Multiple sequence alignment - TraesCS1B01G137400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G137400 chr1B 100.000 2791 0 0 857 3647 175429799 175427009 0.000000e+00 5155.0
1 TraesCS1B01G137400 chr1B 83.000 2247 305 38 858 3074 511973139 511975338 0.000000e+00 1962.0
2 TraesCS1B01G137400 chr1B 100.000 530 0 0 1 530 175430655 175430126 0.000000e+00 979.0
3 TraesCS1B01G137400 chr1B 83.784 74 5 5 198 267 589056670 589056600 3.040000e-06 63.9
4 TraesCS1B01G137400 chr1D 97.940 2427 49 1 857 3283 114366030 114363605 0.000000e+00 4204.0
5 TraesCS1B01G137400 chr1D 82.807 2280 299 55 858 3107 381973808 381976024 0.000000e+00 1953.0
6 TraesCS1B01G137400 chr1D 78.788 132 24 4 3155 3283 466373934 466374064 6.490000e-13 86.1
7 TraesCS1B01G137400 chr1D 95.000 40 1 1 3244 3283 320402797 320402759 1.090000e-05 62.1
8 TraesCS1B01G137400 chr1A 97.281 2427 66 0 857 3283 124897886 124895460 0.000000e+00 4117.0
9 TraesCS1B01G137400 chr1A 83.185 2248 306 39 877 3098 482248494 482250695 0.000000e+00 1991.0
10 TraesCS1B01G137400 chr1A 89.011 364 21 3 3284 3632 504945438 504945079 2.010000e-117 433.0
11 TraesCS1B01G137400 chr1A 84.412 417 38 13 4 416 124898441 124898048 5.710000e-103 385.0
12 TraesCS1B01G137400 chr1A 80.000 120 18 5 3155 3270 558518548 558518665 2.330000e-12 84.2
13 TraesCS1B01G137400 chr1A 95.000 40 1 1 3244 3283 402800533 402800571 1.090000e-05 62.1
14 TraesCS1B01G137400 chr5D 82.222 1620 254 21 891 2484 40929127 40927516 0.000000e+00 1365.0
15 TraesCS1B01G137400 chr5B 94.134 358 18 3 3280 3636 527042396 527042041 3.200000e-150 542.0
16 TraesCS1B01G137400 chr5A 92.593 378 13 3 3283 3647 455862256 455862631 2.490000e-146 529.0
17 TraesCS1B01G137400 chr5A 84.800 125 11 6 244 362 602196926 602196804 6.400000e-23 119.0
18 TraesCS1B01G137400 chr6A 90.576 382 19 10 3283 3647 32748505 32748124 1.180000e-134 490.0
19 TraesCS1B01G137400 chr3B 90.642 374 22 9 3284 3647 655318276 655318646 5.480000e-133 484.0
20 TraesCS1B01G137400 chr6B 90.104 384 14 5 3284 3647 365704007 365704386 9.160000e-131 477.0
21 TraesCS1B01G137400 chr4A 90.374 374 13 7 3280 3630 617352803 617353176 1.530000e-128 470.0
22 TraesCS1B01G137400 chr6D 89.710 379 11 7 3280 3630 461308671 461308293 3.320000e-125 459.0
23 TraesCS1B01G137400 chr6D 87.500 96 11 1 3153 3247 2100261 2100166 3.850000e-20 110.0
24 TraesCS1B01G137400 chr4D 88.571 385 22 4 3284 3647 36533201 36533584 7.180000e-122 448.0
25 TraesCS1B01G137400 chr4D 88.462 364 17 5 3284 3647 274462308 274462646 2.030000e-112 416.0
26 TraesCS1B01G137400 chr2D 85.484 124 17 1 3155 3277 458155283 458155160 1.060000e-25 128.0
27 TraesCS1B01G137400 chr2D 77.041 196 21 15 167 342 80666929 80666738 1.390000e-14 91.6
28 TraesCS1B01G137400 chr7D 82.946 129 18 3 3151 3276 446214193 446214066 2.980000e-21 113.0
29 TraesCS1B01G137400 chr7A 81.618 136 20 5 3155 3286 701493631 701493497 1.380000e-19 108.0
30 TraesCS1B01G137400 chr2B 77.157 197 21 16 167 342 132294127 132293934 3.880000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G137400 chr1B 175427009 175430655 3646 True 3067 5155 100.0000 1 3647 2 chr1B.!!$R2 3646
1 TraesCS1B01G137400 chr1B 511973139 511975338 2199 False 1962 1962 83.0000 858 3074 1 chr1B.!!$F1 2216
2 TraesCS1B01G137400 chr1D 114363605 114366030 2425 True 4204 4204 97.9400 857 3283 1 chr1D.!!$R1 2426
3 TraesCS1B01G137400 chr1D 381973808 381976024 2216 False 1953 1953 82.8070 858 3107 1 chr1D.!!$F1 2249
4 TraesCS1B01G137400 chr1A 124895460 124898441 2981 True 2251 4117 90.8465 4 3283 2 chr1A.!!$R2 3279
5 TraesCS1B01G137400 chr1A 482248494 482250695 2201 False 1991 1991 83.1850 877 3098 1 chr1A.!!$F2 2221
6 TraesCS1B01G137400 chr5D 40927516 40929127 1611 True 1365 1365 82.2220 891 2484 1 chr5D.!!$R1 1593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 456 0.032912 TACTAGACCGGTCATGGGCA 60.033 55.000 35.00 12.88 40.67 5.36 F
889 914 0.179029 CTCTCCTCGGTCTCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30 F
1506 1567 2.031163 GAAGCTGACGTGGGCACT 59.969 61.111 11.15 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1517 0.107703 TGCAACCGGATGATCACCTC 60.108 55.0 17.0 0.0 0.00 3.85 R
1690 1754 1.149101 ACATTGGGAGGACAACCAGT 58.851 50.0 0.0 0.0 38.16 4.00 R
3312 3388 0.110486 ACTGGGCCACAACTAACTGG 59.890 55.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.563949 GTGAACATTTATTTCAAATACACGTCG 58.436 33.333 0.00 0.00 34.78 5.12
64 65 3.781341 TCAAATACACGTCGAACTTGC 57.219 42.857 0.00 0.00 0.00 4.01
74 75 5.296283 ACACGTCGAACTTGCTCTAGTATAT 59.704 40.000 0.00 0.00 0.00 0.86
75 76 5.621634 CACGTCGAACTTGCTCTAGTATATG 59.378 44.000 0.00 0.00 0.00 1.78
344 347 9.892130 AATATCTAGCTACTAAAAACAACAGCT 57.108 29.630 0.00 0.00 41.87 4.24
346 349 6.755206 TCTAGCTACTAAAAACAACAGCTGA 58.245 36.000 23.35 0.00 39.56 4.26
377 381 9.567776 TTGTATGAAAATCTGACTTAGAAACCA 57.432 29.630 0.00 0.00 39.30 3.67
428 432 2.680707 TCCCACGGGCGTCATACA 60.681 61.111 0.00 0.00 34.68 2.29
429 433 2.510691 CCCACGGGCGTCATACAC 60.511 66.667 0.00 0.00 0.00 2.90
430 434 2.577059 CCACGGGCGTCATACACT 59.423 61.111 0.00 0.00 0.00 3.55
431 435 1.518572 CCACGGGCGTCATACACTC 60.519 63.158 0.00 0.00 0.00 3.51
432 436 1.214325 CACGGGCGTCATACACTCA 59.786 57.895 0.00 0.00 0.00 3.41
433 437 0.179111 CACGGGCGTCATACACTCAT 60.179 55.000 0.00 0.00 0.00 2.90
434 438 1.066454 CACGGGCGTCATACACTCATA 59.934 52.381 0.00 0.00 0.00 2.15
435 439 1.066605 ACGGGCGTCATACACTCATAC 59.933 52.381 0.00 0.00 0.00 2.39
436 440 1.337071 CGGGCGTCATACACTCATACT 59.663 52.381 0.00 0.00 0.00 2.12
437 441 2.551032 CGGGCGTCATACACTCATACTA 59.449 50.000 0.00 0.00 0.00 1.82
439 443 3.819337 GGGCGTCATACACTCATACTAGA 59.181 47.826 0.00 0.00 0.00 2.43
440 444 4.320348 GGGCGTCATACACTCATACTAGAC 60.320 50.000 0.00 0.00 0.00 2.59
442 446 4.610905 GCGTCATACACTCATACTAGACCG 60.611 50.000 0.00 0.00 0.00 4.79
443 447 4.083961 CGTCATACACTCATACTAGACCGG 60.084 50.000 0.00 0.00 0.00 5.28
444 448 4.820716 GTCATACACTCATACTAGACCGGT 59.179 45.833 6.92 6.92 0.00 5.28
446 450 3.361281 ACACTCATACTAGACCGGTCA 57.639 47.619 35.00 19.95 0.00 4.02
447 451 3.899726 ACACTCATACTAGACCGGTCAT 58.100 45.455 35.00 22.03 0.00 3.06
448 452 3.632604 ACACTCATACTAGACCGGTCATG 59.367 47.826 35.00 27.24 0.00 3.07
449 453 3.004839 CACTCATACTAGACCGGTCATGG 59.995 52.174 35.00 24.53 0.00 3.66
450 454 2.558795 CTCATACTAGACCGGTCATGGG 59.441 54.545 35.00 24.68 0.00 4.00
451 455 1.000955 CATACTAGACCGGTCATGGGC 59.999 57.143 35.00 9.14 37.26 5.36
452 456 0.032912 TACTAGACCGGTCATGGGCA 60.033 55.000 35.00 12.88 40.67 5.36
453 457 1.330655 ACTAGACCGGTCATGGGCAG 61.331 60.000 35.00 21.68 40.67 4.85
454 458 1.001120 TAGACCGGTCATGGGCAGA 59.999 57.895 35.00 7.75 40.67 4.26
455 459 1.043116 TAGACCGGTCATGGGCAGAG 61.043 60.000 35.00 0.00 40.67 3.35
467 471 2.033141 GCAGAGTGGGCTGAAGCA 59.967 61.111 4.43 0.00 44.36 3.91
474 478 3.070734 AGAGTGGGCTGAAGCATATACTG 59.929 47.826 4.43 0.00 44.36 2.74
475 479 2.774234 AGTGGGCTGAAGCATATACTGT 59.226 45.455 4.43 0.00 44.36 3.55
500 525 3.438017 TTGCAGCCCCACGCAAAAC 62.438 57.895 0.00 0.00 44.71 2.43
503 528 4.531426 AGCCCCACGCAAAACCCA 62.531 61.111 0.00 0.00 41.38 4.51
507 532 4.341502 CCACGCAAAACCCAGCCG 62.342 66.667 0.00 0.00 0.00 5.52
509 534 2.831284 ACGCAAAACCCAGCCGTT 60.831 55.556 0.00 0.00 0.00 4.44
528 553 1.931635 TGGCATCCCAAAAGGGTTAC 58.068 50.000 0.00 0.00 38.46 2.50
529 554 1.148027 TGGCATCCCAAAAGGGTTACA 59.852 47.619 0.00 0.00 38.46 2.41
889 914 0.179029 CTCTCCTCGGTCTCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
1456 1517 2.430942 CGGTTTGACCTCGCGTACG 61.431 63.158 11.84 11.84 35.66 3.67
1506 1567 2.031163 GAAGCTGACGTGGGCACT 59.969 61.111 11.15 0.00 0.00 4.40
1614 1675 2.091541 CGTCCCATGGTGCAAACTTAT 58.908 47.619 11.73 0.00 0.00 1.73
2094 2161 5.942961 TGGATGGGTGTTCTAAAGTTGTTA 58.057 37.500 0.00 0.00 0.00 2.41
2526 2599 6.841755 TCAAGGGAATGGAAGAAAAAGGTTTA 59.158 34.615 0.00 0.00 0.00 2.01
2535 2608 6.266786 TGGAAGAAAAAGGTTTAATCCCTGAC 59.733 38.462 0.00 0.00 33.52 3.51
2680 2753 0.756903 TATCTAGGGAAGCCGGCAAC 59.243 55.000 31.54 21.29 0.00 4.17
2724 2797 6.867662 TTCTTTCTGTTCTTCTGGTGATTC 57.132 37.500 0.00 0.00 0.00 2.52
2885 2961 0.518195 GCATGCCAAATTGTTGTGCC 59.482 50.000 6.36 0.00 31.38 5.01
3175 3251 6.011122 AGTAGGGATGCAAATTTCTGATCT 57.989 37.500 0.00 0.00 0.00 2.75
3283 3359 2.621070 TGAACTAAAGAGGGCCAGAGT 58.379 47.619 6.18 0.00 0.00 3.24
3284 3360 2.303022 TGAACTAAAGAGGGCCAGAGTG 59.697 50.000 6.18 0.00 0.00 3.51
3285 3361 2.031495 ACTAAAGAGGGCCAGAGTGT 57.969 50.000 6.18 0.00 0.00 3.55
3286 3362 2.339769 ACTAAAGAGGGCCAGAGTGTT 58.660 47.619 6.18 0.00 0.00 3.32
3287 3363 3.517612 ACTAAAGAGGGCCAGAGTGTTA 58.482 45.455 6.18 0.00 0.00 2.41
3288 3364 4.104831 ACTAAAGAGGGCCAGAGTGTTAT 58.895 43.478 6.18 0.00 0.00 1.89
3289 3365 3.356529 AAAGAGGGCCAGAGTGTTATG 57.643 47.619 6.18 0.00 0.00 1.90
3290 3366 2.254152 AGAGGGCCAGAGTGTTATGA 57.746 50.000 6.18 0.00 0.00 2.15
3291 3367 1.834263 AGAGGGCCAGAGTGTTATGAC 59.166 52.381 6.18 0.00 0.00 3.06
3292 3368 0.912486 AGGGCCAGAGTGTTATGACC 59.088 55.000 6.18 0.00 0.00 4.02
3293 3369 0.462047 GGGCCAGAGTGTTATGACCG 60.462 60.000 4.39 0.00 0.00 4.79
3294 3370 0.462047 GGCCAGAGTGTTATGACCGG 60.462 60.000 0.00 0.00 0.00 5.28
3295 3371 1.090052 GCCAGAGTGTTATGACCGGC 61.090 60.000 0.00 0.00 0.00 6.13
3296 3372 0.249120 CCAGAGTGTTATGACCGGCA 59.751 55.000 0.00 0.00 0.00 5.69
3297 3373 1.134401 CCAGAGTGTTATGACCGGCAT 60.134 52.381 14.43 14.43 41.08 4.40
3298 3374 2.102420 CCAGAGTGTTATGACCGGCATA 59.898 50.000 0.00 7.99 38.44 3.14
3299 3375 3.244215 CCAGAGTGTTATGACCGGCATAT 60.244 47.826 16.09 5.40 39.15 1.78
3300 3376 4.380531 CAGAGTGTTATGACCGGCATATT 58.619 43.478 16.09 6.14 39.15 1.28
3301 3377 5.510690 CCAGAGTGTTATGACCGGCATATTA 60.511 44.000 16.09 8.23 39.15 0.98
3302 3378 5.635280 CAGAGTGTTATGACCGGCATATTAG 59.365 44.000 16.09 3.56 39.15 1.73
3303 3379 4.894784 AGTGTTATGACCGGCATATTAGG 58.105 43.478 16.09 0.00 39.15 2.69
3304 3380 4.000988 GTGTTATGACCGGCATATTAGGG 58.999 47.826 16.09 0.00 39.15 3.53
3305 3381 3.008594 TGTTATGACCGGCATATTAGGGG 59.991 47.826 16.09 0.00 39.15 4.79
3306 3382 0.328258 ATGACCGGCATATTAGGGGC 59.672 55.000 0.00 0.00 34.82 5.80
3307 3383 0.766674 TGACCGGCATATTAGGGGCT 60.767 55.000 0.00 0.00 0.00 5.19
3308 3384 0.400594 GACCGGCATATTAGGGGCTT 59.599 55.000 0.00 0.00 0.00 4.35
3309 3385 1.626825 GACCGGCATATTAGGGGCTTA 59.373 52.381 0.00 0.00 0.00 3.09
3310 3386 1.628846 ACCGGCATATTAGGGGCTTAG 59.371 52.381 0.00 0.00 0.00 2.18
3311 3387 1.679032 CCGGCATATTAGGGGCTTAGC 60.679 57.143 0.00 0.00 0.00 3.09
3323 3399 2.491675 GGCTTAGCCCAGTTAGTTGT 57.508 50.000 13.12 0.00 44.06 3.32
3324 3400 2.084546 GGCTTAGCCCAGTTAGTTGTG 58.915 52.381 13.12 0.00 44.06 3.33
3325 3401 2.084546 GCTTAGCCCAGTTAGTTGTGG 58.915 52.381 0.00 0.00 0.00 4.17
3326 3402 2.084546 CTTAGCCCAGTTAGTTGTGGC 58.915 52.381 0.00 0.00 42.48 5.01
3327 3403 0.326927 TAGCCCAGTTAGTTGTGGCC 59.673 55.000 0.00 0.00 43.18 5.36
3328 3404 1.977009 GCCCAGTTAGTTGTGGCCC 60.977 63.158 0.00 0.00 36.07 5.80
3329 3405 1.458486 CCCAGTTAGTTGTGGCCCA 59.542 57.895 0.00 0.00 31.85 5.36
3330 3406 0.609131 CCCAGTTAGTTGTGGCCCAG 60.609 60.000 0.00 0.00 31.85 4.45
3331 3407 0.110486 CCAGTTAGTTGTGGCCCAGT 59.890 55.000 0.00 0.00 0.00 4.00
3332 3408 1.478654 CCAGTTAGTTGTGGCCCAGTT 60.479 52.381 0.00 0.00 0.00 3.16
3333 3409 2.306847 CAGTTAGTTGTGGCCCAGTTT 58.693 47.619 0.00 0.00 0.00 2.66
3334 3410 3.482436 CAGTTAGTTGTGGCCCAGTTTA 58.518 45.455 0.00 0.00 0.00 2.01
3335 3411 4.079253 CAGTTAGTTGTGGCCCAGTTTAT 58.921 43.478 0.00 0.00 0.00 1.40
3336 3412 4.156008 CAGTTAGTTGTGGCCCAGTTTATC 59.844 45.833 0.00 0.00 0.00 1.75
3337 3413 4.042934 AGTTAGTTGTGGCCCAGTTTATCT 59.957 41.667 0.00 0.00 0.00 1.98
3338 3414 3.525800 AGTTGTGGCCCAGTTTATCTT 57.474 42.857 0.00 0.00 0.00 2.40
3339 3415 4.650972 AGTTGTGGCCCAGTTTATCTTA 57.349 40.909 0.00 0.00 0.00 2.10
3340 3416 5.193099 AGTTGTGGCCCAGTTTATCTTAT 57.807 39.130 0.00 0.00 0.00 1.73
3341 3417 5.193679 AGTTGTGGCCCAGTTTATCTTATC 58.806 41.667 0.00 0.00 0.00 1.75
3342 3418 3.804036 TGTGGCCCAGTTTATCTTATCG 58.196 45.455 0.00 0.00 0.00 2.92
3343 3419 3.199071 TGTGGCCCAGTTTATCTTATCGT 59.801 43.478 0.00 0.00 0.00 3.73
3344 3420 4.196971 GTGGCCCAGTTTATCTTATCGTT 58.803 43.478 0.00 0.00 0.00 3.85
3345 3421 5.104859 TGTGGCCCAGTTTATCTTATCGTTA 60.105 40.000 0.00 0.00 0.00 3.18
3346 3422 5.995897 GTGGCCCAGTTTATCTTATCGTTAT 59.004 40.000 0.00 0.00 0.00 1.89
3347 3423 6.485648 GTGGCCCAGTTTATCTTATCGTTATT 59.514 38.462 0.00 0.00 0.00 1.40
3348 3424 7.658575 GTGGCCCAGTTTATCTTATCGTTATTA 59.341 37.037 0.00 0.00 0.00 0.98
3349 3425 7.876068 TGGCCCAGTTTATCTTATCGTTATTAG 59.124 37.037 0.00 0.00 0.00 1.73
3350 3426 7.333672 GGCCCAGTTTATCTTATCGTTATTAGG 59.666 40.741 0.00 0.00 0.00 2.69
3351 3427 7.333672 GCCCAGTTTATCTTATCGTTATTAGGG 59.666 40.741 0.00 0.00 0.00 3.53
3352 3428 7.822822 CCCAGTTTATCTTATCGTTATTAGGGG 59.177 40.741 0.00 0.00 0.00 4.79
3353 3429 7.333672 CCAGTTTATCTTATCGTTATTAGGGGC 59.666 40.741 0.00 0.00 0.00 5.80
3354 3430 8.095169 CAGTTTATCTTATCGTTATTAGGGGCT 58.905 37.037 0.00 0.00 0.00 5.19
3355 3431 8.657712 AGTTTATCTTATCGTTATTAGGGGCTT 58.342 33.333 0.00 0.00 0.00 4.35
3356 3432 9.933723 GTTTATCTTATCGTTATTAGGGGCTTA 57.066 33.333 0.00 0.00 0.00 3.09
3358 3434 6.034161 TCTTATCGTTATTAGGGGCTTAGC 57.966 41.667 0.00 0.00 0.00 3.09
3374 3450 6.319141 GGCTTAGCCCAATTATCTTGTTAG 57.681 41.667 13.12 0.00 44.06 2.34
3375 3451 5.241728 GGCTTAGCCCAATTATCTTGTTAGG 59.758 44.000 13.12 0.00 44.06 2.69
3376 3452 6.062095 GCTTAGCCCAATTATCTTGTTAGGA 58.938 40.000 0.00 0.00 0.00 2.94
3377 3453 6.205658 GCTTAGCCCAATTATCTTGTTAGGAG 59.794 42.308 0.00 0.00 0.00 3.69
3378 3454 5.053978 AGCCCAATTATCTTGTTAGGAGG 57.946 43.478 0.00 0.00 0.00 4.30
3379 3455 4.726825 AGCCCAATTATCTTGTTAGGAGGA 59.273 41.667 0.00 0.00 0.00 3.71
3380 3456 5.373854 AGCCCAATTATCTTGTTAGGAGGAT 59.626 40.000 0.00 0.00 0.00 3.24
3381 3457 6.071320 GCCCAATTATCTTGTTAGGAGGATT 58.929 40.000 0.00 0.00 0.00 3.01
3382 3458 7.073725 AGCCCAATTATCTTGTTAGGAGGATTA 59.926 37.037 0.00 0.00 0.00 1.75
3383 3459 7.890655 GCCCAATTATCTTGTTAGGAGGATTAT 59.109 37.037 0.00 0.00 0.00 1.28
3394 3470 9.976511 TTGTTAGGAGGATTATATAAACTCGTG 57.023 33.333 22.70 0.00 0.00 4.35
3395 3471 9.139734 TGTTAGGAGGATTATATAAACTCGTGT 57.860 33.333 22.70 13.98 0.00 4.49
3399 3475 8.804204 AGGAGGATTATATAAACTCGTGTAAGG 58.196 37.037 17.67 0.00 0.00 2.69
3400 3476 8.800332 GGAGGATTATATAAACTCGTGTAAGGA 58.200 37.037 17.43 0.00 0.00 3.36
3401 3477 9.623350 GAGGATTATATAAACTCGTGTAAGGAC 57.377 37.037 12.18 0.00 0.00 3.85
3402 3478 8.583296 AGGATTATATAAACTCGTGTAAGGACC 58.417 37.037 0.00 0.00 0.00 4.46
3403 3479 7.816513 GGATTATATAAACTCGTGTAAGGACCC 59.183 40.741 0.00 0.00 0.00 4.46
3404 3480 3.515330 ATAAACTCGTGTAAGGACCCG 57.485 47.619 0.00 0.00 0.00 5.28
3405 3481 1.043022 AAACTCGTGTAAGGACCCGT 58.957 50.000 0.00 0.00 0.00 5.28
3406 3482 1.043022 AACTCGTGTAAGGACCCGTT 58.957 50.000 0.00 0.00 0.00 4.44
3407 3483 1.043022 ACTCGTGTAAGGACCCGTTT 58.957 50.000 0.00 0.00 0.00 3.60
3408 3484 1.413812 ACTCGTGTAAGGACCCGTTTT 59.586 47.619 0.00 0.00 0.00 2.43
3409 3485 1.796459 CTCGTGTAAGGACCCGTTTTG 59.204 52.381 0.00 0.00 0.00 2.44
3410 3486 0.869730 CGTGTAAGGACCCGTTTTGG 59.130 55.000 0.00 0.00 37.55 3.28
3423 3499 4.513198 CCGTTTTGGGATTAAGCAAGAA 57.487 40.909 0.00 0.00 0.00 2.52
3424 3500 4.485163 CCGTTTTGGGATTAAGCAAGAAG 58.515 43.478 0.00 0.00 0.00 2.85
3425 3501 3.920412 CGTTTTGGGATTAAGCAAGAAGC 59.080 43.478 0.00 0.00 46.19 3.86
3442 3518 3.199764 GCAATCATATTTGCCCGGC 57.800 52.632 1.04 1.04 44.94 6.13
3443 3519 0.675633 GCAATCATATTTGCCCGGCT 59.324 50.000 11.61 0.00 44.94 5.52
3444 3520 1.069049 GCAATCATATTTGCCCGGCTT 59.931 47.619 11.61 0.00 44.94 4.35
3445 3521 2.863704 GCAATCATATTTGCCCGGCTTC 60.864 50.000 11.61 0.00 44.94 3.86
3446 3522 1.620822 ATCATATTTGCCCGGCTTCC 58.379 50.000 11.61 0.00 0.00 3.46
3447 3523 0.550914 TCATATTTGCCCGGCTTCCT 59.449 50.000 11.61 0.00 0.00 3.36
3448 3524 1.064017 TCATATTTGCCCGGCTTCCTT 60.064 47.619 11.61 0.00 0.00 3.36
3449 3525 2.173782 TCATATTTGCCCGGCTTCCTTA 59.826 45.455 11.61 0.00 0.00 2.69
3450 3526 2.341846 TATTTGCCCGGCTTCCTTAG 57.658 50.000 11.61 0.00 0.00 2.18
3451 3527 0.395724 ATTTGCCCGGCTTCCTTAGG 60.396 55.000 11.61 0.00 0.00 2.69
3452 3528 2.493273 TTTGCCCGGCTTCCTTAGGG 62.493 60.000 11.61 0.00 46.44 3.53
3453 3529 3.087906 GCCCGGCTTCCTTAGGGA 61.088 66.667 0.71 0.00 46.64 4.20
3454 3530 3.108288 GCCCGGCTTCCTTAGGGAG 62.108 68.421 1.20 1.20 46.64 4.30
3455 3531 2.506472 CCGGCTTCCTTAGGGAGC 59.494 66.667 22.98 22.98 43.29 4.70
3456 3532 2.506472 CGGCTTCCTTAGGGAGCC 59.494 66.667 35.24 35.24 44.75 4.70
3457 3533 2.506472 GGCTTCCTTAGGGAGCCG 59.494 66.667 32.66 0.00 43.29 5.52
3458 3534 2.506472 GCTTCCTTAGGGAGCCGG 59.494 66.667 20.68 0.00 43.29 6.13
3459 3535 3.108288 GCTTCCTTAGGGAGCCGGG 62.108 68.421 20.68 0.00 43.29 5.73
3460 3536 1.382695 CTTCCTTAGGGAGCCGGGA 60.383 63.158 2.18 0.00 43.29 5.14
3461 3537 1.382695 TTCCTTAGGGAGCCGGGAG 60.383 63.158 2.18 0.00 43.29 4.30
3462 3538 1.882189 TTCCTTAGGGAGCCGGGAGA 61.882 60.000 2.18 0.00 43.29 3.71
3463 3539 1.834822 CCTTAGGGAGCCGGGAGAG 60.835 68.421 2.18 0.00 33.58 3.20
3464 3540 2.444140 TTAGGGAGCCGGGAGAGC 60.444 66.667 2.18 0.00 0.00 4.09
3465 3541 2.937959 CTTAGGGAGCCGGGAGAGCT 62.938 65.000 2.18 0.00 45.23 4.09
3466 3542 1.652187 TTAGGGAGCCGGGAGAGCTA 61.652 60.000 2.18 0.00 41.75 3.32
3467 3543 1.652187 TAGGGAGCCGGGAGAGCTAA 61.652 60.000 2.18 0.00 41.75 3.09
3468 3544 2.798364 GGGAGCCGGGAGAGCTAAC 61.798 68.421 2.18 0.00 41.75 2.34
3469 3545 2.798364 GGAGCCGGGAGAGCTAACC 61.798 68.421 2.18 0.00 41.75 2.85
3470 3546 2.764547 AGCCGGGAGAGCTAACCC 60.765 66.667 15.42 15.42 39.29 4.11
3471 3547 2.764547 GCCGGGAGAGCTAACCCT 60.765 66.667 20.77 0.00 43.57 4.34
3472 3548 1.457079 GCCGGGAGAGCTAACCCTA 60.457 63.158 20.77 0.00 43.57 3.53
3473 3549 1.465200 GCCGGGAGAGCTAACCCTAG 61.465 65.000 20.77 14.62 43.57 3.02
3491 3567 4.567385 CCGCCGCTGCTCTCTCTC 62.567 72.222 0.00 0.00 34.43 3.20
3492 3568 3.517140 CGCCGCTGCTCTCTCTCT 61.517 66.667 0.00 0.00 34.43 3.10
3493 3569 2.412937 GCCGCTGCTCTCTCTCTC 59.587 66.667 0.00 0.00 33.53 3.20
3494 3570 2.120909 GCCGCTGCTCTCTCTCTCT 61.121 63.158 0.00 0.00 33.53 3.10
3495 3571 2.024918 CCGCTGCTCTCTCTCTCTC 58.975 63.158 0.00 0.00 0.00 3.20
3496 3572 0.464373 CCGCTGCTCTCTCTCTCTCT 60.464 60.000 0.00 0.00 0.00 3.10
3497 3573 0.940126 CGCTGCTCTCTCTCTCTCTC 59.060 60.000 0.00 0.00 0.00 3.20
3498 3574 1.473965 CGCTGCTCTCTCTCTCTCTCT 60.474 57.143 0.00 0.00 0.00 3.10
3499 3575 2.216898 GCTGCTCTCTCTCTCTCTCTC 58.783 57.143 0.00 0.00 0.00 3.20
3500 3576 2.158842 GCTGCTCTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
3501 3577 3.726607 CTGCTCTCTCTCTCTCTCTCTC 58.273 54.545 0.00 0.00 0.00 3.20
3502 3578 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
3503 3579 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
3504 3580 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
3505 3581 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
3506 3582 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3507 3583 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3508 3584 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3509 3585 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3510 3586 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3511 3587 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3512 3588 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3513 3589 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3514 3590 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3515 3591 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3516 3592 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3517 3593 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3518 3594 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3519 3595 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3520 3596 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3521 3597 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3522 3598 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3523 3599 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3524 3600 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3525 3601 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3526 3602 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3527 3603 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3528 3604 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
3529 3605 3.632333 TCTCTCTCTCTCTCTCTCTCGT 58.368 50.000 0.00 0.00 0.00 4.18
3530 3606 3.381590 TCTCTCTCTCTCTCTCTCTCGTG 59.618 52.174 0.00 0.00 0.00 4.35
3531 3607 2.159099 TCTCTCTCTCTCTCTCTCGTGC 60.159 54.545 0.00 0.00 0.00 5.34
3532 3608 0.930310 CTCTCTCTCTCTCTCGTGCG 59.070 60.000 0.00 0.00 0.00 5.34
3533 3609 1.087202 TCTCTCTCTCTCTCGTGCGC 61.087 60.000 0.00 0.00 0.00 6.09
3534 3610 1.365368 CTCTCTCTCTCTCGTGCGCA 61.365 60.000 5.66 5.66 0.00 6.09
3535 3611 1.226267 CTCTCTCTCTCGTGCGCAC 60.226 63.158 30.42 30.42 0.00 5.34
3577 3653 4.530857 CGACCACGCCATCCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
3578 3654 3.083997 GACCACGCCATCCCTCCT 61.084 66.667 0.00 0.00 0.00 3.69
3579 3655 2.610859 ACCACGCCATCCCTCCTT 60.611 61.111 0.00 0.00 0.00 3.36
3580 3656 2.190578 CCACGCCATCCCTCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
3581 3657 2.190578 CACGCCATCCCTCCTTCC 59.809 66.667 0.00 0.00 0.00 3.46
3582 3658 2.285368 ACGCCATCCCTCCTTCCA 60.285 61.111 0.00 0.00 0.00 3.53
3583 3659 2.190578 CGCCATCCCTCCTTCCAC 59.809 66.667 0.00 0.00 0.00 4.02
3584 3660 2.597903 GCCATCCCTCCTTCCACC 59.402 66.667 0.00 0.00 0.00 4.61
3585 3661 3.061905 GCCATCCCTCCTTCCACCC 62.062 68.421 0.00 0.00 0.00 4.61
3586 3662 2.386935 CCATCCCTCCTTCCACCCC 61.387 68.421 0.00 0.00 0.00 4.95
3587 3663 1.308216 CATCCCTCCTTCCACCCCT 60.308 63.158 0.00 0.00 0.00 4.79
3588 3664 0.030092 CATCCCTCCTTCCACCCCTA 60.030 60.000 0.00 0.00 0.00 3.53
3589 3665 0.029989 ATCCCTCCTTCCACCCCTAC 60.030 60.000 0.00 0.00 0.00 3.18
3590 3666 1.082206 CCCTCCTTCCACCCCTACA 59.918 63.158 0.00 0.00 0.00 2.74
3591 3667 0.549169 CCCTCCTTCCACCCCTACAA 60.549 60.000 0.00 0.00 0.00 2.41
3592 3668 0.618981 CCTCCTTCCACCCCTACAAC 59.381 60.000 0.00 0.00 0.00 3.32
3593 3669 0.618981 CTCCTTCCACCCCTACAACC 59.381 60.000 0.00 0.00 0.00 3.77
3594 3670 0.195096 TCCTTCCACCCCTACAACCT 59.805 55.000 0.00 0.00 0.00 3.50
3595 3671 0.328258 CCTTCCACCCCTACAACCTG 59.672 60.000 0.00 0.00 0.00 4.00
3596 3672 1.358152 CTTCCACCCCTACAACCTGA 58.642 55.000 0.00 0.00 0.00 3.86
3597 3673 1.279271 CTTCCACCCCTACAACCTGAG 59.721 57.143 0.00 0.00 0.00 3.35
3598 3674 0.490017 TCCACCCCTACAACCTGAGA 59.510 55.000 0.00 0.00 0.00 3.27
3599 3675 0.613777 CCACCCCTACAACCTGAGAC 59.386 60.000 0.00 0.00 0.00 3.36
3600 3676 0.613777 CACCCCTACAACCTGAGACC 59.386 60.000 0.00 0.00 0.00 3.85
3601 3677 0.192566 ACCCCTACAACCTGAGACCA 59.807 55.000 0.00 0.00 0.00 4.02
3602 3678 0.613777 CCCCTACAACCTGAGACCAC 59.386 60.000 0.00 0.00 0.00 4.16
3603 3679 0.246635 CCCTACAACCTGAGACCACG 59.753 60.000 0.00 0.00 0.00 4.94
3604 3680 0.389948 CCTACAACCTGAGACCACGC 60.390 60.000 0.00 0.00 0.00 5.34
3605 3681 0.389948 CTACAACCTGAGACCACGCC 60.390 60.000 0.00 0.00 0.00 5.68
3606 3682 1.823169 TACAACCTGAGACCACGCCC 61.823 60.000 0.00 0.00 0.00 6.13
3607 3683 2.526873 AACCTGAGACCACGCCCT 60.527 61.111 0.00 0.00 0.00 5.19
3608 3684 2.883828 AACCTGAGACCACGCCCTG 61.884 63.158 0.00 0.00 0.00 4.45
3622 3698 4.394102 CCTGGTAGGGATCCGGTT 57.606 61.111 5.45 0.00 0.00 4.44
3623 3699 2.134092 CCTGGTAGGGATCCGGTTC 58.866 63.158 5.45 1.67 0.00 3.62
3624 3700 1.408453 CCTGGTAGGGATCCGGTTCC 61.408 65.000 21.54 21.54 34.83 3.62
3625 3701 0.398664 CTGGTAGGGATCCGGTTCCT 60.399 60.000 26.93 20.65 35.97 3.36
3626 3702 0.935942 TGGTAGGGATCCGGTTCCTA 59.064 55.000 26.93 19.75 35.97 2.94
3628 3704 1.336131 GTAGGGATCCGGTTCCTACC 58.664 60.000 26.93 13.46 44.29 3.18
3629 3705 0.935942 TAGGGATCCGGTTCCTACCA 59.064 55.000 26.93 10.23 45.31 3.25
3630 3706 0.043637 AGGGATCCGGTTCCTACCAA 59.956 55.000 26.93 0.00 45.31 3.67
3631 3707 1.137697 GGGATCCGGTTCCTACCAAT 58.862 55.000 26.93 0.00 45.31 3.16
3632 3708 1.493446 GGGATCCGGTTCCTACCAATT 59.507 52.381 26.93 0.00 45.31 2.32
3633 3709 2.092049 GGGATCCGGTTCCTACCAATTT 60.092 50.000 26.93 0.00 45.31 1.82
3634 3710 2.949644 GGATCCGGTTCCTACCAATTTG 59.050 50.000 22.23 0.00 45.31 2.32
3635 3711 2.500392 TCCGGTTCCTACCAATTTGG 57.500 50.000 14.02 14.02 45.31 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.986936 TCATATACTAGAGCAAGTTCGACG 58.013 41.667 0.00 0.00 0.00 5.12
57 58 9.703892 ATGTTCATCATATACTAGAGCAAGTTC 57.296 33.333 0.00 0.00 34.67 3.01
137 139 8.811017 TCCATGTGTATTTAAAATGTTCACCAT 58.189 29.630 0.00 0.00 34.36 3.55
138 140 8.183104 TCCATGTGTATTTAAAATGTTCACCA 57.817 30.769 0.00 0.00 0.00 4.17
139 141 8.921670 GTTCCATGTGTATTTAAAATGTTCACC 58.078 33.333 0.00 0.00 0.00 4.02
140 142 9.469807 TGTTCCATGTGTATTTAAAATGTTCAC 57.530 29.630 0.00 0.00 0.00 3.18
322 325 6.755206 TCAGCTGTTGTTTTTAGTAGCTAGA 58.245 36.000 14.67 0.00 39.29 2.43
377 381 9.626045 CTCTGCCGTTTTCTATTATTTTTCTTT 57.374 29.630 0.00 0.00 0.00 2.52
386 390 3.869065 CCCACTCTGCCGTTTTCTATTA 58.131 45.455 0.00 0.00 0.00 0.98
389 393 0.321298 GCCCACTCTGCCGTTTTCTA 60.321 55.000 0.00 0.00 0.00 2.10
390 394 1.600916 GCCCACTCTGCCGTTTTCT 60.601 57.895 0.00 0.00 0.00 2.52
392 396 2.597510 GGCCCACTCTGCCGTTTT 60.598 61.111 0.00 0.00 39.48 2.43
416 420 1.337071 AGTATGAGTGTATGACGCCCG 59.663 52.381 0.00 0.00 0.00 6.13
417 421 3.819337 TCTAGTATGAGTGTATGACGCCC 59.181 47.826 0.00 0.00 0.00 6.13
418 422 4.320348 GGTCTAGTATGAGTGTATGACGCC 60.320 50.000 0.00 0.00 0.00 5.68
422 426 5.045012 ACCGGTCTAGTATGAGTGTATGA 57.955 43.478 0.00 0.00 0.00 2.15
423 427 4.820173 TGACCGGTCTAGTATGAGTGTATG 59.180 45.833 33.39 0.00 0.00 2.39
424 428 5.045012 TGACCGGTCTAGTATGAGTGTAT 57.955 43.478 33.39 0.00 0.00 2.29
425 429 4.492494 TGACCGGTCTAGTATGAGTGTA 57.508 45.455 33.39 7.24 0.00 2.90
428 432 3.223435 CCATGACCGGTCTAGTATGAGT 58.777 50.000 33.39 7.10 0.00 3.41
429 433 2.558795 CCCATGACCGGTCTAGTATGAG 59.441 54.545 33.39 16.64 0.00 2.90
430 434 2.594131 CCCATGACCGGTCTAGTATGA 58.406 52.381 33.39 13.52 0.00 2.15
431 435 1.000955 GCCCATGACCGGTCTAGTATG 59.999 57.143 33.39 26.21 0.00 2.39
432 436 1.339097 GCCCATGACCGGTCTAGTAT 58.661 55.000 33.39 17.13 0.00 2.12
433 437 0.032912 TGCCCATGACCGGTCTAGTA 60.033 55.000 33.39 15.47 0.00 1.82
434 438 1.305802 TGCCCATGACCGGTCTAGT 60.306 57.895 33.39 17.66 0.00 2.57
435 439 1.043116 TCTGCCCATGACCGGTCTAG 61.043 60.000 33.39 24.40 0.00 2.43
436 440 1.001120 TCTGCCCATGACCGGTCTA 59.999 57.895 33.39 20.73 0.00 2.59
437 441 2.284625 TCTGCCCATGACCGGTCT 60.285 61.111 33.39 17.38 0.00 3.85
439 443 2.607750 ACTCTGCCCATGACCGGT 60.608 61.111 6.92 6.92 0.00 5.28
440 444 2.124983 CACTCTGCCCATGACCGG 60.125 66.667 0.00 0.00 0.00 5.28
442 446 2.273449 CCCACTCTGCCCATGACC 59.727 66.667 0.00 0.00 0.00 4.02
443 447 2.439156 GCCCACTCTGCCCATGAC 60.439 66.667 0.00 0.00 0.00 3.06
444 448 2.611800 AGCCCACTCTGCCCATGA 60.612 61.111 0.00 0.00 0.00 3.07
446 450 2.207501 CTTCAGCCCACTCTGCCCAT 62.208 60.000 0.00 0.00 34.19 4.00
447 451 2.853542 TTCAGCCCACTCTGCCCA 60.854 61.111 0.00 0.00 34.19 5.36
448 452 2.045536 CTTCAGCCCACTCTGCCC 60.046 66.667 0.00 0.00 34.19 5.36
449 453 2.749441 GCTTCAGCCCACTCTGCC 60.749 66.667 0.00 0.00 34.19 4.85
450 454 0.107508 TATGCTTCAGCCCACTCTGC 60.108 55.000 0.00 0.00 41.18 4.26
451 455 2.634815 ATATGCTTCAGCCCACTCTG 57.365 50.000 0.00 0.00 41.18 3.35
452 456 3.070734 CAGTATATGCTTCAGCCCACTCT 59.929 47.826 0.00 0.00 41.18 3.24
453 457 3.181461 ACAGTATATGCTTCAGCCCACTC 60.181 47.826 0.00 0.00 41.18 3.51
454 458 2.774234 ACAGTATATGCTTCAGCCCACT 59.226 45.455 0.00 0.00 41.18 4.00
455 459 2.874701 CACAGTATATGCTTCAGCCCAC 59.125 50.000 0.00 0.00 41.18 4.61
467 471 3.016736 GCTGCAACCAACCACAGTATAT 58.983 45.455 0.00 0.00 32.65 0.86
474 478 3.615709 GGGGCTGCAACCAACCAC 61.616 66.667 8.71 0.00 0.00 4.16
475 479 4.149019 TGGGGCTGCAACCAACCA 62.149 61.111 8.71 4.18 32.89 3.67
1456 1517 0.107703 TGCAACCGGATGATCACCTC 60.108 55.000 17.00 0.00 0.00 3.85
1506 1567 0.319211 CCGTGACAAGCGTGGAGTAA 60.319 55.000 4.26 0.00 0.00 2.24
1614 1675 0.910566 ACCCCTGTACAATGGGCGTA 60.911 55.000 23.83 0.00 43.54 4.42
1690 1754 1.149101 ACATTGGGAGGACAACCAGT 58.851 50.000 0.00 0.00 38.16 4.00
1896 1960 4.918201 GGATCCAGCCCTTCGCCG 62.918 72.222 6.95 0.00 38.78 6.46
2094 2161 4.285517 ACACCTCTCTTGATCATGTCTGTT 59.714 41.667 8.33 0.00 0.00 3.16
2526 2599 8.506083 AGGTCAAATATAGAATTGTCAGGGATT 58.494 33.333 0.00 0.00 0.00 3.01
2669 2742 1.669795 CCTTCAATTGTTGCCGGCTTC 60.670 52.381 29.70 20.21 0.00 3.86
2680 2753 5.869888 AGAAAGAGTACGCTACCTTCAATTG 59.130 40.000 10.79 0.00 0.00 2.32
2724 2797 9.533253 GGAACAACATTAATCCATCTAAATTGG 57.467 33.333 0.00 0.00 35.45 3.16
2885 2961 6.603237 TTGAGAGCCATTGATAATTACACG 57.397 37.500 0.00 0.00 0.00 4.49
3132 3208 4.218312 ACTTGAGAACCAGGCAGAAAAAT 58.782 39.130 0.00 0.00 0.00 1.82
3283 3359 3.008594 CCCCTAATATGCCGGTCATAACA 59.991 47.826 18.34 10.64 40.73 2.41
3284 3360 3.606687 CCCCTAATATGCCGGTCATAAC 58.393 50.000 18.34 0.00 40.73 1.89
3285 3361 2.026636 GCCCCTAATATGCCGGTCATAA 60.027 50.000 18.34 6.45 40.73 1.90
3286 3362 1.557832 GCCCCTAATATGCCGGTCATA 59.442 52.381 17.22 17.22 41.52 2.15
3287 3363 0.328258 GCCCCTAATATGCCGGTCAT 59.672 55.000 14.43 14.43 39.17 3.06
3288 3364 0.766674 AGCCCCTAATATGCCGGTCA 60.767 55.000 1.90 1.38 0.00 4.02
3289 3365 0.400594 AAGCCCCTAATATGCCGGTC 59.599 55.000 1.90 0.00 0.00 4.79
3290 3366 1.628846 CTAAGCCCCTAATATGCCGGT 59.371 52.381 1.90 0.00 0.00 5.28
3291 3367 1.679032 GCTAAGCCCCTAATATGCCGG 60.679 57.143 0.00 0.00 0.00 6.13
3292 3368 1.679032 GGCTAAGCCCCTAATATGCCG 60.679 57.143 0.00 0.00 44.06 5.69
3293 3369 2.130272 GGCTAAGCCCCTAATATGCC 57.870 55.000 0.00 0.00 44.06 4.40
3305 3381 2.084546 CCACAACTAACTGGGCTAAGC 58.915 52.381 0.00 0.00 0.00 3.09
3306 3382 2.084546 GCCACAACTAACTGGGCTAAG 58.915 52.381 0.00 0.00 41.39 2.18
3307 3383 2.194201 GCCACAACTAACTGGGCTAA 57.806 50.000 0.00 0.00 41.39 3.09
3308 3384 3.948735 GCCACAACTAACTGGGCTA 57.051 52.632 0.00 0.00 41.39 3.93
3309 3385 4.821935 GCCACAACTAACTGGGCT 57.178 55.556 0.00 0.00 41.39 5.19
3310 3386 3.681473 GGCCACAACTAACTGGGC 58.319 61.111 0.00 0.00 45.01 5.36
3311 3387 0.609131 CTGGGCCACAACTAACTGGG 60.609 60.000 0.00 0.00 0.00 4.45
3312 3388 0.110486 ACTGGGCCACAACTAACTGG 59.890 55.000 0.00 0.00 0.00 4.00
3313 3389 1.981256 AACTGGGCCACAACTAACTG 58.019 50.000 0.00 0.00 0.00 3.16
3314 3390 2.748209 AAACTGGGCCACAACTAACT 57.252 45.000 0.00 0.00 0.00 2.24
3315 3391 4.332828 AGATAAACTGGGCCACAACTAAC 58.667 43.478 0.00 0.00 0.00 2.34
3316 3392 4.650972 AGATAAACTGGGCCACAACTAA 57.349 40.909 0.00 0.00 0.00 2.24
3317 3393 4.650972 AAGATAAACTGGGCCACAACTA 57.349 40.909 0.00 0.00 0.00 2.24
3318 3394 3.525800 AAGATAAACTGGGCCACAACT 57.474 42.857 0.00 0.00 0.00 3.16
3319 3395 4.035208 CGATAAGATAAACTGGGCCACAAC 59.965 45.833 0.00 0.00 0.00 3.32
3320 3396 4.196193 CGATAAGATAAACTGGGCCACAA 58.804 43.478 0.00 0.00 0.00 3.33
3321 3397 3.199071 ACGATAAGATAAACTGGGCCACA 59.801 43.478 0.00 0.00 0.00 4.17
3322 3398 3.805207 ACGATAAGATAAACTGGGCCAC 58.195 45.455 0.00 0.00 0.00 5.01
3323 3399 4.497291 AACGATAAGATAAACTGGGCCA 57.503 40.909 5.85 5.85 0.00 5.36
3324 3400 7.333672 CCTAATAACGATAAGATAAACTGGGCC 59.666 40.741 0.00 0.00 0.00 5.80
3325 3401 7.333672 CCCTAATAACGATAAGATAAACTGGGC 59.666 40.741 0.00 0.00 0.00 5.36
3326 3402 7.822822 CCCCTAATAACGATAAGATAAACTGGG 59.177 40.741 0.00 0.00 0.00 4.45
3327 3403 7.333672 GCCCCTAATAACGATAAGATAAACTGG 59.666 40.741 0.00 0.00 0.00 4.00
3328 3404 8.095169 AGCCCCTAATAACGATAAGATAAACTG 58.905 37.037 0.00 0.00 0.00 3.16
3329 3405 8.203681 AGCCCCTAATAACGATAAGATAAACT 57.796 34.615 0.00 0.00 0.00 2.66
3330 3406 8.843885 AAGCCCCTAATAACGATAAGATAAAC 57.156 34.615 0.00 0.00 0.00 2.01
3332 3408 8.255905 GCTAAGCCCCTAATAACGATAAGATAA 58.744 37.037 0.00 0.00 0.00 1.75
3333 3409 7.147776 GGCTAAGCCCCTAATAACGATAAGATA 60.148 40.741 0.00 0.00 44.06 1.98
3334 3410 6.351966 GGCTAAGCCCCTAATAACGATAAGAT 60.352 42.308 0.00 0.00 44.06 2.40
3335 3411 5.046807 GGCTAAGCCCCTAATAACGATAAGA 60.047 44.000 0.00 0.00 44.06 2.10
3336 3412 5.176592 GGCTAAGCCCCTAATAACGATAAG 58.823 45.833 0.00 0.00 44.06 1.73
3337 3413 5.156608 GGCTAAGCCCCTAATAACGATAA 57.843 43.478 0.00 0.00 44.06 1.75
3338 3414 4.813750 GGCTAAGCCCCTAATAACGATA 57.186 45.455 0.00 0.00 44.06 2.92
3339 3415 3.697619 GGCTAAGCCCCTAATAACGAT 57.302 47.619 0.00 0.00 44.06 3.73
3352 3428 6.062095 TCCTAACAAGATAATTGGGCTAAGC 58.938 40.000 0.00 0.00 0.00 3.09
3353 3429 6.712547 CCTCCTAACAAGATAATTGGGCTAAG 59.287 42.308 0.00 0.00 0.00 2.18
3354 3430 6.388689 TCCTCCTAACAAGATAATTGGGCTAA 59.611 38.462 0.00 0.00 0.00 3.09
3355 3431 5.908831 TCCTCCTAACAAGATAATTGGGCTA 59.091 40.000 0.00 0.00 0.00 3.93
3356 3432 4.726825 TCCTCCTAACAAGATAATTGGGCT 59.273 41.667 0.00 0.00 0.00 5.19
3357 3433 5.048846 TCCTCCTAACAAGATAATTGGGC 57.951 43.478 0.00 0.00 0.00 5.36
3368 3444 9.976511 CACGAGTTTATATAATCCTCCTAACAA 57.023 33.333 13.20 0.00 0.00 2.83
3369 3445 9.139734 ACACGAGTTTATATAATCCTCCTAACA 57.860 33.333 13.20 0.00 0.00 2.41
3373 3449 8.804204 CCTTACACGAGTTTATATAATCCTCCT 58.196 37.037 13.20 4.08 0.00 3.69
3374 3450 8.800332 TCCTTACACGAGTTTATATAATCCTCC 58.200 37.037 13.20 0.56 0.00 4.30
3375 3451 9.623350 GTCCTTACACGAGTTTATATAATCCTC 57.377 37.037 10.53 10.53 0.00 3.71
3376 3452 8.583296 GGTCCTTACACGAGTTTATATAATCCT 58.417 37.037 0.00 0.00 0.00 3.24
3377 3453 7.816513 GGGTCCTTACACGAGTTTATATAATCC 59.183 40.741 0.00 0.00 0.00 3.01
3378 3454 8.754230 GGGTCCTTACACGAGTTTATATAATC 57.246 38.462 0.00 0.00 0.00 1.75
3402 3478 4.485163 CTTCTTGCTTAATCCCAAAACGG 58.515 43.478 0.00 0.00 0.00 4.44
3403 3479 3.920412 GCTTCTTGCTTAATCCCAAAACG 59.080 43.478 0.00 0.00 38.95 3.60
3404 3480 4.881920 TGCTTCTTGCTTAATCCCAAAAC 58.118 39.130 0.00 0.00 43.37 2.43
3405 3481 5.543507 TTGCTTCTTGCTTAATCCCAAAA 57.456 34.783 0.00 0.00 43.37 2.44
3406 3482 5.245751 TGATTGCTTCTTGCTTAATCCCAAA 59.754 36.000 0.00 0.00 43.37 3.28
3407 3483 4.771577 TGATTGCTTCTTGCTTAATCCCAA 59.228 37.500 0.00 0.00 43.37 4.12
3408 3484 4.343231 TGATTGCTTCTTGCTTAATCCCA 58.657 39.130 0.00 0.00 43.37 4.37
3409 3485 4.989279 TGATTGCTTCTTGCTTAATCCC 57.011 40.909 0.00 0.00 43.37 3.85
3410 3486 8.975439 CAAATATGATTGCTTCTTGCTTAATCC 58.025 33.333 0.00 0.00 43.37 3.01
3425 3501 2.288395 GGAAGCCGGGCAAATATGATTG 60.288 50.000 23.09 0.00 0.00 2.67
3426 3502 1.963515 GGAAGCCGGGCAAATATGATT 59.036 47.619 23.09 3.40 0.00 2.57
3427 3503 1.145738 AGGAAGCCGGGCAAATATGAT 59.854 47.619 23.09 0.00 0.00 2.45
3428 3504 0.550914 AGGAAGCCGGGCAAATATGA 59.449 50.000 23.09 0.00 0.00 2.15
3429 3505 1.402787 AAGGAAGCCGGGCAAATATG 58.597 50.000 23.09 0.00 0.00 1.78
3430 3506 2.489073 CCTAAGGAAGCCGGGCAAATAT 60.489 50.000 23.09 6.83 0.00 1.28
3431 3507 1.133915 CCTAAGGAAGCCGGGCAAATA 60.134 52.381 23.09 5.88 0.00 1.40
3432 3508 0.395724 CCTAAGGAAGCCGGGCAAAT 60.396 55.000 23.09 6.75 0.00 2.32
3433 3509 1.001393 CCTAAGGAAGCCGGGCAAA 60.001 57.895 23.09 0.00 0.00 3.68
3434 3510 2.674754 CCTAAGGAAGCCGGGCAA 59.325 61.111 23.09 0.00 0.00 4.52
3435 3511 3.407967 CCCTAAGGAAGCCGGGCA 61.408 66.667 23.09 0.00 33.47 5.36
3436 3512 3.087906 TCCCTAAGGAAGCCGGGC 61.088 66.667 12.11 12.11 40.08 6.13
3437 3513 3.108288 GCTCCCTAAGGAAGCCGGG 62.108 68.421 2.18 0.00 43.40 5.73
3438 3514 2.506472 GCTCCCTAAGGAAGCCGG 59.494 66.667 0.00 0.00 43.40 6.13
3439 3515 2.506472 GGCTCCCTAAGGAAGCCG 59.494 66.667 8.09 0.00 43.40 5.52
3440 3516 2.506472 CGGCTCCCTAAGGAAGCC 59.494 66.667 12.57 12.57 45.65 4.35
3441 3517 2.506472 CCGGCTCCCTAAGGAAGC 59.494 66.667 0.00 0.00 43.40 3.86
3442 3518 1.382695 TCCCGGCTCCCTAAGGAAG 60.383 63.158 0.00 0.00 43.40 3.46
3443 3519 1.382695 CTCCCGGCTCCCTAAGGAA 60.383 63.158 0.00 0.00 43.40 3.36
3444 3520 2.282446 CTCCCGGCTCCCTAAGGA 59.718 66.667 0.00 0.00 41.08 3.36
3445 3521 1.834822 CTCTCCCGGCTCCCTAAGG 60.835 68.421 0.00 0.00 0.00 2.69
3446 3522 2.503382 GCTCTCCCGGCTCCCTAAG 61.503 68.421 0.00 0.00 0.00 2.18
3447 3523 1.652187 TAGCTCTCCCGGCTCCCTAA 61.652 60.000 0.00 0.00 40.74 2.69
3448 3524 1.652187 TTAGCTCTCCCGGCTCCCTA 61.652 60.000 0.00 0.00 40.74 3.53
3449 3525 3.010226 TTAGCTCTCCCGGCTCCCT 62.010 63.158 0.00 0.00 40.74 4.20
3450 3526 2.444140 TTAGCTCTCCCGGCTCCC 60.444 66.667 0.00 0.00 40.74 4.30
3451 3527 2.798364 GGTTAGCTCTCCCGGCTCC 61.798 68.421 0.00 0.00 40.74 4.70
3452 3528 2.798364 GGGTTAGCTCTCCCGGCTC 61.798 68.421 9.88 0.00 40.74 4.70
3453 3529 2.764547 GGGTTAGCTCTCCCGGCT 60.765 66.667 9.88 0.00 43.02 5.52
3476 3552 2.063541 GAGAGAGAGAGAGCAGCGGC 62.064 65.000 0.00 0.00 41.61 6.53
3477 3553 0.464373 AGAGAGAGAGAGAGCAGCGG 60.464 60.000 0.00 0.00 0.00 5.52
3478 3554 0.940126 GAGAGAGAGAGAGAGCAGCG 59.060 60.000 0.00 0.00 0.00 5.18
3479 3555 2.158842 AGAGAGAGAGAGAGAGAGCAGC 60.159 54.545 0.00 0.00 0.00 5.25
3480 3556 3.387374 AGAGAGAGAGAGAGAGAGAGCAG 59.613 52.174 0.00 0.00 0.00 4.24
3481 3557 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
3482 3558 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
3483 3559 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3484 3560 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3485 3561 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3486 3562 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3487 3563 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3488 3564 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3489 3565 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3490 3566 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3491 3567 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3492 3568 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3493 3569 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3494 3570 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3495 3571 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3496 3572 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3497 3573 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3498 3574 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3499 3575 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3500 3576 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3501 3577 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3502 3578 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3503 3579 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3504 3580 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3505 3581 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
3506 3582 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
3507 3583 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
3508 3584 3.381590 CACGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
3509 3585 3.711086 CACGAGAGAGAGAGAGAGAGAG 58.289 54.545 0.00 0.00 0.00 3.20
3510 3586 2.159099 GCACGAGAGAGAGAGAGAGAGA 60.159 54.545 0.00 0.00 0.00 3.10
3511 3587 2.205074 GCACGAGAGAGAGAGAGAGAG 58.795 57.143 0.00 0.00 0.00 3.20
3512 3588 1.470805 CGCACGAGAGAGAGAGAGAGA 60.471 57.143 0.00 0.00 0.00 3.10
3513 3589 0.930310 CGCACGAGAGAGAGAGAGAG 59.070 60.000 0.00 0.00 0.00 3.20
3514 3590 1.087202 GCGCACGAGAGAGAGAGAGA 61.087 60.000 0.30 0.00 0.00 3.10
3515 3591 1.351707 GCGCACGAGAGAGAGAGAG 59.648 63.158 0.30 0.00 0.00 3.20
3516 3592 1.376037 TGCGCACGAGAGAGAGAGA 60.376 57.895 5.66 0.00 0.00 3.10
3517 3593 1.226267 GTGCGCACGAGAGAGAGAG 60.226 63.158 26.77 0.00 0.00 3.20
3518 3594 2.871099 GTGCGCACGAGAGAGAGA 59.129 61.111 26.77 0.00 0.00 3.10
3560 3636 4.530857 GGAGGGATGGCGTGGTCG 62.531 72.222 0.00 0.00 40.37 4.79
3561 3637 2.595009 GAAGGAGGGATGGCGTGGTC 62.595 65.000 0.00 0.00 0.00 4.02
3562 3638 2.610859 AAGGAGGGATGGCGTGGT 60.611 61.111 0.00 0.00 0.00 4.16
3563 3639 2.190578 GAAGGAGGGATGGCGTGG 59.809 66.667 0.00 0.00 0.00 4.94
3564 3640 2.190578 GGAAGGAGGGATGGCGTG 59.809 66.667 0.00 0.00 0.00 5.34
3565 3641 2.285368 TGGAAGGAGGGATGGCGT 60.285 61.111 0.00 0.00 0.00 5.68
3566 3642 2.190578 GTGGAAGGAGGGATGGCG 59.809 66.667 0.00 0.00 0.00 5.69
3567 3643 2.597903 GGTGGAAGGAGGGATGGC 59.402 66.667 0.00 0.00 0.00 4.40
3568 3644 2.386935 GGGGTGGAAGGAGGGATGG 61.387 68.421 0.00 0.00 0.00 3.51
3569 3645 0.030092 TAGGGGTGGAAGGAGGGATG 60.030 60.000 0.00 0.00 0.00 3.51
3570 3646 0.029989 GTAGGGGTGGAAGGAGGGAT 60.030 60.000 0.00 0.00 0.00 3.85
3571 3647 1.394963 GTAGGGGTGGAAGGAGGGA 59.605 63.158 0.00 0.00 0.00 4.20
3572 3648 0.549169 TTGTAGGGGTGGAAGGAGGG 60.549 60.000 0.00 0.00 0.00 4.30
3573 3649 0.618981 GTTGTAGGGGTGGAAGGAGG 59.381 60.000 0.00 0.00 0.00 4.30
3574 3650 0.618981 GGTTGTAGGGGTGGAAGGAG 59.381 60.000 0.00 0.00 0.00 3.69
3575 3651 0.195096 AGGTTGTAGGGGTGGAAGGA 59.805 55.000 0.00 0.00 0.00 3.36
3576 3652 0.328258 CAGGTTGTAGGGGTGGAAGG 59.672 60.000 0.00 0.00 0.00 3.46
3577 3653 1.279271 CTCAGGTTGTAGGGGTGGAAG 59.721 57.143 0.00 0.00 0.00 3.46
3578 3654 1.132657 TCTCAGGTTGTAGGGGTGGAA 60.133 52.381 0.00 0.00 0.00 3.53
3579 3655 0.490017 TCTCAGGTTGTAGGGGTGGA 59.510 55.000 0.00 0.00 0.00 4.02
3580 3656 0.613777 GTCTCAGGTTGTAGGGGTGG 59.386 60.000 0.00 0.00 0.00 4.61
3581 3657 0.613777 GGTCTCAGGTTGTAGGGGTG 59.386 60.000 0.00 0.00 0.00 4.61
3582 3658 0.192566 TGGTCTCAGGTTGTAGGGGT 59.807 55.000 0.00 0.00 0.00 4.95
3583 3659 0.613777 GTGGTCTCAGGTTGTAGGGG 59.386 60.000 0.00 0.00 0.00 4.79
3584 3660 0.246635 CGTGGTCTCAGGTTGTAGGG 59.753 60.000 0.00 0.00 0.00 3.53
3585 3661 0.389948 GCGTGGTCTCAGGTTGTAGG 60.390 60.000 0.00 0.00 0.00 3.18
3586 3662 0.389948 GGCGTGGTCTCAGGTTGTAG 60.390 60.000 0.00 0.00 0.00 2.74
3587 3663 1.669440 GGCGTGGTCTCAGGTTGTA 59.331 57.895 0.00 0.00 0.00 2.41
3588 3664 2.426023 GGCGTGGTCTCAGGTTGT 59.574 61.111 0.00 0.00 0.00 3.32
3589 3665 2.358737 GGGCGTGGTCTCAGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
3590 3666 2.526873 AGGGCGTGGTCTCAGGTT 60.527 61.111 0.00 0.00 0.00 3.50
3591 3667 3.314331 CAGGGCGTGGTCTCAGGT 61.314 66.667 0.00 0.00 0.00 4.00
3592 3668 4.087892 CCAGGGCGTGGTCTCAGG 62.088 72.222 17.92 0.00 42.17 3.86
3605 3681 1.408453 GGAACCGGATCCCTACCAGG 61.408 65.000 19.83 2.57 33.05 4.45
3606 3682 0.398664 AGGAACCGGATCCCTACCAG 60.399 60.000 25.99 0.00 40.59 4.00
3607 3683 0.935942 TAGGAACCGGATCCCTACCA 59.064 55.000 25.99 4.97 40.59 3.25
3608 3684 1.336131 GTAGGAACCGGATCCCTACC 58.664 60.000 25.99 8.73 44.02 3.18
3610 3686 3.856774 GGTAGGAACCGGATCCCTA 57.143 57.895 25.99 19.32 40.59 3.53
3611 3687 4.722389 GGTAGGAACCGGATCCCT 57.278 61.111 25.99 20.28 40.59 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.