>input_sequence_68529
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---------------------------------------------------------------ATG---------GCCGC
CATCGCAGGCCGCGCGTACGAGGACTTCGTGCCGCCGCACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCG
ATCTCACCGCCGCAGGCACGCACCGCAACCCCCCTACATATATTAGTACCTCTTCTTTGCTGACTTCTTCAGCCGCATCG
CATGAGTTGTTATATCATATGCCGGGATCATGGATCAGCTTGTGTTGATTTAGTTAGTACGATGTGCCGATTGCAGGGTA
CAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCCACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCA
ACCGCTGGAGCCGCTTCCGCCTCGAGTTCCGCGTGCCCGACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGC
GGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACC---------GC---GGTCGGCGACGTCTCTGGTAAGCAGGTGCC
CCCGGCGGCCAAGGCTGATGCTTCCGGCGTTGGAGCAGGAGACAAGGAAGACGAGAACGTGCAGAAACAGCCGGCGGAGG
AGCGCGGGGCCGACGCGGTCAAAGATAGTGCCCGCCTCGATCAAGGACAAGATAGTGGCCGCCTTGATCAAGGACAAGGT
ACCCCTGCCGACGGCGTCCGGGGAGTGGAGTCGCCGGCGACGTCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAG
AAAGCTTGTGACCACCGTGGTTGGCGCGGTGCTCGTCCTGTTTAGCCTTGGTATCTACGTCAGGTACAGCTTCGGCCCAT
GA------------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G155800
TCCGAAAATAGTTGTCATCAAAATGGATAAAAAATCAAAATGGATAAAAAGAGATATATCTAGAACTAAAATATGTTTAG
ATACACCGAAAGTGCTATTGTGAGCTCGAGCTCACAGGCACCCTTTGCTACAGTACAAACAAAAAGAATATTTAAAAAGT
TCAAAAAAATCTGAATTTTTTTGGCAACAAACATTGACATATTTTTCACATGCGTACAAATTTTCATGACAAAATGACAT
TCATGTAGGTCTCAGCAAAAAAAAACAAAATCGATGCTCAAAAATGCTTCCAAAAACAGTTTTTTTGGAGCATGATTTTG
TTTTTTTTGTTGACACCTCCACAAATGTCATTTCATCACGAAAATTGGCACGCATGTAGAAAAAACATCAAAGTTTCTTG
ACAAAAAAATTCAGATTTTTTTGAATTTTTTTACTATTTTTTCGGATTTTACTGTTCATCCGGGATCACTGGTGCCCGGG
ATCAATTCCTCCGCGTCCTAGATACATCCTTTTTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACTATATA
TATTAGTTTTTCGT----------TTCCCGTTGGTCTGGGTTTCGCGATGCTGC---ATACCATGCTTGAGTCTGTAATA
ATGCCGATCAGGGTCAGGGTCAGGGTCAGGGTCAGCCGGTGGCTTGCGTCTCGGGACATGCATGTTTCAGTCGAGGGATG
TCCGTCCAATCGTCGCATGCAGCGATCGTGCGTGTTGGCAAACCCATAGGAGATG-----CCGGAGAAGAAGTGGTCCAG
AACAGGATACAAGGTATCACCACCACCAGAGTGCTTCACCTGACAAGTTCCTTGTCTTCTGTGAA-----AGGGTTTCTT
CCTCCCCCGCCTCCAGGACACGGCAGCTCACGTGTGCAACCATATAAATGTAGGTGTAGGCACGTAGCCTCTGCAACCAA
GTACCGCATACTCGCCAGCTACATTCCTCAGAGACGCAACAAGTTATTCAGCAGAAATCAGCCATG---------GCCGC
CATCGCAGGCCGCGCGTACGAGGACTTCGTGCCGCCGCACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCG
ATCTCACCGCCGCAGGCACGCACCGCAACCCCCCTACATATATTAGTACCTCTTCTTTGCTGACTTCTTCAGCCGCATCG
CATGAGTTGTTATATCATATGCCGGGATCATGGATCAGCTTGTGTTGATTTAGTTAGTACGATGTGCCGATTGCAGGGTA
CAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCCACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCA
ACCGCTGGAGCCGCTTCCGCCTCGAGTTCCGCGTGCCCGACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGC
GGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACC---------GC---GGTCGGCGACGTCTCTGGTAAGCAGGTGCC
CCCGGCGGCCAAGGCTGATGCTTCCGGCGTTGGAGCAGGAGACAAGGAAGACGAGAACGTGCAGAAACAGCCGGCGGAGG
AGCGCGGGGCCGACGCGGTCAAAGATAGTGCCCGCCTCGATCAAGGACAAGATAGTGGCCGCCTTGATCAAGGACAAGGT
ACCCCTGCCGACGGCGTCCGGGGAGTGGAGTCGCCGGCGACGTCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAG
AAAGCTTGTGACCACCGTGGTTGGCGCGGTGCTCGTCCTGTTTAGCCTTGGTATCTACGTCAGGTACAGCTTCGGCCCAT
GAGCTGAGGCAAGAAGCGTTG-----------------------------------ACTACTCGACGTCAGATGAGCGAT
GAGCCTAAACGATTTGGCGCCAAAACGTTGTGCAAGTGCGATAGTGCT--AAGCGATGCTCGGGTTGACTCAATTGTATC
CTAAACCTAAACTACAGCTGCTTAAGATTCATGATGAATCATGACGGCTTCCTTAATCTGGTACCAACATGTACTCAC--
-------------------------------------------------------------------------CTCTCTC
T-----------------------------------------------------------------ATATAAGCACTCTT
ATAACAAATCCTCTGCTCTAGTATAAATCAAATCCTGCACCACAATACAACATTCTAAACTTTAATAAGAATCGGAATCA
TTTCTCCTTGTTGGCTATTTATAAATTTACAGCCCTCAAATCACC---ATCATAATTCTGCTTTGAGGTTCAAA------
-GTAGAGTTCAAAAGCAAACACCTGAACAAATTATTTGTCCTTTTTAGGGAAGACAGTTTATTTG---------------
------------TCAGAATAAACCTAATGGCAACACGGGCGGCTCATTTCTTTCGATGATTCTGGCACTCGCAATAACGA
AAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGTGCTTCCGCCCTCCGCCGGTGCAGGCTATCCTCGGCGTCGGC
GTCGGCGG------TTTCTCCGCGGCGCCCCGCCTCAGCTGCCTGGAGATCTCGCGCAGGTAGCCGCCTACACCGCCGCC
CTTCGTCTCCTCCTGCTTCCCCGGCGAGCGCGCGCGGGCATTGCTGGTATTGGAGCTCCGCGGCAGCTTGCTGCCGAAGC
ACGGCGGCTGATGAGACGTTCTGAACCCGAGCTGATCCCCGACAGAGGAGGAGGCAGTTGAGGAAGCGGGGCTGGAGGAG
CCCGACACGGATGCATCACCGGCTGGCGGCGGCCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCTGTTCTCCGTGGACGG
CGATGCCGAAACCACGTCGCCCTTGGGCGCGGCCTTCTTCTTCTCCTTGCCGCCGAGCGCGCCGAAGCACTTGGGCGAGG
CGGACCGGCTGCGCTGAAGAGG
>chr1A_535
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------------------------------------------------------TTTTTGGGCGGAGGGAGTACTATT--
--TTAGTTTTTCGTTTATTCACCCTTCGCGGTGGTCTGGGTTTTGTGATGCTGCTTTATACCATGCTTGAGTCTGTAATG
TC---------------GGTCAGGGTCAGGGTCAGCCGGTGGCTTGCGTCCCGGGACATGCATGCTTCAGTTGAGGGATG
TCCGTCCAATCGTCACATGCAGCGATCGTGCGTGTTGGCAAGCCCATGGGAGATGCGATGCCGGAGAAGAAGTGGTCCAG
AACAGGATACAAGGTATCAC----------------CACCTGACAAGTTCCTTCTCTACTGTGAAGGGTAAGGGTTTCTA
ACTCCCCCGCCTCTAGGACACTCCAGCTCAAGTGTCCAACCATATAAATGTA----TAGGCACGTAGCCTCTGCAACCAA
GCAGTGCATACTCGCCAGCTACATTCCTCAGCGACCCAACACGTTATTCAACAGGGATCAGTGATGGCCGCCCCCGCTGC
CGCCCCCGGCCGCGCGTACGAGGACTTCGTGCCGCCGCACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCG
ATCTCACCGCCGCAGGCACGCACCGCACCCCCCTAC---ATATTAGTAC--------------------------CATCG
CATGAGTTGT------ATATGCCG-------GGATCAGCTTGTGTTGATTTAGTTA---CGAGGTGCCGATTGCAGGGTA
CAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCCACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCA
ACCGCTGGAGCCGCTTCCGGCTGGAGTTCCGCGTGCCCGACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGC
GGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACGGGGCCTGCGGCCGCGGTCGGCGACGTCTCCGGCAAGCAGGTGCC
CCCGGCGGCCAAGGCCGATGCTTCCGGCGTTCGAGCAGGAGACAAGGAAGATGAGAACGTGCAGAAACAGCCGGTGGAGG
AGCGCGGGGCCGACGCGGTGA---------------------------AAGATAGTGGCCGCCTTGATCAAGGACAAGGT
ACCCCTGCCGACGGCGTCCAAGGAGTGGAGGCACCGGCGCCGGCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAG
AAAGCTTGTGACCAGCGTGGTTGGCGCGGTGCTCGTCCTGTTTAGCCTTGGCATCTACGTCAGGTACAGCTTCGGCCCAT
GAGCTGAGGCAAGAGGTGTTAACTACTCGACGTCATTCTCTCTCTCAAAAAAAAAAACTACTCGACGTCAGATGAGCGAT
GAGCCTAAACGATTTGCCGCCAAAACA-TGTGCAAGTGCGATAGTGCTAAAAGCGATGCTCGGGTTGACTCAATTGTATC
CTAAACCTGAACTACAGCTGCTTAAGATTCATGA---ATCATGACGGCTCCGTTAATCTGGTACCAACATGTACAACTTT
TATTTCATT----------------------------------------------------------CTCTCTCTCTCTC
T-----------------------------------------------------------------ATATAAGCACGCCT
ACAACAAATCCTCTGCTCTTGTATAAAC--------------------------------------AAGAATCAGAAGCA
TTCCTCCTTGTTGGCTACTTACAAATTTACACCATCCCAAATCACTATATCATAATTCTGCTTTGAGGTTCAAACTTCAA
AGTAGAGTTCATAAGCAAACACCTGAACAA---------------------------TTTATTTG---------------
------------TCAGAATAAACCTAATGGCAACACGGGCGGCCCATTTCTTTCGATGATTCTGGCACTCGCAGTAACGA
AAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGCGCTTCCGCCCTCCGCCGGTGCAGGCTATCCTCGCCGTCGG-
-----CGGCGGCGGTTTCTCCGTGCCGCCCCGCCTCAGCCGCCTCGAGATCTCGCGCAGGTAGCTGCCTACACCGCCGCC
CTTCGTCTCCTACTGCA-CCCCGGCGAGCGCGCGCGGGCATTGCTGGTATTGGAGCCCCGCGGCAGCTT-----------
---GCGGCTGATGAGACGTTCTGAACCCGAGCCGATCTCCGACAGAGGAGGAGGCAGTTGAGGAAGCGGGGCTGGAGGAG
CCCGACACGGATGCATCGCCGGCTGGCGGCGACCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCGGTTCTCGGTGGACGG
CGATGCCGGAACCACGTCGCCCTTCGGCACGGCCTCCTTCTTCTTCTTGCCGCCGAGCGCGCCGAAGCACTTGGGCGAGG
CGGACCAGCTGCGCTGAAGAGG
>chr1D_599
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---------------------------------------------------TGCTTTATACCATGCTTGAGTCTGTAATA
ATGCCGATCAG------GGTCAGGGTCAGGGTCAGCCGGTGGCTTGCGTCCCGGGACATGCATGTTTCAGTCGAGGGATG
TCCGTCCAATCGTCACATGGAGCGATGGTGCGTGTTGGCAAGCCCGTGGGAGATGCGATGCCGGAGAAGAAGTGGTCCAG
AACAGGATACAAGGTATCACCACCACCAGAGTGCTTCACCTGACAAGTTCCTTCTCTTCTGTGAA-----AGGGTTTCTT
CCTCCCCCGCCTCCAGGACACGGCAGCTCACGTGTGCAACCATATAAATGTAGGCGTAGGCACGTAGCCTCTGCAACCAA
GTAGTGCATACTCGCCAGCTACATTTCTCAGCGACGCAACAAGTTATTCAAGAGAAATCAGTCATGGCCGCCACCGCTGC
CATCGCCGGCCGCGCGTACGAGGACTTCGTGCCGCCGCACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCG
ATCTCACCGCCGCAGGCACGCACCGCACCCCCGTAC-------------CTCTTCTTTGCTGAGTTCTTGGGCCGCATCG
CATGAGTTGT------ATATGCCG-------GGATCAGCTTGTGTTGATTTAGTTA---TGAGGTGCCGGTTGCAGGGTA
CAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCCACGGGCTAGTGGTTGTGCGCGGCGAGCGCGCCGTCGCGGGCA
ACCGCTGGAGCCGCTTCCGCCTGGAGTTCGGCGTGCCCGGCGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGC
GGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACC---------GCCGCGGTCGGCGACGTCTCCGGCAAGCAGGTGCC
CCCGGCGGCCAAGGCTGATGCTTCCGGCGTTCGAGCAGGAGATAAGGAAGATGAGAACGTGCAGAAACAGCCGGCGGAGG
AGCGCGGGGCCGACGAGGTGA---------------------------AAGATAGTGGCCGCCTTGATCAAGGACAAGGT
ACCCCTGCCGACGGCGTCCGGGGAGTGGAGTCGCCGGCGACGGCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAG
AAAGCTTGTGACCACCGTGGTTGGCGCGGTGCTCGTCCTGTTTAGCCTTGGCATCTACGTCAGGTACAGCTTCGGCCCAT
GAGCCGAGGCAAGGGGTGTTGACTACTCGAC-----------------------------------GTCAGATGAGCGAT
GAGCCTAAACGATTTGGCGCCAAAACGTTGTGCAAGTGCGATAGTGCT--AAGCGATGCTCGGGTTGACTCAATTGTATC
CTAAACCTAAACTACAGCTGCTTAAGATTCATGA---ATCATGACGGCTTCGTTAATCTGGTACCAACATGTACAACTTT
TATTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TAGTATAAATCCTCTGCTCTAGTATAAATCAAATCATCTGCTCTACTGAGAATATTCGAAACATAAATATAAGCACGCCT
ACAACAAATCCTCTGCTCTAGTATAAATCAAATCCTGCACCACAATACAATATTCCAAACATAAATAAGAATCGGAATCA
TTTCTCCTTGTTGGCTATTTACAAATTTACAACCCTCAAATCACC---ATCATAATTCTGCTTTGAGGTTCAAA------
-GTAGAGTTCAAAAGCAAACACCTGAACAA---------------------------ATTATTTGTCCTTTTTAGGGAAG
ACAATTTATTTTTCAGAATAAACCTAATGGCAACACGGGCGGCCCATTTCTTTCGATGATTCTGGCACTCGCAGTAACGA
AAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGCGCTTCCGCCCTCCGCCGGTGCAGGCTATCCTCGGCGTCGG-
-----CGG------TTTCTCCGCGGTGCCCCGCCTCAGCCGCCTGGAGATCTCGCGCAGCTAGCCGCCTACACCGCCGCC
CTTCGTCTCCTCCTGCTTCCCCGGCGAGCGCGCGCGGGCGTTGCTGGTATTGGAGCCCCGCGGCAGCTTGCTGACGAAGC
ACGGCGGCTGATGAGACGTTCTGAACCCGAGCCGATCCCCGACAGAGGAGGGGGCAGTTGAGGAAGCGGGGCTGGAGGAG
CCCGACACGGATGCATCGCCGGCTGGCGGCGGCCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCGGTTCTCCGTGGACGG
CGATGCCGAAACCACGTCGCCCTTGGGCGCGGCCTTCTTCTTCTCCTTGCCGCCGAGCGCGCCGAAGCACTTGGGCGAGG
CGGACCGGCTGCGCTGAAGAGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S---------------SSS
SS-------------------------S--S------------S-S----------------------------------
-----------SSSSSS---------------------------------S-----------------------------
--------------S--------------------------S-----S--------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------------------S-------------------------
---SS--------------------------S------------------S----------S---------------S--
------S-------------------------------------------------------------------------
---------------------------S-----SSSSSS------------------------S-----SS---------
----------SSSSSS--------SSSSSSS-------------------------SSS---S-----------------
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----------------------S---------------------------------------------------------
-----------------------------------------------------------------S--S-----------
-------------------------------S-------------------S----------------------------
-------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
------------------------------------------S-------------------------------------
---------------------------------------------------S----------------------------
--------------S-S---------------------------------------------------------------
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----------------------------------SSS--------------S----------------------SSSS--
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----------------------------------------------------------------------------S-S-
-S------------------------------------------------S----S----S-S-----------------
---------------------S---------S------------------------------------------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-------------------------------------------S-----------------------------S------
--------------------------------------S----------------------------------------S
SSSSS----------------------------------S----------------------------------------
--------------------------------------------------------S----------------S------
--------------------------------S-----------------------------------------------
-----------------S----------------------------------------------S---------------
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>forward_965
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-----------------------------------------------------------------AGCCTCTGCAACCAA
GTACC---------------------------------------------------------------------------
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>reverse_1855
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--------------AGCGTTGACTACTCGACGTC----------------------------------------------
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