>input_sequence_46233
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-------------------------------------------------------------------ATGGCCTCCTCCG
CTTCCGTTGCGGTCCTCACCGCACCCCCCTTTCCCACTTGCCCCTC------------CTCCGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCCACCCGCGTCGGGAGAAACCCGC------CCTCCTCCGCAGCATCAGCAGAGGCCGCGGT----
--------GGTGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCCCTGGCGCGTGCGGGCGAAGTCGACCAGGTGC
TCGCCCTCTTCACCGAGCTCAGGGCTTCCAGAACCGGCCCGGGTGGTGCCTGGCCGCCCAGTGTGCTCTGCTACAACACT
CTCGTCAACGCGCTCGCACAAGCTGGCCGCGTGGAGGAGGCACACGACGCGTTCGACGAAATGCTTGCAGCAGGGGTGGC
GCCCAATGCATCGTCCCTCAACATCCTTGTCAAGCTGCATTCGTGGAGATCTGCGCGGTTT---GACCTCGCGTACGAGG
TGATCATCCGGTTGCAAGAGCTCGGGGTGGAAGCTGACGTGGGCACTTACTCCACGCTTGTCACGGGGCTGTGCCGTGTG
GGGAGAGTGGGCGAGGCATGGGGCGTGCTCGAGTGGATGCTGGAAGTGGGGTGCCGTCCCATGGTGCAAACTTATACGCC
CATTGTACAGGGGTATTGCCGTGAAGGTCGTGTCGACGAGGCCAAGGAGCTGATGTCCACGATGGAAAA---TACTGGTT
GTCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGTGATGCTGCCAGATTTGACGAAGTCAGGCAGGTT
TTAATGGATAGTAGAACCAAGGATTGGAAACCCAGTACTGTCACCTACAACACATTTATGAATGGTCTCTGCAAGAAAGG
TATGGCTAAGGAAGCACTTGAGCAGTTGGATGTTATGCTCGGCGAAGGGCTGGATCCCACAGATTTCACTTTGAGTATTC
TTCTGAATTGCCTTTGCCATGACAAGAGGATTCATGATGCCGTATGCTTGCTGGAGAGGAGCACA---TCATTGAAATGC
TATGCTGGTGTTGTTGCATACAACACTGTGATGAGCAGGTTAGGTGAAATGGGACATTGGATGGGTGTTCTAAAGTTGTT
AACAGACATGATCAAGAGAGGTGTCATGCCAAACACGAGGACGTTCAACATTGTCATTCGTAGTCTTTGCTTTCGCCGAA
AGTTCTCCATAGCCAAGAGCCTCGCAAGTAACCAAGGTTTTGCTGCAAATGTCGTGACATACAACACACTCATTTATTTT
GTTTTTTACTACAGTCGAAAGCTCAGTGAGGTGAAGGACCTAATATTTGACATGACAGCAGAGAGGATTGCTCCAGATGA
AGTTACCTACACTATAATCGTTGATGGATTATGCAGAGATGGATTTTTTGATACAGCCACTAGT---TACTTTCTAGAAT
CGCTTGAGATTGGACTGTCAAGGGATCTTTTTGCTGTCCTTACAAACAGGCTTGCTCACAATGGCAAAATCTGGGAGACT
ATTCACATATTCAAGGGAATGGAAGAAA---AAGGTTTAATCCCTGACAATTCTATATTTGACCTCACAATCAGAATATT
CTGTAGGGCTGGTTATTGTCACGACACAGATATGTTTAAGCTTAACTTTATTCTGGATACGATGTTGGGAAAGCAGTGA-
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>chr1B_1_TraesCS1B01G137400
TTATTATTTTTTATAGTTTTCACAATATATGGTGAACATTTATTTCAAATACACGTCGAACTTGCTCTAGTATATGATGA
ACATTTT-AAATACACATTGAACTTTTTTATATATGATGAGCACTTTTTGTTATATATATGGTGAACATTTTAAATACAC
ATGGAACATTTCTTAATATATGGTGAA-TTTTTTTAACTATATATGATGAACATTTTTATAATGCACACATAACATTTGT
TAATATACATTGAACTTTTATATATAACACATACTGAACAACTTTCTAAACTATATATTCCTATTTTTAATAAGTTTTAA
AATATCTAGCTACTAAAAACAACAGCTGA-TTTTTTGTATGAAAATCTGACTTAGAAACCAAAGAAAAATAATAGAAAAC
GGCAGAGTGGGCCGTCCCACGGGCGTCATACACTCATACTAGACCGGTCATGGGCAGAGTGGGCTGAAGCATATACTGTG
GTTGGTTGCAGC---------------------CCCACGCAAAACCCAGCCGTTGGCATCCCAAAAGGGTTACANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CATCCCAAATCAGTCTCTCCTCGGTCTCTCTCCCCCCTG---CGCCGCCACCCCCACCGCCACGGCGCCTGCCGGTGAAC
CCCTCCGTTGGCGACCATCGCGCTCGCCACCACCCTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCCTCCG
CTTCCGTTGCGGTCCTCACCGCACCCCCCTTTCCCACTTGCCCCTC------------CTCCGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCCACCCGCGTCGGGAGAAACCCGC------CCTCCTCCGCAGCATCAGCAGAGGCCGCGGT----
--------GGTGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCCCTGGCGCGTGCGGGCGAAGTCGACCAGGTGC
TCGCCCTCTTCACCGAGCTCAGGGCTTCCAGAACCGGCCCGGGTGGTGCCTGGCCGCCCAGTGTGCTCTGCTACAACACT
CTCGTCAACGCGCTCGCACAAGCTGGCCGCGTGGAGGAGGCACACGACGCGTTCGACGAAATGCTTGCAGCAGGGGTGGC
GCCCAATGCATCGTCCCTCAACATCCTTGTCAAGCTGCATTCGTGGAGATCTGCGCGGTTT---GACCTCGCGTACGAGG
TGATCATCCGGTTGCAAGAGCTCGGGGTGGAAGCTGACGTGGGCACTTACTCCACGCTTGTCACGGGGCTGTGCCGTGTG
GGGAGAGTGGGCGAGGCATGGGGCGTGCTCGAGTGGATGCTGGAAGTGGGGTGCCGTCCCATGGTGCAAACTTATACGCC
CATTGTACAGGGGTATTGCCGTGAAGGTCGTGTCGACGAGGCCAAGGAGCTGATGTCCACGATGGAAAA---TACTGGTT
GTCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGTGATGCTGCCAGATTTGACGAAGTCAGGCAGGTT
TTAATGGATAGTAGAACCAAGGATTGGAAACCCAGTACTGTCACCTACAACACATTTATGAATGGTCTCTGCAAGAAAGG
TATGGCTAAGGAAGCACTTGAGCAGTTGGATGTTATGCTCGGCGAAGGGCTGGATCCCACAGATTTCACTTTGAGTATTC
TTCTGAATTGCCTTTGCCATGACAAGAGGATTCATGATGCCGTATGCTTGCTGGAGAGGAGCACA---TCATTGAAATGC
TATGCTGGTGTTGTTGCATACAACACTGTGATGAGCAGGTTAGGTGAAATGGGACATTGGATGGGTGTTCTAAAGTTGTT
AACAGACATGATCAAGAGAGGTGTCATGCCAAACACGAGGACGTTCAACATTGTCATTCGTAGTCTTTGCTTTCGCCGAA
AGTTCTCCATAGCCAAGAGCCTCGCAAGTAACCAAGGTTTTGCTGCAAATGTCGTGACATACAACACACTCATTTATTTT
GTTTTTTACTACAGTCGAAAGCTCAGTGAGGTGAAGGACCTAATATTTGACATGACAGCAGAGAGGATTGCTCCAGATGA
AGTTACCTACACTATAATCGTTGATGGATTATGCAGAGATGGATTTTTTGATACAGCCACTAGT---TACTTTCTAGAAT
CGCTTGAGATTGGACTGTCAAGGGATCTTTTTGCTGTCCTTACAAACAGGCTTGCTCACAATGGCAAAATCTGGGAGACT
ATTCACATATTCAAGGGAATGGAAGAAA---AAGGTTTAATCCCTGACAATTCTATATTTGACCTCACAATCAGAATATT
CTGTAGGGCTGGTTATTGTCACGACACAGATATGTTTAAGCTTAACTTTATTCTGGATACGATGTTGGGAAAGCAGTGAA
CTGAACCCTTGTGTATCTAGGGAAGCCGGCAACAATTGAAGGTAGCGTACTCTTTCTTTCTGTTCTTCTGGTGATTCCAA
TTTAGATGGATTAATGTTGTTCCCACTGCTGAATACTTGCGGATGAATAACAATAGTATATTTTACACTGAACTTGCAAC
TTTGTTCTAACCATTGCAAT---TAGCATTTGAGATTACGGAATCTGAATCTATAAGTGTTGCATGCCAAATTGTTGTGC
CGTGTAATTATCAATGGCTCTCAATGATCTTTGTTCCAAACAATCATCACTAGATTTTCCTCTAACCATATTTTATTATG
TGTTCTCACTTCTCAGAAATGTTGCCTGTACCATAAAAATCAGACATAATGTGCTAATTAATAAGAAAATTTGTCCCTTT
TGAGGGAAAACGAAAGTTCTTGTGCCTAAACAAATATTTTCTTTGTAGCACATTATAAGTGAGTAACATATAGGAGTAGT
TATATTCATTTTTCTGCCTGGTTCTCAAGTAGGGATGCAAATTTCTGATCTTCAGGGTACCCTCTGACCCTTGTTTGTTC
AACCAAATGAACTAAATTTTCAAAGTGATGTGACTTTTAAAAGTTTAGTTCATTTGGTTGAACTAAAGAGGGCCAGAGTG
TTATGACCGGCATATTAGGGGCTTAGCCCAGTTAGTTGTGGCCCAGTTTATCTTATCGTTATTAGGGGCTTAGCCCAATT
ATCTTGTTAGGAGGATTATATAAACTCGTGTAAGGACCCGTTTTGGGATTAAGCAAGAAGCAATCATATTTGCCCGGCTT
CCTTAGGGAGCCGGGAGAGCTAACCCTAGCCGCCGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCGTGCGCACGCAACGACGGCGCCCCAGCGCCGGCGACCACGCCATCCCTCCTTCCACCCCTACAACCTGAGACCACGC
CCTGGTAGGGATCCGGTTCCTACCAATTTGGTATCAGATAGC
>chr1A_4
TTATTT--TTTTACAGTTTTCACAATATATGGTGAACATTTATTTCAAATACATGTCAAACTTGTTCTAGTATACAATGA
ACATTTTTAAATATACATTGAT-TTTTCTATATATGATGAACATTTTTTGTTATAT----------------------AC
ATGGAACATTTCTTAATATATGGTGAACTTTTTCTAATTATATATGATGAACATTTTTGTAATACGCACATAACATTTGT
TAACAGACATTGAACTTTTATATATAACACATACTGAACAATTTTATAGACTATATATTTCTATTTTTAATAGGTTTTAA
AATACCTAGCTACTAAAAACAACAGCCGGTTTTTTTGTATGAAAAATAGTCTTAGAAACCGAAGAAAAAAAACGGTCATG
GGCAGAGTGGGCCGTCCCATTTGCGCTGGACTTCAGCGAACGCTCCTCCTATC------TGGGCTGAAGCTTATACTCCG
GTTGGTTGCAGCTCCGGCCCACGTCTACAAAACCCCACGCAAAAACCCGCCTTGGCATGCCCAAAAGGGCTAGCGCTTCC
CCGCCGCCGTTTCAGCCCAGCTGCCC------------------------------------------------------
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CATCCCAAATCAGTCTCTCCTCGGTCTCTCTCCTCCCTG---CGCCGCCACCCCCGCCGCCACGGCGCCTGCCGGTGAAC
CCCTCCGTTGGCGACCATCGCGCTCGCCACCGCCCTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCCTCCG
CCTCCGTTGCGGCCCTCACCGCACTCCCCTTTCCCACTTGCCCCTC------------CTCCGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCCACCCGCGTCGGGAGAAACCCGC------CCTCCTCCGCAGCATCAGCAGAGGCCGCGGT----
--------GGTGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCCCTGGCGCGTGCGGGCGAAGTCGACCAGGTGC
TCGCCCTCTTCAGAGAGCTCAGGGCTTCCAGAACCGGGCCGGGAGGTGCCTCGCCGCCCAATGTGCTTTGCTACAACACT
CTCGTCAATGCGCTCGCAGAAGCTGGCCGGGTGGAGGAGGCCCACAACGCGTTCGATGAAATGCTTGCAGCAGGGGTGGC
GCCCAATGCATCGTCCCTCAACATCCTTGTCAAGCTGCATTCGTGGAGATCTGCGCGGTTT---GACCTCGCGTACAAGG
TGATCATCCAGTTGCAAGAGCTCGGGGTGGAAGCTGAGGTGGGCACCTACTCCACGCTTGTCACGGGGCTGTGCCGTGTG
GGGAGAGTGGGCGAGGCATGGGGCGTGCTCGAGTGGATGCTGGAAGTGGGGTGCCGTCCCATGGTGCAAACTTACACGCC
CATTGTACAGGGGTATTGCCGTGAAGGTCGTGTCGACGAGGCCAAGGAGCTGATGTCCACGATGGAAAA---TGCTGGTT
GTCCTCCCAATGTAGTCACCTACAATATTCTGATCAGGGCTTTGTGTGATGCTGCCAGATTTGACGAAGTCAGGCAAGTT
TTAACGGATAGTAGAACCAAGGATTGGAAACCCAGTACTGTCACCTACAACACATTTATGAATGGTCTCTGCAAGAAAGG
TATGGCTAAAGAAGTACTTGAGCAGTTGGATGTTATGCTAGGCGAAGGGCTGGATCCCACAGATTTCACTTTGAGTATTC
TTCTGAATTGCCTTTGCCATGACAAGAGGATTCATGATGCCGTATGCTTGCTGGAGAGGAGCACA---TCATTGAAATGC
TATGCTGGTGTTGTTGCATACAACACTGTGATGAGCTGCTTAGGTGAAATGGGACATTGGATGAGTGCTCTAAAGTTGTT
GACAGACATGATCAAGAGAGGTGTCATGCCAAACACGAGGACATTCAACATTGTCATTCGTAGTCTTTGCTTTCGCCGAA
AGTTCTCCATAGCCAAGAGCCTCGCAAGTAACCAAGGTTTTGCTGCAAATGTCGTGACATACAATACACTCATTTATTTT
GTTTTTTACTACAGTCGAAAGCTCAGTGAGGTGAAGGACCTAATATTTGACATGACAGCAGAGAGGATTGCTCCAGATGA
AGTTACCTACACTATAATCGTTGATGGATTATGCAGAGATGGATTTTTTGATACAGCCACTAGT---TACTTTCTAGAAT
CGCTTGAGATTGGACTGTCAAGGGATCTTTTTGCTGTCCTTACAAACAGGCTTGCTCACAGTGGCAAAATCTGGGAGACA
ATTCACATATTCAAGGGAATGGAAGAAA---AAGGTTTTATCCCCGATAGTTCTATATTTGACCTCACAATCAGAATATT
CTGTAGGGCTGGTTATTGTCACGACACAGATATGTTTAAGGTTAACTTTATTCTGGATACGATGTTGGGAAAGCAGTGAA
CTGAACCCTTGTGTATCTAGGAAAGCCGGCAATAATTGAAGGTAGCATACTCTTTCTTTCTGTTCTTCTGGTGATTTCAA
TTTAGATGGATTAATGTTGTTCTCACTGCTGAATACTTGCGGATGAATAACAATAGTATATTTTACACCGAACTAGCAAC
TTTGTTCTAACCATTGCAAT---TAGCATTTGAGATTACGGAATCTGAAACTTTAAGTGTTGCATGCCAAATTGTTGTGC
TGTGTAATTATCAATGGCTCTCAATGATCTTTGTTCCAAACAATCATCACTAGATTTTCCTCTAACCATATTTTATTATG
TGTTCTCACTTCTCAGAAATGTTGCCTGTACCATAAAAATCAGACATAATGTGCTAAATAATAAGAAAATTTGTCCCTTT
TGAGGGAAAACGAAAGTTCTTGTGCCTAAACAAACATTTTCTTTGTAGCACATTATGATTGAGTAACATATAGGAGTAGT
TATATTCGTTTGTCTGCCCGGTTCTCAAGTAGGGATGCAAATTTCTGACCCTCAGGGCACCCTCTGACCCTTGTTTGTTC
AACCAAATGGACTAAATTTTCAAAGTGATGTGACTTTTAAAAGTTTAGTTCATTTGGTTGAACTAAAGAGGGCCAGAG--
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>chr1D_857
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CATCCCAAATCAGTCTCTCCTCGGTCTCTCTCCTCCGTG---CGCCGCCACCCCCGCCGCCACGGCGCCTGCCGGTGAAC
CCCTCCGTTGGCGACCATCGCGCTCGCCACCGCCCTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCCTCCG
CCTCCGTTGCGGTCCTCACCGCACCCCCCTTTCCCACTTGCCCCTC------------CTCCGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCCACCCACGTCGGGAGAAACCCGC------CCTCCTCCGCAGCATCAGCAGAGGCCGCGGT----
--------GGTGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCCCTGGCGCGTGCGGGCGAAGTCGACCAGGTGC
TCGCCCTCTTCACCGAGCTCAGGGCTTCCAGAACCGGCCCGGGTGGTGCCTCGCCGCCCAGTGTGCTCTGCTACAACACT
CTCGTCAACGCGCTCGCAGAAGCTGGCCGCGTGGAGGAGGCCCACAACGCGTTCGACGAAATGCTTGCAACAGGGGTGGC
GCCCAATGCATCGTCCCTCAACATCCTTGTCAAGCTGCATTCGTGGAGATCTGCGCGGTTT---GACCTCGCGTACCAGG
TGATCATCCGGTTACAAGAGCTCGGGGTGGAAGCTGACGTGGGCACCTACTCCACGCTTGTCACGGGGCTGTGCCGTGTG
GGGAGAGTGAGCGAGGCATGGGGCGTGCTCGAGTGGATGCTGGAAGTGGGGTGCCGTCCCATGGTGCAAACTTACACGCC
CATTGTGCAGGGGTATTGCCGTGAAGGTCGTGTCGACGAGGCCAAGGAGCTGATGTCCACGATGGAAAG---TGCTGGTT
GTCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGTGATGCTGCCAGATTTGACGAAGTCAGGCAGGTT
TTAATGGATAGTAGAACCAAGGATTGGAAACCAAGTACTGTCACCTACAACACATTTATGAATGGTCTCTGCAAGAAAGG
TATGGCTAAGGAAGCACTTGAGCAGTTGGATGTTATGCTAGGCGAAGGGCTGGATCCCACAGATTTCACTTTGAGTATTC
TTCTGAATTGCCTTAGCCATGACAAGAGGATTCATGATGCCGTATGCTTGCTGGAGAGGAACACA---TCATTGAAATGC
TATGCTGGTGTTGTTGCATACAACACTGTGATGAGCAGGTTAGGTGAAATGGGACATTGGATGGGTGTTCTAAAGTTGTT
GACAGACATGATCAAGAGAGGTGTCATGCCAAACACGAGGACGTTCAACATTGTCATTCGTAGTCTTTGCTTTCGCCGAA
AGTTCTCCATAGCCAAGAGCCTCGCAAGTAACCAAGGTTTTGCTGCAAATGTCGTGACATACAATACACTCATTTATTTT
GTTTTTTACTACAGTCGAAAGCTCATTGAGGTGAAGGACCTAATATTTGACATGACAGCAGTGAGGATTGCTCCAGATGA
AGTTACCTACACTATAATCGTTGATGGATTATGCAGAGATGGATTTTTTGATACAGCCACTAGT---TACTTTCTAGAAT
CGCTTGAGATTGGACTGTCAAGGGATCTTTTTGCTGTCCTTACAAACAGGCTTGCTCACAATGGCAAGATCTGGGAGACT
ATTCACATATTCAAGGGAATGGAAGAAA---AAGGTTTTATCCCTGATAATTCTATATTTGACCTCACAATCAGAATATT
CTGTAGGGCTGGTTATTGTCACGACACAGATATGTTTAAGCTTAACTTTGTTCTAGATACGATGTTGGGCAAGCAGTGAA
CTGAACCCTTGTGTATCTAGGAAAGCCGACAATAATTGAAGGTAGCGTACTCTTTCTTTCTGTTCTTCTGGTGA-TTCAA
TTTAGATGGATTAATGTTGTTCCCACTGCTGAATACTTGCGGATGAATAACAATAGTATATTTTACACTGAACTTGCAAC
TTTGTTCTAACCATTGCAAT---TAGCATTTGAGATTTCGGAATCTGAATCTATAAGTGTTGCATGCCAAATTGTTGTGC
TGTGTAATTATCAATGGCTCCCATTGATCTTTGTTCCAAACAATCATCACTAGATTTTCCTCTAACCATATTTTATTATG
TGTTCTCACTTCTCAGAAATGTTGCCTGTACCATAAAAATCAGACATAATGTGCTAATTAATAAGAAAATTTGTCCCTTT
TGAGGGAAAACGAAAGTTCTTATGCCTAAACAAATATTTTCTTTGTAGCACATTATAATTGAGTAACATATAGGAGTAGT
TATATTCGTTTTTCTGCCTGGTTCTCAGGTAGGGATGCAAATTTCTGATCCTCGGGGTACCCTCTGACCCTCGTTTGTTC
AACCAAATGAATTAAATTTTCAAAGTGATGTGACTTTTAAAAGTTCAGTTCATTTGGTTGAACTAAAGAGGGCCAGAG--
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>chr1B_858
ATCCCAA-------------------------------------------------------------------------
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------AAATCAGTCTCTCGG-----TCTCTCCTCCCCC---CGCCGCCTCCACCACCGCCACGGCGCCCGCCGGTGAAC
CCCTCCGTTGGCGACCATCGCGCGCGCCACCGCCTTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCTTTCG
CCTCCGTTGCGACCCTC---------CCCTCTCCCTCCTGCTCCTCCTCCGA---------CGATGACTATAACGACGCC
AAGCCCCTCCCGCCTCTACCCGCATCGAAAGAAATACGC------CCTCCTCCGCAGCACCAGCACCAGCACCAGCAGCA
GCCGCAGCGGCGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCC---GCGCGCGCGGGCGACGTCGACCAGGTGC
TCGCCCGCTTCGCCGAGCTCAGGGCTTCAGGGACC---------------------CCCAGTGTGCTCTGCTACAACACT
CTCATGAACGCGCTCGTGGAAGCTGGCCATGTGAAGGACGCCCACGACGCGTTCGGCGAAATGCTTGCGGCAGGGGTGGC
GCCCAATGCGTCGTCCTGTAACATCCTTCTCAAGCTGCACTCGTGGATCTCTGACGACGACGACGACTCTCCGTACAAGG
CGATTCTCTGGATGCGAGAGGCTGGGGTGGAACCTGACGTGGGTACGTACTCCACACTTATCACGGGGCTGTGCCGTGCG
GGGAGGCTCCCCGAGGCATGGGGTGTGCTTGAGTGCATGCTGGAACAGGGGTGCCGTCCCATGGTGCATACTTACACGCC
CATTGTACAGGGATATTGCCGCGAGGGCCGCGTCGGGGAGGCCATGGACCTGATGGCCACGATGGAAGC---TGCTGATT
GCCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGTGATGCCGCCAAATTTAAGGAAGTCAAGCAGATT
TTAAAGGAGAGTAGAACCAAGGATTGGACGCCCAGTATTGTCACCTACAATACGTTTATGAACGGTCTCTGCCAGAAAGG
TAAGGCTAAGGAAGCACTTGTGCTGCTGGGTGTTATGCTGGGCAAAGGGTTGGATCCCACAGATTTTACTTTGAGCATTC
TTCTGAATTGCCTTTGCCATGCCTCAAGGATTTCCCATGCCAGATTCTTGCTAGAGAGGAGTACGT---CATCGAGATGG
TATGCTGGTGTTGTTGCATACGACACTGTGATGGGCAGGTTATGTAAAATGGGACATTGGAGGGGTGTTCTGAAGCTGTT
GACAGACATGATCAAGAAAGGTGTGATGCCAAACACGAGGACATTCAACATTGTCATTCGTAGTCTTTGTATTGGTCGAA
AGTGCTCCGCAGCCAAGAGCCTGGTCTGTAACCAAGGGTTTGCTGCAAATGTCGTGACATACAATACACTGATTGATT--
-GGTTTTTCTACCATCGAAAGCGTAGTGAGGTGGGCCACCTAATGTGTGACATGGCAGCAGGAAATATTGCTGTAGATGA
AGTTACTTACACTATATTCGTTGTTGGATTATGCAGAGATGGAAATTTTGCTAAGGCCAGTAGT---TGCTTTCTAGAAT
CGCTAGAGAATGGACTGTCAATGGATCTTCTTGGCGTCCTTATAAACAGGCTCGCTTACAATGGCAAAATCCCGGAGACT
ATTCGCATATTCCAGAATATGAGAGAAAGAAAAGGGCTTTTCCTAGATAATTCTATATTTGACCTCACAATTGAAAGATT
CTGTAGGGCCGGTTATTGTCATGACAAATATATACATAATCTTAACTCTATTCTGGATGCAATGTTGGGAAAGCAGTGAA
CTGAACTCTTGTGGATCTAGGAAGCAGACG-ATGATTGGAGGTAGCTTACTCTTTCTTTCTGTTTTTCTCGTGATCTGAA
TTTAGGTGGAGTATTATTGTTCTCACTGCTGAATTAGTCCAATGAATG-ACAATAGGATGTTCTGTGCAGAACTTGCAAC
TTTGTTCTAGTAACAATTTCGGCTAGCATTCAAATTTACGGAATCTGAAATTGTAAGTGTATCGTACCCAATTGTTGTGC
TATGTAATTATCAATGGTTCCAAATGATCTTTGTTCTAGACAATCATCACTAGATTTTCCACTAACCATATCTTATTGTG
TGTTCTCACTTCTCAACAATGTTGCATGTCCTATAACAATCAGATATGATGTGCTAATTGGTAGGAAAATTTGCCGCTTT
TGAGGGAAATGGAAGCTTCCTGTGCCTAA---------------------------------------------------
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>chr1D_858
ATCCC-A-------------------------------------------------------------------------
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------AAATCAGTCTCTCTGCCGCCGCCA-----CCTCCGCCACCACCTCCACCACCGCCACGGCGCCCGCCGGTGAAC
CCCACGGTTGGCGACCATCGCGCGCTCCACCGCCCTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCCTTCG
CCTCCGTTGCGACCCTC---------CCCCTTCCCACCTGCTCCTCCTCCGA---------CGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCTACCCGCATCGAAAGAAATACGC------CCTCCTCCGCAGCACCAGCAGCAGCCGCCGCCGCA
GC------GGCGGCAGCTGGAGCGCGACTGCAACGTGGCCATGAAGGCCCTGGCGCGCGCGGGCGACGTCGACCAGGTGC
TCGCCCGCTTCGCCGAGCTCAGGGCTTCCGGGACC---------------------CCCAGCGTGCTCTCCTACAACACT
CTCATGAACGCGCTCGTGGAAGCTGGCCGTGTGAAGGACGCCCACGACGCGTTCGGCGAAATGCTTGCGGCAGGGGTGGC
GCCCAATGCGTCGTCCTGCAACATCCTCCTCAAGCTGCACTCGTGGACCTCCGACGACGACGAC---TCTCCGTACAAGA
CGATCCTCTCGATGCGAGAGGCTGGGGTGGAACCTGACGTGAGCACGTACTCCACGCTTATCACGGGACTGTGCCGTGTG
GGGAGGCTCCCCGAGGCATGGGGTGTGCTCGAGTGCATGCTGGAGCAGGGGTGCCGTCCCATGGTGCATACTTACACGCC
CATTGTACAGGGATATTGCCGCGAGGGCCGTGTCGGGGAGGCCATGGACCTGATGGCCATGATGGAAAAATGTGCCGGTT
GCCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGCGACGCCGGCCAATTTAATGAAGTCAAGCAGCTT
TTAACGGAGAGTAGAACCAAGGGTTGGACGCCCAGTATTGTCACCTACAATACGTTTATGAATGGTCTCTGCCAGAAAGG
TAAGGCTAAGGAAGCACTTGTGCTGCTGGGTGTTATGCTGGGCAAAGGGTTGGACCCCACAGATTTTACTTTGAGCATTC
TTCTGAATTGCCTTTGCCATGCCTCGAGGATTTCCCATGCCAGATACTTGCTAGAGAGGAGTACGTC---ATCGAGATGG
TATGCTGGTGTTGTTGCATACAACACTGTGATGGGCAGGTTATGTGAAATGGGACATTGGAGGGGTGTTCTGAAGCTGTT
GACTGACATGATCAAGAAAGGTGTGATGCCAAACACGAGGACGTTCAACATTGTCATTCGTAGTCTTTGCATTGGTCGAA
AGTGCTCCGCAGCCAAGAGCCTGGTCTGTAACAAAGGGTTTGCTGCAAATGTCGTGACATACAATACACTGATTGATT--
-GGTTTTTCTACCATCGAAAGCTTAGTGAGGTGGGGCACCTACTTTCTGACATGGCAGCAGGAAAAATTGCTGTAGATGA
AGTTACTTACACTATATTCGTTGTTAGATTATGCAGAGATGGAAATTTTGCTAAGGCCAGTAGT---TG-----------
--CTAGAGAATGGACTGTCAATGGATCTTCTTGGCGTCCTTATAAACAGGCTTGCTTACAGTGGCAAAATCCCGGAGACT
ATTCGCATATTCCAGAATATGAGAGAAAGAAAAGGGCTTTCCCTAGATAATTCTATATTTGACCTCACAATTGAAAGATT
CTGTAGGGCCGGTTATTGTCACGACAAATATATACATAATCTTAACTCTATTCTGGATGCAATGTTGGGAAAGCAGTGAA
CTCAACTCTTGTGGATCTAGGAAGCAGACG-ATAATTGGAGGTAGCTTACTCTTTCTTTCTGTTTTTCTCGTGATCTGAA
TTTAGATGGAGTAGTATTGTTCTCACTGCTGAATTCGTCCAATCAATG-ACAATAGGATGTTCTGTGCAGAACTTGCAAC
TTTGTTCTAGTAACAATTTCGGCTAGCATTCAAATTTACGGAATCTGAATTTGTAAATGTGTCATACCAAATTGTTGGGC
TATGTAATTATCAATGGTTCCAAATGGTCTTTGTTCTAGACAATCATCACTAGATTTTCCACTAACCATATCTTATTGTG
TGTTCTCACTTCTCAACAATGTTGCATGTCCAATAACAATCAGATATGATGTACTAATTGGTAGGAAAATTTGCCGCTTT
TGAGGGAAATGGAAGCTTCCTGTGCCTAAATAGTATTTTCCTTTGTGCCACATATAATGA--------------------
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>chr1A_877
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--------------------TCAGTCTCTCTCCTCCCTCCGCCGCCACCTCCGCCACCGCCACGGCGCCCGCCGGTGAAC
CCCACCGTTGGCGACCATCGCGCGCGCCACCGCCCTCCCCACCGCTCGGCTCCTCCTGCGCGGGCGCATGGCCTCCTTCG
CCTCCGTTGCGACCCTC---------CCCTTTCCCACCTGCTCCTCCTCCGA---------CGACGACTCTGACGACGCC
AAGCCCCTCCCGCCTCTACCCACATCGGAGGAAATATGC------CCTCCGCAGCAGCACCAGCAGCAGCCGCAGT----
--------GGCGGCAGCTGGAGCGCGACTGCAACGTAGCCATGAAGGCCCTGGCGCGCGCGGGCGACGTCGACCAGGTGC
TCGCCCTCTTCGCCGAGCTCAGGACTTCCGGAACC---------------------CCCAGTGTGCTCTGCTACAACACT
CTCCTCAACGCGCTCGTCGAAGCTGGCCATCTGGAGGAGGCCCCCAAGGTGTTCGACGAAATGTGTGCGTCTGGGGTGCG
GCCCGATGCGTCATCCCACAACATCTTTCTCAAGCTGCGTTCGTGGACCACCGACCACGACGAC---TCTCCGTACAAGG
TGATCATCCGGATGCAAGAGCTTGGGATGAAAGTTGACGTGAGCACGTACTCTACAATTGTCACGGGGCTGTGCCGTGCG
GGGAAGCTCCTCGAGGCATGGGGTCTGCTTGAGTGGATGCAGGAAGCGGGGTGCCGTCCCATGGTGCATACTTACACGCC
AATTGTACAGGGATATTGCCGTGAGGGCCGTGTCAAGGAGGCCATGGACCTGATGGCCACGATGGAAGC---TGCTGATT
GCCCTCCCAATGTAGTCACCTACAATGTTCTGATCAGGGCTTTGTGCGACGCCGGCCAATTTAATGAAGTCAAGCAGCTT
TTAATGGAGAGCAGAACCAAGGGTTGGACGCCCAGTATTGTCACCTACAATACCTTTATGAATGGTCTCTGCAAGAAAGG
TAAGGCTAAGGAAGCACTTGCGCTGCTGGGTGTTATGCTGGGCAAAGGGTTGGATCCCACAGATTTTACTTTGAGCATTC
TTCTGAATTGCCTTTGCCATGCCTCGAGGATTTCCCATGCCAGATACTTGCTAGAGAGGAGTACGTCGTCATCGAGATGG
TATGCTGGTGTTGTTGCATACAACACTGTGATGGGCAGGTTATGTGAAATGGGACATTGGAGGGGTGTTCTGAAGCTGTT
GACAGACATGATCAAGAAAGGTGTGATGCCAAACACGAGGACGTTCAACATTGCCATTCGTAGTCTTTGCATTGGTCGAA
AGTGCTCCGCAGCCAAGAGCCTGGTCTGTAACCAAGGGTTTGCTGCAAATGTCGTGACATACAATACACTGATTGATT--
-GGTTTTTCTACCATCGAACGCCTAGTGAGGTGGGCCGCCTAATGTCTGACATGGCAGCAGGAAATATTGCTGTAGATGA
AGTTACTTACACTATATTCGTTGTTAGATTATGCAGAGATGGAAATTTTGCTAAGGCCAGTAGT---TGCTTTCTAAAAT
CGCTAGAGAATGGACTGTCAATGGATCTTCTTGGCGTCCTTATAAACAGGCTTGCTTACAATGGCAAAATCACGGAGACT
ATTCGCATATTCCAGAATATGAGAGAAAGAAAAGGGTTTTCCCTAGATAATTCTGTATTTGACCTCACAATTGAAAGATT
CTGTAGGGCCGGTTATTGTCATGACAAATATATACATAATCTTAACTCTATTCTAGATGCAATGTTGGGAAAGCAGTGAA
CTGAACTCTTGTGGATCTAGGAAGCAGACG-ATAATTGGAGGTAGCTTACTCTTTCTTTCTGTTTTTCTCGTGATCTGAA
TTTAGATGGAGTAGTATTGTTCTCACTGCTGAATTCGTCCAATGAATG-ACAATAGGATGTTCTGTGCAGAACTTGCAAC
TTTGTTCTAGTAACAATTTCGGCTAGCATTCAAATTTACGGAATCTGAATTTGTAAGTGTGTTGTACCAAATTGTTGTGC
TATGTAATTATCAATGGTTCCAAATGGTCTTTGTTCTAGACAATCATCACTAGATTTTCCACTAACCATATCTTATTGTG
TGTTCTCACTTCTCAACAATGTTGCATGTCCTATAACAATCAGATATGATGTGCTAATTGGTAGGAAAATTTGCCGCTTT
TGAGGGAAATGGAAGCTACCTGTGCCTAAATAGTATTTTCCTCTGTGCTACAT---------------------------
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>chr5D_891
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----------------------------------CCCTT---CGCCGCCACCTCCACCGCCACGGCGCC-GCTGCTGAAC
CCCTCCGTCGGCGATCATCGCGCTGGCCACAGCCCTTCTCACTTCTCGGCTCCTCCTCCGCGCGCGCATGGCCTCCTCCG
CCTCCTCTGCGGCTCTCTCCGCCCTCCCTTTTCCCACCTGCTTCTCCTCCGACGACGACTCCGACGACTCTGACGACGCC
AAGCCCATCCCGCCTCCACCCGTATCGGCAGAGACCTGCCCTCCTCCTCCTCCGCAGCATCAGCAGAAGCTGCGGC----
--------GATGGCAGCTGGAGCGCGAGTGCAACATGGCCATGAATGCCCTGGCGCGCGCGGGCGACGTCGACCAGGTGC
TCGCCATCTTCGCAGAGCTCTGGGCTTTCGGAACTGGCCCGGGTGGTGCCTCGCCGCCCAACGTGCTCTGCTACAACACG
CTCATCAACGCGCTGGCCGAAGCTGGTCACGTGGAGGAGGCCCACCTTGTGTTCGACGAAATGCTTGCAGCAGGGGTGGC
GCCCAACGTGTCGTCCCTCAACATCCTTGTCAAGATGTATTCGTGCAAACCTATGCAGTTT---GACCTCGCGTTCAATG
AGATCGTCCGGATGCGAGAGCTTGGGGTGGAAGCCGACGCGGGCACGTACTCCACGCTCGTCACGGGGCTGTGCCGCGCG
GGGATGGTCGAGGAGGCGTTGGGCGTGCTCGAATGGATGCGCGAAGAGGGGTGCCCTCCCATGGTGCAAACCTACACGCC
CATTGTACAACAATATTGCCGCAAGGGCCTCGTCGAGGAGGCCAAGAAGCTGATGGACAGGATGGAAGG---CGGCGGTT
GCCCTCCAAACATAGTTACCTACAATGTTCTGATCAGGGCTTTGTGTGATGCCACCGAATTTGAGGAGGTCAGGCAAGTT
TTGATGGAGAGTAGAACCGAAGGTTAGACGCCCAACACTGTCACATACAATACGTTTATGGATGGTCTCTGCAAGAAAGG
TAGGGCTAATGAAGCACTCGAGCAGTGGGATGTTATGGCAGGCCAAGGGTTGGAGCCCACGGATTTTACTTTCAGTATTC
TCCTGAATTGCCTTTGCCATGCCTTGAGGATTGCCTATGCCATACACTTGTTAGAGTGGAGTGCA---TCATTGGAACGG
TATGCCGGTGCTGTCGCGTACAACACTG--ATGAGCAGGTTATGCGAAATGGGTCGTTGGAAGCGTGTTCTGAAGCTGTT
GACAGACATGATCAAGAGAGGTGTGACGCCAAACACGAGGGCCTTCAACATTGCCATTCGTGCTCTTTGCTCCGGTGGGA
AGTTATCCATAGCCAGGGGCGTGGTCCGTAACCCAGGGGTTTCTGCAAACGTCGTGACGTATAATACGCTCATTTATTAT
TGGTTTCACTACTGTCGAGATCTTCATGAGGTTTGGCGCCTAATTTCCGACATGGCGGCAGAGAAGATTGCTCCAGATGA
AGTTACCTGCACTACAATCGTCCATGGGTTATGCAGAGATGGAAAGTACGATACGGCCACCAGAAACTACTTTCTACAAT
CGCTTGAGATTGTACTGTCAGGGGATCATCTTGACGTCCTTACAAACATGCTTGCTCGCAAAGGCAGAATCTG-------
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>SNPs
------SS-----S---------------------------------------S---S------S---------SS----
-------------S-------SS----S------------S--S------------SSSSSSSSSSSSSSSSSSSSSS--
---------------------------------S---S--------------------S----S-S--------------
---S-S-----------------------------------S---S--S----------S------------S-------
----S---------------------S-S----------------SSS-S----------S--------S--SS-SS-SS
-------------------SSS---SSSS--SSSSSSSSSS-SS-SSS-SSSSSSSSSS-----------S------SS-
--------------------------------------------S--S---S-S-SSSS----------S--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------------------------------S----------------------------------------------
-------------------------------S------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
------------------S----------------------S--------------------------------------
----------------------------------------------------------------------------S---
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------S-----
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S--------S--------------------------------
--------------------------------------------------------------------------------
---------------------S----------S-------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------S-----------------------------
------------------------------------------------------------------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------TACTAGACCGGTCATGGGCA------------------------
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>reverse_1517
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GAGG
TGATCATCCGGTTGCA----------------------------------------------------------------
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------------------------------------------
>forward_914
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------CTCTCCTCGGTCTCTCTCCC----------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1754
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ACTGGTT
GTCCTCCCAATGT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1567
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------GAAGCTGACGTGGGCACT---------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>reverse_3388
--------------------------------------------------------------------------------
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---------------------------CCAGTTAGTTGTGGCCCAGT---------------------------------
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------------------------------------------
