Multiple sequence alignment - TraesCS1B01G150900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G150900 chr1B 100.000 4123 0 0 1 4123 234254923 234250801 0.000000e+00 7614.0
1 TraesCS1B01G150900 chr1B 97.849 93 2 0 2250 2342 577654989 577654897 1.190000e-35 161.0
2 TraesCS1B01G150900 chr1B 92.222 90 3 1 2333 2418 37692565 37692476 1.560000e-24 124.0
3 TraesCS1B01G150900 chr1B 91.111 90 4 1 2333 2418 704473 704384 7.240000e-23 119.0
4 TraesCS1B01G150900 chr1D 97.107 968 20 7 768 1729 160904700 160903735 0.000000e+00 1626.0
5 TraesCS1B01G150900 chr1D 97.414 928 21 2 2416 3341 160903320 160902394 0.000000e+00 1578.0
6 TraesCS1B01G150900 chr1D 93.103 580 32 7 3550 4123 160877718 160877141 0.000000e+00 843.0
7 TraesCS1B01G150900 chr1D 90.826 436 27 5 1687 2122 160903740 160903318 4.620000e-159 571.0
8 TraesCS1B01G150900 chr1D 84.953 319 27 6 2 299 160906296 160905978 1.860000e-78 303.0
9 TraesCS1B01G150900 chr1D 90.141 213 18 3 506 715 160905060 160904848 1.460000e-69 274.0
10 TraesCS1B01G150900 chr1D 97.744 133 3 0 2121 2253 270608326 270608458 3.210000e-56 230.0
11 TraesCS1B01G150900 chr1D 97.744 133 3 0 2121 2253 271285340 271285472 3.210000e-56 230.0
12 TraesCS1B01G150900 chr1D 97.744 133 3 0 2121 2253 315408574 315408442 3.210000e-56 230.0
13 TraesCS1B01G150900 chr1D 95.745 141 6 0 3336 3476 160902316 160902176 1.150000e-55 228.0
14 TraesCS1B01G150900 chr1D 91.111 90 4 1 2333 2418 182614561 182614472 7.240000e-23 119.0
15 TraesCS1B01G150900 chr1D 90.000 90 5 1 2333 2418 457078558 457078647 3.370000e-21 113.0
16 TraesCS1B01G150900 chr1D 90.588 85 7 1 3476 3560 160879758 160879675 1.210000e-20 111.0
17 TraesCS1B01G150900 chr1D 91.892 74 5 1 2346 2418 482003949 482003876 7.290000e-18 102.0
18 TraesCS1B01G150900 chr1D 90.000 70 3 1 2333 2398 442524754 442524823 2.040000e-13 87.9
19 TraesCS1B01G150900 chr1D 97.561 41 1 0 2346 2386 482003983 482003943 2.060000e-08 71.3
20 TraesCS1B01G150900 chr7A 86.667 270 31 3 1845 2114 733748201 733748465 1.120000e-75 294.0
21 TraesCS1B01G150900 chr7A 82.095 296 40 9 1836 2122 688691593 688691302 1.480000e-59 241.0
22 TraesCS1B01G150900 chr7A 83.710 221 28 4 2203 2418 560588322 560588105 6.990000e-48 202.0
23 TraesCS1B01G150900 chr5D 93.567 171 10 1 2120 2290 352696785 352696954 1.900000e-63 254.0
24 TraesCS1B01G150900 chr5D 86.567 134 18 0 1020 1153 546076967 546076834 9.230000e-32 148.0
25 TraesCS1B01G150900 chr5D 90.526 95 5 1 2333 2423 351696491 351696397 5.600000e-24 122.0
26 TraesCS1B01G150900 chr5D 90.110 91 5 1 2333 2419 67293846 67293936 9.370000e-22 115.0
27 TraesCS1B01G150900 chr5D 87.129 101 9 1 2333 2429 52745355 52745255 1.210000e-20 111.0
28 TraesCS1B01G150900 chr5D 76.730 159 22 11 3831 3979 220104868 220104715 1.590000e-09 75.0
29 TraesCS1B01G150900 chr5B 83.643 269 34 8 1860 2119 491920507 491920774 1.140000e-60 244.0
30 TraesCS1B01G150900 chr5B 81.985 272 39 8 1860 2122 426375749 426375479 5.360000e-54 222.0
31 TraesCS1B01G150900 chr5B 86.567 134 18 0 1020 1153 689225017 689224884 9.230000e-32 148.0
32 TraesCS1B01G150900 chr5B 89.423 104 6 2 2333 2431 476008875 476008772 4.330000e-25 126.0
33 TraesCS1B01G150900 chr5B 91.209 91 4 1 2333 2419 531935074 531934984 2.010000e-23 121.0
34 TraesCS1B01G150900 chr5B 90.426 94 4 2 2334 2422 542814027 542814120 7.240000e-23 119.0
35 TraesCS1B01G150900 chr5B 88.776 98 6 2 2333 2425 184284055 184283958 9.370000e-22 115.0
36 TraesCS1B01G150900 chrUn 82.857 280 38 6 1843 2122 390768831 390768562 4.120000e-60 243.0
37 TraesCS1B01G150900 chrUn 83.032 277 37 6 1843 2119 434309525 434309791 4.120000e-60 243.0
38 TraesCS1B01G150900 chrUn 98.496 133 2 0 2121 2253 239743780 239743912 6.890000e-58 235.0
39 TraesCS1B01G150900 chr7D 82.857 280 38 6 1843 2122 596926456 596926187 4.120000e-60 243.0
40 TraesCS1B01G150900 chr7D 82.857 280 38 6 1843 2122 596943291 596943022 4.120000e-60 243.0
41 TraesCS1B01G150900 chr7D 92.523 107 6 2 2247 2351 526495539 526495645 7.140000e-33 152.0
42 TraesCS1B01G150900 chr7D 91.837 49 2 2 1779 1825 163199064 163199016 2.660000e-07 67.6
43 TraesCS1B01G150900 chr3A 97.810 137 2 1 2118 2253 535225519 535225655 6.890000e-58 235.0
44 TraesCS1B01G150900 chr3A 98.958 96 0 1 2240 2335 330699675 330699581 1.970000e-38 171.0
45 TraesCS1B01G150900 chr3A 92.308 91 3 2 2333 2419 606427697 606427607 4.330000e-25 126.0
46 TraesCS1B01G150900 chr2B 97.761 134 3 0 2120 2253 800481024 800480891 8.910000e-57 231.0
47 TraesCS1B01G150900 chr6D 97.744 133 3 0 2121 2253 217731943 217732075 3.210000e-56 230.0
48 TraesCS1B01G150900 chr6D 93.333 105 6 1 2235 2339 10798690 10798587 1.980000e-33 154.0
49 TraesCS1B01G150900 chr6D 90.526 95 4 3 2333 2422 242763880 242763974 2.010000e-23 121.0
50 TraesCS1B01G150900 chr6D 90.909 88 4 1 2333 2416 143406380 143406467 9.370000e-22 115.0
51 TraesCS1B01G150900 chr6D 88.889 90 6 1 2333 2418 1591487 1591576 1.570000e-19 108.0
52 TraesCS1B01G150900 chr7B 95.745 141 5 1 2114 2253 250501143 250501283 4.150000e-55 226.0
53 TraesCS1B01G150900 chr7B 92.391 92 3 2 2333 2420 45052746 45052655 1.200000e-25 128.0
54 TraesCS1B01G150900 chr7B 93.182 44 3 0 1779 1822 125191090 125191047 9.570000e-07 65.8
55 TraesCS1B01G150900 chr2D 81.443 291 36 13 1845 2122 444162387 444162102 5.360000e-54 222.0
56 TraesCS1B01G150900 chr2D 81.784 269 39 8 1860 2119 386133581 386133848 2.500000e-52 217.0
57 TraesCS1B01G150900 chr3B 81.164 292 39 13 1845 2126 151184703 151184418 1.930000e-53 220.0
58 TraesCS1B01G150900 chr3B 96.842 95 3 0 2250 2344 44750959 44751053 4.270000e-35 159.0
59 TraesCS1B01G150900 chr3B 92.308 91 3 1 2333 2419 508729156 508729066 4.330000e-25 126.0
60 TraesCS1B01G150900 chr3B 89.423 104 6 3 2333 2431 779221416 779221519 4.330000e-25 126.0
61 TraesCS1B01G150900 chr6B 95.876 97 3 1 2245 2341 320551122 320551027 5.520000e-34 156.0
62 TraesCS1B01G150900 chr6B 92.473 93 3 1 2333 2421 598447605 598447697 3.340000e-26 130.0
63 TraesCS1B01G150900 chr6B 93.333 90 2 1 2333 2418 623382090 623382001 3.340000e-26 130.0
64 TraesCS1B01G150900 chr4B 90.083 121 10 1 2217 2335 273620085 273620205 5.520000e-34 156.0
65 TraesCS1B01G150900 chr4B 90.526 95 5 1 2333 2423 35768575 35768669 5.600000e-24 122.0
66 TraesCS1B01G150900 chr4B 91.111 90 4 1 2333 2418 99391054 99391143 7.240000e-23 119.0
67 TraesCS1B01G150900 chr4B 90.000 90 5 1 2333 2418 376368489 376368578 3.370000e-21 113.0
68 TraesCS1B01G150900 chr3D 92.453 106 7 1 2231 2335 406157833 406157938 2.570000e-32 150.0
69 TraesCS1B01G150900 chr3D 90.110 91 5 1 2333 2419 561708065 561708155 9.370000e-22 115.0
70 TraesCS1B01G150900 chr4A 86.567 134 18 0 1020 1153 623326760 623326893 9.230000e-32 148.0
71 TraesCS1B01G150900 chr6A 90.722 97 5 1 2333 2425 16232546 16232642 4.330000e-25 126.0
72 TraesCS1B01G150900 chr6A 92.135 89 5 2 2333 2419 17663556 17663644 1.560000e-24 124.0
73 TraesCS1B01G150900 chr4D 94.595 74 4 0 2346 2419 504065151 504065224 9.370000e-22 115.0
74 TraesCS1B01G150900 chr4D 88.542 96 7 1 2333 2424 3571953 3572048 3.370000e-21 113.0
75 TraesCS1B01G150900 chr4D 88.764 89 7 3 2336 2421 484235 484147 5.640000e-19 106.0
76 TraesCS1B01G150900 chr4D 87.778 90 7 1 2333 2418 170474524 170474613 7.290000e-18 102.0
77 TraesCS1B01G150900 chr4D 87.778 90 6 2 2333 2418 64154999 64154911 2.620000e-17 100.0
78 TraesCS1B01G150900 chr4D 86.957 92 8 1 2333 2420 428942983 428943074 2.620000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G150900 chr1B 234250801 234254923 4122 True 7614.000000 7614 100.000000 1 4123 1 chr1B.!!$R3 4122
1 TraesCS1B01G150900 chr1D 160902176 160906296 4120 True 763.333333 1626 92.697667 2 3476 6 chr1D.!!$R4 3474
2 TraesCS1B01G150900 chr1D 160877141 160879758 2617 True 477.000000 843 91.845500 3476 4123 2 chr1D.!!$R3 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 1368 0.036388 GCGGTGGATCTGAGTTTCCA 60.036 55.0 3.37 3.37 39.70 3.53 F
704 1440 0.099968 TGTGTCATAGCTACGACCGC 59.900 55.0 16.76 10.36 0.00 5.68 F
2139 3012 0.036105 TACTACCTGCGTCTCGGTGA 60.036 55.0 0.00 0.00 34.76 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2993 0.036105 TCACCGAGACGCAGGTAGTA 60.036 55.0 0.00 0.00 39.0 1.82 R
2149 3022 0.110056 GTCGACCAAGAACTACGCGA 60.110 55.0 15.93 0.00 0.0 5.87 R
3699 6626 0.039617 CGAAAGTTTGGCGCCATTCA 60.040 50.0 33.25 13.76 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.644399 GACTTGTCCGACGCTCCCC 62.644 68.421 0.00 0.00 0.00 4.81
64 65 1.442987 GCTTTTGCTGCCAACCACT 59.557 52.632 0.00 0.00 43.35 4.00
65 66 0.673437 GCTTTTGCTGCCAACCACTA 59.327 50.000 0.00 0.00 43.35 2.74
75 76 1.518325 CCAACCACTATCGTGCAACA 58.482 50.000 0.00 0.00 39.86 3.33
84 85 2.133742 ATCGTGCAACAGCAAGCCAC 62.134 55.000 0.00 0.00 40.49 5.01
88 89 1.286880 GCAACAGCAAGCCACGAAT 59.713 52.632 0.00 0.00 0.00 3.34
94 95 1.084370 AGCAAGCCACGAATAGACGC 61.084 55.000 0.00 0.00 36.70 5.19
96 97 1.075542 CAAGCCACGAATAGACGCAA 58.924 50.000 0.00 0.00 36.70 4.85
106 107 1.068474 ATAGACGCAACAACGCAGAC 58.932 50.000 0.00 0.00 36.19 3.51
126 148 2.750350 CACCACCACCACCTCTCC 59.250 66.667 0.00 0.00 0.00 3.71
135 157 2.297033 CCACCACCTCTCCAAAACAATG 59.703 50.000 0.00 0.00 0.00 2.82
139 161 3.305608 CCACCTCTCCAAAACAATGCTTC 60.306 47.826 0.00 0.00 0.00 3.86
147 169 3.868077 CCAAAACAATGCTTCCAACGAAA 59.132 39.130 0.00 0.00 0.00 3.46
197 219 0.180642 TCGACGAGGCAGATCTAGGT 59.819 55.000 0.00 0.00 0.00 3.08
237 259 1.419387 CCCAAATGGCAAAAGGGTGAA 59.581 47.619 11.97 0.00 34.75 3.18
269 291 2.627699 GGTGATGCCTTCAAGGAAAACA 59.372 45.455 7.98 0.00 37.67 2.83
279 301 4.916983 TCAAGGAAAACAACATCCACAG 57.083 40.909 0.00 0.00 38.23 3.66
299 321 1.479323 GATGTTGCCATCACCTGCATT 59.521 47.619 0.00 0.00 45.68 3.56
300 322 0.889994 TGTTGCCATCACCTGCATTC 59.110 50.000 0.00 0.00 37.33 2.67
302 324 1.135199 GTTGCCATCACCTGCATTCTG 60.135 52.381 0.00 0.00 37.33 3.02
303 325 1.317431 TGCCATCACCTGCATTCTGC 61.317 55.000 0.00 0.00 45.29 4.26
327 592 2.966309 GCAAGACTTTGGTCCGGCG 61.966 63.158 0.00 0.00 43.05 6.46
329 594 1.004918 AAGACTTTGGTCCGGCGAG 60.005 57.895 9.30 0.00 43.05 5.03
333 598 0.896940 ACTTTGGTCCGGCGAGTCTA 60.897 55.000 9.30 0.00 0.00 2.59
342 607 0.247974 CGGCGAGTCTACACCTAACG 60.248 60.000 0.00 0.00 0.00 3.18
350 615 3.629883 TACACCTAACGCCGCACCG 62.630 63.158 0.00 0.00 0.00 4.94
377 642 1.883638 GCAGACCACACACCATCACAT 60.884 52.381 0.00 0.00 0.00 3.21
399 664 0.671472 CGCTCAACTCCAGCACATCA 60.671 55.000 0.00 0.00 36.61 3.07
427 692 0.746063 CACCTCAAGCTGCACCAAAA 59.254 50.000 1.02 0.00 0.00 2.44
527 1261 3.400054 GAGGCCAGGTAACGCCCT 61.400 66.667 5.01 0.00 43.47 5.19
574 1308 4.161295 TTCGCCGATGAGCCCCTG 62.161 66.667 0.00 0.00 0.00 4.45
609 1343 0.689412 GAGGAGGGGAGAAGGAGGTG 60.689 65.000 0.00 0.00 0.00 4.00
624 1358 4.832608 GTGGGACGGCGGTGGATC 62.833 72.222 13.24 0.00 0.00 3.36
627 1361 3.458163 GGACGGCGGTGGATCTGA 61.458 66.667 13.24 0.00 0.00 3.27
629 1363 2.680352 ACGGCGGTGGATCTGAGT 60.680 61.111 13.24 0.00 0.00 3.41
631 1365 1.079127 CGGCGGTGGATCTGAGTTT 60.079 57.895 0.00 0.00 0.00 2.66
632 1366 1.084370 CGGCGGTGGATCTGAGTTTC 61.084 60.000 0.00 0.00 0.00 2.78
634 1368 0.036388 GCGGTGGATCTGAGTTTCCA 60.036 55.000 3.37 3.37 39.70 3.53
636 1370 2.778299 CGGTGGATCTGAGTTTCCAAA 58.222 47.619 8.14 0.00 43.42 3.28
637 1371 2.744202 CGGTGGATCTGAGTTTCCAAAG 59.256 50.000 8.14 3.31 43.42 2.77
647 1383 3.122727 TTTCCAAAGGGGGCGACGT 62.123 57.895 0.00 0.00 37.22 4.34
674 1410 2.364002 TCGAGTGTGTGATGGAAACTGA 59.636 45.455 0.00 0.00 0.00 3.41
680 1416 6.240894 AGTGTGTGATGGAAACTGATACATT 58.759 36.000 0.00 0.00 0.00 2.71
704 1440 0.099968 TGTGTCATAGCTACGACCGC 59.900 55.000 16.76 10.36 0.00 5.68
715 1451 0.390124 TACGACCGCATATCAACCCC 59.610 55.000 0.00 0.00 0.00 4.95
716 1452 1.954146 CGACCGCATATCAACCCCG 60.954 63.158 0.00 0.00 0.00 5.73
717 1453 1.145377 GACCGCATATCAACCCCGT 59.855 57.895 0.00 0.00 0.00 5.28
718 1454 1.153249 ACCGCATATCAACCCCGTG 60.153 57.895 0.00 0.00 0.00 4.94
719 1455 1.145156 CCGCATATCAACCCCGTGA 59.855 57.895 0.00 0.00 0.00 4.35
720 1456 1.157870 CCGCATATCAACCCCGTGAC 61.158 60.000 0.00 0.00 0.00 3.67
721 1457 0.461163 CGCATATCAACCCCGTGACA 60.461 55.000 0.00 0.00 0.00 3.58
722 1458 1.299541 GCATATCAACCCCGTGACAG 58.700 55.000 0.00 0.00 0.00 3.51
723 1459 1.299541 CATATCAACCCCGTGACAGC 58.700 55.000 0.00 0.00 0.00 4.40
724 1460 0.908910 ATATCAACCCCGTGACAGCA 59.091 50.000 0.00 0.00 0.00 4.41
725 1461 0.687920 TATCAACCCCGTGACAGCAA 59.312 50.000 0.00 0.00 0.00 3.91
726 1462 0.606401 ATCAACCCCGTGACAGCAAG 60.606 55.000 0.00 0.00 0.00 4.01
727 1463 1.525995 CAACCCCGTGACAGCAAGT 60.526 57.895 0.00 0.00 0.00 3.16
729 1465 0.250166 AACCCCGTGACAGCAAGTAC 60.250 55.000 0.00 0.00 0.00 2.73
730 1466 1.369692 CCCCGTGACAGCAAGTACA 59.630 57.895 0.00 0.00 0.00 2.90
731 1467 0.949105 CCCCGTGACAGCAAGTACAC 60.949 60.000 0.00 0.00 0.00 2.90
732 1468 0.249699 CCCGTGACAGCAAGTACACA 60.250 55.000 0.00 0.00 32.25 3.72
733 1469 1.608025 CCCGTGACAGCAAGTACACAT 60.608 52.381 0.00 0.00 32.25 3.21
734 1470 1.726791 CCGTGACAGCAAGTACACATC 59.273 52.381 0.00 0.00 32.25 3.06
736 1472 2.672714 GTGACAGCAAGTACACATCGA 58.327 47.619 0.00 0.00 32.25 3.59
738 1474 3.493129 GTGACAGCAAGTACACATCGAAA 59.507 43.478 0.00 0.00 32.25 3.46
739 1475 4.152402 GTGACAGCAAGTACACATCGAAAT 59.848 41.667 0.00 0.00 32.25 2.17
740 1476 5.347635 GTGACAGCAAGTACACATCGAAATA 59.652 40.000 0.00 0.00 32.25 1.40
741 1477 5.576774 TGACAGCAAGTACACATCGAAATAG 59.423 40.000 0.00 0.00 0.00 1.73
742 1478 5.720202 ACAGCAAGTACACATCGAAATAGA 58.280 37.500 0.00 0.00 0.00 1.98
743 1479 6.163476 ACAGCAAGTACACATCGAAATAGAA 58.837 36.000 0.00 0.00 0.00 2.10
745 1481 5.288712 AGCAAGTACACATCGAAATAGAACG 59.711 40.000 0.00 0.00 0.00 3.95
746 1482 5.500290 GCAAGTACACATCGAAATAGAACGG 60.500 44.000 0.00 0.00 0.00 4.44
748 1484 5.957798 AGTACACATCGAAATAGAACGGAA 58.042 37.500 0.00 0.00 0.00 4.30
750 1486 7.039882 AGTACACATCGAAATAGAACGGAAAT 58.960 34.615 0.00 0.00 0.00 2.17
751 1487 6.737254 ACACATCGAAATAGAACGGAAATT 57.263 33.333 0.00 0.00 0.00 1.82
753 1489 6.183360 ACACATCGAAATAGAACGGAAATTCC 60.183 38.462 0.99 0.99 0.00 3.01
754 1490 6.037172 CACATCGAAATAGAACGGAAATTCCT 59.963 38.462 10.64 0.00 33.30 3.36
755 1491 6.598064 ACATCGAAATAGAACGGAAATTCCTT 59.402 34.615 10.64 0.00 33.30 3.36
756 1492 6.417191 TCGAAATAGAACGGAAATTCCTTG 57.583 37.500 10.64 0.00 33.30 3.61
757 1493 6.167685 TCGAAATAGAACGGAAATTCCTTGA 58.832 36.000 10.64 0.00 33.30 3.02
758 1494 6.821665 TCGAAATAGAACGGAAATTCCTTGAT 59.178 34.615 10.64 0.00 33.30 2.57
760 1496 6.699575 AATAGAACGGAAATTCCTTGATGG 57.300 37.500 10.64 0.00 33.30 3.51
761 1497 4.034285 AGAACGGAAATTCCTTGATGGT 57.966 40.909 10.64 0.00 33.30 3.55
762 1498 3.758554 AGAACGGAAATTCCTTGATGGTG 59.241 43.478 10.64 0.00 33.30 4.17
763 1499 2.446435 ACGGAAATTCCTTGATGGTGG 58.554 47.619 10.64 0.00 33.30 4.61
764 1500 1.750778 CGGAAATTCCTTGATGGTGGG 59.249 52.381 10.64 0.00 33.30 4.61
765 1501 1.482182 GGAAATTCCTTGATGGTGGGC 59.518 52.381 4.46 0.00 37.07 5.36
766 1502 2.460669 GAAATTCCTTGATGGTGGGCT 58.539 47.619 0.00 0.00 37.07 5.19
857 1688 1.985895 CCACCACTCCTCCCTACTTTT 59.014 52.381 0.00 0.00 0.00 2.27
858 1689 2.027100 CCACCACTCCTCCCTACTTTTC 60.027 54.545 0.00 0.00 0.00 2.29
859 1690 2.907042 CACCACTCCTCCCTACTTTTCT 59.093 50.000 0.00 0.00 0.00 2.52
865 1697 4.914581 ACTCCTCCCTACTTTTCTCCTTTT 59.085 41.667 0.00 0.00 0.00 2.27
877 1709 3.417069 TCTCCTTTTCTTCATTCGCCA 57.583 42.857 0.00 0.00 0.00 5.69
878 1710 3.074412 TCTCCTTTTCTTCATTCGCCAC 58.926 45.455 0.00 0.00 0.00 5.01
879 1711 2.159382 TCCTTTTCTTCATTCGCCACC 58.841 47.619 0.00 0.00 0.00 4.61
917 1753 1.229529 TCTCCTCCTCCCCACCAAC 60.230 63.158 0.00 0.00 0.00 3.77
949 1785 3.299020 CACGCTCGCTTGATTTTCATTTC 59.701 43.478 0.00 0.00 0.00 2.17
1119 1955 0.670854 GCAACCACTTCTCCCTCGAC 60.671 60.000 0.00 0.00 0.00 4.20
1128 1964 0.323542 TCTCCCTCGACTCCAAGTCC 60.324 60.000 1.69 0.00 42.12 3.85
1200 2036 3.306989 CCCCTCGCATTTCTGCTATATCA 60.307 47.826 0.00 0.00 46.65 2.15
1245 2081 0.731174 CGTGCGTTTTTGGTATGGCC 60.731 55.000 0.00 0.00 37.90 5.36
1391 2227 2.107141 CGGACGGAAGGATGGCTC 59.893 66.667 0.00 0.00 0.00 4.70
1397 2233 2.786495 GGAAGGATGGCTCGCTCGA 61.786 63.158 0.00 0.00 0.00 4.04
1429 2265 9.956640 ACTTCAGAATGTTCTATCAAATCTTCT 57.043 29.630 0.00 0.00 35.34 2.85
1499 2335 6.813152 GCATTGAATTACTGTAGTTGCCATTT 59.187 34.615 0.00 0.00 0.00 2.32
1604 2440 0.106894 CTAGATTCGCCTGGTTCCCC 59.893 60.000 0.00 0.00 0.00 4.81
1625 2461 5.458654 CCCCTTGGATCACATCATTAGGATT 60.459 44.000 0.00 0.00 32.57 3.01
1628 2464 7.070322 CCCTTGGATCACATCATTAGGATTTTT 59.930 37.037 0.00 0.00 32.57 1.94
1662 2498 2.472695 AGGTTGATTGCGAGCTACAA 57.527 45.000 6.14 4.27 34.53 2.41
1667 2503 1.001974 TGATTGCGAGCTACAACCACT 59.998 47.619 3.89 0.00 0.00 4.00
1744 2617 5.255710 ACCTGTCATCTCTATTGTCTTCG 57.744 43.478 0.00 0.00 0.00 3.79
1762 2635 4.754618 TCTTCGTTATGCATCGCCATTATT 59.245 37.500 0.19 0.00 0.00 1.40
1766 2639 7.835634 TCGTTATGCATCGCCATTATTATTA 57.164 32.000 0.19 0.00 0.00 0.98
1785 2658 5.751243 ATTATTGTTATTCTCACCACGCC 57.249 39.130 0.00 0.00 0.00 5.68
1812 2685 4.458989 GGTGTGGTGAGCAATCTTCAAATA 59.541 41.667 0.00 0.00 0.00 1.40
1837 2710 8.725212 AATTCAAATTGTTGTTGTTGTTGTTG 57.275 26.923 0.00 0.00 36.07 3.33
1838 2711 6.851222 TCAAATTGTTGTTGTTGTTGTTGT 57.149 29.167 0.00 0.00 36.07 3.32
1839 2712 7.251704 TCAAATTGTTGTTGTTGTTGTTGTT 57.748 28.000 0.00 0.00 36.07 2.83
1840 2713 7.128331 TCAAATTGTTGTTGTTGTTGTTGTTG 58.872 30.769 0.00 0.00 36.07 3.33
1841 2714 6.610741 AATTGTTGTTGTTGTTGTTGTTGT 57.389 29.167 0.00 0.00 0.00 3.32
1842 2715 6.610741 ATTGTTGTTGTTGTTGTTGTTGTT 57.389 29.167 0.00 0.00 0.00 2.83
1885 2758 9.601217 CTTATACAAGGCCACTATGGAATATAC 57.399 37.037 5.01 0.00 40.96 1.47
1908 2781 9.705103 ATACATTTTGCATCTATATAAGGCCAT 57.295 29.630 5.01 0.00 0.00 4.40
1917 2790 7.824289 GCATCTATATAAGGCCATCAACAGTAA 59.176 37.037 5.01 0.00 0.00 2.24
1918 2791 9.896645 CATCTATATAAGGCCATCAACAGTAAT 57.103 33.333 5.01 0.00 0.00 1.89
1920 2793 8.251026 TCTATATAAGGCCATCAACAGTAATCG 58.749 37.037 5.01 0.00 0.00 3.34
1921 2794 3.627395 AAGGCCATCAACAGTAATCGA 57.373 42.857 5.01 0.00 0.00 3.59
1924 2797 2.213499 GCCATCAACAGTAATCGAGGG 58.787 52.381 0.00 0.00 32.55 4.30
1937 2810 7.285401 ACAGTAATCGAGGGCAAAATTAATGAT 59.715 33.333 12.33 0.00 34.81 2.45
1945 2818 9.533253 CGAGGGCAAAATTAATGATATTTTCTT 57.467 29.630 0.00 0.00 34.01 2.52
2022 2895 6.276832 ACTATTCTTTCTTTGCATGCATGT 57.723 33.333 26.79 5.95 0.00 3.21
2044 2917 5.010314 TGTGGCGTATAAACTATCCCAGTAG 59.990 44.000 0.00 0.00 36.04 2.57
2127 3000 7.735326 ATGAGTTTGTGACCTTATACTACCT 57.265 36.000 0.00 0.00 0.00 3.08
2128 3001 6.931838 TGAGTTTGTGACCTTATACTACCTG 58.068 40.000 0.00 0.00 0.00 4.00
2129 3002 5.731591 AGTTTGTGACCTTATACTACCTGC 58.268 41.667 0.00 0.00 0.00 4.85
2130 3003 4.380841 TTGTGACCTTATACTACCTGCG 57.619 45.455 0.00 0.00 0.00 5.18
2131 3004 3.359033 TGTGACCTTATACTACCTGCGT 58.641 45.455 0.00 0.00 0.00 5.24
2132 3005 3.379372 TGTGACCTTATACTACCTGCGTC 59.621 47.826 0.00 0.00 0.00 5.19
2133 3006 3.631227 GTGACCTTATACTACCTGCGTCT 59.369 47.826 0.00 0.00 0.00 4.18
2134 3007 3.881688 TGACCTTATACTACCTGCGTCTC 59.118 47.826 0.00 0.00 0.00 3.36
2135 3008 2.877168 ACCTTATACTACCTGCGTCTCG 59.123 50.000 0.00 0.00 0.00 4.04
2136 3009 2.225963 CCTTATACTACCTGCGTCTCGG 59.774 54.545 0.00 0.00 0.00 4.63
2137 3010 2.627515 TATACTACCTGCGTCTCGGT 57.372 50.000 0.00 0.00 37.31 4.69
2138 3011 1.022735 ATACTACCTGCGTCTCGGTG 58.977 55.000 0.00 0.00 34.76 4.94
2139 3012 0.036105 TACTACCTGCGTCTCGGTGA 60.036 55.000 0.00 0.00 34.76 4.02
2140 3013 0.892358 ACTACCTGCGTCTCGGTGAA 60.892 55.000 0.00 0.00 34.76 3.18
2141 3014 0.456221 CTACCTGCGTCTCGGTGAAT 59.544 55.000 0.00 0.00 34.76 2.57
2142 3015 1.674441 CTACCTGCGTCTCGGTGAATA 59.326 52.381 0.00 0.00 34.76 1.75
2143 3016 0.892755 ACCTGCGTCTCGGTGAATAA 59.107 50.000 0.00 0.00 30.90 1.40
2144 3017 1.135083 ACCTGCGTCTCGGTGAATAAG 60.135 52.381 0.00 0.00 30.90 1.73
2145 3018 1.135083 CCTGCGTCTCGGTGAATAAGT 60.135 52.381 0.00 0.00 0.00 2.24
2146 3019 2.186076 CTGCGTCTCGGTGAATAAGTC 58.814 52.381 0.00 0.00 0.00 3.01
2147 3020 1.542472 TGCGTCTCGGTGAATAAGTCA 59.458 47.619 0.00 0.00 0.00 3.41
2148 3021 2.165641 TGCGTCTCGGTGAATAAGTCAT 59.834 45.455 0.00 0.00 38.90 3.06
2149 3022 3.187700 GCGTCTCGGTGAATAAGTCATT 58.812 45.455 0.00 0.00 38.90 2.57
2150 3023 3.243177 GCGTCTCGGTGAATAAGTCATTC 59.757 47.826 0.00 0.00 43.01 2.67
2151 3024 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
2158 3031 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
2159 3032 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
2160 3033 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
2161 3034 6.034683 GTGAATAAGTCATTCGCGTAGTTCTT 59.965 38.462 5.77 9.58 45.25 2.52
2162 3035 5.950965 ATAAGTCATTCGCGTAGTTCTTG 57.049 39.130 5.77 0.00 0.00 3.02
2163 3036 2.607187 AGTCATTCGCGTAGTTCTTGG 58.393 47.619 5.77 0.00 0.00 3.61
2164 3037 2.029290 AGTCATTCGCGTAGTTCTTGGT 60.029 45.455 5.77 0.00 0.00 3.67
2165 3038 2.344741 GTCATTCGCGTAGTTCTTGGTC 59.655 50.000 5.77 0.00 0.00 4.02
2166 3039 1.320555 CATTCGCGTAGTTCTTGGTCG 59.679 52.381 5.77 0.00 0.00 4.79
2167 3040 0.592637 TTCGCGTAGTTCTTGGTCGA 59.407 50.000 5.77 0.00 0.00 4.20
2168 3041 0.110056 TCGCGTAGTTCTTGGTCGAC 60.110 55.000 7.13 7.13 0.00 4.20
2169 3042 1.393597 CGCGTAGTTCTTGGTCGACG 61.394 60.000 9.92 0.00 36.21 5.12
2170 3043 0.110056 GCGTAGTTCTTGGTCGACGA 60.110 55.000 9.92 1.86 35.42 4.20
2171 3044 1.467035 GCGTAGTTCTTGGTCGACGAT 60.467 52.381 9.92 0.00 35.42 3.73
2172 3045 2.860062 CGTAGTTCTTGGTCGACGATT 58.140 47.619 9.92 0.00 35.42 3.34
2173 3046 3.240069 CGTAGTTCTTGGTCGACGATTT 58.760 45.455 9.92 0.00 35.42 2.17
2174 3047 4.406069 CGTAGTTCTTGGTCGACGATTTA 58.594 43.478 9.92 0.00 35.42 1.40
2175 3048 4.853196 CGTAGTTCTTGGTCGACGATTTAA 59.147 41.667 9.92 0.00 35.42 1.52
2176 3049 5.219914 CGTAGTTCTTGGTCGACGATTTAAC 60.220 44.000 9.92 10.14 35.42 2.01
2177 3050 4.879598 AGTTCTTGGTCGACGATTTAACT 58.120 39.130 9.92 12.08 0.00 2.24
2178 3051 6.017400 AGTTCTTGGTCGACGATTTAACTA 57.983 37.500 9.92 0.00 0.00 2.24
2179 3052 6.628185 AGTTCTTGGTCGACGATTTAACTAT 58.372 36.000 9.92 0.00 0.00 2.12
2180 3053 6.750963 AGTTCTTGGTCGACGATTTAACTATC 59.249 38.462 9.92 0.00 0.00 2.08
2181 3054 6.446781 TCTTGGTCGACGATTTAACTATCT 57.553 37.500 9.92 0.00 0.00 1.98
2182 3055 7.558161 TCTTGGTCGACGATTTAACTATCTA 57.442 36.000 9.92 0.00 0.00 1.98
2183 3056 7.988737 TCTTGGTCGACGATTTAACTATCTAA 58.011 34.615 9.92 0.00 0.00 2.10
2184 3057 8.461222 TCTTGGTCGACGATTTAACTATCTAAA 58.539 33.333 9.92 0.00 0.00 1.85
2185 3058 9.245962 CTTGGTCGACGATTTAACTATCTAAAT 57.754 33.333 9.92 0.00 34.81 1.40
2247 3120 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
2248 3121 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
2249 3122 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
2250 3123 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
2251 3124 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
2252 3125 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
2253 3126 9.217278 TCCGTGTAGAAATCTAGTGATATACTC 57.783 37.037 0.00 0.00 40.89 2.59
2254 3127 8.452534 CCGTGTAGAAATCTAGTGATATACTCC 58.547 40.741 0.00 0.00 40.89 3.85
2255 3128 8.452534 CGTGTAGAAATCTAGTGATATACTCCC 58.547 40.741 0.00 0.00 40.89 4.30
2256 3129 9.523168 GTGTAGAAATCTAGTGATATACTCCCT 57.477 37.037 0.00 0.00 40.89 4.20
2257 3130 9.742144 TGTAGAAATCTAGTGATATACTCCCTC 57.258 37.037 0.00 0.00 40.89 4.30
2258 3131 9.181061 GTAGAAATCTAGTGATATACTCCCTCC 57.819 40.741 0.00 0.00 40.89 4.30
2259 3132 6.887545 AGAAATCTAGTGATATACTCCCTCCG 59.112 42.308 0.00 0.00 40.89 4.63
2260 3133 5.782677 ATCTAGTGATATACTCCCTCCGT 57.217 43.478 0.00 0.00 40.89 4.69
2261 3134 6.887886 ATCTAGTGATATACTCCCTCCGTA 57.112 41.667 0.00 0.00 40.89 4.02
2262 3135 6.692849 TCTAGTGATATACTCCCTCCGTAA 57.307 41.667 0.00 0.00 40.89 3.18
2263 3136 7.083062 TCTAGTGATATACTCCCTCCGTAAA 57.917 40.000 0.00 0.00 40.89 2.01
2264 3137 6.939163 TCTAGTGATATACTCCCTCCGTAAAC 59.061 42.308 0.00 0.00 40.89 2.01
2265 3138 5.703310 AGTGATATACTCCCTCCGTAAACT 58.297 41.667 0.00 0.00 33.17 2.66
2266 3139 6.845908 AGTGATATACTCCCTCCGTAAACTA 58.154 40.000 0.00 0.00 33.17 2.24
2267 3140 7.293073 AGTGATATACTCCCTCCGTAAACTAA 58.707 38.462 0.00 0.00 33.17 2.24
2268 3141 7.949006 AGTGATATACTCCCTCCGTAAACTAAT 59.051 37.037 0.00 0.00 33.17 1.73
2269 3142 9.236006 GTGATATACTCCCTCCGTAAACTAATA 57.764 37.037 0.00 0.00 0.00 0.98
2270 3143 9.986157 TGATATACTCCCTCCGTAAACTAATAT 57.014 33.333 0.00 0.00 0.00 1.28
2275 3148 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2276 3149 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
2277 3150 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
2278 3151 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
2279 3152 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
2280 3153 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2307 3180 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
2308 3181 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
2309 3182 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2310 3183 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
2311 3184 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
2328 3201 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2329 3202 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2330 3203 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2331 3204 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2332 3205 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2340 3213 6.742559 AGTTTACAGAGGGAGTACTTTTCA 57.257 37.500 0.00 0.00 0.00 2.69
2341 3214 7.317722 AGTTTACAGAGGGAGTACTTTTCAT 57.682 36.000 0.00 0.00 0.00 2.57
2342 3215 7.162082 AGTTTACAGAGGGAGTACTTTTCATG 58.838 38.462 0.00 0.00 0.00 3.07
2343 3216 6.928348 TTACAGAGGGAGTACTTTTCATGA 57.072 37.500 0.00 0.00 0.00 3.07
2344 3217 5.153950 ACAGAGGGAGTACTTTTCATGAC 57.846 43.478 0.00 0.00 0.00 3.06
2345 3218 4.593206 ACAGAGGGAGTACTTTTCATGACA 59.407 41.667 0.00 0.00 0.00 3.58
2346 3219 5.071788 ACAGAGGGAGTACTTTTCATGACAA 59.928 40.000 0.00 0.00 0.00 3.18
2347 3220 5.409826 CAGAGGGAGTACTTTTCATGACAAC 59.590 44.000 0.00 0.00 0.00 3.32
2348 3221 5.071788 AGAGGGAGTACTTTTCATGACAACA 59.928 40.000 0.00 0.00 0.00 3.33
2349 3222 5.063880 AGGGAGTACTTTTCATGACAACAC 58.936 41.667 0.00 0.00 0.00 3.32
2350 3223 4.819630 GGGAGTACTTTTCATGACAACACA 59.180 41.667 0.00 0.00 0.00 3.72
2351 3224 5.473504 GGGAGTACTTTTCATGACAACACAT 59.526 40.000 0.00 0.00 0.00 3.21
2352 3225 6.653320 GGGAGTACTTTTCATGACAACACATA 59.347 38.462 0.00 0.00 0.00 2.29
2353 3226 7.336931 GGGAGTACTTTTCATGACAACACATAT 59.663 37.037 0.00 0.00 0.00 1.78
2354 3227 8.730680 GGAGTACTTTTCATGACAACACATATT 58.269 33.333 0.00 0.00 0.00 1.28
2364 3237 9.460019 TCATGACAACACATATTTAATTCCTCA 57.540 29.630 0.00 0.00 0.00 3.86
2369 3242 9.787532 ACAACACATATTTAATTCCTCAAATCG 57.212 29.630 0.00 0.00 0.00 3.34
2375 3248 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
2376 3249 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
2378 3251 9.627123 ATTTAATTCCTCAAATCGATGACCTAA 57.373 29.630 0.00 0.00 0.00 2.69
2379 3252 9.456147 TTTAATTCCTCAAATCGATGACCTAAA 57.544 29.630 0.00 0.00 0.00 1.85
2380 3253 7.938140 AATTCCTCAAATCGATGACCTAAAA 57.062 32.000 0.00 0.00 0.00 1.52
2381 3254 6.737254 TTCCTCAAATCGATGACCTAAAAC 57.263 37.500 0.00 0.00 0.00 2.43
2382 3255 6.049955 TCCTCAAATCGATGACCTAAAACT 57.950 37.500 0.00 0.00 0.00 2.66
2383 3256 7.177832 TCCTCAAATCGATGACCTAAAACTA 57.822 36.000 0.00 0.00 0.00 2.24
2384 3257 7.039882 TCCTCAAATCGATGACCTAAAACTAC 58.960 38.462 0.00 0.00 0.00 2.73
2385 3258 6.816640 CCTCAAATCGATGACCTAAAACTACA 59.183 38.462 0.00 0.00 0.00 2.74
2386 3259 7.201530 CCTCAAATCGATGACCTAAAACTACAC 60.202 40.741 0.00 0.00 0.00 2.90
2387 3260 7.156000 TCAAATCGATGACCTAAAACTACACA 58.844 34.615 0.00 0.00 0.00 3.72
2388 3261 7.658167 TCAAATCGATGACCTAAAACTACACAA 59.342 33.333 0.00 0.00 0.00 3.33
2389 3262 7.972832 AATCGATGACCTAAAACTACACAAA 57.027 32.000 0.00 0.00 0.00 2.83
2390 3263 8.561738 AATCGATGACCTAAAACTACACAAAT 57.438 30.769 0.00 0.00 0.00 2.32
2391 3264 7.359262 TCGATGACCTAAAACTACACAAATG 57.641 36.000 0.00 0.00 0.00 2.32
2392 3265 7.156000 TCGATGACCTAAAACTACACAAATGA 58.844 34.615 0.00 0.00 0.00 2.57
2393 3266 7.117236 TCGATGACCTAAAACTACACAAATGAC 59.883 37.037 0.00 0.00 0.00 3.06
2394 3267 7.117812 CGATGACCTAAAACTACACAAATGACT 59.882 37.037 0.00 0.00 0.00 3.41
2395 3268 8.691661 ATGACCTAAAACTACACAAATGACTT 57.308 30.769 0.00 0.00 0.00 3.01
2396 3269 9.787435 ATGACCTAAAACTACACAAATGACTTA 57.213 29.630 0.00 0.00 0.00 2.24
2397 3270 9.787435 TGACCTAAAACTACACAAATGACTTAT 57.213 29.630 0.00 0.00 0.00 1.73
2403 3276 8.691661 AAACTACACAAATGACTTATTCACCT 57.308 30.769 0.00 0.00 36.92 4.00
2404 3277 9.787435 AAACTACACAAATGACTTATTCACCTA 57.213 29.630 0.00 0.00 36.92 3.08
2405 3278 9.436957 AACTACACAAATGACTTATTCACCTAG 57.563 33.333 0.00 0.00 36.92 3.02
2406 3279 8.812972 ACTACACAAATGACTTATTCACCTAGA 58.187 33.333 0.00 0.00 36.92 2.43
2407 3280 9.823647 CTACACAAATGACTTATTCACCTAGAT 57.176 33.333 0.00 0.00 36.92 1.98
2408 3281 8.498054 ACACAAATGACTTATTCACCTAGATG 57.502 34.615 0.00 0.00 36.92 2.90
2409 3282 7.554118 ACACAAATGACTTATTCACCTAGATGG 59.446 37.037 0.00 0.00 36.92 3.51
2410 3283 7.770433 CACAAATGACTTATTCACCTAGATGGA 59.230 37.037 0.00 0.00 36.92 3.41
2411 3284 7.989741 ACAAATGACTTATTCACCTAGATGGAG 59.010 37.037 0.00 0.00 36.92 3.86
2412 3285 6.678568 ATGACTTATTCACCTAGATGGAGG 57.321 41.667 0.00 0.00 42.89 4.30
2521 3394 4.142609 TCCTGTGGATTTAGCTCATCAC 57.857 45.455 7.86 4.10 0.00 3.06
2531 3406 6.995091 GGATTTAGCTCATCACCTACTCAATT 59.005 38.462 7.86 0.00 0.00 2.32
2579 3454 1.688197 AGTTTGTGTTGGAAGCCATGG 59.312 47.619 7.63 7.63 31.53 3.66
2583 3458 1.133513 TGTGTTGGAAGCCATGGACTT 60.134 47.619 18.40 18.05 31.53 3.01
2672 3547 0.042431 AGGCTCAGATCTGGGACACT 59.958 55.000 30.30 18.36 43.13 3.55
2678 3553 1.451028 GATCTGGGACACTGCTGGC 60.451 63.158 0.00 0.00 0.00 4.85
2816 3691 2.200067 CTTCGTGATCATGCTGACTCC 58.800 52.381 10.24 0.00 0.00 3.85
2861 3736 3.627395 AACAAGTCTGACCTGACACAA 57.373 42.857 13.08 0.00 39.27 3.33
2999 3874 5.854010 TCACAGAGGTCTATGGTATTGTC 57.146 43.478 0.00 0.00 0.00 3.18
3025 3900 3.790416 AAGCACTGGCCGCCAAAGA 62.790 57.895 14.45 0.00 42.56 2.52
3103 3978 0.035458 ACTGCCGGGAACTCAAAGAG 59.965 55.000 2.18 0.00 35.52 2.85
3226 4101 8.561738 TTCTACTCTTTTTGTTTCTCTGTTGT 57.438 30.769 0.00 0.00 0.00 3.32
3303 4178 9.262358 GGAAGTTAGATGTGTGTATTAGGATTC 57.738 37.037 0.00 0.00 0.00 2.52
3317 4192 8.112822 TGTATTAGGATTCTGTTCCATTTTCCA 58.887 33.333 0.00 0.00 38.32 3.53
3326 4201 7.452880 TCTGTTCCATTTTCCACTATGAAAG 57.547 36.000 0.00 0.00 35.77 2.62
3367 4325 9.817809 AATGTATGTCGGATTATACATCATACC 57.182 33.333 21.05 0.00 45.10 2.73
3369 4327 8.466798 TGTATGTCGGATTATACATCATACCTG 58.533 37.037 11.60 0.00 37.50 4.00
3468 4426 7.324178 ACTAGTTATGCTACTTCTGTCTTTGG 58.676 38.462 0.00 0.00 0.00 3.28
3483 4441 8.289939 TCTGTCTTTGGAGAAGTATTACGTAT 57.710 34.615 0.00 0.00 32.66 3.06
3516 4474 4.552166 ATGAGTTGTTGGCGCATTATAC 57.448 40.909 10.83 0.91 0.00 1.47
3523 4481 3.508012 TGTTGGCGCATTATACAACCTTT 59.492 39.130 18.16 0.00 41.74 3.11
3548 4506 7.957002 TGTTGGAAATTTATGTGTATTGTGGT 58.043 30.769 0.00 0.00 0.00 4.16
3589 6513 3.592059 TGAGGCGTGGTTTCAGTATTAC 58.408 45.455 0.00 0.00 0.00 1.89
3598 6522 4.010349 GGTTTCAGTATTACAAGGCAGCT 58.990 43.478 0.00 0.00 0.00 4.24
3624 6549 2.100989 CGGTAGCTTAGAAGGACACCT 58.899 52.381 0.00 0.00 33.87 4.00
3639 6564 7.829706 AGAAGGACACCTAAGATATTTGGTTTC 59.170 37.037 10.26 10.26 31.13 2.78
3643 6568 8.190784 GGACACCTAAGATATTTGGTTTCAATG 58.809 37.037 17.53 4.32 32.63 2.82
3695 6622 1.205893 AGGGTCAGATCAAAGCTCGAC 59.794 52.381 0.00 0.00 0.00 4.20
3699 6626 3.430098 GGTCAGATCAAAGCTCGACAGAT 60.430 47.826 0.00 0.00 0.00 2.90
3714 6641 0.813184 CAGATGAATGGCGCCAAACT 59.187 50.000 36.33 23.20 0.00 2.66
3716 6643 1.895131 AGATGAATGGCGCCAAACTTT 59.105 42.857 36.33 23.82 0.00 2.66
3731 6659 4.141680 CAAACTTTCGCGTTATCTGTGAC 58.858 43.478 5.77 0.00 0.00 3.67
3748 6676 3.181451 TGTGACAAGAGAGTGCCTCAAAT 60.181 43.478 5.21 0.00 44.40 2.32
3780 6708 2.498885 AGGTTGATGTACGGTAGAACCC 59.501 50.000 11.72 0.00 33.75 4.11
3784 6712 4.508551 TGATGTACGGTAGAACCCTAGA 57.491 45.455 0.00 0.00 33.75 2.43
3791 6719 2.490351 CGGTAGAACCCTAGATGGCCTA 60.490 54.545 3.32 0.00 33.75 3.93
3817 6745 3.838244 TCATAACTTGGAGGGGATTCG 57.162 47.619 0.00 0.00 0.00 3.34
3843 6771 1.703411 ACACACAAATCACCAAGGGG 58.297 50.000 0.00 0.00 41.29 4.79
3856 6784 1.545651 CCAAGGGGAACACTCCAAGAC 60.546 57.143 0.00 0.00 44.51 3.01
3879 6807 6.061441 ACAAGTTCAATCACACATCCACTAA 58.939 36.000 0.00 0.00 0.00 2.24
3955 6883 2.890945 AGGGTTGTTCTTTCCAAATCCG 59.109 45.455 0.00 0.00 0.00 4.18
3982 6910 5.397334 GGAGATGGGGGCTTGATTATCTATC 60.397 48.000 0.00 0.00 0.00 2.08
4083 7011 5.011023 GCCATATGTTTCAAGATTTAGGGGG 59.989 44.000 1.24 0.00 0.00 5.40
4107 7035 2.259505 GCACTCATTCTTGCTTCAGC 57.740 50.000 0.00 0.00 42.50 4.26
4111 7039 4.083110 GCACTCATTCTTGCTTCAGCTTTA 60.083 41.667 0.00 0.00 42.66 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.137543 GACAAGTCATGTTTGTCCTCCTT 58.862 43.478 23.43 3.41 45.40 3.36
14 15 2.649034 GGAGCGTCGGACAAGTCA 59.351 61.111 9.10 0.00 0.00 3.41
36 37 1.061799 CAGCAAAAGCACGATGACGC 61.062 55.000 0.00 0.00 43.96 5.19
37 38 1.061799 GCAGCAAAAGCACGATGACG 61.062 55.000 0.00 0.00 45.75 4.35
50 51 2.853159 CGATAGTGGTTGGCAGCAA 58.147 52.632 3.14 0.00 30.33 3.91
75 76 1.084370 GCGTCTATTCGTGGCTTGCT 61.084 55.000 0.00 0.00 0.00 3.91
84 85 0.436913 TGCGTTGTTGCGTCTATTCG 59.563 50.000 0.00 0.00 37.81 3.34
88 89 0.031585 AGTCTGCGTTGTTGCGTCTA 59.968 50.000 0.00 0.00 37.81 2.59
94 95 0.813610 TGGTGGAGTCTGCGTTGTTG 60.814 55.000 0.00 0.00 0.00 3.33
96 97 1.227556 GTGGTGGAGTCTGCGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
106 107 1.831652 GAGAGGTGGTGGTGGTGGAG 61.832 65.000 0.00 0.00 0.00 3.86
126 148 5.655893 ATTTCGTTGGAAGCATTGTTTTG 57.344 34.783 0.00 0.00 32.80 2.44
135 157 2.732282 GCAGCCTTATTTCGTTGGAAGC 60.732 50.000 0.00 0.00 32.80 3.86
139 161 1.173043 TGGCAGCCTTATTTCGTTGG 58.827 50.000 14.15 0.00 0.00 3.77
173 195 1.218230 GATCTGCCTCGTCGAATGGC 61.218 60.000 16.48 16.48 46.26 4.40
175 197 2.351253 CCTAGATCTGCCTCGTCGAATG 60.351 54.545 5.18 0.00 0.00 2.67
178 200 0.180642 ACCTAGATCTGCCTCGTCGA 59.819 55.000 5.18 0.00 0.00 4.20
188 210 5.843019 TTTCTGGGTGAAAACCTAGATCT 57.157 39.130 11.22 0.00 44.96 2.75
237 259 1.561542 AGGCATCACCGAGGAGATTTT 59.438 47.619 0.00 0.00 46.52 1.82
302 324 1.222115 ACCAAAGTCTTGCTCGACGC 61.222 55.000 0.00 0.58 38.90 5.19
303 325 0.784778 GACCAAAGTCTTGCTCGACG 59.215 55.000 0.00 0.00 40.10 5.12
319 584 2.488820 GTGTAGACTCGCCGGACC 59.511 66.667 5.05 0.00 0.00 4.46
322 587 0.100146 GTTAGGTGTAGACTCGCCGG 59.900 60.000 0.00 0.00 42.18 6.13
327 592 0.525029 GCGGCGTTAGGTGTAGACTC 60.525 60.000 9.37 0.00 0.00 3.36
329 594 1.074872 GTGCGGCGTTAGGTGTAGAC 61.075 60.000 9.37 0.00 0.00 2.59
350 615 0.804989 GTGTGTGGTCTGCTAATGGC 59.195 55.000 0.00 0.00 42.22 4.40
354 619 1.696884 TGATGGTGTGTGGTCTGCTAA 59.303 47.619 0.00 0.00 0.00 3.09
355 620 1.001974 GTGATGGTGTGTGGTCTGCTA 59.998 52.381 0.00 0.00 0.00 3.49
377 642 1.300931 GTGCTGGAGTTGAGCGACA 60.301 57.895 0.00 0.00 39.47 4.35
418 683 1.684386 CCTGGGTTGCTTTTGGTGCA 61.684 55.000 0.00 0.00 38.80 4.57
427 692 3.831637 TTGGGTGCCTGGGTTGCT 61.832 61.111 0.00 0.00 0.00 3.91
527 1261 4.662961 CCGATGATAGCGGCGGCA 62.663 66.667 19.21 4.99 42.55 5.69
536 1270 2.523168 TGGCCGGCTCCGATGATA 60.523 61.111 28.56 0.00 42.83 2.15
564 1298 2.362369 CGTCACCTCAGGGGCTCAT 61.362 63.158 0.00 0.00 39.10 2.90
609 1343 4.530857 CAGATCCACCGCCGTCCC 62.531 72.222 0.00 0.00 0.00 4.46
624 1358 1.244019 CGCCCCCTTTGGAAACTCAG 61.244 60.000 0.00 0.00 35.39 3.35
627 1361 1.228459 GTCGCCCCCTTTGGAAACT 60.228 57.895 0.00 0.00 35.39 2.66
629 1363 2.281900 CGTCGCCCCCTTTGGAAA 60.282 61.111 0.00 0.00 35.39 3.13
631 1365 4.323477 CACGTCGCCCCCTTTGGA 62.323 66.667 0.00 0.00 35.39 3.53
647 1383 0.603065 CATCACACACTCGACTCCCA 59.397 55.000 0.00 0.00 0.00 4.37
651 1387 2.365617 AGTTTCCATCACACACTCGACT 59.634 45.455 0.00 0.00 0.00 4.18
674 1410 8.357402 TCGTAGCTATGACACATGTAAATGTAT 58.643 33.333 11.74 0.00 32.74 2.29
680 1416 4.496840 CGGTCGTAGCTATGACACATGTAA 60.497 45.833 35.46 4.99 42.56 2.41
696 1432 0.390124 GGGGTTGATATGCGGTCGTA 59.610 55.000 0.00 0.00 0.00 3.43
704 1440 1.299541 GCTGTCACGGGGTTGATATG 58.700 55.000 0.00 0.00 0.00 1.78
715 1451 1.386748 CGATGTGTACTTGCTGTCACG 59.613 52.381 0.00 0.00 32.93 4.35
716 1452 2.672714 TCGATGTGTACTTGCTGTCAC 58.327 47.619 0.00 0.00 0.00 3.67
717 1453 3.378911 TTCGATGTGTACTTGCTGTCA 57.621 42.857 0.00 0.00 0.00 3.58
718 1454 4.928661 ATTTCGATGTGTACTTGCTGTC 57.071 40.909 0.00 0.00 0.00 3.51
719 1455 5.720202 TCTATTTCGATGTGTACTTGCTGT 58.280 37.500 0.00 0.00 0.00 4.40
720 1456 6.470160 GTTCTATTTCGATGTGTACTTGCTG 58.530 40.000 0.00 0.00 0.00 4.41
721 1457 5.288712 CGTTCTATTTCGATGTGTACTTGCT 59.711 40.000 0.00 0.00 0.00 3.91
722 1458 5.481472 CGTTCTATTTCGATGTGTACTTGC 58.519 41.667 0.00 0.00 0.00 4.01
723 1459 5.803461 TCCGTTCTATTTCGATGTGTACTTG 59.197 40.000 0.00 0.00 0.00 3.16
724 1460 5.957798 TCCGTTCTATTTCGATGTGTACTT 58.042 37.500 0.00 0.00 0.00 2.24
725 1461 5.571784 TCCGTTCTATTTCGATGTGTACT 57.428 39.130 0.00 0.00 0.00 2.73
726 1462 6.636666 TTTCCGTTCTATTTCGATGTGTAC 57.363 37.500 0.00 0.00 0.00 2.90
727 1463 7.010738 GGAATTTCCGTTCTATTTCGATGTGTA 59.989 37.037 0.00 0.00 0.00 2.90
729 1465 6.037172 AGGAATTTCCGTTCTATTTCGATGTG 59.963 38.462 9.77 0.00 42.75 3.21
730 1466 6.113411 AGGAATTTCCGTTCTATTTCGATGT 58.887 36.000 9.77 0.00 42.75 3.06
731 1467 6.604735 AGGAATTTCCGTTCTATTTCGATG 57.395 37.500 9.77 0.00 42.75 3.84
732 1468 6.821665 TCAAGGAATTTCCGTTCTATTTCGAT 59.178 34.615 9.77 0.00 42.75 3.59
733 1469 6.167685 TCAAGGAATTTCCGTTCTATTTCGA 58.832 36.000 9.77 0.00 42.75 3.71
734 1470 6.417191 TCAAGGAATTTCCGTTCTATTTCG 57.583 37.500 9.77 0.00 42.75 3.46
736 1472 6.663523 ACCATCAAGGAATTTCCGTTCTATTT 59.336 34.615 9.77 0.00 42.75 1.40
738 1474 5.590259 CACCATCAAGGAATTTCCGTTCTAT 59.410 40.000 9.77 0.00 42.75 1.98
739 1475 4.941263 CACCATCAAGGAATTTCCGTTCTA 59.059 41.667 9.77 0.00 42.75 2.10
740 1476 3.758554 CACCATCAAGGAATTTCCGTTCT 59.241 43.478 9.77 0.00 42.75 3.01
741 1477 3.119495 CCACCATCAAGGAATTTCCGTTC 60.119 47.826 9.77 0.00 42.75 3.95
742 1478 2.825532 CCACCATCAAGGAATTTCCGTT 59.174 45.455 9.77 2.59 42.75 4.44
743 1479 2.446435 CCACCATCAAGGAATTTCCGT 58.554 47.619 9.77 3.81 42.75 4.69
745 1481 1.482182 GCCCACCATCAAGGAATTTCC 59.518 52.381 7.39 7.39 41.22 3.13
746 1482 2.167075 CAGCCCACCATCAAGGAATTTC 59.833 50.000 0.00 0.00 41.22 2.17
748 1484 1.077663 ACAGCCCACCATCAAGGAATT 59.922 47.619 0.00 0.00 41.22 2.17
750 1486 0.251297 CACAGCCCACCATCAAGGAA 60.251 55.000 0.00 0.00 41.22 3.36
751 1487 1.133181 TCACAGCCCACCATCAAGGA 61.133 55.000 0.00 0.00 41.22 3.36
753 1489 1.747355 GATTCACAGCCCACCATCAAG 59.253 52.381 0.00 0.00 0.00 3.02
754 1490 1.838112 GATTCACAGCCCACCATCAA 58.162 50.000 0.00 0.00 0.00 2.57
755 1491 0.392863 CGATTCACAGCCCACCATCA 60.393 55.000 0.00 0.00 0.00 3.07
756 1492 0.107703 TCGATTCACAGCCCACCATC 60.108 55.000 0.00 0.00 0.00 3.51
757 1493 0.392998 GTCGATTCACAGCCCACCAT 60.393 55.000 0.00 0.00 0.00 3.55
758 1494 1.003839 GTCGATTCACAGCCCACCA 60.004 57.895 0.00 0.00 0.00 4.17
760 1496 1.464997 GAAAGTCGATTCACAGCCCAC 59.535 52.381 0.00 0.00 0.00 4.61
761 1497 1.808411 GAAAGTCGATTCACAGCCCA 58.192 50.000 0.00 0.00 0.00 5.36
762 1498 0.721718 CGAAAGTCGATTCACAGCCC 59.278 55.000 0.00 0.00 43.74 5.19
763 1499 1.429463 ACGAAAGTCGATTCACAGCC 58.571 50.000 4.40 0.00 44.19 4.85
830 1661 1.915769 GAGGAGTGGTGGCCTGACT 60.916 63.158 3.32 2.50 33.84 3.41
857 1688 3.074412 GTGGCGAATGAAGAAAAGGAGA 58.926 45.455 0.00 0.00 0.00 3.71
858 1689 2.162408 GGTGGCGAATGAAGAAAAGGAG 59.838 50.000 0.00 0.00 0.00 3.69
859 1690 2.159382 GGTGGCGAATGAAGAAAAGGA 58.841 47.619 0.00 0.00 0.00 3.36
865 1697 4.160329 AGATATAGGGTGGCGAATGAAGA 58.840 43.478 0.00 0.00 0.00 2.87
877 1709 5.073965 AGAGAAGACGAAGGAGATATAGGGT 59.926 44.000 0.00 0.00 0.00 4.34
878 1710 5.566469 AGAGAAGACGAAGGAGATATAGGG 58.434 45.833 0.00 0.00 0.00 3.53
879 1711 5.646360 GGAGAGAAGACGAAGGAGATATAGG 59.354 48.000 0.00 0.00 0.00 2.57
917 1753 2.202932 CGAGCGTGGATCCCCTTG 60.203 66.667 9.90 3.25 0.00 3.61
965 1801 6.043243 TCACCTTCTACTCTGAGACCAAAAAT 59.957 38.462 12.44 0.00 0.00 1.82
1119 1955 1.450312 GCCGATGGTGGACTTGGAG 60.450 63.158 0.00 0.00 0.00 3.86
1128 1964 2.047274 AACTCCACGCCGATGGTG 60.047 61.111 0.00 0.00 40.95 4.17
1200 2036 2.666508 CGTGTCGAACATCTTCCGATTT 59.333 45.455 0.00 0.00 34.71 2.17
1237 2073 2.207924 ATCGGTCCGAGGCCATACC 61.208 63.158 20.50 5.58 39.91 2.73
1245 2081 0.455815 TGTGTCATCATCGGTCCGAG 59.544 55.000 20.50 11.71 39.91 4.63
1391 2227 2.551355 TCTGAAGTCTCAATCGAGCG 57.449 50.000 0.00 0.00 39.30 5.03
1397 2233 9.730705 TTTGATAGAACATTCTGAAGTCTCAAT 57.269 29.630 4.34 0.00 38.19 2.57
1429 2265 7.027874 AGTTTGTTCCTAATGATCCACCTAA 57.972 36.000 0.00 0.00 0.00 2.69
1499 2335 6.897966 ACTAGTCTGATGAATAAGGGAAGACA 59.102 38.462 0.00 0.00 36.00 3.41
1625 2461 8.877864 ATCAACCTAACAATCAGTCCATAAAA 57.122 30.769 0.00 0.00 0.00 1.52
1628 2464 6.318648 GCAATCAACCTAACAATCAGTCCATA 59.681 38.462 0.00 0.00 0.00 2.74
1744 2617 9.787532 ACAATAATAATAATGGCGATGCATAAC 57.212 29.630 0.00 0.00 0.00 1.89
1762 2635 5.464057 CGGCGTGGTGAGAATAACAATAATA 59.536 40.000 0.00 0.00 0.00 0.98
1766 2639 2.006888 CGGCGTGGTGAGAATAACAAT 58.993 47.619 0.00 0.00 0.00 2.71
1785 2658 1.915614 GATTGCTCACCACACCTGCG 61.916 60.000 0.00 0.00 0.00 5.18
1794 2667 8.761575 TTTGAATTATTTGAAGATTGCTCACC 57.238 30.769 0.00 0.00 0.00 4.02
1812 2685 8.348507 ACAACAACAACAACAACAATTTGAATT 58.651 25.926 2.79 0.00 36.48 2.17
1835 2708 7.924541 AGTACTAAATGGAGGGATAACAACAA 58.075 34.615 0.00 0.00 0.00 2.83
1836 2709 7.504926 AGTACTAAATGGAGGGATAACAACA 57.495 36.000 0.00 0.00 0.00 3.33
1885 2758 8.058667 TGATGGCCTTATATAGATGCAAAATG 57.941 34.615 3.32 0.00 0.00 2.32
1900 2773 4.442893 CCTCGATTACTGTTGATGGCCTTA 60.443 45.833 3.32 0.00 0.00 2.69
1908 2781 3.410631 TTTGCCCTCGATTACTGTTGA 57.589 42.857 0.00 0.00 0.00 3.18
1917 2790 9.696917 GAAAATATCATTAATTTTGCCCTCGAT 57.303 29.630 0.00 0.00 36.82 3.59
1918 2791 8.912988 AGAAAATATCATTAATTTTGCCCTCGA 58.087 29.630 0.00 0.00 36.82 4.04
1919 2792 9.533253 AAGAAAATATCATTAATTTTGCCCTCG 57.467 29.630 0.00 0.00 36.82 4.63
1971 2844 6.752815 TGTGTTATTTTATGACTGCATGCATG 59.247 34.615 22.97 22.70 35.94 4.06
1988 2861 9.463443 GCAAAGAAAGAATAGTTGTGTGTTATT 57.537 29.630 0.00 0.00 0.00 1.40
1989 2862 8.629158 TGCAAAGAAAGAATAGTTGTGTGTTAT 58.371 29.630 0.00 0.00 0.00 1.89
2006 2879 1.798283 GCCACATGCATGCAAAGAAA 58.202 45.000 26.68 0.00 40.77 2.52
2022 2895 5.242393 GTCTACTGGGATAGTTTATACGCCA 59.758 44.000 0.00 0.00 40.89 5.69
2030 2903 8.990163 TTTCTTTTTGTCTACTGGGATAGTTT 57.010 30.769 0.00 0.00 40.89 2.66
2033 2906 8.622948 ACTTTTCTTTTTGTCTACTGGGATAG 57.377 34.615 0.00 0.00 0.00 2.08
2044 2917 6.704512 TGCAAGTCAACTTTTCTTTTTGTC 57.295 33.333 0.00 0.00 33.11 3.18
2115 2988 2.225963 CCGAGACGCAGGTAGTATAAGG 59.774 54.545 0.00 0.00 0.00 2.69
2119 2992 1.022735 CACCGAGACGCAGGTAGTAT 58.977 55.000 0.00 0.00 39.00 2.12
2120 2993 0.036105 TCACCGAGACGCAGGTAGTA 60.036 55.000 0.00 0.00 39.00 1.82
2121 2994 0.892358 TTCACCGAGACGCAGGTAGT 60.892 55.000 0.00 0.00 39.00 2.73
2122 2995 0.456221 ATTCACCGAGACGCAGGTAG 59.544 55.000 0.00 0.00 39.00 3.18
2123 2996 1.753930 TATTCACCGAGACGCAGGTA 58.246 50.000 0.00 0.00 39.00 3.08
2124 2997 0.892755 TTATTCACCGAGACGCAGGT 59.107 50.000 0.00 0.00 42.34 4.00
2125 2998 1.135083 ACTTATTCACCGAGACGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
2126 2999 2.186076 GACTTATTCACCGAGACGCAG 58.814 52.381 0.00 0.00 0.00 5.18
2127 3000 1.542472 TGACTTATTCACCGAGACGCA 59.458 47.619 0.00 0.00 0.00 5.24
2128 3001 2.273370 TGACTTATTCACCGAGACGC 57.727 50.000 0.00 0.00 0.00 5.19
2129 3002 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
2130 3003 3.243177 GCGAATGACTTATTCACCGAGAC 59.757 47.826 0.00 0.00 44.42 3.36
2131 3004 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
2132 3005 2.216488 CGCGAATGACTTATTCACCGAG 59.784 50.000 0.00 0.00 44.42 4.63
2133 3006 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
2134 3007 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
2135 3008 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
2136 3009 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
2137 3010 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
2138 3011 6.403615 CAAGAACTACGCGAATGACTTATTC 58.596 40.000 15.93 3.24 41.46 1.75
2139 3012 5.291128 CCAAGAACTACGCGAATGACTTATT 59.709 40.000 15.93 0.00 0.00 1.40
2140 3013 4.804139 CCAAGAACTACGCGAATGACTTAT 59.196 41.667 15.93 0.00 0.00 1.73
2141 3014 4.171005 CCAAGAACTACGCGAATGACTTA 58.829 43.478 15.93 0.00 0.00 2.24
2142 3015 2.993899 CCAAGAACTACGCGAATGACTT 59.006 45.455 15.93 9.86 0.00 3.01
2143 3016 2.029290 ACCAAGAACTACGCGAATGACT 60.029 45.455 15.93 3.36 0.00 3.41
2144 3017 2.334838 ACCAAGAACTACGCGAATGAC 58.665 47.619 15.93 0.66 0.00 3.06
2145 3018 2.602878 GACCAAGAACTACGCGAATGA 58.397 47.619 15.93 0.00 0.00 2.57
2146 3019 1.320555 CGACCAAGAACTACGCGAATG 59.679 52.381 15.93 4.47 0.00 2.67
2147 3020 1.200716 TCGACCAAGAACTACGCGAAT 59.799 47.619 15.93 0.00 0.00 3.34
2148 3021 0.592637 TCGACCAAGAACTACGCGAA 59.407 50.000 15.93 0.00 0.00 4.70
2149 3022 0.110056 GTCGACCAAGAACTACGCGA 60.110 55.000 15.93 0.00 0.00 5.87
2150 3023 1.393597 CGTCGACCAAGAACTACGCG 61.394 60.000 10.58 3.53 0.00 6.01
2151 3024 0.110056 TCGTCGACCAAGAACTACGC 60.110 55.000 10.58 0.00 0.00 4.42
2152 3025 2.539346 ATCGTCGACCAAGAACTACG 57.461 50.000 10.58 0.00 0.00 3.51
2153 3026 5.860716 AGTTAAATCGTCGACCAAGAACTAC 59.139 40.000 10.58 0.00 0.00 2.73
2154 3027 6.017400 AGTTAAATCGTCGACCAAGAACTA 57.983 37.500 10.58 0.00 0.00 2.24
2155 3028 4.879598 AGTTAAATCGTCGACCAAGAACT 58.120 39.130 10.58 10.32 0.00 3.01
2156 3029 6.750963 AGATAGTTAAATCGTCGACCAAGAAC 59.249 38.462 10.58 8.24 0.00 3.01
2157 3030 6.860080 AGATAGTTAAATCGTCGACCAAGAA 58.140 36.000 10.58 0.00 0.00 2.52
2158 3031 6.446781 AGATAGTTAAATCGTCGACCAAGA 57.553 37.500 10.58 1.59 0.00 3.02
2159 3032 8.624701 TTTAGATAGTTAAATCGTCGACCAAG 57.375 34.615 10.58 0.00 0.00 3.61
2222 3095 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
2223 3096 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
2224 3097 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
2225 3098 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
2226 3099 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
2227 3100 9.217278 GAGTATATCACTAGATTTCTACACGGA 57.783 37.037 0.00 0.00 37.72 4.69
2228 3101 8.452534 GGAGTATATCACTAGATTTCTACACGG 58.547 40.741 0.00 0.00 37.72 4.94
2229 3102 8.452534 GGGAGTATATCACTAGATTTCTACACG 58.547 40.741 0.00 0.00 37.72 4.49
2230 3103 9.523168 AGGGAGTATATCACTAGATTTCTACAC 57.477 37.037 0.00 0.00 41.08 2.90
2231 3104 9.742144 GAGGGAGTATATCACTAGATTTCTACA 57.258 37.037 0.00 0.00 43.76 2.74
2232 3105 9.181061 GGAGGGAGTATATCACTAGATTTCTAC 57.819 40.741 0.00 0.00 43.76 2.59
2233 3106 8.047911 CGGAGGGAGTATATCACTAGATTTCTA 58.952 40.741 0.00 0.00 43.76 2.10
2234 3107 6.887545 CGGAGGGAGTATATCACTAGATTTCT 59.112 42.308 0.00 0.00 43.76 2.52
2235 3108 6.660094 ACGGAGGGAGTATATCACTAGATTTC 59.340 42.308 0.00 0.00 43.76 2.17
2236 3109 6.553857 ACGGAGGGAGTATATCACTAGATTT 58.446 40.000 0.00 0.00 43.76 2.17
2237 3110 6.142259 ACGGAGGGAGTATATCACTAGATT 57.858 41.667 0.00 0.00 43.76 2.40
2238 3111 5.782677 ACGGAGGGAGTATATCACTAGAT 57.217 43.478 0.00 0.00 43.76 1.98
2239 3112 6.692849 TTACGGAGGGAGTATATCACTAGA 57.307 41.667 0.00 0.00 43.76 2.43
2240 3113 6.941436 AGTTTACGGAGGGAGTATATCACTAG 59.059 42.308 0.00 0.00 43.76 2.57
2241 3114 6.845908 AGTTTACGGAGGGAGTATATCACTA 58.154 40.000 0.00 0.00 43.76 2.74
2243 3116 7.516198 TTAGTTTACGGAGGGAGTATATCAC 57.484 40.000 0.00 0.00 0.00 3.06
2244 3117 9.986157 ATATTAGTTTACGGAGGGAGTATATCA 57.014 33.333 0.00 0.00 0.00 2.15
2249 3122 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2250 3123 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
2251 3124 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
2252 3125 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
2253 3126 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
2254 3127 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
2282 3155 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
2283 3156 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2284 3157 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2285 3158 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2302 3175 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2303 3176 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2304 3177 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2305 3178 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2306 3179 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2314 3187 8.877195 TGAAAAGTACTCCCTCTGTAAACTAAT 58.123 33.333 0.00 0.00 0.00 1.73
2315 3188 8.253867 TGAAAAGTACTCCCTCTGTAAACTAA 57.746 34.615 0.00 0.00 0.00 2.24
2316 3189 7.844493 TGAAAAGTACTCCCTCTGTAAACTA 57.156 36.000 0.00 0.00 0.00 2.24
2317 3190 6.742559 TGAAAAGTACTCCCTCTGTAAACT 57.257 37.500 0.00 0.00 0.00 2.66
2318 3191 7.117956 GTCATGAAAAGTACTCCCTCTGTAAAC 59.882 40.741 0.00 0.00 0.00 2.01
2319 3192 7.159372 GTCATGAAAAGTACTCCCTCTGTAAA 58.841 38.462 0.00 0.00 0.00 2.01
2320 3193 6.269077 TGTCATGAAAAGTACTCCCTCTGTAA 59.731 38.462 0.00 0.00 0.00 2.41
2321 3194 5.778241 TGTCATGAAAAGTACTCCCTCTGTA 59.222 40.000 0.00 0.00 0.00 2.74
2322 3195 4.593206 TGTCATGAAAAGTACTCCCTCTGT 59.407 41.667 0.00 0.00 0.00 3.41
2323 3196 5.152623 TGTCATGAAAAGTACTCCCTCTG 57.847 43.478 0.00 0.00 0.00 3.35
2324 3197 5.071788 TGTTGTCATGAAAAGTACTCCCTCT 59.928 40.000 0.00 0.00 0.00 3.69
2325 3198 5.179555 GTGTTGTCATGAAAAGTACTCCCTC 59.820 44.000 0.00 0.00 0.00 4.30
2326 3199 5.063880 GTGTTGTCATGAAAAGTACTCCCT 58.936 41.667 0.00 0.00 0.00 4.20
2327 3200 4.819630 TGTGTTGTCATGAAAAGTACTCCC 59.180 41.667 0.00 0.00 0.00 4.30
2328 3201 6.560253 ATGTGTTGTCATGAAAAGTACTCC 57.440 37.500 0.00 0.00 0.00 3.85
2338 3211 9.460019 TGAGGAATTAAATATGTGTTGTCATGA 57.540 29.630 0.00 0.00 0.00 3.07
2343 3216 9.787532 CGATTTGAGGAATTAAATATGTGTTGT 57.212 29.630 0.00 0.00 0.00 3.32
2349 3222 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
2350 3223 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
2352 3225 9.627123 TTAGGTCATCGATTTGAGGAATTAAAT 57.373 29.630 0.00 0.00 39.46 1.40
2353 3226 9.456147 TTTAGGTCATCGATTTGAGGAATTAAA 57.544 29.630 0.00 0.00 39.46 1.52
2354 3227 9.456147 TTTTAGGTCATCGATTTGAGGAATTAA 57.544 29.630 0.00 0.00 39.46 1.40
2355 3228 8.889717 GTTTTAGGTCATCGATTTGAGGAATTA 58.110 33.333 0.00 0.00 39.46 1.40
2356 3229 7.611855 AGTTTTAGGTCATCGATTTGAGGAATT 59.388 33.333 0.00 0.00 39.46 2.17
2357 3230 7.112779 AGTTTTAGGTCATCGATTTGAGGAAT 58.887 34.615 0.00 0.00 39.46 3.01
2358 3231 6.472887 AGTTTTAGGTCATCGATTTGAGGAA 58.527 36.000 0.00 0.00 39.46 3.36
2359 3232 6.049955 AGTTTTAGGTCATCGATTTGAGGA 57.950 37.500 0.00 0.00 34.44 3.71
2360 3233 6.816640 TGTAGTTTTAGGTCATCGATTTGAGG 59.183 38.462 0.00 0.00 0.00 3.86
2361 3234 7.330946 TGTGTAGTTTTAGGTCATCGATTTGAG 59.669 37.037 0.00 0.00 0.00 3.02
2362 3235 7.156000 TGTGTAGTTTTAGGTCATCGATTTGA 58.844 34.615 0.00 0.00 0.00 2.69
2363 3236 7.359262 TGTGTAGTTTTAGGTCATCGATTTG 57.641 36.000 0.00 0.00 0.00 2.32
2364 3237 7.972832 TTGTGTAGTTTTAGGTCATCGATTT 57.027 32.000 0.00 0.00 0.00 2.17
2365 3238 7.972832 TTTGTGTAGTTTTAGGTCATCGATT 57.027 32.000 0.00 0.00 0.00 3.34
2366 3239 7.822334 TCATTTGTGTAGTTTTAGGTCATCGAT 59.178 33.333 0.00 0.00 0.00 3.59
2367 3240 7.117236 GTCATTTGTGTAGTTTTAGGTCATCGA 59.883 37.037 0.00 0.00 0.00 3.59
2368 3241 7.117812 AGTCATTTGTGTAGTTTTAGGTCATCG 59.882 37.037 0.00 0.00 0.00 3.84
2369 3242 8.324163 AGTCATTTGTGTAGTTTTAGGTCATC 57.676 34.615 0.00 0.00 0.00 2.92
2370 3243 8.691661 AAGTCATTTGTGTAGTTTTAGGTCAT 57.308 30.769 0.00 0.00 0.00 3.06
2371 3244 9.787435 ATAAGTCATTTGTGTAGTTTTAGGTCA 57.213 29.630 0.00 0.00 0.00 4.02
2377 3250 9.131791 AGGTGAATAAGTCATTTGTGTAGTTTT 57.868 29.630 0.00 0.00 38.90 2.43
2378 3251 8.691661 AGGTGAATAAGTCATTTGTGTAGTTT 57.308 30.769 0.00 0.00 38.90 2.66
2379 3252 9.436957 CTAGGTGAATAAGTCATTTGTGTAGTT 57.563 33.333 0.00 0.00 38.90 2.24
2380 3253 8.812972 TCTAGGTGAATAAGTCATTTGTGTAGT 58.187 33.333 0.00 0.00 38.90 2.73
2381 3254 9.823647 ATCTAGGTGAATAAGTCATTTGTGTAG 57.176 33.333 0.00 0.00 38.90 2.74
2382 3255 9.599866 CATCTAGGTGAATAAGTCATTTGTGTA 57.400 33.333 0.00 0.00 38.90 2.90
2383 3256 7.554118 CCATCTAGGTGAATAAGTCATTTGTGT 59.446 37.037 3.99 0.00 38.90 3.72
2384 3257 7.770433 TCCATCTAGGTGAATAAGTCATTTGTG 59.230 37.037 3.99 0.00 38.90 3.33
2385 3258 7.861629 TCCATCTAGGTGAATAAGTCATTTGT 58.138 34.615 3.99 0.00 38.90 2.83
2386 3259 7.443575 CCTCCATCTAGGTGAATAAGTCATTTG 59.556 40.741 3.99 0.00 38.90 2.32
2387 3260 7.512992 CCTCCATCTAGGTGAATAAGTCATTT 58.487 38.462 3.99 0.00 38.90 2.32
2388 3261 7.072263 CCTCCATCTAGGTGAATAAGTCATT 57.928 40.000 3.99 0.00 38.90 2.57
2389 3262 6.678568 CCTCCATCTAGGTGAATAAGTCAT 57.321 41.667 3.99 0.00 38.90 3.06
2407 3280 9.455144 TCCCTTCATTTTTATATACTACCTCCA 57.545 33.333 0.00 0.00 0.00 3.86
2408 3281 9.945904 CTCCCTTCATTTTTATATACTACCTCC 57.054 37.037 0.00 0.00 0.00 4.30
2475 3348 0.667993 GGCACTGCTGTTGCACTAAA 59.332 50.000 15.84 0.00 45.31 1.85
2672 3547 1.990060 GTACCTCTCCTGGCCAGCA 60.990 63.158 28.39 12.88 0.00 4.41
2678 3553 1.541310 TTGCACGGTACCTCTCCTGG 61.541 60.000 10.90 0.00 0.00 4.45
2816 3691 3.303791 CGACCATCATGATGACAATGCTG 60.304 47.826 32.71 17.48 41.20 4.41
2999 3874 0.318107 CGGCCAGTGCTTTCTTGTTG 60.318 55.000 2.24 0.00 37.74 3.33
3226 4101 1.067142 GTGTACTCCAGGATGTTCGCA 60.067 52.381 0.00 0.00 0.00 5.10
3303 4178 7.219484 ACTTTCATAGTGGAAAATGGAACAG 57.781 36.000 0.00 0.00 37.50 3.16
3344 4302 8.683615 TCAGGTATGATGTATAATCCGACATAC 58.316 37.037 0.00 0.00 36.42 2.39
3350 4308 8.353684 GTCCTATCAGGTATGATGTATAATCCG 58.646 40.741 1.04 0.00 45.89 4.18
3367 4325 5.334879 CGAAACTTGTTTTGGGTCCTATCAG 60.335 44.000 5.75 0.00 0.00 2.90
3369 4327 4.517832 ACGAAACTTGTTTTGGGTCCTATC 59.482 41.667 15.40 0.00 0.00 2.08
3468 4426 5.910614 ACCCACCAATACGTAATACTTCTC 58.089 41.667 0.00 0.00 0.00 2.87
3483 4441 2.344592 ACAACTCATAGGACCCACCAA 58.655 47.619 0.00 0.00 42.04 3.67
3523 4481 7.957002 ACCACAATACACATAAATTTCCAACA 58.043 30.769 0.00 0.00 0.00 3.33
3553 6477 7.224297 ACCACGCCTCATATTACTAATTCAAT 58.776 34.615 0.00 0.00 0.00 2.57
3573 6497 3.749088 TGCCTTGTAATACTGAAACCACG 59.251 43.478 0.00 0.00 0.00 4.94
3589 6513 2.786539 TACCGCTGTCAGCTGCCTTG 62.787 60.000 22.13 5.77 39.60 3.61
3609 6534 7.442666 CCAAATATCTTAGGTGTCCTTCTAAGC 59.557 40.741 0.00 0.00 41.10 3.09
3624 6549 9.368674 CATGCAACATTGAAACCAAATATCTTA 57.631 29.630 0.00 0.00 0.00 2.10
3639 6564 3.812156 ATCACCATCCATGCAACATTG 57.188 42.857 0.00 0.00 0.00 2.82
3643 6568 3.402110 TCGATATCACCATCCATGCAAC 58.598 45.455 3.12 0.00 0.00 4.17
3695 6622 0.813184 AGTTTGGCGCCATTCATCTG 59.187 50.000 33.25 0.00 0.00 2.90
3699 6626 0.039617 CGAAAGTTTGGCGCCATTCA 60.040 50.000 33.25 13.76 0.00 2.57
3714 6641 3.644823 TCTTGTCACAGATAACGCGAAA 58.355 40.909 15.93 0.00 0.00 3.46
3716 6643 2.486592 TCTCTTGTCACAGATAACGCGA 59.513 45.455 15.93 0.00 0.00 5.87
3723 6651 2.255406 AGGCACTCTCTTGTCACAGAT 58.745 47.619 0.00 0.00 0.00 2.90
3748 6676 4.214545 CGTACATCAACCTGCCTTTTAACA 59.785 41.667 0.00 0.00 0.00 2.41
3780 6708 8.997323 CAAGTTATGAAAGATTAGGCCATCTAG 58.003 37.037 5.01 0.00 32.84 2.43
3784 6712 6.672593 TCCAAGTTATGAAAGATTAGGCCAT 58.327 36.000 5.01 0.00 0.00 4.40
3791 6719 5.796502 TCCCCTCCAAGTTATGAAAGATT 57.203 39.130 0.00 0.00 0.00 2.40
3843 6771 5.296780 TGATTGAACTTGTCTTGGAGTGTTC 59.703 40.000 0.00 0.00 35.68 3.18
3856 6784 6.558771 TTAGTGGATGTGTGATTGAACTTG 57.441 37.500 0.00 0.00 0.00 3.16
3901 6829 5.988310 TTCCTCTTGTCGACCTTGTATTA 57.012 39.130 14.12 0.00 0.00 0.98
3955 6883 0.849417 ATCAAGCCCCCATCTCCTTC 59.151 55.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.