2.161030 GTATCTAGGACGCGGAGGAAT 58.839 52.381 12.47 0.00 0.00 3.01
485 486 1.134007 TGTATCTAGGACGCGGAGGAA 60.134 52.381 12.47 0.00 0.00 3.36
486 487 0.471191 TGTATCTAGGACGCGGAGGA 59.529 55.000 12.47 1.22 0.00 3.71
487 488 1.469308 GATGTATCTAGGACGCGGAGG 59.531 57.143 12.47 0.00 0.00 4.30
488 489 1.469308 GGATGTATCTAGGACGCGGAG 59.531 57.143 12.47 1.75 0.00 4.63
489 490 1.073444 AGGATGTATCTAGGACGCGGA 59.927 52.381 12.47 0.00 0.00 5.54
490 491 1.535833 AGGATGTATCTAGGACGCGG 58.464 55.000 12.47 0.00 0.00 6.46
491 492 3.644884 AAAGGATGTATCTAGGACGCG 57.355 47.619 3.53 3.53 0.00 6.01
492 493 6.590677 GGATAAAAAGGATGTATCTAGGACGC 59.409 42.308 0.00 0.00 0.00 5.19
493 494 7.667557 TGGATAAAAAGGATGTATCTAGGACG 58.332 38.462 0.00 0.00 0.00 4.79
503 504 8.814931 TGTCATCAAAATGGATAAAAAGGATGT 58.185 29.630 0.00 0.00 33.29 3.06
504 505 9.656040 TTGTCATCAAAATGGATAAAAAGGATG 57.344 29.630 0.00 0.00 33.42 3.51
505 506 9.880157 CTTGTCATCAAAATGGATAAAAAGGAT 57.120 29.630 0.00 0.00 33.42 3.24
506 507 8.869109 ACTTGTCATCAAAATGGATAAAAAGGA 58.131 29.630 0.00 0.00 33.42 3.36
514 515 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
515 516 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
516 517 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
517 518 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
518 519 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
519 520 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
520 521 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
521 522 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
522 523 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
523 524 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
524 525 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
525 526 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
526 527 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
527 528 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
528 529 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
529 530 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
530 531 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
531 532 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
532 533 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
533 534 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
538 539 2.847327 TATAGTACTCCCTCCGTCCG 57.153 55.000 0.00 0.00 0.00 4.79
577 588 2.613506 GCGAAACCCAGACCAACGG 61.614 63.158 0.00 0.00 0.00 4.44
580 591 0.953471 CATCGCGAAACCCAGACCAA 60.953 55.000 15.24 0.00 0.00 3.67
593 604 1.205820 CATGGTATGCAGCATCGCG 59.794 57.895 12.38 0.00 40.90 5.87
638 652 2.294078 CCTGACCCTGACCCTGACC 61.294 68.421 0.00 0.00 0.00 4.02
639 653 2.294078 CCCTGACCCTGACCCTGAC 61.294 68.421 0.00 0.00 0.00 3.51
640 654 2.122729 CCCTGACCCTGACCCTGA 59.877 66.667 0.00 0.00 0.00 3.86
641 655 2.203998 ACCCTGACCCTGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
642 656 2.122954 GACCCTGACCCTGACCCT 59.877 66.667 0.00 0.00 0.00 4.34
643 657 2.203938 TGACCCTGACCCTGACCC 60.204 66.667 0.00 0.00 0.00 4.46
677 691 1.271325 ACTGAAACATGCATGTCCCGA 60.271 47.619 31.45 15.09 40.80 5.14
721 735 4.932591 CGCACGATCGCTGCATGC 62.933 66.667 28.93 23.12 34.00 4.06
748 762 0.833834 CTCCGGCATCTCCTATGGGT 60.834 60.000 0.00 0.00 0.00 4.51
754 768 1.118838 CTTCTTCTCCGGCATCTCCT 58.881 55.000 0.00 0.00 0.00 3.69
835 854 4.276183 GGAAGAAACCCTTTCACAGAAGAC 59.724 45.833 0.00 0.00 42.10 3.01
940 964 1.661821 GTAGCTGGCGAGTATGCGG 60.662 63.158 0.00 0.00 35.06 5.69
941 965 0.319040 ATGTAGCTGGCGAGTATGCG 60.319 55.000 0.00 0.00 35.06 4.73
968 992 3.138304 TGCTGAATAACTTGTTGCGTCT 58.862 40.909 0.00 0.00 0.00 4.18
987 1011 1.440476 GGCCATGGCTGATTTCTGC 59.560 57.895 34.70 12.27 41.60 4.26
1123 1156 9.988815 CAGCAAAGAAGAGGTACTAATATATGT 57.011 33.333 0.00 0.00 41.55 2.29
1126 1159 9.422681 AGTCAGCAAAGAAGAGGTACTAATATA 57.577 33.333 0.00 0.00 41.55 0.86
1151 1184 1.434622 ATGCGATGCGGCTGAAGAAG 61.435 55.000 0.00 0.00 0.00 2.85
1157 1190 2.466982 AACTCATGCGATGCGGCTG 61.467 57.895 0.00 0.00 0.00 4.85
1158 1191 2.124983 AACTCATGCGATGCGGCT 60.125 55.556 0.00 0.00 0.00 5.52
1178 1211 5.154418 TCCATGATCCCGGCATATGATATA 58.846 41.667 6.97 0.00 0.00 0.86
1179 1212 3.975982 TCCATGATCCCGGCATATGATAT 59.024 43.478 6.97 0.00 0.00 1.63
1180 1213 3.383223 TCCATGATCCCGGCATATGATA 58.617 45.455 6.97 0.00 0.00 2.15
1181 1214 2.199208 TCCATGATCCCGGCATATGAT 58.801 47.619 6.97 0.00 0.00 2.45
1182 1215 1.655372 TCCATGATCCCGGCATATGA 58.345 50.000 6.97 0.00 0.00 2.15
1183 1216 2.092807 TGATCCATGATCCCGGCATATG 60.093 50.000 0.00 0.00 38.20 1.78
1192 1225 2.928334 ACACAAGCTGATCCATGATCC 58.072 47.619 0.00 0.00 38.20 3.36
1193 1226 3.943381 TCAACACAAGCTGATCCATGATC 59.057 43.478 0.00 0.00 39.31 2.92
1194 1227 3.959293 TCAACACAAGCTGATCCATGAT 58.041 40.909 0.00 0.00 0.00 2.45
1195 1228 3.421919 TCAACACAAGCTGATCCATGA 57.578 42.857 0.00 0.00 0.00 3.07
1196 1229 4.713824 AATCAACACAAGCTGATCCATG 57.286 40.909 0.00 0.00 29.57 3.66
1197 1230 5.948162 ACTAAATCAACACAAGCTGATCCAT 59.052 36.000 0.00 0.00 29.57 3.41
1198 1231 5.316167 ACTAAATCAACACAAGCTGATCCA 58.684 37.500 0.00 0.00 29.57 3.41
1507 1552 1.066502 GTCTTCCTTGTCTCCTGCTCC 60.067 57.143 0.00 0.00 0.00 4.70
1527 1572 0.111089 GCTGTTTCTGCACGTTCTCG 60.111 55.000 0.00 0.00 43.34 4.04
1575 1620 1.154205 CGAGGCGGGCACTATCTTTG 61.154 60.000 3.78 0.00 0.00 2.77
1577 1622 1.115930 ATCGAGGCGGGCACTATCTT 61.116 55.000 3.78 0.00 0.00 2.40
1578 1623 1.528292 GATCGAGGCGGGCACTATCT 61.528 60.000 3.78 0.00 0.00 1.98
1579 1624 1.080434 GATCGAGGCGGGCACTATC 60.080 63.158 3.78 0.86 0.00 2.08
1580 1625 1.399744 TTGATCGAGGCGGGCACTAT 61.400 55.000 3.78 0.00 0.00 2.12
1581 1626 2.016393 CTTGATCGAGGCGGGCACTA 62.016 60.000 3.78 0.00 0.00 2.74
1582 1627 3.376935 CTTGATCGAGGCGGGCACT 62.377 63.158 3.78 0.00 0.00 4.40
1583 1628 2.892425 CTTGATCGAGGCGGGCAC 60.892 66.667 3.78 0.00 0.00 5.01
1584 1629 4.161295 CCTTGATCGAGGCGGGCA 62.161 66.667 16.37 0.00 0.00 5.36
1585 1630 3.849951 TCCTTGATCGAGGCGGGC 61.850 66.667 22.79 0.00 36.71 6.13
1586 1631 2.107141 GTCCTTGATCGAGGCGGG 59.893 66.667 22.79 1.86 36.71 6.13
1587 1632 0.807667 CTTGTCCTTGATCGAGGCGG 60.808 60.000 22.79 11.31 36.71 6.13
1588 1633 0.173481 TCTTGTCCTTGATCGAGGCG 59.827 55.000 22.79 11.43 36.71 5.52
1589 1634 2.611225 ATCTTGTCCTTGATCGAGGC 57.389 50.000 22.79 17.61 36.71 4.70
1590 1635 4.500545 CCACTATCTTGTCCTTGATCGAGG 60.501 50.000 21.75 21.75 38.20 4.63
1591 1636 4.615949 CCACTATCTTGTCCTTGATCGAG 58.384 47.826 2.59 2.59 0.00 4.04
1592 1637 3.181475 GCCACTATCTTGTCCTTGATCGA 60.181 47.826 0.00 0.00 0.00 3.59
1593 1638 3.126831 GCCACTATCTTGTCCTTGATCG 58.873 50.000 0.00 0.00 0.00 3.69
1594 1639 3.471680 GGCCACTATCTTGTCCTTGATC 58.528 50.000 0.00 0.00 0.00 2.92
1595 1640 2.158900 CGGCCACTATCTTGTCCTTGAT 60.159 50.000 2.24 0.00 0.00 2.57
1596 1641 1.207089 CGGCCACTATCTTGTCCTTGA 59.793 52.381 2.24 0.00 0.00 3.02
1597 1642 1.656652 CGGCCACTATCTTGTCCTTG 58.343 55.000 2.24 0.00 0.00 3.61
1598 1643 0.107654 GCGGCCACTATCTTGTCCTT 60.108 55.000 2.24 0.00 0.00 3.36
1599 1644 1.522569 GCGGCCACTATCTTGTCCT 59.477 57.895 2.24 0.00 0.00 3.85
1600 1645 1.523938 GGCGGCCACTATCTTGTCC 60.524 63.158 15.62 0.00 0.00 4.02
1601 1646 0.107654 AAGGCGGCCACTATCTTGTC 60.108 55.000 23.09 0.00 0.00 3.18
1602 1647 0.392998 CAAGGCGGCCACTATCTTGT 60.393 55.000 23.09 0.00 32.59 3.16
1603 1648 0.107703 TCAAGGCGGCCACTATCTTG 60.108 55.000 23.09 15.31 36.95 3.02
1678 1723 3.896133 GTATCCGCGGCCTGACGA 61.896 66.667 23.51 0.16 35.47 4.20
1767 1812 3.558829 CGAAGCTGTACCTGACGTAGATA 59.441 47.826 0.00 0.00 0.00 1.98
1810 1855 0.165511 GACGTCGAGTAGTCAACGCT 59.834 55.000 10.91 0.00 38.64 5.07
1812 1857 1.458445 TCTGACGTCGAGTAGTCAACG 59.542 52.381 9.47 9.47 45.36 4.10
1953 2035 2.787473 AAGGAAGCCGTCATGATTCA 57.213 45.000 0.00 0.00 0.00 2.57
1954 2036 5.049818 CAGATTAAGGAAGCCGTCATGATTC 60.050 44.000 0.00 0.00 0.00 2.52
1955 2037 4.818546 CAGATTAAGGAAGCCGTCATGATT 59.181 41.667 0.00 0.00 0.00 2.57
1970 2052 7.277981 GTGAGTACATGTTGGTACCAGATTAAG 59.722 40.741 15.65 7.10 43.66 1.85
1993 2075 7.085476 AGAGTGCTTATATAGAGAGAGGTGA 57.915 40.000 0.00 0.00 0.00 4.02
1994 2076 7.759489 AAGAGTGCTTATATAGAGAGAGGTG 57.241 40.000 0.00 0.00 31.07 4.00
2015 2237 8.540507 ACTAGAGCAGAGGATTTGTTATAAGA 57.459 34.615 0.00 0.00 0.00 2.10
2120 2342 6.013379 TGGTGATTTGAGGGCTGTAAATTTA 58.987 36.000 0.00 0.00 0.00 1.40
2130 2352 5.537674 AGAATTATGATGGTGATTTGAGGGC 59.462 40.000 0.00 0.00 0.00 5.19
2199 2431 8.950007 TGTCTTCCCTAAAAAGGACAAATAAT 57.050 30.769 0.00 0.00 31.50 1.28
2200 2432 8.002459 ACTGTCTTCCCTAAAAAGGACAAATAA 58.998 33.333 0.00 0.00 31.50 1.40
2201 2433 7.523415 ACTGTCTTCCCTAAAAAGGACAAATA 58.477 34.615 0.00 0.00 31.50 1.40
2202 2434 6.373759 ACTGTCTTCCCTAAAAAGGACAAAT 58.626 36.000 0.00 0.00 31.50 2.32
2203 2435 5.762279 ACTGTCTTCCCTAAAAAGGACAAA 58.238 37.500 0.00 0.00 31.50 2.83
2204 2436 5.382664 ACTGTCTTCCCTAAAAAGGACAA 57.617 39.130 0.00 0.00 31.50 3.18
2205 2437 5.382664 AACTGTCTTCCCTAAAAAGGACA 57.617 39.130 0.00 0.00 31.50 4.02
2206 2438 7.997773 ATAAACTGTCTTCCCTAAAAAGGAC 57.002 36.000 0.00 0.00 31.50 3.85
2207 2439 8.856103 CAAATAAACTGTCTTCCCTAAAAAGGA 58.144 33.333 0.00 0.00 0.00 3.36
2208 2440 8.638873 ACAAATAAACTGTCTTCCCTAAAAAGG 58.361 33.333 0.00 0.00 0.00 3.11
2209 2441 9.678941 GACAAATAAACTGTCTTCCCTAAAAAG 57.321 33.333 0.00 0.00 40.10 2.27
2210 2442 9.191479 TGACAAATAAACTGTCTTCCCTAAAAA 57.809 29.630 4.74 0.00 43.03 1.94
2211 2443 8.754991 TGACAAATAAACTGTCTTCCCTAAAA 57.245 30.769 4.74 0.00 43.03 1.52
2212 2444 8.215050 TCTGACAAATAAACTGTCTTCCCTAAA 58.785 33.333 4.74 0.00 43.03 1.85
2213 2445 7.741785 TCTGACAAATAAACTGTCTTCCCTAA 58.258 34.615 4.74 0.00 43.03 2.69
2214 2446 7.311092 TCTGACAAATAAACTGTCTTCCCTA 57.689 36.000 4.74 0.00 43.03 3.53
2215 2447 6.187727 TCTGACAAATAAACTGTCTTCCCT 57.812 37.500 4.74 0.00 43.03 4.20
2216 2448 6.877611 TTCTGACAAATAAACTGTCTTCCC 57.122 37.500 4.74 0.00 43.03 3.97
2295 2554 2.365582 AGAAATGCGGGCTTTCGTTAT 58.634 42.857 8.73 0.00 37.62 1.89
2415 2680 4.212913 GCGCGAGATCTCCAGGCA 62.213 66.667 17.13 0.00 0.00 4.75
2568 2833 1.075970 CCTCCTCTGTCGGGGATCA 60.076 63.158 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.