Multiple sequence alignment - TraesCS1B01G124100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G124100 chr1B 100.000 3564 0 0 1 3564 150661511 150665074 0.000000e+00 6582
1 TraesCS1B01G124100 chr1B 86.647 337 38 5 3232 3562 150801071 150801406 2.020000e-97 366
2 TraesCS1B01G124100 chr1B 92.574 202 14 1 1 201 57502775 57502574 4.500000e-74 289
3 TraesCS1B01G124100 chr1D 89.927 1092 53 29 1770 2843 101094665 101093613 0.000000e+00 1354
4 TraesCS1B01G124100 chr1D 89.045 1068 72 27 671 1728 101096169 101095137 0.000000e+00 1282
5 TraesCS1B01G124100 chr1D 91.209 546 22 11 3045 3564 101092934 101092389 0.000000e+00 719
6 TraesCS1B01G124100 chr1D 89.076 238 18 7 211 447 101096674 101096444 4.500000e-74 289
7 TraesCS1B01G124100 chr1A 92.561 941 45 12 1906 2843 104378804 104379722 0.000000e+00 1327
8 TraesCS1B01G124100 chr1A 90.368 924 42 17 671 1586 104377508 104378392 0.000000e+00 1170
9 TraesCS1B01G124100 chr1A 91.605 679 32 9 2902 3564 104379727 104380396 0.000000e+00 915
10 TraesCS1B01G124100 chr1A 87.273 330 39 3 3232 3559 104437742 104438070 1.210000e-99 374
11 TraesCS1B01G124100 chr4B 93.532 201 13 0 1 201 377799025 377798825 2.080000e-77 300
12 TraesCS1B01G124100 chr4B 92.118 203 16 0 1 203 660167571 660167773 1.620000e-73 287
13 TraesCS1B01G124100 chr4A 92.537 201 15 0 1 201 574836940 574837140 4.500000e-74 289
14 TraesCS1B01G124100 chr4A 92.040 201 16 0 1 201 668744267 668744067 2.090000e-72 283
15 TraesCS1B01G124100 chr4A 92.040 201 16 0 1 201 743515251 743515451 2.090000e-72 283
16 TraesCS1B01G124100 chr6B 92.040 201 16 0 1 201 57715665 57715865 2.090000e-72 283
17 TraesCS1B01G124100 chr2B 92.040 201 16 0 1 201 25808866 25809066 2.090000e-72 283
18 TraesCS1B01G124100 chr2A 92.040 201 16 0 1 201 24395764 24395964 2.090000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G124100 chr1B 150661511 150665074 3563 False 6582.000000 6582 100.000000 1 3564 1 chr1B.!!$F1 3563
1 TraesCS1B01G124100 chr1D 101092389 101096674 4285 True 911.000000 1354 89.814250 211 3564 4 chr1D.!!$R1 3353
2 TraesCS1B01G124100 chr1A 104377508 104380396 2888 False 1137.333333 1327 91.511333 671 3564 3 chr1A.!!$F2 2893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.035317 GAGATGCAGACACCCACACA 59.965 55.0 0.0 0.0 0.0 3.72 F
989 1064 0.106918 GCGAGGAGAGGAGAGGAGAA 60.107 60.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1348 0.037160 TCAAGATCAGCAAGCAGGCA 59.963 50.0 0.00 0.00 35.83 4.75 R
2890 3421 0.101219 GCAATGGACCTCGGAATTGC 59.899 55.0 9.87 9.87 45.56 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.453793 TGTGGGCAAACTGTTGAACG 59.546 50.000 0.00 0.00 36.83 3.95
20 21 0.869880 GTGGGCAAACTGTTGAACGC 60.870 55.000 0.00 0.00 36.83 4.84
21 22 1.299850 GGGCAAACTGTTGAACGCC 60.300 57.895 12.51 12.51 36.83 5.68
22 23 1.299850 GGCAAACTGTTGAACGCCC 60.300 57.895 10.68 0.00 36.83 6.13
23 24 1.435515 GCAAACTGTTGAACGCCCA 59.564 52.632 0.00 0.00 36.83 5.36
24 25 0.869880 GCAAACTGTTGAACGCCCAC 60.870 55.000 0.00 0.00 36.83 4.61
25 26 0.453793 CAAACTGTTGAACGCCCACA 59.546 50.000 0.00 0.00 36.83 4.17
26 27 0.454196 AAACTGTTGAACGCCCACAC 59.546 50.000 0.00 0.00 0.00 3.82
27 28 0.678366 AACTGTTGAACGCCCACACA 60.678 50.000 0.00 0.00 0.00 3.72
28 29 1.355210 CTGTTGAACGCCCACACAC 59.645 57.895 0.00 0.00 0.00 3.82
29 30 2.058829 CTGTTGAACGCCCACACACC 62.059 60.000 0.00 0.00 0.00 4.16
30 31 2.115911 GTTGAACGCCCACACACCA 61.116 57.895 0.00 0.00 0.00 4.17
31 32 1.821759 TTGAACGCCCACACACCAG 60.822 57.895 0.00 0.00 0.00 4.00
32 33 3.660111 GAACGCCCACACACCAGC 61.660 66.667 0.00 0.00 0.00 4.85
36 37 4.603535 GCCCACACACCAGCCCTT 62.604 66.667 0.00 0.00 0.00 3.95
37 38 2.198426 CCCACACACCAGCCCTTT 59.802 61.111 0.00 0.00 0.00 3.11
38 39 1.903404 CCCACACACCAGCCCTTTC 60.903 63.158 0.00 0.00 0.00 2.62
39 40 1.903404 CCACACACCAGCCCTTTCC 60.903 63.158 0.00 0.00 0.00 3.13
40 41 2.113139 ACACACCAGCCCTTTCCG 59.887 61.111 0.00 0.00 0.00 4.30
41 42 2.113139 CACACCAGCCCTTTCCGT 59.887 61.111 0.00 0.00 0.00 4.69
42 43 2.113139 ACACCAGCCCTTTCCGTG 59.887 61.111 0.00 0.00 0.00 4.94
43 44 2.113139 CACCAGCCCTTTCCGTGT 59.887 61.111 0.00 0.00 0.00 4.49
44 45 1.373435 CACCAGCCCTTTCCGTGTA 59.627 57.895 0.00 0.00 0.00 2.90
45 46 0.673644 CACCAGCCCTTTCCGTGTAG 60.674 60.000 0.00 0.00 0.00 2.74
46 47 1.125711 ACCAGCCCTTTCCGTGTAGT 61.126 55.000 0.00 0.00 0.00 2.73
47 48 0.673644 CCAGCCCTTTCCGTGTAGTG 60.674 60.000 0.00 0.00 0.00 2.74
48 49 0.320374 CAGCCCTTTCCGTGTAGTGA 59.680 55.000 0.00 0.00 0.00 3.41
49 50 1.053424 AGCCCTTTCCGTGTAGTGAA 58.947 50.000 0.00 0.00 0.00 3.18
50 51 1.418637 AGCCCTTTCCGTGTAGTGAAA 59.581 47.619 0.00 0.00 0.00 2.69
51 52 1.534163 GCCCTTTCCGTGTAGTGAAAC 59.466 52.381 0.00 0.00 0.00 2.78
52 53 1.796459 CCCTTTCCGTGTAGTGAAACG 59.204 52.381 0.00 0.00 45.86 3.60
56 57 3.152703 CGTGTAGTGAAACGGCCG 58.847 61.111 26.86 26.86 45.86 6.13
57 58 1.662446 CGTGTAGTGAAACGGCCGT 60.662 57.895 28.70 28.70 45.86 5.68
58 59 1.857364 GTGTAGTGAAACGGCCGTG 59.143 57.895 34.95 3.06 45.86 4.94
59 60 0.877213 GTGTAGTGAAACGGCCGTGT 60.877 55.000 34.95 29.73 45.86 4.49
60 61 0.876777 TGTAGTGAAACGGCCGTGTG 60.877 55.000 34.95 1.63 45.86 3.82
61 62 1.301087 TAGTGAAACGGCCGTGTGG 60.301 57.895 34.95 1.14 45.86 4.17
62 63 2.718747 TAGTGAAACGGCCGTGTGGG 62.719 60.000 34.95 0.21 45.86 4.61
86 87 3.284449 GGTGAACGCCCACACACC 61.284 66.667 9.52 0.00 44.23 4.16
87 88 2.515057 GTGAACGCCCACACACCA 60.515 61.111 3.27 0.00 37.04 4.17
88 89 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
89 90 2.110213 GAACGCCCACACACCAGA 59.890 61.111 0.00 0.00 0.00 3.86
90 91 2.203153 AACGCCCACACACCAGAC 60.203 61.111 0.00 0.00 0.00 3.51
91 92 3.767630 AACGCCCACACACCAGACC 62.768 63.158 0.00 0.00 0.00 3.85
92 93 4.248842 CGCCCACACACCAGACCA 62.249 66.667 0.00 0.00 0.00 4.02
93 94 2.281761 GCCCACACACCAGACCAG 60.282 66.667 0.00 0.00 0.00 4.00
94 95 3.120086 GCCCACACACCAGACCAGT 62.120 63.158 0.00 0.00 0.00 4.00
95 96 1.071471 CCCACACACCAGACCAGTC 59.929 63.158 0.00 0.00 0.00 3.51
96 97 1.071471 CCACACACCAGACCAGTCC 59.929 63.158 0.00 0.00 0.00 3.85
97 98 1.410850 CCACACACCAGACCAGTCCT 61.411 60.000 0.00 0.00 0.00 3.85
98 99 1.338107 CACACACCAGACCAGTCCTA 58.662 55.000 0.00 0.00 0.00 2.94
99 100 1.902508 CACACACCAGACCAGTCCTAT 59.097 52.381 0.00 0.00 0.00 2.57
100 101 1.902508 ACACACCAGACCAGTCCTATG 59.097 52.381 0.00 0.00 0.00 2.23
101 102 1.902508 CACACCAGACCAGTCCTATGT 59.097 52.381 0.00 0.00 0.00 2.29
102 103 1.902508 ACACCAGACCAGTCCTATGTG 59.097 52.381 0.00 0.49 0.00 3.21
103 104 1.208052 CACCAGACCAGTCCTATGTGG 59.792 57.143 2.41 2.41 39.98 4.17
104 105 0.179000 CCAGACCAGTCCTATGTGGC 59.821 60.000 0.00 0.00 37.34 5.01
105 106 0.904649 CAGACCAGTCCTATGTGGCA 59.095 55.000 0.00 0.00 37.34 4.92
106 107 0.905357 AGACCAGTCCTATGTGGCAC 59.095 55.000 11.55 11.55 37.34 5.01
107 108 0.905357 GACCAGTCCTATGTGGCACT 59.095 55.000 19.83 6.99 37.34 4.40
108 109 0.615331 ACCAGTCCTATGTGGCACTG 59.385 55.000 19.83 6.50 40.47 3.66
109 110 0.904649 CCAGTCCTATGTGGCACTGA 59.095 55.000 19.83 7.36 41.88 3.41
110 111 1.278985 CCAGTCCTATGTGGCACTGAA 59.721 52.381 19.83 0.00 41.88 3.02
111 112 2.290260 CCAGTCCTATGTGGCACTGAAA 60.290 50.000 19.83 0.00 41.88 2.69
112 113 3.411446 CAGTCCTATGTGGCACTGAAAA 58.589 45.455 19.83 0.00 41.88 2.29
113 114 3.189287 CAGTCCTATGTGGCACTGAAAAC 59.811 47.826 19.83 11.38 41.88 2.43
114 115 3.146066 GTCCTATGTGGCACTGAAAACA 58.854 45.455 19.83 0.00 35.26 2.83
115 116 3.758554 GTCCTATGTGGCACTGAAAACAT 59.241 43.478 19.83 4.46 37.11 2.71
116 117 3.758023 TCCTATGTGGCACTGAAAACATG 59.242 43.478 19.83 0.00 35.07 3.21
117 118 2.443887 ATGTGGCACTGAAAACATGC 57.556 45.000 19.83 0.00 38.68 4.06
122 123 2.798976 GCACTGAAAACATGCCAAGA 57.201 45.000 0.00 0.00 33.06 3.02
123 124 3.308438 GCACTGAAAACATGCCAAGAT 57.692 42.857 0.00 0.00 33.06 2.40
124 125 3.656559 GCACTGAAAACATGCCAAGATT 58.343 40.909 0.00 0.00 33.06 2.40
125 126 3.676646 GCACTGAAAACATGCCAAGATTC 59.323 43.478 0.00 0.00 33.06 2.52
126 127 3.916172 CACTGAAAACATGCCAAGATTCG 59.084 43.478 0.00 0.00 0.00 3.34
127 128 3.569701 ACTGAAAACATGCCAAGATTCGT 59.430 39.130 0.00 0.00 0.00 3.85
128 129 3.899734 TGAAAACATGCCAAGATTCGTG 58.100 40.909 0.00 0.00 0.00 4.35
129 130 2.352503 AAACATGCCAAGATTCGTGC 57.647 45.000 0.00 0.00 0.00 5.34
130 131 0.168788 AACATGCCAAGATTCGTGCG 59.831 50.000 0.00 0.00 0.00 5.34
131 132 1.584483 CATGCCAAGATTCGTGCGC 60.584 57.895 0.00 0.00 0.00 6.09
132 133 1.746615 ATGCCAAGATTCGTGCGCT 60.747 52.632 9.73 0.00 0.00 5.92
133 134 1.709147 ATGCCAAGATTCGTGCGCTC 61.709 55.000 9.73 3.51 0.00 5.03
134 135 2.390599 GCCAAGATTCGTGCGCTCA 61.391 57.895 9.73 0.00 0.00 4.26
135 136 1.421485 CCAAGATTCGTGCGCTCAC 59.579 57.895 9.73 0.00 39.78 3.51
143 144 2.167918 GTGCGCTCACGAACGAAC 59.832 61.111 9.73 0.00 38.28 3.95
144 145 3.391631 TGCGCTCACGAACGAACG 61.392 61.111 9.73 0.00 43.93 3.95
145 146 4.754818 GCGCTCACGAACGAACGC 62.755 66.667 0.00 6.68 43.93 4.84
146 147 4.449161 CGCTCACGAACGAACGCG 62.449 66.667 3.53 3.53 43.93 6.01
147 148 4.117372 GCTCACGAACGAACGCGG 62.117 66.667 12.47 0.00 43.17 6.46
148 149 2.427905 CTCACGAACGAACGCGGA 60.428 61.111 12.47 0.00 43.17 5.54
149 150 1.800315 CTCACGAACGAACGCGGAT 60.800 57.895 12.47 0.00 43.17 4.18
150 151 1.730593 CTCACGAACGAACGCGGATC 61.731 60.000 12.47 7.67 43.17 3.36
151 152 2.505557 ACGAACGAACGCGGATCC 60.506 61.111 12.47 0.00 43.17 3.36
152 153 2.505337 CGAACGAACGCGGATCCA 60.505 61.111 12.47 0.00 43.17 3.41
153 154 2.785105 CGAACGAACGCGGATCCAC 61.785 63.158 12.47 0.00 43.17 4.02
154 155 2.785105 GAACGAACGCGGATCCACG 61.785 63.158 20.32 20.32 43.17 4.94
179 180 2.265739 GCGAGATGCAGACACCCA 59.734 61.111 0.00 0.00 45.45 4.51
180 181 2.103042 GCGAGATGCAGACACCCAC 61.103 63.158 0.00 0.00 45.45 4.61
181 182 1.293179 CGAGATGCAGACACCCACA 59.707 57.895 0.00 0.00 0.00 4.17
182 183 1.016130 CGAGATGCAGACACCCACAC 61.016 60.000 0.00 0.00 0.00 3.82
183 184 0.035317 GAGATGCAGACACCCACACA 59.965 55.000 0.00 0.00 0.00 3.72
184 185 0.694771 AGATGCAGACACCCACACAT 59.305 50.000 0.00 0.00 0.00 3.21
185 186 0.806868 GATGCAGACACCCACACATG 59.193 55.000 0.00 0.00 0.00 3.21
186 187 0.111061 ATGCAGACACCCACACATGT 59.889 50.000 0.00 0.00 0.00 3.21
187 188 0.818852 TGCAGACACCCACACATGTG 60.819 55.000 24.25 24.25 45.23 3.21
196 197 3.765349 CACACATGTGGGCGTTAAC 57.235 52.632 28.64 0.00 42.10 2.01
197 198 0.947960 CACACATGTGGGCGTTAACA 59.052 50.000 28.64 0.00 42.10 2.41
198 199 1.539388 CACACATGTGGGCGTTAACAT 59.461 47.619 28.64 1.52 42.10 2.71
199 200 2.030363 CACACATGTGGGCGTTAACATT 60.030 45.455 28.64 0.98 42.10 2.71
200 201 2.625790 ACACATGTGGGCGTTAACATTT 59.374 40.909 28.64 0.77 34.81 2.32
201 202 3.068873 ACACATGTGGGCGTTAACATTTT 59.931 39.130 28.64 0.31 34.81 1.82
202 203 3.672867 CACATGTGGGCGTTAACATTTTC 59.327 43.478 18.51 0.00 34.81 2.29
203 204 3.319405 ACATGTGGGCGTTAACATTTTCA 59.681 39.130 6.39 0.00 34.81 2.69
204 205 3.634568 TGTGGGCGTTAACATTTTCAG 57.365 42.857 6.39 0.00 0.00 3.02
205 206 2.287909 TGTGGGCGTTAACATTTTCAGC 60.288 45.455 6.39 0.00 0.00 4.26
206 207 1.271102 TGGGCGTTAACATTTTCAGCC 59.729 47.619 6.39 8.04 42.10 4.85
207 208 1.990799 GGCGTTAACATTTTCAGCCC 58.009 50.000 6.39 0.00 37.32 5.19
208 209 1.271102 GGCGTTAACATTTTCAGCCCA 59.729 47.619 6.39 0.00 37.32 5.36
209 210 2.288518 GGCGTTAACATTTTCAGCCCAA 60.289 45.455 6.39 0.00 37.32 4.12
210 211 3.385577 GCGTTAACATTTTCAGCCCAAA 58.614 40.909 6.39 0.00 0.00 3.28
211 212 3.183574 GCGTTAACATTTTCAGCCCAAAC 59.816 43.478 6.39 0.00 0.00 2.93
212 213 3.738791 CGTTAACATTTTCAGCCCAAACC 59.261 43.478 6.39 0.00 0.00 3.27
213 214 2.524569 AACATTTTCAGCCCAAACCG 57.475 45.000 0.00 0.00 0.00 4.44
214 215 0.678950 ACATTTTCAGCCCAAACCGG 59.321 50.000 0.00 0.00 0.00 5.28
236 237 3.881089 GGAAGAAACAACCGAAAAGAGGA 59.119 43.478 0.00 0.00 0.00 3.71
240 241 5.647589 AGAAACAACCGAAAAGAGGAAAAC 58.352 37.500 0.00 0.00 0.00 2.43
241 242 5.184287 AGAAACAACCGAAAAGAGGAAAACA 59.816 36.000 0.00 0.00 0.00 2.83
265 266 1.819288 ACAGGAGATTGTGACGTCGAT 59.181 47.619 11.62 4.82 0.00 3.59
273 274 3.313012 TTGTGACGTCGATCTCCAAAT 57.687 42.857 11.62 0.00 0.00 2.32
278 279 3.235195 GACGTCGATCTCCAAATATCCG 58.765 50.000 0.00 0.00 0.00 4.18
292 293 0.968901 TATCCGTCGGCACCTTCAGT 60.969 55.000 6.34 0.00 0.00 3.41
305 306 1.630369 CCTTCAGTTGTCCCCATCAGA 59.370 52.381 0.00 0.00 0.00 3.27
310 311 0.615331 GTTGTCCCCATCAGAGCTGA 59.385 55.000 2.23 2.23 44.59 4.26
390 391 0.387929 TGGCATAGTAGTACGCCTGC 59.612 55.000 15.32 14.51 45.13 4.85
411 412 3.755378 GCTGGCATATATTTGGTGGAGAG 59.245 47.826 0.00 0.00 0.00 3.20
412 413 4.505566 GCTGGCATATATTTGGTGGAGAGA 60.506 45.833 0.00 0.00 0.00 3.10
413 414 5.233083 TGGCATATATTTGGTGGAGAGAG 57.767 43.478 0.00 0.00 0.00 3.20
414 415 4.907269 TGGCATATATTTGGTGGAGAGAGA 59.093 41.667 0.00 0.00 0.00 3.10
415 416 5.012458 TGGCATATATTTGGTGGAGAGAGAG 59.988 44.000 0.00 0.00 0.00 3.20
416 417 5.247110 GGCATATATTTGGTGGAGAGAGAGA 59.753 44.000 0.00 0.00 0.00 3.10
417 418 6.397272 GCATATATTTGGTGGAGAGAGAGAG 58.603 44.000 0.00 0.00 0.00 3.20
423 424 2.505407 TGGTGGAGAGAGAGAGAGAGAG 59.495 54.545 0.00 0.00 0.00 3.20
424 425 2.565841 GTGGAGAGAGAGAGAGAGAGC 58.434 57.143 0.00 0.00 0.00 4.09
430 431 1.414181 AGAGAGAGAGAGAGCGAGGAG 59.586 57.143 0.00 0.00 0.00 3.69
442 443 1.745890 CGAGGAGTCCACAACACCA 59.254 57.895 12.86 0.00 40.80 4.17
447 448 2.443255 AGGAGTCCACAACACCATTTCT 59.557 45.455 12.86 0.00 40.80 2.52
448 449 3.117512 AGGAGTCCACAACACCATTTCTT 60.118 43.478 12.86 0.00 40.80 2.52
461 474 5.012354 ACACCATTTCTTTGAATTGGCAGAT 59.988 36.000 16.44 0.93 0.00 2.90
463 476 6.532657 CACCATTTCTTTGAATTGGCAGATAC 59.467 38.462 16.44 0.00 0.00 2.24
464 477 6.438425 ACCATTTCTTTGAATTGGCAGATACT 59.562 34.615 16.44 0.00 0.00 2.12
466 479 8.133627 CCATTTCTTTGAATTGGCAGATACTAG 58.866 37.037 7.87 0.00 0.00 2.57
467 480 8.896744 CATTTCTTTGAATTGGCAGATACTAGA 58.103 33.333 0.00 0.00 0.00 2.43
468 481 8.862325 TTTCTTTGAATTGGCAGATACTAGAA 57.138 30.769 0.00 0.00 0.00 2.10
469 482 8.862325 TTCTTTGAATTGGCAGATACTAGAAA 57.138 30.769 0.00 0.00 0.00 2.52
470 483 8.268850 TCTTTGAATTGGCAGATACTAGAAAC 57.731 34.615 0.00 0.00 0.00 2.78
471 484 7.882791 TCTTTGAATTGGCAGATACTAGAAACA 59.117 33.333 0.00 0.00 0.00 2.83
472 485 8.579850 TTTGAATTGGCAGATACTAGAAACAT 57.420 30.769 0.00 0.00 0.00 2.71
473 486 7.558161 TGAATTGGCAGATACTAGAAACATG 57.442 36.000 0.00 0.00 0.00 3.21
474 487 7.112122 TGAATTGGCAGATACTAGAAACATGT 58.888 34.615 0.00 0.00 0.00 3.21
477 490 6.985188 TGGCAGATACTAGAAACATGTTTC 57.015 37.500 34.21 34.21 46.85 2.78
491 504 8.807667 GAAACATGTTTCTCTTGAACATGATT 57.192 30.769 33.99 22.91 44.03 2.57
492 505 8.807667 AAACATGTTTCTCTTGAACATGATTC 57.192 30.769 27.14 0.12 40.24 2.52
493 506 7.756395 ACATGTTTCTCTTGAACATGATTCT 57.244 32.000 27.14 9.78 40.24 2.40
494 507 8.174733 ACATGTTTCTCTTGAACATGATTCTT 57.825 30.769 27.14 9.49 40.24 2.52
495 508 8.080417 ACATGTTTCTCTTGAACATGATTCTTG 58.920 33.333 27.14 9.06 40.24 3.02
497 510 8.675705 TGTTTCTCTTGAACATGATTCTTGTA 57.324 30.769 0.00 0.00 31.02 2.41
498 511 8.777413 TGTTTCTCTTGAACATGATTCTTGTAG 58.223 33.333 0.00 1.25 31.02 2.74
501 514 7.670364 TCTCTTGAACATGATTCTTGTAGTCA 58.330 34.615 0.00 4.74 0.00 3.41
502 515 7.816513 TCTCTTGAACATGATTCTTGTAGTCAG 59.183 37.037 0.00 1.77 0.00 3.51
503 516 7.445121 TCTTGAACATGATTCTTGTAGTCAGT 58.555 34.615 0.00 0.00 0.00 3.41
519 535 3.053619 AGTCAGTGGGGAACTTTCAGTTT 60.054 43.478 0.00 0.00 38.80 2.66
522 538 3.565902 CAGTGGGGAACTTTCAGTTTCTC 59.434 47.826 0.00 0.00 38.80 2.87
525 541 4.755629 GTGGGGAACTTTCAGTTTCTCTAC 59.244 45.833 0.00 0.00 38.80 2.59
529 545 6.056236 GGGAACTTTCAGTTTCTCTACAACT 58.944 40.000 0.00 0.00 38.80 3.16
560 582 4.481368 AATAACCAAGTGGCGAGTATGA 57.519 40.909 0.00 0.00 39.32 2.15
563 585 4.481368 AACCAAGTGGCGAGTATGAATA 57.519 40.909 0.00 0.00 39.32 1.75
565 587 4.632153 ACCAAGTGGCGAGTATGAATATC 58.368 43.478 0.00 0.00 39.32 1.63
566 588 3.997021 CCAAGTGGCGAGTATGAATATCC 59.003 47.826 0.00 0.00 0.00 2.59
567 589 4.503123 CCAAGTGGCGAGTATGAATATCCA 60.503 45.833 0.00 0.00 0.00 3.41
569 591 4.152647 AGTGGCGAGTATGAATATCCAGA 58.847 43.478 0.00 0.00 0.00 3.86
570 592 4.774726 AGTGGCGAGTATGAATATCCAGAT 59.225 41.667 0.00 0.00 0.00 2.90
571 593 5.247110 AGTGGCGAGTATGAATATCCAGATT 59.753 40.000 0.00 0.00 0.00 2.40
572 594 6.437477 AGTGGCGAGTATGAATATCCAGATTA 59.563 38.462 0.00 0.00 0.00 1.75
573 595 6.531948 GTGGCGAGTATGAATATCCAGATTAC 59.468 42.308 0.00 0.00 0.00 1.89
574 596 6.210584 TGGCGAGTATGAATATCCAGATTACA 59.789 38.462 0.00 0.00 0.00 2.41
575 597 7.097192 GGCGAGTATGAATATCCAGATTACAA 58.903 38.462 0.00 0.00 0.00 2.41
576 598 7.276658 GGCGAGTATGAATATCCAGATTACAAG 59.723 40.741 0.00 0.00 0.00 3.16
577 599 7.815068 GCGAGTATGAATATCCAGATTACAAGT 59.185 37.037 0.00 0.00 0.00 3.16
578 600 9.698309 CGAGTATGAATATCCAGATTACAAGTT 57.302 33.333 0.00 0.00 0.00 2.66
587 636 7.872113 ATCCAGATTACAAGTTCAGAAATCC 57.128 36.000 0.00 0.00 0.00 3.01
597 646 4.718961 AGTTCAGAAATCCATAATCCCCG 58.281 43.478 0.00 0.00 0.00 5.73
622 671 5.909621 AGGAAATCATGACATTTGTCCAG 57.090 39.130 0.00 1.42 44.15 3.86
623 672 5.573219 AGGAAATCATGACATTTGTCCAGA 58.427 37.500 0.00 6.47 44.15 3.86
624 673 6.192773 AGGAAATCATGACATTTGTCCAGAT 58.807 36.000 0.00 8.28 44.15 2.90
625 674 6.666546 AGGAAATCATGACATTTGTCCAGATT 59.333 34.615 15.92 15.92 43.21 2.40
626 675 7.835682 AGGAAATCATGACATTTGTCCAGATTA 59.164 33.333 19.32 0.32 41.91 1.75
627 676 7.917505 GGAAATCATGACATTTGTCCAGATTAC 59.082 37.037 19.32 14.56 41.91 1.89
628 677 7.943079 AATCATGACATTTGTCCAGATTACA 57.057 32.000 18.33 0.00 44.15 2.41
629 678 7.943079 ATCATGACATTTGTCCAGATTACAA 57.057 32.000 0.00 0.00 44.15 2.41
631 680 7.592938 TCATGACATTTGTCCAGATTACAAAC 58.407 34.615 8.16 0.00 46.40 2.93
632 681 6.951062 TGACATTTGTCCAGATTACAAACA 57.049 33.333 8.16 0.00 46.40 2.83
633 682 7.340122 TGACATTTGTCCAGATTACAAACAA 57.660 32.000 8.16 0.00 46.40 2.83
634 683 7.776107 TGACATTTGTCCAGATTACAAACAAA 58.224 30.769 8.16 0.00 46.40 2.83
635 684 7.704472 TGACATTTGTCCAGATTACAAACAAAC 59.296 33.333 8.16 0.00 46.40 2.93
636 685 7.781056 ACATTTGTCCAGATTACAAACAAACT 58.219 30.769 3.72 0.00 46.40 2.66
637 686 8.257306 ACATTTGTCCAGATTACAAACAAACTT 58.743 29.630 3.72 0.00 46.40 2.66
638 687 8.542132 CATTTGTCCAGATTACAAACAAACTTG 58.458 33.333 3.72 0.00 46.40 3.16
639 688 5.587289 TGTCCAGATTACAAACAAACTTGC 58.413 37.500 0.00 0.00 0.00 4.01
640 689 5.126222 TGTCCAGATTACAAACAAACTTGCA 59.874 36.000 0.00 0.00 0.00 4.08
641 690 5.687285 GTCCAGATTACAAACAAACTTGCAG 59.313 40.000 0.00 0.00 0.00 4.41
642 691 4.445385 CCAGATTACAAACAAACTTGCAGC 59.555 41.667 0.00 0.00 0.00 5.25
643 692 5.284079 CAGATTACAAACAAACTTGCAGCT 58.716 37.500 0.00 0.00 0.00 4.24
644 693 5.400485 CAGATTACAAACAAACTTGCAGCTC 59.600 40.000 0.00 0.00 0.00 4.09
649 698 2.763249 ACAAACTTGCAGCTCGAAAG 57.237 45.000 0.00 3.19 0.00 2.62
669 718 9.817809 TCGAAAGCATCTTGTAGATTTTATACT 57.182 29.630 0.00 0.00 31.32 2.12
735 810 4.425487 AGAAAGAATCTTTGCAGGAGGCG 61.425 47.826 13.55 0.00 39.84 5.52
792 867 2.361104 GTGGGCGCCCTCAATCAA 60.361 61.111 43.34 21.57 36.94 2.57
793 868 1.754234 GTGGGCGCCCTCAATCAAT 60.754 57.895 43.34 0.00 36.94 2.57
794 869 1.453745 TGGGCGCCCTCAATCAATC 60.454 57.895 43.34 15.94 36.94 2.67
795 870 1.453745 GGGCGCCCTCAATCAATCA 60.454 57.895 38.76 0.00 0.00 2.57
816 891 0.374758 GCACACATGCCATGTACGAG 59.625 55.000 10.53 0.43 46.97 4.18
817 892 1.725641 CACACATGCCATGTACGAGT 58.274 50.000 10.53 1.11 42.70 4.18
818 893 2.887337 CACACATGCCATGTACGAGTA 58.113 47.619 10.53 0.00 42.70 2.59
867 942 2.347490 GCCGACAAGAGAAGGCCA 59.653 61.111 5.01 0.00 43.54 5.36
873 948 1.303643 CAAGAGAAGGCCACCACCC 60.304 63.158 5.01 0.00 0.00 4.61
915 990 1.827399 TTCCTGCGTCTCCCCACTTC 61.827 60.000 0.00 0.00 0.00 3.01
934 1009 1.856265 CTCCTTCCAAACAGCGGTGC 61.856 60.000 15.82 0.00 0.00 5.01
936 1011 1.898574 CTTCCAAACAGCGGTGCCT 60.899 57.895 15.82 0.00 0.00 4.75
937 1012 1.856265 CTTCCAAACAGCGGTGCCTC 61.856 60.000 15.82 0.00 0.00 4.70
938 1013 3.365265 CCAAACAGCGGTGCCTCC 61.365 66.667 15.82 0.00 0.00 4.30
939 1014 2.594303 CAAACAGCGGTGCCTCCA 60.594 61.111 15.82 0.00 35.57 3.86
948 1023 3.884774 GTGCCTCCACCACCACCA 61.885 66.667 0.00 0.00 35.92 4.17
979 1054 2.118404 AAGAGCCGAGCGAGGAGAG 61.118 63.158 4.64 0.00 0.00 3.20
989 1064 0.106918 GCGAGGAGAGGAGAGGAGAA 60.107 60.000 0.00 0.00 0.00 2.87
992 1067 2.745152 CGAGGAGAGGAGAGGAGAAGAC 60.745 59.091 0.00 0.00 0.00 3.01
1198 1273 2.740826 CCCGTGCGTACCAACCAG 60.741 66.667 0.00 0.00 0.00 4.00
1205 1280 0.108756 GCGTACCAACCAGACTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
1207 1282 1.891450 CGTACCAACCAGACTCCTCCT 60.891 57.143 0.00 0.00 0.00 3.69
1208 1283 2.619849 CGTACCAACCAGACTCCTCCTA 60.620 54.545 0.00 0.00 0.00 2.94
1249 1325 1.140407 GCTCTTGCTACTGTACCGCG 61.140 60.000 0.00 0.00 36.03 6.46
1250 1326 0.525668 CTCTTGCTACTGTACCGCGG 60.526 60.000 26.86 26.86 0.00 6.46
1252 1328 2.829043 CTTGCTACTGTACCGCGGCA 62.829 60.000 28.58 15.78 0.00 5.69
1253 1329 2.582498 GCTACTGTACCGCGGCAG 60.582 66.667 28.58 26.69 38.58 4.85
1254 1330 2.882876 CTACTGTACCGCGGCAGT 59.117 61.111 31.86 31.86 46.33 4.40
1256 1332 0.452987 CTACTGTACCGCGGCAGTTA 59.547 55.000 33.53 21.35 42.61 2.24
1257 1333 1.066605 CTACTGTACCGCGGCAGTTAT 59.933 52.381 33.53 17.84 42.61 1.89
1258 1334 1.105457 ACTGTACCGCGGCAGTTATA 58.895 50.000 26.64 9.47 42.61 0.98
1259 1335 1.684983 ACTGTACCGCGGCAGTTATAT 59.315 47.619 26.64 9.04 42.61 0.86
1260 1336 2.886523 ACTGTACCGCGGCAGTTATATA 59.113 45.455 26.64 8.05 42.61 0.86
1261 1337 3.240069 CTGTACCGCGGCAGTTATATAC 58.760 50.000 28.58 17.72 0.00 1.47
1262 1338 2.886523 TGTACCGCGGCAGTTATATACT 59.113 45.455 28.58 2.85 37.68 2.12
1263 1339 2.719426 ACCGCGGCAGTTATATACTC 57.281 50.000 28.58 0.00 33.85 2.59
1267 1343 3.439476 CCGCGGCAGTTATATACTCTACT 59.561 47.826 14.67 0.00 33.85 2.57
1272 1348 6.294065 GCGGCAGTTATATACTCTACTTGTCT 60.294 42.308 0.00 0.00 33.85 3.41
1285 1361 0.887836 CTTGTCTGCCTGCTTGCTGA 60.888 55.000 1.05 4.07 36.94 4.26
1303 1379 7.606858 TTGCTGATCTTGATCTTAGTTTCTG 57.393 36.000 11.31 0.70 0.00 3.02
1327 1403 2.045340 CCCACCAATCACCCCGAC 60.045 66.667 0.00 0.00 0.00 4.79
1345 1422 0.828022 ACCCGTGCAAGATTCCGATA 59.172 50.000 0.00 0.00 0.00 2.92
1466 1546 1.142870 TGGTCTGCCTTTTGCTGTACT 59.857 47.619 0.00 0.00 42.00 2.73
1467 1547 2.370519 TGGTCTGCCTTTTGCTGTACTA 59.629 45.455 0.00 0.00 42.00 1.82
1484 1564 0.528901 CTAGAGCAGAGCAGCAGCAG 60.529 60.000 3.17 0.00 45.49 4.24
1485 1565 2.575125 TAGAGCAGAGCAGCAGCAGC 62.575 60.000 3.17 0.46 45.49 5.25
1486 1566 4.331067 AGCAGAGCAGCAGCAGCA 62.331 61.111 12.92 0.00 45.49 4.41
1520 1600 5.237779 TCTGGTCGTAGAATTTGTTTTGACC 59.762 40.000 1.25 1.25 43.78 4.02
1528 1608 7.480542 CGTAGAATTTGTTTTGACCGGATTTAG 59.519 37.037 9.46 0.00 0.00 1.85
1531 1611 5.699097 TTTGTTTTGACCGGATTTAGGAG 57.301 39.130 9.46 0.00 0.00 3.69
1536 1616 0.693430 GACCGGATTTAGGAGGGGGT 60.693 60.000 9.46 0.00 0.00 4.95
1596 1676 0.447801 GCAACCGATGTTCGCTCATT 59.552 50.000 0.00 0.00 38.82 2.57
1609 1689 1.367659 GCTCATTCTGCTCTGTCCAC 58.632 55.000 0.00 0.00 0.00 4.02
1610 1690 1.638133 CTCATTCTGCTCTGTCCACG 58.362 55.000 0.00 0.00 0.00 4.94
1644 1724 2.029290 GTGTCGCTTTAACTCTGGGAGA 60.029 50.000 1.31 0.00 33.32 3.71
1668 1748 2.457778 GCGGCGCAGATTTCGGTTA 61.458 57.895 29.21 0.00 0.00 2.85
1672 1752 1.366111 GCGCAGATTTCGGTTAGCCA 61.366 55.000 0.30 0.00 34.09 4.75
1721 1801 7.497249 CCTAACTCTGGATCTAACCATTTCTTG 59.503 40.741 0.00 0.00 39.34 3.02
1759 1904 6.477688 GCAAATTCAATTACACAGGGATCATG 59.522 38.462 0.00 0.00 0.00 3.07
1760 1905 7.631161 GCAAATTCAATTACACAGGGATCATGA 60.631 37.037 0.00 0.00 0.00 3.07
1761 1906 8.418662 CAAATTCAATTACACAGGGATCATGAT 58.581 33.333 8.25 8.25 0.00 2.45
1762 1907 8.543293 AATTCAATTACACAGGGATCATGATT 57.457 30.769 10.14 0.00 0.00 2.57
1763 1908 6.947644 TCAATTACACAGGGATCATGATTG 57.052 37.500 10.14 6.98 0.00 2.67
1764 1909 5.300034 TCAATTACACAGGGATCATGATTGC 59.700 40.000 10.14 0.00 0.00 3.56
1767 1912 2.240414 ACACAGGGATCATGATTGCTGA 59.760 45.455 10.14 0.00 0.00 4.26
1769 1914 3.889538 CACAGGGATCATGATTGCTGATT 59.110 43.478 10.14 0.00 33.56 2.57
1770 1915 3.889538 ACAGGGATCATGATTGCTGATTG 59.110 43.478 10.14 4.99 33.56 2.67
1771 1916 3.889538 CAGGGATCATGATTGCTGATTGT 59.110 43.478 10.14 0.00 33.56 2.71
1791 2301 3.075148 GTCATCCATCAGCTCATCCATG 58.925 50.000 0.00 0.00 0.00 3.66
1792 2302 2.039879 TCATCCATCAGCTCATCCATGG 59.960 50.000 4.97 4.97 37.70 3.66
1794 2304 1.848388 TCCATCAGCTCATCCATGGTT 59.152 47.619 12.58 0.00 37.62 3.67
1795 2305 2.158711 TCCATCAGCTCATCCATGGTTC 60.159 50.000 12.58 0.00 37.62 3.62
1797 2307 2.704464 TCAGCTCATCCATGGTTCTG 57.296 50.000 12.58 12.24 0.00 3.02
1798 2308 1.911357 TCAGCTCATCCATGGTTCTGT 59.089 47.619 12.58 0.00 0.00 3.41
1799 2309 3.106827 TCAGCTCATCCATGGTTCTGTA 58.893 45.455 12.58 0.00 0.00 2.74
1800 2310 3.133542 TCAGCTCATCCATGGTTCTGTAG 59.866 47.826 12.58 8.59 0.00 2.74
1801 2311 3.110705 AGCTCATCCATGGTTCTGTAGT 58.889 45.455 12.58 0.00 0.00 2.73
1802 2312 3.521126 AGCTCATCCATGGTTCTGTAGTT 59.479 43.478 12.58 3.93 0.00 2.24
1803 2313 4.716784 AGCTCATCCATGGTTCTGTAGTTA 59.283 41.667 12.58 0.00 0.00 2.24
1804 2314 5.053145 GCTCATCCATGGTTCTGTAGTTAG 58.947 45.833 12.58 2.99 0.00 2.34
1805 2315 5.023533 TCATCCATGGTTCTGTAGTTAGC 57.976 43.478 12.58 0.00 0.00 3.09
1811 2321 6.265649 TCCATGGTTCTGTAGTTAGCTAGATC 59.734 42.308 12.58 0.00 0.00 2.75
1826 2336 5.295950 AGCTAGATCATGTTACATGTGCTC 58.704 41.667 22.58 17.20 0.00 4.26
1829 2339 6.128607 GCTAGATCATGTTACATGTGCTCATC 60.129 42.308 22.58 17.23 31.15 2.92
1836 2346 0.738975 ACATGTGCTCATCTGCATGC 59.261 50.000 11.82 11.82 45.23 4.06
1837 2347 1.025041 CATGTGCTCATCTGCATGCT 58.975 50.000 20.33 0.00 45.23 3.79
1881 2391 5.965334 CAGTGTTAAATATGGACGCATCAAC 59.035 40.000 0.00 0.00 0.00 3.18
1885 2395 4.536364 AAATATGGACGCATCAACGAAG 57.464 40.909 0.00 0.00 36.70 3.79
1893 2403 5.062934 TGGACGCATCAACGAAGTAAATTAG 59.937 40.000 0.00 0.00 45.00 1.73
1894 2404 4.893795 ACGCATCAACGAAGTAAATTAGC 58.106 39.130 0.00 0.00 45.00 3.09
1895 2405 4.630069 ACGCATCAACGAAGTAAATTAGCT 59.370 37.500 0.00 0.00 45.00 3.32
1899 2409 6.466097 GCATCAACGAAGTAAATTAGCTGTTC 59.534 38.462 0.00 0.00 45.00 3.18
1904 2432 6.831769 ACGAAGTAAATTAGCTGTTCATGTG 58.168 36.000 0.00 0.00 41.94 3.21
1932 2460 4.581409 TGAATGGCATGTGTGATATTCCTG 59.419 41.667 0.00 0.00 32.66 3.86
1935 2463 2.880890 GGCATGTGTGATATTCCTGGTC 59.119 50.000 0.00 0.00 0.00 4.02
1953 2481 2.415893 GGTCCATGCAGTTTACATGTGC 60.416 50.000 9.11 3.16 42.74 4.57
2028 2556 1.518133 GCCTACTGCTCAGTGCTCG 60.518 63.158 12.43 0.00 42.52 5.03
2037 2565 0.522286 CTCAGTGCTCGCTGTACTCG 60.522 60.000 9.88 0.00 39.61 4.18
2148 2676 1.949525 ACACTTGACATGCTCAACACC 59.050 47.619 6.62 0.00 33.65 4.16
2235 2765 5.240623 ACACATTTGCTTAACAAGATTCCGA 59.759 36.000 0.00 0.00 40.06 4.55
2259 2789 1.327303 TCATTTTTCGGCAGGTTGCT 58.673 45.000 0.67 0.00 44.28 3.91
2333 2863 0.668535 CATGACATGCCCATCAGCTG 59.331 55.000 7.63 7.63 0.00 4.24
2392 2922 1.228003 TTGCGACCACCGACCAAAT 60.228 52.632 0.00 0.00 41.76 2.32
2393 2923 0.820074 TTGCGACCACCGACCAAATT 60.820 50.000 0.00 0.00 41.76 1.82
2406 2936 3.058224 CGACCAAATTGACCTCCAAACTC 60.058 47.826 0.00 0.00 38.43 3.01
2754 3285 4.763793 ACATTTGTGTGCTTATCTTCAGCT 59.236 37.500 0.00 0.00 38.19 4.24
2765 3296 5.392380 GCTTATCTTCAGCTTAGCTTTTGCA 60.392 40.000 3.00 0.00 40.14 4.08
2843 3374 9.534565 TTCTAGAGTCTGAATAAAATGGATTCG 57.465 33.333 1.86 0.00 36.30 3.34
2844 3375 8.914011 TCTAGAGTCTGAATAAAATGGATTCGA 58.086 33.333 1.86 0.00 36.30 3.71
2845 3376 9.703892 CTAGAGTCTGAATAAAATGGATTCGAT 57.296 33.333 1.86 0.00 36.30 3.59
2847 3378 9.050601 AGAGTCTGAATAAAATGGATTCGATTC 57.949 33.333 0.00 0.00 36.30 2.52
2848 3379 8.970859 AGTCTGAATAAAATGGATTCGATTCT 57.029 30.769 7.21 0.00 36.30 2.40
2849 3380 8.834465 AGTCTGAATAAAATGGATTCGATTCTG 58.166 33.333 7.21 0.00 36.30 3.02
2850 3381 7.589221 GTCTGAATAAAATGGATTCGATTCTGC 59.411 37.037 7.21 0.00 36.30 4.26
2851 3382 7.500227 TCTGAATAAAATGGATTCGATTCTGCT 59.500 33.333 7.21 0.00 36.30 4.24
2852 3383 7.420002 TGAATAAAATGGATTCGATTCTGCTG 58.580 34.615 7.21 0.00 36.30 4.41
2853 3384 6.949352 ATAAAATGGATTCGATTCTGCTGT 57.051 33.333 7.21 0.00 0.00 4.40
2854 3385 5.649782 AAAATGGATTCGATTCTGCTGTT 57.350 34.783 7.21 0.00 0.00 3.16
2855 3386 5.649782 AAATGGATTCGATTCTGCTGTTT 57.350 34.783 7.21 0.71 0.00 2.83
2856 3387 4.889832 ATGGATTCGATTCTGCTGTTTC 57.110 40.909 7.21 0.00 0.00 2.78
2857 3388 3.942829 TGGATTCGATTCTGCTGTTTCT 58.057 40.909 7.21 0.00 0.00 2.52
2858 3389 4.326826 TGGATTCGATTCTGCTGTTTCTT 58.673 39.130 7.21 0.00 0.00 2.52
2859 3390 4.761739 TGGATTCGATTCTGCTGTTTCTTT 59.238 37.500 7.21 0.00 0.00 2.52
2860 3391 5.241506 TGGATTCGATTCTGCTGTTTCTTTT 59.758 36.000 7.21 0.00 0.00 2.27
2861 3392 6.152379 GGATTCGATTCTGCTGTTTCTTTTT 58.848 36.000 7.21 0.00 0.00 1.94
2862 3393 7.040755 TGGATTCGATTCTGCTGTTTCTTTTTA 60.041 33.333 7.21 0.00 0.00 1.52
2863 3394 7.271438 GGATTCGATTCTGCTGTTTCTTTTTAC 59.729 37.037 7.21 0.00 0.00 2.01
2864 3395 5.675970 TCGATTCTGCTGTTTCTTTTTACG 58.324 37.500 0.00 0.00 0.00 3.18
2865 3396 5.464057 TCGATTCTGCTGTTTCTTTTTACGA 59.536 36.000 0.00 0.00 0.00 3.43
2866 3397 6.147164 TCGATTCTGCTGTTTCTTTTTACGAT 59.853 34.615 0.00 0.00 0.00 3.73
2867 3398 6.247165 CGATTCTGCTGTTTCTTTTTACGATG 59.753 38.462 0.00 0.00 0.00 3.84
2868 3399 5.356882 TCTGCTGTTTCTTTTTACGATGG 57.643 39.130 0.00 0.00 0.00 3.51
2869 3400 5.060506 TCTGCTGTTTCTTTTTACGATGGA 58.939 37.500 0.00 0.00 0.00 3.41
2870 3401 5.049680 TCTGCTGTTTCTTTTTACGATGGAC 60.050 40.000 0.00 0.00 0.00 4.02
2871 3402 4.576873 TGCTGTTTCTTTTTACGATGGACA 59.423 37.500 0.00 0.00 0.00 4.02
2872 3403 5.147162 GCTGTTTCTTTTTACGATGGACAG 58.853 41.667 0.00 0.00 36.11 3.51
2873 3404 5.103290 TGTTTCTTTTTACGATGGACAGC 57.897 39.130 0.00 0.00 0.00 4.40
2874 3405 4.023536 TGTTTCTTTTTACGATGGACAGCC 60.024 41.667 0.00 0.00 0.00 4.85
2883 3414 4.950200 TGGACAGCCATTTTGCCT 57.050 50.000 0.00 0.00 39.92 4.75
2884 3415 2.353858 TGGACAGCCATTTTGCCTG 58.646 52.632 0.00 0.00 39.92 4.85
2885 3416 1.186917 TGGACAGCCATTTTGCCTGG 61.187 55.000 0.00 0.00 39.92 4.45
2886 3417 1.593265 GACAGCCATTTTGCCTGGG 59.407 57.895 0.00 0.00 34.16 4.45
2887 3418 2.266689 CAGCCATTTTGCCTGGGC 59.733 61.111 4.43 4.43 46.77 5.36
2889 3420 4.032653 GCCATTTTGCCTGGGCTA 57.967 55.556 13.05 2.16 43.09 3.93
2890 3421 1.818555 GCCATTTTGCCTGGGCTAG 59.181 57.895 13.05 0.00 43.09 3.42
2891 3422 1.818555 CCATTTTGCCTGGGCTAGC 59.181 57.895 6.04 6.04 42.51 3.42
2892 3423 0.971959 CCATTTTGCCTGGGCTAGCA 60.972 55.000 18.24 0.00 42.51 3.49
2893 3424 0.896923 CATTTTGCCTGGGCTAGCAA 59.103 50.000 18.24 2.83 46.74 3.91
2896 3427 2.886382 TTGCCTGGGCTAGCAATTC 58.114 52.632 18.24 3.42 43.74 2.17
2897 3428 0.684153 TTGCCTGGGCTAGCAATTCC 60.684 55.000 18.24 8.98 43.74 3.01
2898 3429 2.189499 GCCTGGGCTAGCAATTCCG 61.189 63.158 18.24 5.05 38.26 4.30
2899 3430 1.526887 CCTGGGCTAGCAATTCCGA 59.473 57.895 18.24 0.00 0.00 4.55
2900 3431 0.533755 CCTGGGCTAGCAATTCCGAG 60.534 60.000 18.24 5.05 0.00 4.63
2921 3456 3.455910 AGGTCCATTGCAGATGCTAGTTA 59.544 43.478 6.35 0.00 42.66 2.24
2926 3461 6.538742 GTCCATTGCAGATGCTAGTTACTTTA 59.461 38.462 6.35 0.00 42.66 1.85
2931 3466 5.351465 TGCAGATGCTAGTTACTTTAAGCAC 59.649 40.000 10.07 5.60 46.84 4.40
2933 3468 6.456181 GCAGATGCTAGTTACTTTAAGCACTG 60.456 42.308 20.62 20.62 46.84 3.66
2934 3469 6.036517 CAGATGCTAGTTACTTTAAGCACTGG 59.963 42.308 18.95 5.97 46.84 4.00
2940 3475 7.172703 GCTAGTTACTTTAAGCACTGGAAGAAA 59.827 37.037 10.90 0.00 37.43 2.52
2965 3500 4.808895 GTCACATTACGGTTGCATCTGATA 59.191 41.667 10.60 0.00 0.00 2.15
2968 3503 4.141711 ACATTACGGTTGCATCTGATACCT 60.142 41.667 10.60 0.00 0.00 3.08
2971 3506 2.236146 ACGGTTGCATCTGATACCTCAA 59.764 45.455 10.60 0.03 0.00 3.02
2987 3522 8.828751 TGATACCTCAATGGATCATGATGATAA 58.171 33.333 14.30 0.25 37.20 1.75
2991 3526 8.391699 ACCTCAATGGATCATGATGATAAATCT 58.608 33.333 14.30 0.00 37.20 2.40
3007 3542 9.772973 ATGATAAATCTTACTGGCGTTTGTATA 57.227 29.630 0.00 0.00 0.00 1.47
3013 3548 5.522460 TCTTACTGGCGTTTGTATATGCTTC 59.478 40.000 0.00 0.00 0.00 3.86
3033 3569 6.032717 GCTTCAAGCAAGATCAAATAGGAAC 58.967 40.000 3.89 0.00 41.89 3.62
3120 4194 9.586435 CATAATTCACACTACACTGATGAGTTA 57.414 33.333 0.00 0.00 0.00 2.24
3193 4290 0.041312 CGAAAAGTCACGGCAACCAG 60.041 55.000 0.00 0.00 0.00 4.00
3194 4291 0.317854 GAAAAGTCACGGCAACCAGC 60.318 55.000 0.00 0.00 44.65 4.85
3204 4301 1.747774 GCAACCAGCCAACCATGTT 59.252 52.632 0.00 0.00 37.23 2.71
3225 4322 2.108514 ATCGGCCATCACAACAGCG 61.109 57.895 2.24 0.00 0.00 5.18
3352 4449 3.240134 GAGCTGGAACTGGCGGTCA 62.240 63.158 0.00 0.00 33.73 4.02
3481 4578 2.293170 TCGCTCATCGACTTCTCTGAT 58.707 47.619 0.00 0.00 43.16 2.90
3529 4626 2.048127 AGGAAGACGCCGTGCTTC 60.048 61.111 16.11 16.11 39.74 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.453793 CGTTCAACAGTTTGCCCACA 59.546 50.000 0.00 0.00 32.17 4.17
1 2 0.869880 GCGTTCAACAGTTTGCCCAC 60.870 55.000 0.00 0.00 32.17 4.61
2 3 1.435515 GCGTTCAACAGTTTGCCCA 59.564 52.632 0.00 0.00 32.17 5.36
6 7 0.453793 TGTGGGCGTTCAACAGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
7 8 0.454196 GTGTGGGCGTTCAACAGTTT 59.546 50.000 0.00 0.00 0.00 2.66
8 9 0.678366 TGTGTGGGCGTTCAACAGTT 60.678 50.000 0.00 0.00 0.00 3.16
9 10 1.078072 TGTGTGGGCGTTCAACAGT 60.078 52.632 0.00 0.00 0.00 3.55
10 11 1.355210 GTGTGTGGGCGTTCAACAG 59.645 57.895 0.00 0.00 0.00 3.16
11 12 2.115911 GGTGTGTGGGCGTTCAACA 61.116 57.895 0.00 0.00 0.00 3.33
12 13 2.058829 CTGGTGTGTGGGCGTTCAAC 62.059 60.000 0.00 0.00 0.00 3.18
13 14 1.821759 CTGGTGTGTGGGCGTTCAA 60.822 57.895 0.00 0.00 0.00 2.69
14 15 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
15 16 3.660111 GCTGGTGTGTGGGCGTTC 61.660 66.667 0.00 0.00 0.00 3.95
19 20 4.603535 AAGGGCTGGTGTGTGGGC 62.604 66.667 0.00 0.00 0.00 5.36
20 21 1.903404 GAAAGGGCTGGTGTGTGGG 60.903 63.158 0.00 0.00 0.00 4.61
21 22 1.903404 GGAAAGGGCTGGTGTGTGG 60.903 63.158 0.00 0.00 0.00 4.17
22 23 2.260869 CGGAAAGGGCTGGTGTGTG 61.261 63.158 0.00 0.00 0.00 3.82
23 24 2.113139 CGGAAAGGGCTGGTGTGT 59.887 61.111 0.00 0.00 0.00 3.72
24 25 2.113139 ACGGAAAGGGCTGGTGTG 59.887 61.111 0.00 0.00 0.00 3.82
25 26 1.412453 TACACGGAAAGGGCTGGTGT 61.412 55.000 0.61 0.61 43.56 4.16
26 27 0.673644 CTACACGGAAAGGGCTGGTG 60.674 60.000 0.00 0.00 34.87 4.17
27 28 1.125711 ACTACACGGAAAGGGCTGGT 61.126 55.000 0.00 0.00 0.00 4.00
28 29 0.673644 CACTACACGGAAAGGGCTGG 60.674 60.000 0.00 0.00 0.00 4.85
29 30 0.320374 TCACTACACGGAAAGGGCTG 59.680 55.000 0.00 0.00 0.00 4.85
30 31 1.053424 TTCACTACACGGAAAGGGCT 58.947 50.000 0.00 0.00 0.00 5.19
31 32 1.534163 GTTTCACTACACGGAAAGGGC 59.466 52.381 0.00 0.00 33.99 5.19
32 33 1.796459 CGTTTCACTACACGGAAAGGG 59.204 52.381 0.00 0.00 36.04 3.95
39 40 1.662446 ACGGCCGTTTCACTACACG 60.662 57.895 28.70 0.00 36.12 4.49
40 41 0.877213 ACACGGCCGTTTCACTACAC 60.877 55.000 32.11 0.00 0.00 2.90
41 42 0.876777 CACACGGCCGTTTCACTACA 60.877 55.000 32.11 0.00 0.00 2.74
42 43 1.562575 CCACACGGCCGTTTCACTAC 61.563 60.000 32.11 0.00 0.00 2.73
43 44 1.301087 CCACACGGCCGTTTCACTA 60.301 57.895 32.11 0.00 0.00 2.74
44 45 2.590575 CCACACGGCCGTTTCACT 60.591 61.111 32.11 1.81 0.00 3.41
45 46 3.656045 CCCACACGGCCGTTTCAC 61.656 66.667 32.11 0.00 0.00 3.18
69 70 3.284449 GGTGTGTGGGCGTTCACC 61.284 66.667 7.58 0.00 42.40 4.02
70 71 2.515057 TGGTGTGTGGGCGTTCAC 60.515 61.111 3.83 3.83 38.09 3.18
71 72 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
72 73 2.110213 TCTGGTGTGTGGGCGTTC 59.890 61.111 0.00 0.00 0.00 3.95
73 74 2.203153 GTCTGGTGTGTGGGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
74 75 4.250305 GGTCTGGTGTGTGGGCGT 62.250 66.667 0.00 0.00 0.00 5.68
75 76 4.248842 TGGTCTGGTGTGTGGGCG 62.249 66.667 0.00 0.00 0.00 6.13
76 77 2.281761 CTGGTCTGGTGTGTGGGC 60.282 66.667 0.00 0.00 0.00 5.36
77 78 1.071471 GACTGGTCTGGTGTGTGGG 59.929 63.158 0.00 0.00 0.00 4.61
78 79 1.071471 GGACTGGTCTGGTGTGTGG 59.929 63.158 0.67 0.00 0.00 4.17
79 80 1.338107 TAGGACTGGTCTGGTGTGTG 58.662 55.000 0.67 0.00 0.00 3.82
80 81 1.902508 CATAGGACTGGTCTGGTGTGT 59.097 52.381 0.67 0.00 0.00 3.72
81 82 1.902508 ACATAGGACTGGTCTGGTGTG 59.097 52.381 0.67 0.00 0.00 3.82
82 83 1.902508 CACATAGGACTGGTCTGGTGT 59.097 52.381 0.67 1.38 0.00 4.16
83 84 1.208052 CCACATAGGACTGGTCTGGTG 59.792 57.143 0.67 4.77 41.22 4.17
84 85 1.573108 CCACATAGGACTGGTCTGGT 58.427 55.000 0.67 0.00 41.22 4.00
85 86 0.179000 GCCACATAGGACTGGTCTGG 59.821 60.000 0.67 1.86 41.22 3.86
86 87 0.904649 TGCCACATAGGACTGGTCTG 59.095 55.000 0.67 0.00 41.22 3.51
87 88 0.905357 GTGCCACATAGGACTGGTCT 59.095 55.000 0.00 0.00 41.22 3.85
88 89 0.905357 AGTGCCACATAGGACTGGTC 59.095 55.000 0.00 0.00 41.22 4.02
89 90 0.615331 CAGTGCCACATAGGACTGGT 59.385 55.000 5.40 0.00 39.67 4.00
90 91 0.904649 TCAGTGCCACATAGGACTGG 59.095 55.000 12.34 0.00 41.71 4.00
91 92 2.768253 TTCAGTGCCACATAGGACTG 57.232 50.000 6.84 6.84 42.25 3.51
92 93 3.181445 TGTTTTCAGTGCCACATAGGACT 60.181 43.478 0.00 0.00 41.22 3.85
93 94 3.146066 TGTTTTCAGTGCCACATAGGAC 58.854 45.455 0.00 0.00 41.22 3.85
94 95 3.500448 TGTTTTCAGTGCCACATAGGA 57.500 42.857 0.00 0.00 41.22 2.94
95 96 3.674138 GCATGTTTTCAGTGCCACATAGG 60.674 47.826 0.00 0.00 41.84 2.57
96 97 3.504863 GCATGTTTTCAGTGCCACATAG 58.495 45.455 0.00 0.00 32.41 2.23
97 98 2.230992 GGCATGTTTTCAGTGCCACATA 59.769 45.455 10.49 0.00 45.16 2.29
98 99 1.001181 GGCATGTTTTCAGTGCCACAT 59.999 47.619 10.49 0.00 45.16 3.21
99 100 0.388659 GGCATGTTTTCAGTGCCACA 59.611 50.000 10.49 0.00 45.16 4.17
100 101 3.199764 GGCATGTTTTCAGTGCCAC 57.800 52.632 10.49 0.00 45.16 5.01
102 103 1.340889 TCTTGGCATGTTTTCAGTGCC 59.659 47.619 8.58 8.58 45.58 5.01
103 104 2.798976 TCTTGGCATGTTTTCAGTGC 57.201 45.000 0.00 0.00 35.34 4.40
104 105 3.916172 CGAATCTTGGCATGTTTTCAGTG 59.084 43.478 14.24 0.00 0.00 3.66
105 106 3.569701 ACGAATCTTGGCATGTTTTCAGT 59.430 39.130 14.24 11.23 0.00 3.41
106 107 3.916172 CACGAATCTTGGCATGTTTTCAG 59.084 43.478 14.24 10.85 0.00 3.02
107 108 3.856638 GCACGAATCTTGGCATGTTTTCA 60.857 43.478 14.24 0.00 0.00 2.69
108 109 2.663119 GCACGAATCTTGGCATGTTTTC 59.337 45.455 0.00 4.94 0.00 2.29
109 110 2.676076 GCACGAATCTTGGCATGTTTT 58.324 42.857 0.00 0.00 0.00 2.43
110 111 1.401409 CGCACGAATCTTGGCATGTTT 60.401 47.619 0.00 0.00 0.00 2.83
111 112 0.168788 CGCACGAATCTTGGCATGTT 59.831 50.000 0.00 0.00 0.00 2.71
112 113 1.796151 CGCACGAATCTTGGCATGT 59.204 52.632 0.00 0.00 0.00 3.21
113 114 1.584483 GCGCACGAATCTTGGCATG 60.584 57.895 0.30 0.00 0.00 4.06
114 115 1.709147 GAGCGCACGAATCTTGGCAT 61.709 55.000 11.47 0.00 0.00 4.40
115 116 2.358615 AGCGCACGAATCTTGGCA 60.359 55.556 11.47 0.00 0.00 4.92
116 117 2.390599 TGAGCGCACGAATCTTGGC 61.391 57.895 11.47 0.00 0.00 4.52
117 118 1.421485 GTGAGCGCACGAATCTTGG 59.579 57.895 11.47 0.00 34.94 3.61
126 127 2.167918 GTTCGTTCGTGAGCGCAC 59.832 61.111 11.47 10.93 41.67 5.34
127 128 3.391631 CGTTCGTTCGTGAGCGCA 61.392 61.111 11.47 0.00 35.86 6.09
129 130 4.449161 CGCGTTCGTTCGTGAGCG 62.449 66.667 0.00 13.11 44.13 5.03
130 131 4.117372 CCGCGTTCGTTCGTGAGC 62.117 66.667 4.92 0.00 42.80 4.26
131 132 1.730593 GATCCGCGTTCGTTCGTGAG 61.731 60.000 4.92 7.16 42.80 3.51
132 133 1.798725 GATCCGCGTTCGTTCGTGA 60.799 57.895 4.92 0.00 42.80 4.35
133 134 2.687436 GATCCGCGTTCGTTCGTG 59.313 61.111 4.92 8.11 40.38 4.35
134 135 2.505557 GGATCCGCGTTCGTTCGT 60.506 61.111 4.92 0.00 0.00 3.85
135 136 2.505337 TGGATCCGCGTTCGTTCG 60.505 61.111 7.39 0.00 0.00 3.95
136 137 2.785105 CGTGGATCCGCGTTCGTTC 61.785 63.158 34.27 4.08 43.86 3.95
137 138 2.807895 CGTGGATCCGCGTTCGTT 60.808 61.111 34.27 0.00 43.86 3.85
145 146 2.880879 CTCACACGCGTGGATCCG 60.881 66.667 39.21 22.65 43.79 4.18
146 147 3.188786 GCTCACACGCGTGGATCC 61.189 66.667 39.21 22.28 43.79 3.36
154 155 2.796425 CTGCATCTCGCTCACACGC 61.796 63.158 0.00 0.00 43.06 5.34
155 156 1.153958 TCTGCATCTCGCTCACACG 60.154 57.895 0.00 0.00 43.06 4.49
156 157 0.389037 TGTCTGCATCTCGCTCACAC 60.389 55.000 0.00 0.00 43.06 3.82
157 158 0.389037 GTGTCTGCATCTCGCTCACA 60.389 55.000 0.00 0.00 43.06 3.58
158 159 1.080995 GGTGTCTGCATCTCGCTCAC 61.081 60.000 0.00 0.00 43.06 3.51
159 160 1.216444 GGTGTCTGCATCTCGCTCA 59.784 57.895 0.00 0.00 43.06 4.26
160 161 1.520342 GGGTGTCTGCATCTCGCTC 60.520 63.158 0.00 0.00 43.06 5.03
161 162 2.285773 TGGGTGTCTGCATCTCGCT 61.286 57.895 0.00 0.00 43.06 4.93
162 163 2.103042 GTGGGTGTCTGCATCTCGC 61.103 63.158 0.00 0.00 42.89 5.03
163 164 1.016130 GTGTGGGTGTCTGCATCTCG 61.016 60.000 0.00 0.00 0.00 4.04
164 165 0.035317 TGTGTGGGTGTCTGCATCTC 59.965 55.000 0.00 0.00 0.00 2.75
165 166 0.694771 ATGTGTGGGTGTCTGCATCT 59.305 50.000 0.00 0.00 0.00 2.90
166 167 0.806868 CATGTGTGGGTGTCTGCATC 59.193 55.000 0.00 0.00 0.00 3.91
167 168 0.111061 ACATGTGTGGGTGTCTGCAT 59.889 50.000 0.00 0.00 0.00 3.96
168 169 0.818852 CACATGTGTGGGTGTCTGCA 60.819 55.000 18.03 0.00 42.10 4.41
169 170 1.951510 CACATGTGTGGGTGTCTGC 59.048 57.895 18.03 0.00 42.10 4.26
178 179 0.947960 TGTTAACGCCCACATGTGTG 59.052 50.000 23.79 14.60 45.23 3.82
179 180 1.904287 ATGTTAACGCCCACATGTGT 58.096 45.000 23.79 8.06 32.19 3.72
180 181 3.296322 AAATGTTAACGCCCACATGTG 57.704 42.857 19.31 19.31 33.76 3.21
181 182 3.319405 TGAAAATGTTAACGCCCACATGT 59.681 39.130 0.26 0.00 33.76 3.21
182 183 3.906998 TGAAAATGTTAACGCCCACATG 58.093 40.909 0.26 0.00 33.76 3.21
183 184 3.613910 GCTGAAAATGTTAACGCCCACAT 60.614 43.478 0.26 0.00 35.00 3.21
184 185 2.287909 GCTGAAAATGTTAACGCCCACA 60.288 45.455 0.26 0.00 0.00 4.17
185 186 2.324860 GCTGAAAATGTTAACGCCCAC 58.675 47.619 0.26 0.00 0.00 4.61
186 187 1.271102 GGCTGAAAATGTTAACGCCCA 59.729 47.619 7.06 0.00 0.00 5.36
187 188 1.990799 GGCTGAAAATGTTAACGCCC 58.009 50.000 7.06 0.00 0.00 6.13
188 189 1.271102 TGGGCTGAAAATGTTAACGCC 59.729 47.619 9.24 9.24 35.41 5.68
189 190 2.715737 TGGGCTGAAAATGTTAACGC 57.284 45.000 0.26 0.00 0.00 4.84
190 191 3.738791 GGTTTGGGCTGAAAATGTTAACG 59.261 43.478 0.26 0.00 0.00 3.18
191 192 3.738791 CGGTTTGGGCTGAAAATGTTAAC 59.261 43.478 0.00 0.00 0.00 2.01
192 193 3.243907 CCGGTTTGGGCTGAAAATGTTAA 60.244 43.478 0.00 0.00 0.00 2.01
193 194 2.297597 CCGGTTTGGGCTGAAAATGTTA 59.702 45.455 0.00 0.00 0.00 2.41
194 195 1.069978 CCGGTTTGGGCTGAAAATGTT 59.930 47.619 0.00 0.00 0.00 2.71
195 196 0.678950 CCGGTTTGGGCTGAAAATGT 59.321 50.000 0.00 0.00 0.00 2.71
196 197 3.512978 CCGGTTTGGGCTGAAAATG 57.487 52.632 0.00 0.00 0.00 2.32
206 207 1.067974 GGTTGTTTCTTCCCGGTTTGG 59.932 52.381 0.00 0.00 37.55 3.28
207 208 1.268845 CGGTTGTTTCTTCCCGGTTTG 60.269 52.381 0.00 0.00 36.84 2.93
208 209 1.026584 CGGTTGTTTCTTCCCGGTTT 58.973 50.000 0.00 0.00 36.84 3.27
209 210 0.180878 TCGGTTGTTTCTTCCCGGTT 59.819 50.000 0.00 0.00 40.78 4.44
210 211 0.180878 TTCGGTTGTTTCTTCCCGGT 59.819 50.000 0.00 0.00 40.78 5.28
211 212 1.310904 TTTCGGTTGTTTCTTCCCGG 58.689 50.000 0.00 0.00 40.78 5.73
212 213 2.614983 TCTTTTCGGTTGTTTCTTCCCG 59.385 45.455 0.00 0.00 41.75 5.14
213 214 3.004419 CCTCTTTTCGGTTGTTTCTTCCC 59.996 47.826 0.00 0.00 0.00 3.97
214 215 3.881089 TCCTCTTTTCGGTTGTTTCTTCC 59.119 43.478 0.00 0.00 0.00 3.46
236 237 4.096382 GTCACAATCTCCTGTGTGTGTTTT 59.904 41.667 3.84 0.00 45.70 2.43
240 241 1.794701 CGTCACAATCTCCTGTGTGTG 59.205 52.381 3.84 0.00 45.70 3.82
241 242 1.412710 ACGTCACAATCTCCTGTGTGT 59.587 47.619 3.84 2.10 45.70 3.72
260 261 3.235195 CGACGGATATTTGGAGATCGAC 58.765 50.000 0.00 0.00 0.00 4.20
265 266 1.116308 TGCCGACGGATATTTGGAGA 58.884 50.000 20.50 0.00 0.00 3.71
273 274 0.968901 ACTGAAGGTGCCGACGGATA 60.969 55.000 20.50 1.99 0.00 2.59
278 279 1.228657 GGACAACTGAAGGTGCCGAC 61.229 60.000 0.00 0.00 0.00 4.79
390 391 5.012458 TCTCTCTCCACCAAATATATGCCAG 59.988 44.000 0.00 0.00 0.00 4.85
399 400 4.017591 TCTCTCTCTCTCTCTCCACCAAAT 60.018 45.833 0.00 0.00 0.00 2.32
405 406 1.138859 CGCTCTCTCTCTCTCTCTCCA 59.861 57.143 0.00 0.00 0.00 3.86
411 412 1.139058 ACTCCTCGCTCTCTCTCTCTC 59.861 57.143 0.00 0.00 0.00 3.20
412 413 1.139058 GACTCCTCGCTCTCTCTCTCT 59.861 57.143 0.00 0.00 0.00 3.10
413 414 1.583054 GACTCCTCGCTCTCTCTCTC 58.417 60.000 0.00 0.00 0.00 3.20
414 415 0.180406 GGACTCCTCGCTCTCTCTCT 59.820 60.000 0.00 0.00 0.00 3.10
415 416 0.107410 TGGACTCCTCGCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
416 417 0.393808 GTGGACTCCTCGCTCTCTCT 60.394 60.000 0.00 0.00 0.00 3.10
417 418 0.678366 TGTGGACTCCTCGCTCTCTC 60.678 60.000 0.00 0.00 0.00 3.20
423 424 1.668151 GGTGTTGTGGACTCCTCGC 60.668 63.158 0.00 0.00 38.58 5.03
424 425 0.321671 ATGGTGTTGTGGACTCCTCG 59.678 55.000 0.00 0.00 41.48 4.63
430 431 4.647424 TCAAAGAAATGGTGTTGTGGAC 57.353 40.909 0.00 0.00 0.00 4.02
442 443 9.466497 TTCTAGTATCTGCCAATTCAAAGAAAT 57.534 29.630 0.00 0.00 0.00 2.17
447 448 7.994425 TGTTTCTAGTATCTGCCAATTCAAA 57.006 32.000 0.00 0.00 0.00 2.69
448 449 7.611467 ACATGTTTCTAGTATCTGCCAATTCAA 59.389 33.333 0.00 0.00 0.00 2.69
466 479 8.807667 AATCATGTTCAAGAGAAACATGTTTC 57.192 30.769 34.21 34.21 46.85 2.78
467 480 8.636213 AGAATCATGTTCAAGAGAAACATGTTT 58.364 29.630 23.49 23.49 40.35 2.83
468 481 8.174733 AGAATCATGTTCAAGAGAAACATGTT 57.825 30.769 21.65 4.92 40.35 2.71
469 482 7.756395 AGAATCATGTTCAAGAGAAACATGT 57.244 32.000 21.65 9.33 40.35 3.21
470 483 8.080417 ACAAGAATCATGTTCAAGAGAAACATG 58.920 33.333 18.32 18.32 40.56 3.21
471 484 8.174733 ACAAGAATCATGTTCAAGAGAAACAT 57.825 30.769 9.64 0.00 35.08 2.71
472 485 7.572523 ACAAGAATCATGTTCAAGAGAAACA 57.427 32.000 9.64 0.00 35.08 2.83
473 486 8.778358 ACTACAAGAATCATGTTCAAGAGAAAC 58.222 33.333 0.00 0.00 35.08 2.78
474 487 8.908786 ACTACAAGAATCATGTTCAAGAGAAA 57.091 30.769 0.00 0.00 35.08 2.52
477 490 7.601886 ACTGACTACAAGAATCATGTTCAAGAG 59.398 37.037 0.00 0.00 32.27 2.85
479 492 7.360691 CCACTGACTACAAGAATCATGTTCAAG 60.361 40.741 0.00 0.00 32.27 3.02
480 493 6.427853 CCACTGACTACAAGAATCATGTTCAA 59.572 38.462 0.00 0.00 32.27 2.69
481 494 5.934043 CCACTGACTACAAGAATCATGTTCA 59.066 40.000 0.00 0.00 32.27 3.18
482 495 5.352569 CCCACTGACTACAAGAATCATGTTC 59.647 44.000 0.00 0.00 32.27 3.18
483 496 5.248640 CCCACTGACTACAAGAATCATGTT 58.751 41.667 0.00 0.00 32.27 2.71
484 497 4.323792 CCCCACTGACTACAAGAATCATGT 60.324 45.833 0.00 0.00 34.81 3.21
485 498 4.080919 TCCCCACTGACTACAAGAATCATG 60.081 45.833 0.00 0.00 0.00 3.07
486 499 4.104086 TCCCCACTGACTACAAGAATCAT 58.896 43.478 0.00 0.00 0.00 2.45
487 500 3.516586 TCCCCACTGACTACAAGAATCA 58.483 45.455 0.00 0.00 0.00 2.57
488 501 4.020128 AGTTCCCCACTGACTACAAGAATC 60.020 45.833 0.00 0.00 32.83 2.52
489 502 3.910627 AGTTCCCCACTGACTACAAGAAT 59.089 43.478 0.00 0.00 32.83 2.40
490 503 3.314693 AGTTCCCCACTGACTACAAGAA 58.685 45.455 0.00 0.00 32.83 2.52
491 504 2.972348 AGTTCCCCACTGACTACAAGA 58.028 47.619 0.00 0.00 32.83 3.02
492 505 3.771577 AAGTTCCCCACTGACTACAAG 57.228 47.619 0.00 0.00 35.12 3.16
493 506 3.456644 TGAAAGTTCCCCACTGACTACAA 59.543 43.478 0.00 0.00 35.12 2.41
494 507 3.042682 TGAAAGTTCCCCACTGACTACA 58.957 45.455 0.00 0.00 35.12 2.74
495 508 3.665190 CTGAAAGTTCCCCACTGACTAC 58.335 50.000 0.00 0.00 35.12 2.73
497 510 2.938956 CTGAAAGTTCCCCACTGACT 57.061 50.000 0.00 0.00 35.12 3.41
519 535 7.422399 GTTATTTTTGTTGCCAGTTGTAGAGA 58.578 34.615 0.00 0.00 0.00 3.10
522 538 6.276847 TGGTTATTTTTGTTGCCAGTTGTAG 58.723 36.000 0.00 0.00 0.00 2.74
525 541 5.584251 ACTTGGTTATTTTTGTTGCCAGTTG 59.416 36.000 0.00 0.00 0.00 3.16
529 545 4.446371 CCACTTGGTTATTTTTGTTGCCA 58.554 39.130 0.00 0.00 0.00 4.92
543 559 4.503296 GGATATTCATACTCGCCACTTGGT 60.503 45.833 0.00 0.00 37.57 3.67
550 572 6.631016 TGTAATCTGGATATTCATACTCGCC 58.369 40.000 0.00 0.00 0.00 5.54
551 573 7.815068 ACTTGTAATCTGGATATTCATACTCGC 59.185 37.037 0.00 0.00 0.00 5.03
563 585 7.405292 TGGATTTCTGAACTTGTAATCTGGAT 58.595 34.615 0.00 0.00 0.00 3.41
565 587 7.636150 ATGGATTTCTGAACTTGTAATCTGG 57.364 36.000 0.00 0.00 0.00 3.86
569 591 9.136323 GGGATTATGGATTTCTGAACTTGTAAT 57.864 33.333 0.00 0.00 0.00 1.89
570 592 7.559897 GGGGATTATGGATTTCTGAACTTGTAA 59.440 37.037 0.00 0.00 0.00 2.41
571 593 7.060421 GGGGATTATGGATTTCTGAACTTGTA 58.940 38.462 0.00 0.00 0.00 2.41
572 594 5.893824 GGGGATTATGGATTTCTGAACTTGT 59.106 40.000 0.00 0.00 0.00 3.16
573 595 5.009010 CGGGGATTATGGATTTCTGAACTTG 59.991 44.000 0.00 0.00 0.00 3.16
574 596 5.133221 CGGGGATTATGGATTTCTGAACTT 58.867 41.667 0.00 0.00 0.00 2.66
575 597 4.718961 CGGGGATTATGGATTTCTGAACT 58.281 43.478 0.00 0.00 0.00 3.01
576 598 3.253432 GCGGGGATTATGGATTTCTGAAC 59.747 47.826 0.00 0.00 0.00 3.18
577 599 3.117701 TGCGGGGATTATGGATTTCTGAA 60.118 43.478 0.00 0.00 0.00 3.02
578 600 2.441375 TGCGGGGATTATGGATTTCTGA 59.559 45.455 0.00 0.00 0.00 3.27
579 601 2.862541 TGCGGGGATTATGGATTTCTG 58.137 47.619 0.00 0.00 0.00 3.02
581 603 2.558359 CCTTGCGGGGATTATGGATTTC 59.442 50.000 0.00 0.00 0.00 2.17
587 636 3.221771 TGATTTCCTTGCGGGGATTATG 58.778 45.455 0.00 0.00 35.07 1.90
593 642 0.740737 GTCATGATTTCCTTGCGGGG 59.259 55.000 0.00 0.00 35.33 5.73
597 646 4.866486 GGACAAATGTCATGATTTCCTTGC 59.134 41.667 14.93 0.00 46.47 4.01
604 653 7.943079 TGTAATCTGGACAAATGTCATGATT 57.057 32.000 23.50 23.50 46.47 2.57
605 654 7.943079 TTGTAATCTGGACAAATGTCATGAT 57.057 32.000 14.93 13.19 46.47 2.45
607 656 7.369607 TGTTTGTAATCTGGACAAATGTCATG 58.630 34.615 14.93 7.17 45.71 3.07
612 661 8.542132 CAAGTTTGTTTGTAATCTGGACAAATG 58.458 33.333 4.43 0.00 45.71 2.32
615 664 6.039616 GCAAGTTTGTTTGTAATCTGGACAA 58.960 36.000 0.00 0.00 35.03 3.18
622 671 4.379793 CGAGCTGCAAGTTTGTTTGTAATC 59.620 41.667 1.02 0.00 35.30 1.75
623 672 4.036262 TCGAGCTGCAAGTTTGTTTGTAAT 59.964 37.500 1.02 0.00 35.30 1.89
624 673 3.375610 TCGAGCTGCAAGTTTGTTTGTAA 59.624 39.130 1.02 0.00 35.30 2.41
625 674 2.939756 TCGAGCTGCAAGTTTGTTTGTA 59.060 40.909 1.02 0.00 35.30 2.41
626 675 1.742831 TCGAGCTGCAAGTTTGTTTGT 59.257 42.857 1.02 0.00 35.30 2.83
627 676 2.473530 TCGAGCTGCAAGTTTGTTTG 57.526 45.000 1.02 0.00 35.30 2.93
628 677 3.438360 CTTTCGAGCTGCAAGTTTGTTT 58.562 40.909 1.02 0.00 35.30 2.83
629 678 2.796032 GCTTTCGAGCTGCAAGTTTGTT 60.796 45.455 1.02 0.00 35.30 2.83
630 679 1.268743 GCTTTCGAGCTGCAAGTTTGT 60.269 47.619 1.02 0.00 35.30 2.83
631 680 1.268692 TGCTTTCGAGCTGCAAGTTTG 60.269 47.619 1.02 0.00 35.30 2.93
632 681 1.024271 TGCTTTCGAGCTGCAAGTTT 58.976 45.000 1.02 0.00 35.30 2.66
633 682 1.198637 GATGCTTTCGAGCTGCAAGTT 59.801 47.619 11.82 0.00 40.24 2.66
634 683 0.801251 GATGCTTTCGAGCTGCAAGT 59.199 50.000 11.82 0.00 40.24 3.16
635 684 1.085091 AGATGCTTTCGAGCTGCAAG 58.915 50.000 11.82 0.00 40.24 4.01
636 685 1.198408 CAAGATGCTTTCGAGCTGCAA 59.802 47.619 11.82 0.00 40.24 4.08
637 686 0.800631 CAAGATGCTTTCGAGCTGCA 59.199 50.000 1.02 10.55 41.13 4.41
638 687 0.801251 ACAAGATGCTTTCGAGCTGC 59.199 50.000 0.00 0.00 35.49 5.25
639 688 3.515630 TCTACAAGATGCTTTCGAGCTG 58.484 45.455 0.00 0.00 35.49 4.24
640 689 3.876274 TCTACAAGATGCTTTCGAGCT 57.124 42.857 0.00 0.00 35.49 4.09
641 690 5.476752 AAATCTACAAGATGCTTTCGAGC 57.523 39.130 0.00 0.00 34.65 5.03
643 692 9.817809 AGTATAAAATCTACAAGATGCTTTCGA 57.182 29.630 0.00 0.00 34.65 3.71
685 757 7.721286 AATGTTTGTTCGCAATATGGAAAAA 57.279 28.000 0.00 0.00 36.91 1.94
686 758 7.543868 CCTAATGTTTGTTCGCAATATGGAAAA 59.456 33.333 0.00 0.00 36.91 2.29
693 765 7.389330 TCTTTCTCCTAATGTTTGTTCGCAATA 59.611 33.333 0.00 0.00 36.91 1.90
873 948 1.911293 TTAAGGACGACGACGACGGG 61.911 60.000 22.36 5.68 44.46 5.28
915 990 1.856265 GCACCGCTGTTTGGAAGGAG 61.856 60.000 0.00 0.00 0.00 3.69
934 1009 3.174987 TGGTGGTGGTGGTGGAGG 61.175 66.667 0.00 0.00 0.00 4.30
936 1011 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
937 1012 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
938 1013 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
939 1014 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
948 1023 3.133365 GCTCTTGGGTGGTGGTGGT 62.133 63.158 0.00 0.00 0.00 4.16
979 1054 1.679153 GGTCGATGTCTTCTCCTCTCC 59.321 57.143 0.00 0.00 0.00 3.71
989 1064 1.153289 GCAGCCATGGTCGATGTCT 60.153 57.895 14.67 0.00 0.00 3.41
992 1067 3.274586 CCGCAGCCATGGTCGATG 61.275 66.667 14.67 8.66 0.00 3.84
1182 1257 2.025418 GTCTGGTTGGTACGCACGG 61.025 63.158 0.00 0.00 0.00 4.94
1198 1273 2.423803 GGGAGGAAGAGTAGGAGGAGTC 60.424 59.091 0.00 0.00 0.00 3.36
1205 1280 2.787035 AGGACTAGGGAGGAAGAGTAGG 59.213 54.545 0.00 0.00 0.00 3.18
1207 1282 2.784682 GGAGGACTAGGGAGGAAGAGTA 59.215 54.545 0.00 0.00 0.00 2.59
1208 1283 1.571936 GGAGGACTAGGGAGGAAGAGT 59.428 57.143 0.00 0.00 0.00 3.24
1249 1325 6.864165 GCAGACAAGTAGAGTATATAACTGCC 59.136 42.308 0.00 0.00 39.07 4.85
1250 1326 6.864165 GGCAGACAAGTAGAGTATATAACTGC 59.136 42.308 0.00 0.00 39.07 4.40
1252 1328 7.255660 GCAGGCAGACAAGTAGAGTATATAACT 60.256 40.741 0.00 0.00 42.80 2.24
1253 1329 6.864165 GCAGGCAGACAAGTAGAGTATATAAC 59.136 42.308 0.00 0.00 0.00 1.89
1254 1330 6.778069 AGCAGGCAGACAAGTAGAGTATATAA 59.222 38.462 0.00 0.00 0.00 0.98
1256 1332 5.144100 AGCAGGCAGACAAGTAGAGTATAT 58.856 41.667 0.00 0.00 0.00 0.86
1257 1333 4.537751 AGCAGGCAGACAAGTAGAGTATA 58.462 43.478 0.00 0.00 0.00 1.47
1258 1334 3.370104 AGCAGGCAGACAAGTAGAGTAT 58.630 45.455 0.00 0.00 0.00 2.12
1259 1335 2.808919 AGCAGGCAGACAAGTAGAGTA 58.191 47.619 0.00 0.00 0.00 2.59
1260 1336 1.638529 AGCAGGCAGACAAGTAGAGT 58.361 50.000 0.00 0.00 0.00 3.24
1261 1337 2.344950 CAAGCAGGCAGACAAGTAGAG 58.655 52.381 0.00 0.00 0.00 2.43
1262 1338 1.609061 GCAAGCAGGCAGACAAGTAGA 60.609 52.381 0.00 0.00 0.00 2.59
1263 1339 0.801251 GCAAGCAGGCAGACAAGTAG 59.199 55.000 0.00 0.00 0.00 2.57
1267 1343 0.251033 ATCAGCAAGCAGGCAGACAA 60.251 50.000 2.37 0.00 31.88 3.18
1272 1348 0.037160 TCAAGATCAGCAAGCAGGCA 59.963 50.000 0.00 0.00 35.83 4.75
1285 1361 5.112686 GCGACCAGAAACTAAGATCAAGAT 58.887 41.667 0.00 0.00 0.00 2.40
1327 1403 1.800586 CATATCGGAATCTTGCACGGG 59.199 52.381 0.00 0.00 0.00 5.28
1405 1482 2.002586 CAAGTAGGCAACAGACATCGG 58.997 52.381 0.00 0.00 41.41 4.18
1406 1483 1.394917 GCAAGTAGGCAACAGACATCG 59.605 52.381 0.00 0.00 41.41 3.84
1466 1546 1.516423 CTGCTGCTGCTCTGCTCTA 59.484 57.895 17.00 0.00 39.95 2.43
1467 1547 2.266372 CTGCTGCTGCTCTGCTCT 59.734 61.111 17.00 0.00 39.95 4.09
1484 1564 1.202580 ACGACCAGAGCAGGATATTGC 60.203 52.381 0.00 0.00 44.41 3.56
1485 1565 2.898729 ACGACCAGAGCAGGATATTG 57.101 50.000 0.00 0.00 0.00 1.90
1486 1566 3.833732 TCTACGACCAGAGCAGGATATT 58.166 45.455 0.00 0.00 0.00 1.28
1520 1600 1.148498 GCACCCCCTCCTAAATCCG 59.852 63.158 0.00 0.00 0.00 4.18
1528 1608 3.081409 TTCGCTAGCACCCCCTCC 61.081 66.667 16.45 0.00 0.00 4.30
1531 1611 2.187163 GTCTTCGCTAGCACCCCC 59.813 66.667 16.45 0.00 0.00 5.40
1536 1616 0.820226 ATGCTCTGTCTTCGCTAGCA 59.180 50.000 16.45 0.00 46.30 3.49
1596 1676 2.997315 CCCCGTGGACAGAGCAGA 60.997 66.667 0.00 0.00 0.00 4.26
1609 1689 1.221021 GACACCTAGGAAAGCCCCG 59.779 63.158 17.98 0.00 34.66 5.73
1610 1690 1.221021 CGACACCTAGGAAAGCCCC 59.779 63.158 17.98 0.00 34.66 5.80
1644 1724 3.965539 AAATCTGCGCCGCTGCTCT 62.966 57.895 11.67 0.00 35.36 4.09
1657 1737 3.199880 CCATCTGGCTAACCGAAATCT 57.800 47.619 0.00 0.00 39.70 2.40
1672 1752 0.394352 GGGTGGTCAATTCGCCATCT 60.394 55.000 7.70 0.00 36.21 2.90
1678 1758 0.178068 AGGATCGGGTGGTCAATTCG 59.822 55.000 0.00 0.00 0.00 3.34
1682 1762 1.829222 GAGTTAGGATCGGGTGGTCAA 59.171 52.381 0.00 0.00 0.00 3.18
1721 1801 1.057706 GAATTTGCAAGCGCGCTTAAC 59.942 47.619 42.41 34.93 42.97 2.01
1759 1904 5.109662 CTGATGGATGACAATCAGCAATC 57.890 43.478 4.78 4.78 42.12 2.67
1764 1909 3.805207 TGAGCTGATGGATGACAATCAG 58.195 45.455 10.16 10.16 42.37 2.90
1767 1912 3.137728 TGGATGAGCTGATGGATGACAAT 59.862 43.478 0.00 0.00 0.00 2.71
1769 1914 2.121129 TGGATGAGCTGATGGATGACA 58.879 47.619 0.00 0.00 0.00 3.58
1770 1915 2.924757 TGGATGAGCTGATGGATGAC 57.075 50.000 0.00 0.00 0.00 3.06
1771 1916 2.039879 CCATGGATGAGCTGATGGATGA 59.960 50.000 5.56 0.00 38.10 2.92
1791 2301 7.045126 ACATGATCTAGCTAACTACAGAACC 57.955 40.000 0.00 0.00 0.00 3.62
1792 2302 9.453325 GTAACATGATCTAGCTAACTACAGAAC 57.547 37.037 0.00 0.00 0.00 3.01
1794 2304 8.747538 TGTAACATGATCTAGCTAACTACAGA 57.252 34.615 0.00 0.00 0.00 3.41
1795 2305 9.404348 CATGTAACATGATCTAGCTAACTACAG 57.596 37.037 0.00 0.00 0.00 2.74
1797 2307 9.186323 CACATGTAACATGATCTAGCTAACTAC 57.814 37.037 0.00 0.00 0.00 2.73
1798 2308 7.867909 GCACATGTAACATGATCTAGCTAACTA 59.132 37.037 0.00 0.00 0.00 2.24
1799 2309 6.703607 GCACATGTAACATGATCTAGCTAACT 59.296 38.462 0.00 0.00 0.00 2.24
1800 2310 6.703607 AGCACATGTAACATGATCTAGCTAAC 59.296 38.462 0.00 0.00 0.00 2.34
1801 2311 6.820335 AGCACATGTAACATGATCTAGCTAA 58.180 36.000 0.00 0.00 0.00 3.09
1802 2312 6.040842 TGAGCACATGTAACATGATCTAGCTA 59.959 38.462 0.00 0.00 30.14 3.32
1803 2313 5.163374 TGAGCACATGTAACATGATCTAGCT 60.163 40.000 0.00 0.00 30.14 3.32
1804 2314 5.052481 TGAGCACATGTAACATGATCTAGC 58.948 41.667 0.00 0.00 30.14 3.42
1805 2315 7.116519 CAGATGAGCACATGTAACATGATCTAG 59.883 40.741 0.00 0.00 36.82 2.43
1811 2321 3.375922 TGCAGATGAGCACATGTAACATG 59.624 43.478 0.00 0.00 40.11 3.21
1836 2346 8.249638 ACACTGTTCATAGCATAGATAGCATAG 58.750 37.037 0.00 0.00 0.00 2.23
1837 2347 8.127150 ACACTGTTCATAGCATAGATAGCATA 57.873 34.615 0.00 0.00 0.00 3.14
1847 2357 8.840321 GTCCATATTTAACACTGTTCATAGCAT 58.160 33.333 0.00 0.00 0.00 3.79
1848 2358 7.011016 CGTCCATATTTAACACTGTTCATAGCA 59.989 37.037 0.00 0.00 0.00 3.49
1849 2359 7.345192 CGTCCATATTTAACACTGTTCATAGC 58.655 38.462 0.00 0.00 0.00 2.97
1850 2360 7.011016 TGCGTCCATATTTAACACTGTTCATAG 59.989 37.037 0.00 0.00 0.00 2.23
1851 2361 6.819146 TGCGTCCATATTTAACACTGTTCATA 59.181 34.615 0.00 0.00 0.00 2.15
1852 2362 5.645929 TGCGTCCATATTTAACACTGTTCAT 59.354 36.000 0.00 0.00 0.00 2.57
1881 2391 6.955963 GTCACATGAACAGCTAATTTACTTCG 59.044 38.462 0.00 0.00 0.00 3.79
1885 2395 6.494893 TGGTCACATGAACAGCTAATTTAC 57.505 37.500 0.00 0.00 36.73 2.01
1932 2460 2.415893 GCACATGTAAACTGCATGGACC 60.416 50.000 0.00 0.00 45.68 4.46
1935 2463 3.057386 TCTTGCACATGTAAACTGCATGG 60.057 43.478 16.21 10.04 45.68 3.66
1953 2481 2.871022 GTGTGAGCATGCTAGGATCTTG 59.129 50.000 22.74 0.00 0.00 3.02
2028 2556 4.056050 TGGAAGAAAGAAACGAGTACAGC 58.944 43.478 0.00 0.00 0.00 4.40
2037 2565 6.980397 TCAAAGCTGAAATGGAAGAAAGAAAC 59.020 34.615 0.00 0.00 0.00 2.78
2130 2658 2.346766 TGGTGTTGAGCATGTCAAGT 57.653 45.000 9.93 0.00 46.18 3.16
2133 2661 2.026915 AGCTATGGTGTTGAGCATGTCA 60.027 45.455 0.00 0.00 40.57 3.58
2148 2676 3.386078 TCACCTCCTTCTGCTTAGCTATG 59.614 47.826 5.60 0.00 0.00 2.23
2235 2765 4.119136 CAACCTGCCGAAAAATGAAAACT 58.881 39.130 0.00 0.00 0.00 2.66
2259 2789 2.818751 ACAGGACTTTGGAAACCACA 57.181 45.000 0.00 0.00 30.78 4.17
2333 2863 1.751927 CTGCTCCCAATGACCAGGC 60.752 63.158 0.00 0.00 0.00 4.85
2392 2922 4.708177 CTGAAGAAGAGTTTGGAGGTCAA 58.292 43.478 0.00 0.00 0.00 3.18
2393 2923 3.495100 GCTGAAGAAGAGTTTGGAGGTCA 60.495 47.826 0.00 0.00 0.00 4.02
2406 2936 3.278367 CACACAATGTGGCTGAAGAAG 57.722 47.619 18.37 0.00 44.27 2.85
2588 3118 4.532834 AGGACTCCAGCAAACTAAAACAA 58.467 39.130 0.00 0.00 0.00 2.83
2602 3132 4.777896 GCCAACTGGATATATAGGACTCCA 59.222 45.833 0.00 3.37 37.39 3.86
2754 3285 2.158682 TGACTCAGGGTGCAAAAGCTAA 60.159 45.455 0.00 0.00 0.00 3.09
2768 3299 2.433838 CAGCACGGCCTGACTCAG 60.434 66.667 0.00 0.00 34.77 3.35
2789 3320 0.109458 AACATCACGCATGCAGCAAG 60.109 50.000 19.57 6.70 46.13 4.01
2793 3324 2.352342 TGTATGAACATCACGCATGCAG 59.648 45.455 19.57 12.98 35.65 4.41
2799 3330 4.928661 AGAAACTGTATGAACATCACGC 57.071 40.909 0.00 0.00 34.37 5.34
2804 3335 8.354711 TCAGACTCTAGAAACTGTATGAACAT 57.645 34.615 18.86 0.00 34.37 2.71
2843 3374 6.524586 CCATCGTAAAAAGAAACAGCAGAATC 59.475 38.462 0.00 0.00 0.00 2.52
2844 3375 6.206634 TCCATCGTAAAAAGAAACAGCAGAAT 59.793 34.615 0.00 0.00 0.00 2.40
2845 3376 5.529430 TCCATCGTAAAAAGAAACAGCAGAA 59.471 36.000 0.00 0.00 0.00 3.02
2847 3378 5.147162 GTCCATCGTAAAAAGAAACAGCAG 58.853 41.667 0.00 0.00 0.00 4.24
2848 3379 4.576873 TGTCCATCGTAAAAAGAAACAGCA 59.423 37.500 0.00 0.00 0.00 4.41
2849 3380 5.103290 TGTCCATCGTAAAAAGAAACAGC 57.897 39.130 0.00 0.00 0.00 4.40
2850 3381 5.147162 GCTGTCCATCGTAAAAAGAAACAG 58.853 41.667 0.00 0.00 35.78 3.16
2851 3382 4.023536 GGCTGTCCATCGTAAAAAGAAACA 60.024 41.667 0.00 0.00 0.00 2.83
2852 3383 4.023536 TGGCTGTCCATCGTAAAAAGAAAC 60.024 41.667 0.00 0.00 37.47 2.78
2853 3384 4.138290 TGGCTGTCCATCGTAAAAAGAAA 58.862 39.130 0.00 0.00 37.47 2.52
2854 3385 3.745799 TGGCTGTCCATCGTAAAAAGAA 58.254 40.909 0.00 0.00 37.47 2.52
2855 3386 3.410631 TGGCTGTCCATCGTAAAAAGA 57.589 42.857 0.00 0.00 37.47 2.52
2872 3403 1.818555 CTAGCCCAGGCAAAATGGC 59.181 57.895 12.03 0.00 44.88 4.40
2873 3404 0.971959 TGCTAGCCCAGGCAAAATGG 60.972 55.000 13.29 0.00 44.88 3.16
2874 3405 0.896923 TTGCTAGCCCAGGCAAAATG 59.103 50.000 13.29 0.00 44.01 2.32
2875 3406 3.379617 TTGCTAGCCCAGGCAAAAT 57.620 47.368 13.29 0.00 44.01 1.82
2876 3407 4.941103 TTGCTAGCCCAGGCAAAA 57.059 50.000 13.29 0.00 44.01 2.44
2879 3410 1.076777 GGAATTGCTAGCCCAGGCA 60.077 57.895 13.29 0.00 44.88 4.75
2880 3411 2.189499 CGGAATTGCTAGCCCAGGC 61.189 63.158 13.29 0.00 42.33 4.85
2881 3412 0.533755 CTCGGAATTGCTAGCCCAGG 60.534 60.000 13.29 0.00 0.00 4.45
2882 3413 0.533755 CCTCGGAATTGCTAGCCCAG 60.534 60.000 13.29 6.30 0.00 4.45
2883 3414 1.271840 ACCTCGGAATTGCTAGCCCA 61.272 55.000 13.29 0.00 0.00 5.36
2884 3415 0.533085 GACCTCGGAATTGCTAGCCC 60.533 60.000 13.29 4.86 0.00 5.19
2885 3416 0.533085 GGACCTCGGAATTGCTAGCC 60.533 60.000 13.29 0.00 0.00 3.93
2886 3417 0.178068 TGGACCTCGGAATTGCTAGC 59.822 55.000 8.10 8.10 0.00 3.42
2887 3418 2.874701 CAATGGACCTCGGAATTGCTAG 59.125 50.000 0.00 0.00 0.00 3.42
2888 3419 2.917933 CAATGGACCTCGGAATTGCTA 58.082 47.619 0.00 0.00 0.00 3.49
2889 3420 1.755179 CAATGGACCTCGGAATTGCT 58.245 50.000 0.00 0.00 0.00 3.91
2890 3421 0.101219 GCAATGGACCTCGGAATTGC 59.899 55.000 9.87 9.87 45.56 3.56
2891 3422 1.402968 CTGCAATGGACCTCGGAATTG 59.597 52.381 0.00 0.00 33.98 2.32
2892 3423 1.281867 TCTGCAATGGACCTCGGAATT 59.718 47.619 0.00 0.00 0.00 2.17
2893 3424 0.911769 TCTGCAATGGACCTCGGAAT 59.088 50.000 0.00 0.00 0.00 3.01
2894 3425 0.911769 ATCTGCAATGGACCTCGGAA 59.088 50.000 0.00 0.00 0.00 4.30
2895 3426 0.178767 CATCTGCAATGGACCTCGGA 59.821 55.000 0.00 0.00 0.00 4.55
2896 3427 1.442526 GCATCTGCAATGGACCTCGG 61.443 60.000 9.81 0.00 41.59 4.63
2897 3428 0.463295 AGCATCTGCAATGGACCTCG 60.463 55.000 4.79 0.00 45.16 4.63
2898 3429 2.158842 ACTAGCATCTGCAATGGACCTC 60.159 50.000 4.79 0.00 45.16 3.85
2899 3430 1.842562 ACTAGCATCTGCAATGGACCT 59.157 47.619 4.79 3.36 45.16 3.85
2900 3431 2.338577 ACTAGCATCTGCAATGGACC 57.661 50.000 4.79 0.00 45.16 4.46
2921 3456 5.885912 TGACTTTTCTTCCAGTGCTTAAAGT 59.114 36.000 0.00 0.00 37.14 2.66
2926 3461 3.620488 TGTGACTTTTCTTCCAGTGCTT 58.380 40.909 0.00 0.00 0.00 3.91
2931 3466 4.755123 ACCGTAATGTGACTTTTCTTCCAG 59.245 41.667 0.00 0.00 0.00 3.86
2933 3468 5.449304 CAACCGTAATGTGACTTTTCTTCC 58.551 41.667 0.00 0.00 0.00 3.46
2934 3469 4.909880 GCAACCGTAATGTGACTTTTCTTC 59.090 41.667 0.00 0.00 0.00 2.87
2940 3475 3.436704 CAGATGCAACCGTAATGTGACTT 59.563 43.478 0.00 0.00 0.00 3.01
2965 3500 8.391699 AGATTTATCATCATGATCCATTGAGGT 58.608 33.333 2.48 0.00 38.26 3.85
2971 3506 9.682465 CCAGTAAGATTTATCATCATGATCCAT 57.318 33.333 2.48 3.62 38.26 3.41
2987 3522 6.055588 AGCATATACAAACGCCAGTAAGATT 58.944 36.000 0.00 0.00 0.00 2.40
2991 3526 5.179533 TGAAGCATATACAAACGCCAGTAA 58.820 37.500 0.00 0.00 0.00 2.24
2996 3531 3.363178 GCTTGAAGCATATACAAACGCC 58.637 45.455 13.09 0.00 41.89 5.68
3013 3548 5.902613 TGGTTCCTATTTGATCTTGCTTG 57.097 39.130 0.00 0.00 0.00 4.01
3028 3564 2.040278 TCTACTTGCTTGCATGGTTCCT 59.960 45.455 12.06 0.00 0.00 3.36
3033 3569 1.133790 GCCTTCTACTTGCTTGCATGG 59.866 52.381 12.06 4.52 0.00 3.66
3120 4194 4.591321 TGGGATTTAGCTCCATGTCTTT 57.409 40.909 0.00 0.00 37.01 2.52
3204 4301 0.392863 CTGTTGTGATGGCCGATGGA 60.393 55.000 0.00 0.00 0.00 3.41
3225 4322 1.202879 TGGTGGTGGTGGATGAACTTC 60.203 52.381 0.00 0.00 0.00 3.01
3352 4449 2.688666 TTCCGCTGGATGGAGGCT 60.689 61.111 0.00 0.00 36.72 4.58
3478 4575 4.550422 CGATCGAAAGCATCTTCCTATCA 58.450 43.478 10.26 0.00 0.00 2.15
3481 4578 2.545952 GCCGATCGAAAGCATCTTCCTA 60.546 50.000 18.66 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.