Multiple sequence alignment - TraesCS1B01G116600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G116600 chr1B 100.000 2201 0 0 1 2201 136926705 136928905 0.000000e+00 4065.0
1 TraesCS1B01G116600 chr1B 95.113 266 12 1 1937 2201 480897986 480897721 3.380000e-113 418.0
2 TraesCS1B01G116600 chr1D 95.122 1558 39 12 1 1543 83914592 83916127 0.000000e+00 2422.0
3 TraesCS1B01G116600 chr1D 89.977 429 13 12 1537 1936 83917945 83918372 5.380000e-146 527.0
4 TraesCS1B01G116600 chr1A 93.585 1590 64 15 1 1569 100417781 100419353 0.000000e+00 2337.0
5 TraesCS1B01G116600 chr1A 89.169 397 23 8 1553 1936 100420012 100420401 5.500000e-131 477.0
6 TraesCS1B01G116600 chr5B 95.489 266 11 1 1937 2201 598990848 598991113 7.260000e-115 424.0
7 TraesCS1B01G116600 chr5B 94.382 267 14 1 1936 2201 617044136 617043870 2.030000e-110 409.0
8 TraesCS1B01G116600 chr2B 92.251 271 19 2 1933 2201 47495898 47495628 1.230000e-102 383.0
9 TraesCS1B01G116600 chr2B 92.509 267 17 3 1936 2201 714795505 714795769 1.590000e-101 379.0
10 TraesCS1B01G116600 chr2B 100.000 28 0 0 886 913 103794715 103794742 4.000000e-03 52.8
11 TraesCS1B01G116600 chr6B 92.481 266 19 1 1937 2201 561271074 561271339 1.590000e-101 379.0
12 TraesCS1B01G116600 chr6B 91.729 266 22 0 1936 2201 715476414 715476679 9.600000e-99 370.0
13 TraesCS1B01G116600 chr6B 91.450 269 18 3 1938 2201 676862188 676862456 4.470000e-97 364.0
14 TraesCS1B01G116600 chr7B 91.353 266 18 4 1936 2198 57694170 57694433 2.080000e-95 359.0
15 TraesCS1B01G116600 chr2D 100.000 28 0 0 886 913 67443219 67443192 4.000000e-03 52.8
16 TraesCS1B01G116600 chr2D 100.000 28 0 0 886 913 67445849 67445822 4.000000e-03 52.8
17 TraesCS1B01G116600 chr2A 100.000 28 0 0 886 913 66914715 66914742 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G116600 chr1B 136926705 136928905 2200 False 4065.0 4065 100.0000 1 2201 1 chr1B.!!$F1 2200
1 TraesCS1B01G116600 chr1D 83914592 83918372 3780 False 1474.5 2422 92.5495 1 1936 2 chr1D.!!$F1 1935
2 TraesCS1B01G116600 chr1A 100417781 100420401 2620 False 1407.0 2337 91.3770 1 1936 2 chr1A.!!$F1 1935

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.108804 TCGACTTCATCAGTTCGCCC 60.109 55.0 0.0 0.0 35.01 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 4311 0.403271 ATTGGTGGACAGAAGCTGCT 59.597 50.0 0.0 0.0 34.37 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.270275 AGCTCGACTTCATCAGTTCG 57.730 50.000 0.00 0.00 35.01 3.95
27 28 0.642800 GCTCGACTTCATCAGTTCGC 59.357 55.000 0.00 0.00 35.01 4.70
29 30 0.108804 TCGACTTCATCAGTTCGCCC 60.109 55.000 0.00 0.00 35.01 6.13
30 31 0.389817 CGACTTCATCAGTTCGCCCA 60.390 55.000 0.00 0.00 35.01 5.36
31 32 1.808411 GACTTCATCAGTTCGCCCAA 58.192 50.000 0.00 0.00 35.01 4.12
32 33 1.464997 GACTTCATCAGTTCGCCCAAC 59.535 52.381 0.00 0.00 35.01 3.77
33 34 1.202758 ACTTCATCAGTTCGCCCAACA 60.203 47.619 0.00 0.00 37.48 3.33
34 35 2.086869 CTTCATCAGTTCGCCCAACAT 58.913 47.619 0.00 0.00 37.48 2.71
35 36 2.198827 TCATCAGTTCGCCCAACATT 57.801 45.000 0.00 0.00 37.48 2.71
36 37 2.513753 TCATCAGTTCGCCCAACATTT 58.486 42.857 0.00 0.00 37.48 2.32
37 38 2.890311 TCATCAGTTCGCCCAACATTTT 59.110 40.909 0.00 0.00 37.48 1.82
38 39 3.320541 TCATCAGTTCGCCCAACATTTTT 59.679 39.130 0.00 0.00 37.48 1.94
52 53 7.201401 GCCCAACATTTTTGTAAACGATATCAC 60.201 37.037 3.12 0.00 0.00 3.06
98 100 3.365164 GGCTATGTACCTCGAACGAGATC 60.365 52.174 22.96 13.50 44.53 2.75
139 147 8.925161 TGGCAATGAACTAGTTTATTTATTGC 57.075 30.769 26.29 26.29 44.91 3.56
250 264 2.774439 AGAAAATCGCAACGCACTTT 57.226 40.000 0.00 0.00 0.00 2.66
251 265 2.650608 AGAAAATCGCAACGCACTTTC 58.349 42.857 0.00 0.00 0.00 2.62
252 266 1.713932 GAAAATCGCAACGCACTTTCC 59.286 47.619 0.00 0.00 0.00 3.13
256 270 1.075542 TCGCAACGCACTTTCCATAG 58.924 50.000 0.00 0.00 0.00 2.23
298 312 1.414181 TCTGATGCTTCGAAGGGATCC 59.586 52.381 25.77 1.92 31.89 3.36
379 393 3.478394 GCATGCAAGACGCGTCGA 61.478 61.111 31.56 18.03 46.97 4.20
627 650 2.350458 GGGGTTGTAGCCGTACGGA 61.350 63.158 37.62 15.62 36.39 4.69
1106 1129 1.291877 ACGCGCATCTTGGAGAACAC 61.292 55.000 5.73 0.00 0.00 3.32
1280 1306 2.100916 GACGTATGGAGGAGCAAGCTAA 59.899 50.000 0.00 0.00 0.00 3.09
1294 1320 6.434018 AGCAAGCTAAGAATGATTCTCAAC 57.566 37.500 8.32 1.03 39.61 3.18
1350 1376 1.202428 GGAGATGGCTAGTGACGGTTC 60.202 57.143 0.00 0.00 0.00 3.62
1375 1401 1.668628 CGTAGGGTTGCAATGTTTGGC 60.669 52.381 0.59 0.00 0.00 4.52
1404 1430 7.231115 GGTGGTTAGTTTAGTGGGTAATTTTGA 59.769 37.037 0.00 0.00 0.00 2.69
1405 1431 8.799367 GTGGTTAGTTTAGTGGGTAATTTTGAT 58.201 33.333 0.00 0.00 0.00 2.57
1579 4105 8.000709 TCATGGCTACCTTATTGATCTCAAATT 58.999 33.333 0.00 0.00 39.55 1.82
1659 4205 7.251281 ACAAGAAAGCTTACTCTCAAAACAAC 58.749 34.615 0.00 0.00 31.81 3.32
1732 4283 7.925483 TGTTTAAATGTTTCCAATCTCCACAAG 59.075 33.333 0.00 0.00 0.00 3.16
1793 4344 5.240623 TGTCCACCAATAGTTTGTTCATGTC 59.759 40.000 0.00 0.00 0.00 3.06
1829 4380 4.279420 ACTTTCAAGGAGTTTGATTCTGCC 59.721 41.667 0.00 0.00 44.90 4.85
1831 4382 3.831323 TCAAGGAGTTTGATTCTGCCAA 58.169 40.909 0.00 0.00 40.82 4.52
1832 4383 3.569701 TCAAGGAGTTTGATTCTGCCAAC 59.430 43.478 0.00 0.00 40.82 3.77
1833 4384 3.515602 AGGAGTTTGATTCTGCCAACT 57.484 42.857 0.00 0.00 0.00 3.16
1834 4385 4.640771 AGGAGTTTGATTCTGCCAACTA 57.359 40.909 0.00 0.00 0.00 2.24
1856 4414 1.237285 ACCGAGTGAATGCTGCCAAC 61.237 55.000 0.00 0.00 0.00 3.77
1857 4415 0.957395 CCGAGTGAATGCTGCCAACT 60.957 55.000 0.00 0.00 0.00 3.16
1861 4421 3.058293 CGAGTGAATGCTGCCAACTAAAA 60.058 43.478 0.00 0.00 0.00 1.52
1863 4423 3.005791 AGTGAATGCTGCCAACTAAAACC 59.994 43.478 0.00 0.00 0.00 3.27
1878 4438 6.422776 ACTAAAACCATGTTTCATAGCTCG 57.577 37.500 0.00 0.00 0.00 5.03
1936 4496 1.039068 CATGTCTGCAAACCCACCAA 58.961 50.000 0.00 0.00 0.00 3.67
1937 4497 1.000060 CATGTCTGCAAACCCACCAAG 60.000 52.381 0.00 0.00 0.00 3.61
1938 4498 0.257328 TGTCTGCAAACCCACCAAGA 59.743 50.000 0.00 0.00 0.00 3.02
1939 4499 0.954452 GTCTGCAAACCCACCAAGAG 59.046 55.000 0.00 0.00 0.00 2.85
1940 4500 0.823356 TCTGCAAACCCACCAAGAGC 60.823 55.000 0.00 0.00 0.00 4.09
1941 4501 1.076412 TGCAAACCCACCAAGAGCA 60.076 52.632 0.00 0.00 0.00 4.26
1942 4502 0.469705 TGCAAACCCACCAAGAGCAT 60.470 50.000 0.00 0.00 0.00 3.79
1943 4503 0.244721 GCAAACCCACCAAGAGCATC 59.755 55.000 0.00 0.00 0.00 3.91
1954 4514 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
1955 4515 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
1956 4516 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
1977 4537 4.050934 CCCAGGGCGCCGAAAAAC 62.051 66.667 22.54 4.96 0.00 2.43
1978 4538 2.983592 CCAGGGCGCCGAAAAACT 60.984 61.111 22.54 7.71 0.00 2.66
1979 4539 2.255252 CAGGGCGCCGAAAAACTG 59.745 61.111 22.54 16.90 0.00 3.16
1980 4540 3.670377 AGGGCGCCGAAAAACTGC 61.670 61.111 22.54 2.36 0.00 4.40
1986 4546 2.255252 CCGAAAAACTGCGGCCTG 59.745 61.111 0.00 0.00 41.17 4.85
1987 4547 2.255252 CGAAAAACTGCGGCCTGG 59.745 61.111 0.00 0.00 0.00 4.45
1988 4548 2.650778 GAAAAACTGCGGCCTGGG 59.349 61.111 0.00 0.00 0.00 4.45
1989 4549 2.917227 AAAAACTGCGGCCTGGGG 60.917 61.111 0.00 0.00 0.00 4.96
2015 4575 4.530857 CGCTAGTTCGGCCCCTGG 62.531 72.222 0.00 0.00 0.00 4.45
2016 4576 4.176752 GCTAGTTCGGCCCCTGGG 62.177 72.222 5.50 5.50 38.57 4.45
2018 4578 4.342086 TAGTTCGGCCCCTGGGGT 62.342 66.667 31.95 14.37 46.51 4.95
2029 4589 3.541713 CTGGGGTCGGCCTAGCTC 61.542 72.222 5.77 2.45 34.45 4.09
2031 4591 4.862823 GGGGTCGGCCTAGCTCCT 62.863 72.222 5.77 0.00 34.45 3.69
2032 4592 2.197875 GGGTCGGCCTAGCTCCTA 59.802 66.667 5.77 0.00 34.45 2.94
2033 4593 1.904378 GGGTCGGCCTAGCTCCTAG 60.904 68.421 5.77 0.00 34.16 3.02
2034 4594 1.152715 GGTCGGCCTAGCTCCTAGT 60.153 63.158 0.00 0.00 32.62 2.57
2035 4595 1.174078 GGTCGGCCTAGCTCCTAGTC 61.174 65.000 0.00 0.00 32.62 2.59
2036 4596 0.465824 GTCGGCCTAGCTCCTAGTCA 60.466 60.000 0.00 0.00 32.62 3.41
2037 4597 0.465824 TCGGCCTAGCTCCTAGTCAC 60.466 60.000 0.00 0.00 32.62 3.67
2038 4598 1.787057 CGGCCTAGCTCCTAGTCACG 61.787 65.000 0.00 0.00 32.62 4.35
2039 4599 1.360911 GCCTAGCTCCTAGTCACGC 59.639 63.158 0.00 0.00 32.62 5.34
2040 4600 2.034607 CCTAGCTCCTAGTCACGCC 58.965 63.158 0.00 0.00 32.62 5.68
2041 4601 0.466555 CCTAGCTCCTAGTCACGCCT 60.467 60.000 0.00 0.00 32.62 5.52
2042 4602 0.948678 CTAGCTCCTAGTCACGCCTC 59.051 60.000 0.00 0.00 30.16 4.70
2043 4603 0.465824 TAGCTCCTAGTCACGCCTCC 60.466 60.000 0.00 0.00 0.00 4.30
2044 4604 2.052690 GCTCCTAGTCACGCCTCCA 61.053 63.158 0.00 0.00 0.00 3.86
2045 4605 2.010582 GCTCCTAGTCACGCCTCCAG 62.011 65.000 0.00 0.00 0.00 3.86
2046 4606 2.010582 CTCCTAGTCACGCCTCCAGC 62.011 65.000 0.00 0.00 38.52 4.85
2047 4607 2.496817 CTAGTCACGCCTCCAGCC 59.503 66.667 0.00 0.00 38.78 4.85
2048 4608 3.417275 CTAGTCACGCCTCCAGCCG 62.417 68.421 0.00 0.00 38.78 5.52
2070 4630 2.037208 CCCCCAGCCACGGAAAAT 59.963 61.111 0.00 0.00 0.00 1.82
2071 4631 1.609210 CCCCCAGCCACGGAAAATT 60.609 57.895 0.00 0.00 0.00 1.82
2072 4632 1.604147 CCCCCAGCCACGGAAAATTC 61.604 60.000 0.00 0.00 0.00 2.17
2073 4633 0.897863 CCCCAGCCACGGAAAATTCA 60.898 55.000 0.00 0.00 0.00 2.57
2074 4634 0.965439 CCCAGCCACGGAAAATTCAA 59.035 50.000 0.00 0.00 0.00 2.69
2075 4635 1.342819 CCCAGCCACGGAAAATTCAAA 59.657 47.619 0.00 0.00 0.00 2.69
2076 4636 2.403259 CCAGCCACGGAAAATTCAAAC 58.597 47.619 0.00 0.00 0.00 2.93
2077 4637 2.223923 CCAGCCACGGAAAATTCAAACA 60.224 45.455 0.00 0.00 0.00 2.83
2078 4638 3.554752 CCAGCCACGGAAAATTCAAACAT 60.555 43.478 0.00 0.00 0.00 2.71
2079 4639 4.321601 CCAGCCACGGAAAATTCAAACATA 60.322 41.667 0.00 0.00 0.00 2.29
2080 4640 4.858692 CAGCCACGGAAAATTCAAACATAG 59.141 41.667 0.00 0.00 0.00 2.23
2081 4641 4.522789 AGCCACGGAAAATTCAAACATAGT 59.477 37.500 0.00 0.00 0.00 2.12
2082 4642 4.621034 GCCACGGAAAATTCAAACATAGTG 59.379 41.667 0.00 0.00 0.00 2.74
2083 4643 5.768317 CCACGGAAAATTCAAACATAGTGT 58.232 37.500 0.00 0.00 0.00 3.55
2084 4644 6.212955 CCACGGAAAATTCAAACATAGTGTT 58.787 36.000 0.00 0.00 43.41 3.32
2085 4645 6.362283 CCACGGAAAATTCAAACATAGTGTTC 59.638 38.462 0.00 0.00 40.14 3.18
2086 4646 6.362283 CACGGAAAATTCAAACATAGTGTTCC 59.638 38.462 0.00 0.00 40.14 3.62
2087 4647 5.861787 CGGAAAATTCAAACATAGTGTTCCC 59.138 40.000 0.00 0.00 40.14 3.97
2088 4648 5.861787 GGAAAATTCAAACATAGTGTTCCCG 59.138 40.000 0.00 0.00 40.14 5.14
2089 4649 4.434713 AATTCAAACATAGTGTTCCCGC 57.565 40.909 0.00 0.00 40.14 6.13
2090 4650 1.434555 TCAAACATAGTGTTCCCGCG 58.565 50.000 0.00 0.00 40.14 6.46
2091 4651 0.179200 CAAACATAGTGTTCCCGCGC 60.179 55.000 0.00 0.00 40.14 6.86
2092 4652 1.303091 AAACATAGTGTTCCCGCGCC 61.303 55.000 0.00 0.00 40.14 6.53
2093 4653 2.125310 CATAGTGTTCCCGCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
2094 4654 1.743623 CATAGTGTTCCCGCGCCAA 60.744 57.895 0.00 0.00 0.00 4.52
2095 4655 1.003112 ATAGTGTTCCCGCGCCAAA 60.003 52.632 0.00 0.00 0.00 3.28
2096 4656 0.606944 ATAGTGTTCCCGCGCCAAAA 60.607 50.000 0.00 0.00 0.00 2.44
2097 4657 0.818445 TAGTGTTCCCGCGCCAAAAA 60.818 50.000 0.00 0.00 0.00 1.94
2098 4658 1.006688 GTGTTCCCGCGCCAAAAAT 60.007 52.632 0.00 0.00 0.00 1.82
2099 4659 0.241481 GTGTTCCCGCGCCAAAAATA 59.759 50.000 0.00 0.00 0.00 1.40
2100 4660 0.959553 TGTTCCCGCGCCAAAAATAA 59.040 45.000 0.00 0.00 0.00 1.40
2101 4661 1.340248 TGTTCCCGCGCCAAAAATAAA 59.660 42.857 0.00 0.00 0.00 1.40
2102 4662 2.028930 TGTTCCCGCGCCAAAAATAAAT 60.029 40.909 0.00 0.00 0.00 1.40
2103 4663 2.285827 TCCCGCGCCAAAAATAAATG 57.714 45.000 0.00 0.00 0.00 2.32
2104 4664 0.649993 CCCGCGCCAAAAATAAATGC 59.350 50.000 0.00 0.00 0.00 3.56
2105 4665 0.649993 CCGCGCCAAAAATAAATGCC 59.350 50.000 0.00 0.00 0.00 4.40
2106 4666 1.354040 CGCGCCAAAAATAAATGCCA 58.646 45.000 0.00 0.00 0.00 4.92
2107 4667 1.060409 CGCGCCAAAAATAAATGCCAC 59.940 47.619 0.00 0.00 0.00 5.01
2108 4668 2.072298 GCGCCAAAAATAAATGCCACA 58.928 42.857 0.00 0.00 0.00 4.17
2109 4669 2.481952 GCGCCAAAAATAAATGCCACAA 59.518 40.909 0.00 0.00 0.00 3.33
2110 4670 3.126686 GCGCCAAAAATAAATGCCACAAT 59.873 39.130 0.00 0.00 0.00 2.71
2111 4671 4.727448 GCGCCAAAAATAAATGCCACAATC 60.727 41.667 0.00 0.00 0.00 2.67
2112 4672 4.201802 CGCCAAAAATAAATGCCACAATCC 60.202 41.667 0.00 0.00 0.00 3.01
2113 4673 4.201802 GCCAAAAATAAATGCCACAATCCG 60.202 41.667 0.00 0.00 0.00 4.18
2114 4674 4.332268 CCAAAAATAAATGCCACAATCCGG 59.668 41.667 0.00 0.00 0.00 5.14
2120 4680 2.513666 GCCACAATCCGGCGATCA 60.514 61.111 9.30 0.00 40.35 2.92
2121 4681 2.112198 GCCACAATCCGGCGATCAA 61.112 57.895 9.30 0.00 40.35 2.57
2122 4682 2.016961 CCACAATCCGGCGATCAAG 58.983 57.895 9.30 0.00 0.00 3.02
2123 4683 1.353103 CACAATCCGGCGATCAAGC 59.647 57.895 9.30 0.00 0.00 4.01
2124 4684 1.078497 ACAATCCGGCGATCAAGCA 60.078 52.632 9.30 0.00 39.27 3.91
2125 4685 0.464373 ACAATCCGGCGATCAAGCAT 60.464 50.000 9.30 0.00 39.27 3.79
2126 4686 0.236711 CAATCCGGCGATCAAGCATC 59.763 55.000 9.30 0.00 39.27 3.91
2127 4687 0.886490 AATCCGGCGATCAAGCATCC 60.886 55.000 9.30 0.00 39.27 3.51
2128 4688 2.043604 ATCCGGCGATCAAGCATCCA 62.044 55.000 9.30 0.00 39.27 3.41
2129 4689 2.249535 CCGGCGATCAAGCATCCAG 61.250 63.158 9.30 0.00 39.27 3.86
2130 4690 1.522355 CGGCGATCAAGCATCCAGT 60.522 57.895 0.00 0.00 39.27 4.00
2131 4691 0.249447 CGGCGATCAAGCATCCAGTA 60.249 55.000 0.00 0.00 39.27 2.74
2132 4692 1.506493 GGCGATCAAGCATCCAGTAG 58.494 55.000 0.00 0.00 39.27 2.57
2133 4693 1.069204 GGCGATCAAGCATCCAGTAGA 59.931 52.381 0.00 0.00 39.27 2.59
2134 4694 2.289320 GGCGATCAAGCATCCAGTAGAT 60.289 50.000 0.00 0.00 39.27 1.98
2135 4695 2.992543 GCGATCAAGCATCCAGTAGATC 59.007 50.000 0.00 0.00 37.05 2.75
2136 4696 3.240884 CGATCAAGCATCCAGTAGATCG 58.759 50.000 8.01 8.01 45.51 3.69
2137 4697 3.583806 GATCAAGCATCCAGTAGATCGG 58.416 50.000 0.00 0.00 30.59 4.18
2138 4698 1.069204 TCAAGCATCCAGTAGATCGGC 59.931 52.381 0.00 0.00 30.59 5.54
2139 4699 0.032678 AAGCATCCAGTAGATCGGCG 59.967 55.000 0.00 0.00 30.92 6.46
2140 4700 1.373497 GCATCCAGTAGATCGGCGG 60.373 63.158 7.21 0.00 30.59 6.13
2141 4701 1.373497 CATCCAGTAGATCGGCGGC 60.373 63.158 7.21 0.00 30.59 6.53
2142 4702 2.574955 ATCCAGTAGATCGGCGGCC 61.575 63.158 9.54 9.54 0.00 6.13
2152 4712 2.738521 CGGCGGCCGGATGAATAG 60.739 66.667 32.80 1.55 44.15 1.73
2153 4713 2.426023 GGCGGCCGGATGAATAGT 59.574 61.111 29.38 0.00 0.00 2.12
2154 4714 1.227853 GGCGGCCGGATGAATAGTT 60.228 57.895 29.38 0.00 0.00 2.24
2155 4715 1.228657 GGCGGCCGGATGAATAGTTC 61.229 60.000 29.38 4.68 0.00 3.01
2156 4716 1.557443 GCGGCCGGATGAATAGTTCG 61.557 60.000 29.38 0.00 0.00 3.95
2157 4717 0.944311 CGGCCGGATGAATAGTTCGG 60.944 60.000 20.10 0.00 43.13 4.30
2159 4719 3.678921 CCGGATGAATAGTTCGGCA 57.321 52.632 0.00 0.00 34.17 5.69
2160 4720 2.169832 CCGGATGAATAGTTCGGCAT 57.830 50.000 0.00 0.00 34.17 4.40
2161 4721 3.313012 CCGGATGAATAGTTCGGCATA 57.687 47.619 0.00 0.00 34.17 3.14
2162 4722 2.993899 CCGGATGAATAGTTCGGCATAC 59.006 50.000 0.00 0.00 34.17 2.39
2163 4723 3.554129 CCGGATGAATAGTTCGGCATACA 60.554 47.826 0.00 0.00 34.17 2.29
2164 4724 4.055360 CGGATGAATAGTTCGGCATACAA 58.945 43.478 0.00 0.00 0.00 2.41
2165 4725 4.509970 CGGATGAATAGTTCGGCATACAAA 59.490 41.667 0.00 0.00 0.00 2.83
2166 4726 5.007234 CGGATGAATAGTTCGGCATACAAAA 59.993 40.000 0.00 0.00 0.00 2.44
2167 4727 6.457663 CGGATGAATAGTTCGGCATACAAAAA 60.458 38.462 0.00 0.00 0.00 1.94
2168 4728 6.912591 GGATGAATAGTTCGGCATACAAAAAG 59.087 38.462 0.00 0.00 0.00 2.27
2169 4729 5.636837 TGAATAGTTCGGCATACAAAAAGC 58.363 37.500 0.00 0.00 0.00 3.51
2170 4730 5.182190 TGAATAGTTCGGCATACAAAAAGCA 59.818 36.000 0.00 0.00 0.00 3.91
2171 4731 3.559238 AGTTCGGCATACAAAAAGCAG 57.441 42.857 0.00 0.00 0.00 4.24
2172 4732 3.146066 AGTTCGGCATACAAAAAGCAGA 58.854 40.909 0.00 0.00 0.00 4.26
2173 4733 3.568007 AGTTCGGCATACAAAAAGCAGAA 59.432 39.130 0.00 0.00 39.48 3.02
2174 4734 4.037446 AGTTCGGCATACAAAAAGCAGAAA 59.963 37.500 0.00 0.00 42.36 2.52
2175 4735 4.576216 TCGGCATACAAAAAGCAGAAAA 57.424 36.364 0.00 0.00 29.85 2.29
2176 4736 4.545610 TCGGCATACAAAAAGCAGAAAAG 58.454 39.130 0.00 0.00 29.85 2.27
2177 4737 3.674753 CGGCATACAAAAAGCAGAAAAGG 59.325 43.478 0.00 0.00 0.00 3.11
2178 4738 3.996363 GGCATACAAAAAGCAGAAAAGGG 59.004 43.478 0.00 0.00 0.00 3.95
2179 4739 4.262420 GGCATACAAAAAGCAGAAAAGGGA 60.262 41.667 0.00 0.00 0.00 4.20
2180 4740 4.925646 GCATACAAAAAGCAGAAAAGGGAG 59.074 41.667 0.00 0.00 0.00 4.30
2181 4741 5.473039 CATACAAAAAGCAGAAAAGGGAGG 58.527 41.667 0.00 0.00 0.00 4.30
2182 4742 3.642141 ACAAAAAGCAGAAAAGGGAGGA 58.358 40.909 0.00 0.00 0.00 3.71
2183 4743 4.030216 ACAAAAAGCAGAAAAGGGAGGAA 58.970 39.130 0.00 0.00 0.00 3.36
2184 4744 4.100035 ACAAAAAGCAGAAAAGGGAGGAAG 59.900 41.667 0.00 0.00 0.00 3.46
2185 4745 1.916506 AAGCAGAAAAGGGAGGAAGC 58.083 50.000 0.00 0.00 0.00 3.86
2186 4746 0.322008 AGCAGAAAAGGGAGGAAGCG 60.322 55.000 0.00 0.00 0.00 4.68
2187 4747 1.927608 GCAGAAAAGGGAGGAAGCGC 61.928 60.000 0.00 0.00 0.00 5.92
2188 4748 1.376037 AGAAAAGGGAGGAAGCGCG 60.376 57.895 0.00 0.00 0.00 6.86
2189 4749 3.040414 GAAAAGGGAGGAAGCGCGC 62.040 63.158 26.66 26.66 0.00 6.86
2190 4750 3.842925 AAAAGGGAGGAAGCGCGCA 62.843 57.895 35.10 0.00 0.00 6.09
2191 4751 3.628646 AAAGGGAGGAAGCGCGCAT 62.629 57.895 35.10 24.08 0.00 4.73
2192 4752 4.537433 AGGGAGGAAGCGCGCATC 62.537 66.667 35.10 30.80 0.00 3.91
2193 4753 4.838152 GGGAGGAAGCGCGCATCA 62.838 66.667 33.66 0.00 0.00 3.07
2194 4754 3.267860 GGAGGAAGCGCGCATCAG 61.268 66.667 33.66 0.00 0.00 2.90
2195 4755 3.267860 GAGGAAGCGCGCATCAGG 61.268 66.667 33.66 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.389817 TGGGCGAACTGATGAAGTCG 60.390 55.000 0.00 0.00 38.56 4.18
26 27 6.809196 TGATATCGTTTACAAAAATGTTGGGC 59.191 34.615 0.00 0.00 33.95 5.36
27 28 8.026607 AGTGATATCGTTTACAAAAATGTTGGG 58.973 33.333 0.00 0.00 33.95 4.12
29 30 8.775884 CGAGTGATATCGTTTACAAAAATGTTG 58.224 33.333 0.00 0.00 37.91 3.33
30 31 7.480542 GCGAGTGATATCGTTTACAAAAATGTT 59.519 33.333 0.00 0.00 44.53 2.71
31 32 6.959311 GCGAGTGATATCGTTTACAAAAATGT 59.041 34.615 0.00 0.00 44.53 2.71
32 33 6.958752 TGCGAGTGATATCGTTTACAAAAATG 59.041 34.615 0.00 0.00 44.53 2.32
33 34 7.067532 TGCGAGTGATATCGTTTACAAAAAT 57.932 32.000 0.00 0.00 44.53 1.82
34 35 6.469139 TGCGAGTGATATCGTTTACAAAAA 57.531 33.333 0.00 0.00 44.53 1.94
35 36 5.445407 GCTGCGAGTGATATCGTTTACAAAA 60.445 40.000 0.00 0.00 44.53 2.44
36 37 4.032445 GCTGCGAGTGATATCGTTTACAAA 59.968 41.667 0.00 0.00 44.53 2.83
37 38 3.550275 GCTGCGAGTGATATCGTTTACAA 59.450 43.478 0.00 0.00 44.53 2.41
38 39 3.113322 GCTGCGAGTGATATCGTTTACA 58.887 45.455 0.00 0.00 44.53 2.41
77 79 3.664798 CGATCTCGTTCGAGGTACATAGC 60.665 52.174 19.65 3.99 41.62 2.97
111 117 9.950680 AATAAATAAACTAGTTCATTGCCATCG 57.049 29.630 8.95 0.00 0.00 3.84
139 147 3.307762 CCACTCTCCTTCTAGGGGTTTTG 60.308 52.174 0.00 0.00 37.09 2.44
267 281 0.681733 AGCATCAGACCAACTCGTGT 59.318 50.000 0.00 0.00 0.00 4.49
379 393 2.103042 GCTGCTTCTGATCCGCGTT 61.103 57.895 4.92 0.00 0.00 4.84
1263 1289 4.655649 TCATTCTTAGCTTGCTCCTCCATA 59.344 41.667 0.00 0.00 0.00 2.74
1294 1320 2.959707 AGCCTCCAAGATCTACTTACCG 59.040 50.000 0.00 0.00 37.03 4.02
1350 1376 1.078708 ATTGCAACCCTACGACCCG 60.079 57.895 0.00 0.00 0.00 5.28
1375 1401 2.374170 ACCCACTAAACTAACCACCAGG 59.626 50.000 0.00 0.00 42.21 4.45
1404 1430 7.495606 CAGCAAAAAGACCCTAAAACTTTTGAT 59.504 33.333 8.77 0.50 41.09 2.57
1405 1431 6.816140 CAGCAAAAAGACCCTAAAACTTTTGA 59.184 34.615 8.77 0.00 41.09 2.69
1596 4122 9.972106 TGGGCATCCTGATTTTATTTTTAATTT 57.028 25.926 0.00 0.00 0.00 1.82
1598 4124 9.783081 GATGGGCATCCTGATTTTATTTTTAAT 57.217 29.630 0.00 0.00 31.76 1.40
1659 4205 4.958509 ACCACTCATGAGATTGCTAGATG 58.041 43.478 29.27 12.77 0.00 2.90
1714 4265 5.560722 TCTACTTGTGGAGATTGGAAACA 57.439 39.130 0.00 0.00 39.83 2.83
1732 4283 8.982685 CAATATATGCGGATTGTATGGATCTAC 58.017 37.037 0.00 0.00 0.00 2.59
1760 4311 0.403271 ATTGGTGGACAGAAGCTGCT 59.597 50.000 0.00 0.00 34.37 4.24
1793 4344 5.782047 TCCTTGAAAGTTGTTAATGCATGG 58.218 37.500 0.00 0.00 0.00 3.66
1829 4380 4.466828 CAGCATTCACTCGGTTTTAGTTG 58.533 43.478 0.00 0.00 0.00 3.16
1831 4382 2.484264 GCAGCATTCACTCGGTTTTAGT 59.516 45.455 0.00 0.00 0.00 2.24
1832 4383 2.159517 GGCAGCATTCACTCGGTTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
1833 4384 1.810151 GGCAGCATTCACTCGGTTTTA 59.190 47.619 0.00 0.00 0.00 1.52
1834 4385 0.598065 GGCAGCATTCACTCGGTTTT 59.402 50.000 0.00 0.00 0.00 2.43
1856 4414 5.266242 GCGAGCTATGAAACATGGTTTTAG 58.734 41.667 0.00 3.83 0.00 1.85
1857 4415 4.095782 GGCGAGCTATGAAACATGGTTTTA 59.904 41.667 0.00 0.00 0.00 1.52
1861 4421 1.065491 TGGCGAGCTATGAAACATGGT 60.065 47.619 0.00 0.00 0.00 3.55
1863 4423 1.600957 CCTGGCGAGCTATGAAACATG 59.399 52.381 0.00 0.00 0.00 3.21
1878 4438 1.379044 CCTCCCATCACAACCTGGC 60.379 63.158 0.00 0.00 0.00 4.85
1936 4496 1.519719 GAACGGCTGGAGATGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
1937 4497 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
1938 4498 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
1939 4499 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
1960 4520 4.050934 GTTTTTCGGCGCCCTGGG 62.051 66.667 23.46 8.86 0.00 4.45
1961 4521 2.983592 AGTTTTTCGGCGCCCTGG 60.984 61.111 23.46 7.26 0.00 4.45
1962 4522 2.255252 CAGTTTTTCGGCGCCCTG 59.745 61.111 23.46 17.24 0.00 4.45
1963 4523 3.670377 GCAGTTTTTCGGCGCCCT 61.670 61.111 23.46 8.01 0.00 5.19
1970 4530 2.255252 CCAGGCCGCAGTTTTTCG 59.745 61.111 0.00 0.00 0.00 3.46
1971 4531 2.650778 CCCAGGCCGCAGTTTTTC 59.349 61.111 0.00 0.00 0.00 2.29
1972 4532 2.917227 CCCCAGGCCGCAGTTTTT 60.917 61.111 0.00 0.00 0.00 1.94
1998 4558 4.530857 CCAGGGGCCGAACTAGCG 62.531 72.222 0.00 0.00 0.00 4.26
1999 4559 4.176752 CCCAGGGGCCGAACTAGC 62.177 72.222 0.00 0.00 0.00 3.42
2000 4560 3.480133 CCCCAGGGGCCGAACTAG 61.480 72.222 13.35 0.00 35.35 2.57
2012 4572 3.541713 GAGCTAGGCCGACCCCAG 61.542 72.222 0.00 0.00 36.11 4.45
2014 4574 3.447933 TAGGAGCTAGGCCGACCCC 62.448 68.421 0.00 0.00 36.11 4.95
2015 4575 1.904378 CTAGGAGCTAGGCCGACCC 60.904 68.421 0.00 0.00 36.11 4.46
2016 4576 1.152715 ACTAGGAGCTAGGCCGACC 60.153 63.158 0.00 0.00 38.30 4.79
2017 4577 0.465824 TGACTAGGAGCTAGGCCGAC 60.466 60.000 0.00 0.00 41.15 4.79
2018 4578 0.465824 GTGACTAGGAGCTAGGCCGA 60.466 60.000 0.00 0.00 41.15 5.54
2019 4579 1.787057 CGTGACTAGGAGCTAGGCCG 61.787 65.000 0.00 0.00 41.15 6.13
2020 4580 2.034607 CGTGACTAGGAGCTAGGCC 58.965 63.158 0.00 0.00 41.15 5.19
2021 4581 1.360911 GCGTGACTAGGAGCTAGGC 59.639 63.158 0.00 0.00 42.13 3.93
2022 4582 0.466555 AGGCGTGACTAGGAGCTAGG 60.467 60.000 0.00 0.00 38.30 3.02
2023 4583 0.948678 GAGGCGTGACTAGGAGCTAG 59.051 60.000 0.00 0.00 39.72 3.42
2024 4584 0.465824 GGAGGCGTGACTAGGAGCTA 60.466 60.000 0.00 0.00 0.00 3.32
2025 4585 1.755008 GGAGGCGTGACTAGGAGCT 60.755 63.158 0.00 0.00 0.00 4.09
2026 4586 2.010582 CTGGAGGCGTGACTAGGAGC 62.011 65.000 0.00 0.00 0.00 4.70
2027 4587 2.010582 GCTGGAGGCGTGACTAGGAG 62.011 65.000 0.00 0.00 0.00 3.69
2028 4588 2.052690 GCTGGAGGCGTGACTAGGA 61.053 63.158 0.00 0.00 0.00 2.94
2029 4589 2.496817 GCTGGAGGCGTGACTAGG 59.503 66.667 0.00 0.00 0.00 3.02
2030 4590 2.496817 GGCTGGAGGCGTGACTAG 59.503 66.667 0.00 0.00 42.94 2.57
2053 4613 1.604147 GAATTTTCCGTGGCTGGGGG 61.604 60.000 0.00 0.00 0.00 5.40
2054 4614 0.897863 TGAATTTTCCGTGGCTGGGG 60.898 55.000 0.00 0.00 0.00 4.96
2055 4615 0.965439 TTGAATTTTCCGTGGCTGGG 59.035 50.000 0.00 0.00 0.00 4.45
2056 4616 2.223923 TGTTTGAATTTTCCGTGGCTGG 60.224 45.455 0.00 0.00 0.00 4.85
2057 4617 3.090952 TGTTTGAATTTTCCGTGGCTG 57.909 42.857 0.00 0.00 0.00 4.85
2058 4618 4.522789 ACTATGTTTGAATTTTCCGTGGCT 59.477 37.500 0.00 0.00 0.00 4.75
2059 4619 4.621034 CACTATGTTTGAATTTTCCGTGGC 59.379 41.667 0.00 0.00 0.00 5.01
2060 4620 5.768317 ACACTATGTTTGAATTTTCCGTGG 58.232 37.500 0.00 0.00 0.00 4.94
2061 4621 6.362283 GGAACACTATGTTTGAATTTTCCGTG 59.638 38.462 0.00 0.00 41.28 4.94
2062 4622 6.443792 GGAACACTATGTTTGAATTTTCCGT 58.556 36.000 0.00 0.00 41.28 4.69
2063 4623 5.861787 GGGAACACTATGTTTGAATTTTCCG 59.138 40.000 0.00 0.00 41.28 4.30
2064 4624 5.861787 CGGGAACACTATGTTTGAATTTTCC 59.138 40.000 0.00 0.00 41.28 3.13
2065 4625 5.344933 GCGGGAACACTATGTTTGAATTTTC 59.655 40.000 0.00 0.00 41.28 2.29
2066 4626 5.227152 GCGGGAACACTATGTTTGAATTTT 58.773 37.500 0.00 0.00 41.28 1.82
2067 4627 4.614993 CGCGGGAACACTATGTTTGAATTT 60.615 41.667 0.00 0.00 41.28 1.82
2068 4628 3.119990 CGCGGGAACACTATGTTTGAATT 60.120 43.478 0.00 0.00 41.28 2.17
2069 4629 2.418628 CGCGGGAACACTATGTTTGAAT 59.581 45.455 0.00 0.00 41.28 2.57
2070 4630 1.801771 CGCGGGAACACTATGTTTGAA 59.198 47.619 0.00 0.00 41.28 2.69
2071 4631 1.434555 CGCGGGAACACTATGTTTGA 58.565 50.000 0.00 0.00 41.28 2.69
2072 4632 0.179200 GCGCGGGAACACTATGTTTG 60.179 55.000 8.83 0.00 41.28 2.93
2073 4633 1.303091 GGCGCGGGAACACTATGTTT 61.303 55.000 8.83 0.00 41.28 2.83
2074 4634 1.743995 GGCGCGGGAACACTATGTT 60.744 57.895 8.83 0.00 44.37 2.71
2075 4635 2.125269 GGCGCGGGAACACTATGT 60.125 61.111 8.83 0.00 0.00 2.29
2076 4636 1.302383 TTTGGCGCGGGAACACTATG 61.302 55.000 8.83 0.00 0.00 2.23
2077 4637 0.606944 TTTTGGCGCGGGAACACTAT 60.607 50.000 8.83 0.00 0.00 2.12
2078 4638 0.818445 TTTTTGGCGCGGGAACACTA 60.818 50.000 8.83 0.00 0.00 2.74
2079 4639 1.460273 ATTTTTGGCGCGGGAACACT 61.460 50.000 8.83 0.00 0.00 3.55
2080 4640 0.241481 TATTTTTGGCGCGGGAACAC 59.759 50.000 8.83 0.00 0.00 3.32
2081 4641 0.959553 TTATTTTTGGCGCGGGAACA 59.040 45.000 8.83 0.00 0.00 3.18
2082 4642 2.067414 TTTATTTTTGGCGCGGGAAC 57.933 45.000 8.83 0.00 0.00 3.62
2083 4643 2.611518 CATTTATTTTTGGCGCGGGAA 58.388 42.857 8.83 0.00 0.00 3.97
2084 4644 1.737363 GCATTTATTTTTGGCGCGGGA 60.737 47.619 8.83 0.00 0.00 5.14
2085 4645 0.649993 GCATTTATTTTTGGCGCGGG 59.350 50.000 8.83 0.00 0.00 6.13
2086 4646 0.649993 GGCATTTATTTTTGGCGCGG 59.350 50.000 8.83 0.00 0.00 6.46
2087 4647 1.060409 GTGGCATTTATTTTTGGCGCG 59.940 47.619 0.00 0.00 41.00 6.86
2088 4648 2.072298 TGTGGCATTTATTTTTGGCGC 58.928 42.857 0.00 0.00 45.86 6.53
2089 4649 4.201802 GGATTGTGGCATTTATTTTTGGCG 60.202 41.667 0.00 0.00 41.00 5.69
2090 4650 4.201802 CGGATTGTGGCATTTATTTTTGGC 60.202 41.667 0.00 0.00 38.77 4.52
2091 4651 4.332268 CCGGATTGTGGCATTTATTTTTGG 59.668 41.667 0.00 0.00 0.00 3.28
2092 4652 5.467902 CCGGATTGTGGCATTTATTTTTG 57.532 39.130 0.00 0.00 0.00 2.44
2104 4664 2.016961 CTTGATCGCCGGATTGTGG 58.983 57.895 5.05 0.00 31.51 4.17
2105 4665 1.353103 GCTTGATCGCCGGATTGTG 59.647 57.895 5.05 0.00 31.51 3.33
2106 4666 0.464373 ATGCTTGATCGCCGGATTGT 60.464 50.000 5.05 0.00 31.51 2.71
2107 4667 0.236711 GATGCTTGATCGCCGGATTG 59.763 55.000 5.05 0.00 31.51 2.67
2108 4668 0.886490 GGATGCTTGATCGCCGGATT 60.886 55.000 5.05 0.00 31.51 3.01
2109 4669 1.302033 GGATGCTTGATCGCCGGAT 60.302 57.895 5.05 0.00 34.96 4.18
2110 4670 2.108976 GGATGCTTGATCGCCGGA 59.891 61.111 5.05 0.00 30.87 5.14
2111 4671 2.203056 TGGATGCTTGATCGCCGG 60.203 61.111 0.00 0.00 30.87 6.13
2112 4672 0.249447 TACTGGATGCTTGATCGCCG 60.249 55.000 0.00 0.00 30.87 6.46
2113 4673 1.069204 TCTACTGGATGCTTGATCGCC 59.931 52.381 0.00 0.00 30.87 5.54
2114 4674 2.515926 TCTACTGGATGCTTGATCGC 57.484 50.000 0.00 0.00 30.87 4.58
2115 4675 3.240884 CGATCTACTGGATGCTTGATCG 58.759 50.000 8.41 8.41 44.13 3.69
2116 4676 3.583806 CCGATCTACTGGATGCTTGATC 58.416 50.000 0.00 0.00 34.33 2.92
2117 4677 2.289320 GCCGATCTACTGGATGCTTGAT 60.289 50.000 0.00 0.00 34.33 2.57
2118 4678 1.069204 GCCGATCTACTGGATGCTTGA 59.931 52.381 0.00 0.00 34.33 3.02
2119 4679 1.506493 GCCGATCTACTGGATGCTTG 58.494 55.000 0.00 0.00 34.33 4.01
2120 4680 0.032678 CGCCGATCTACTGGATGCTT 59.967 55.000 0.00 0.00 34.33 3.91
2121 4681 1.662608 CGCCGATCTACTGGATGCT 59.337 57.895 0.00 0.00 34.33 3.79
2122 4682 1.373497 CCGCCGATCTACTGGATGC 60.373 63.158 0.00 0.00 34.33 3.91
2123 4683 1.373497 GCCGCCGATCTACTGGATG 60.373 63.158 0.00 0.00 34.33 3.51
2124 4684 2.574955 GGCCGCCGATCTACTGGAT 61.575 63.158 0.00 0.00 37.37 3.41
2125 4685 3.224324 GGCCGCCGATCTACTGGA 61.224 66.667 0.00 0.00 0.00 3.86
2136 4696 1.227853 AACTATTCATCCGGCCGCC 60.228 57.895 22.85 0.00 0.00 6.13
2137 4697 1.557443 CGAACTATTCATCCGGCCGC 61.557 60.000 22.85 0.00 0.00 6.53
2138 4698 0.944311 CCGAACTATTCATCCGGCCG 60.944 60.000 21.04 21.04 33.47 6.13
2139 4699 2.914379 CCGAACTATTCATCCGGCC 58.086 57.895 0.00 0.00 33.47 6.13
2141 4701 2.169832 ATGCCGAACTATTCATCCGG 57.830 50.000 0.00 0.00 42.74 5.14
2142 4702 3.649073 TGTATGCCGAACTATTCATCCG 58.351 45.455 0.00 0.00 0.00 4.18
2143 4703 6.371809 TTTTGTATGCCGAACTATTCATCC 57.628 37.500 0.00 0.00 0.00 3.51
2144 4704 6.414987 GCTTTTTGTATGCCGAACTATTCATC 59.585 38.462 0.00 0.00 0.00 2.92
2145 4705 6.127758 TGCTTTTTGTATGCCGAACTATTCAT 60.128 34.615 0.00 0.00 0.00 2.57
2146 4706 5.182190 TGCTTTTTGTATGCCGAACTATTCA 59.818 36.000 0.00 0.00 0.00 2.57
2147 4707 5.636837 TGCTTTTTGTATGCCGAACTATTC 58.363 37.500 0.00 0.00 0.00 1.75
2148 4708 5.414454 TCTGCTTTTTGTATGCCGAACTATT 59.586 36.000 0.00 0.00 0.00 1.73
2149 4709 4.941263 TCTGCTTTTTGTATGCCGAACTAT 59.059 37.500 0.00 0.00 0.00 2.12
2150 4710 4.320023 TCTGCTTTTTGTATGCCGAACTA 58.680 39.130 0.00 0.00 0.00 2.24
2151 4711 3.146066 TCTGCTTTTTGTATGCCGAACT 58.854 40.909 0.00 0.00 0.00 3.01
2152 4712 3.552604 TCTGCTTTTTGTATGCCGAAC 57.447 42.857 0.00 0.00 0.00 3.95
2153 4713 4.576216 TTTCTGCTTTTTGTATGCCGAA 57.424 36.364 0.00 0.00 31.44 4.30
2154 4714 4.545610 CTTTTCTGCTTTTTGTATGCCGA 58.454 39.130 0.00 0.00 0.00 5.54
2155 4715 3.674753 CCTTTTCTGCTTTTTGTATGCCG 59.325 43.478 0.00 0.00 0.00 5.69
2156 4716 3.996363 CCCTTTTCTGCTTTTTGTATGCC 59.004 43.478 0.00 0.00 0.00 4.40
2157 4717 4.881920 TCCCTTTTCTGCTTTTTGTATGC 58.118 39.130 0.00 0.00 0.00 3.14
2158 4718 5.243730 TCCTCCCTTTTCTGCTTTTTGTATG 59.756 40.000 0.00 0.00 0.00 2.39
2159 4719 5.393866 TCCTCCCTTTTCTGCTTTTTGTAT 58.606 37.500 0.00 0.00 0.00 2.29
2160 4720 4.798882 TCCTCCCTTTTCTGCTTTTTGTA 58.201 39.130 0.00 0.00 0.00 2.41
2161 4721 3.642141 TCCTCCCTTTTCTGCTTTTTGT 58.358 40.909 0.00 0.00 0.00 2.83
2162 4722 4.625028 CTTCCTCCCTTTTCTGCTTTTTG 58.375 43.478 0.00 0.00 0.00 2.44
2163 4723 3.070159 GCTTCCTCCCTTTTCTGCTTTTT 59.930 43.478 0.00 0.00 0.00 1.94
2164 4724 2.630098 GCTTCCTCCCTTTTCTGCTTTT 59.370 45.455 0.00 0.00 0.00 2.27
2165 4725 2.242926 GCTTCCTCCCTTTTCTGCTTT 58.757 47.619 0.00 0.00 0.00 3.51
2166 4726 1.884067 CGCTTCCTCCCTTTTCTGCTT 60.884 52.381 0.00 0.00 0.00 3.91
2167 4727 0.322008 CGCTTCCTCCCTTTTCTGCT 60.322 55.000 0.00 0.00 0.00 4.24
2168 4728 1.927608 GCGCTTCCTCCCTTTTCTGC 61.928 60.000 0.00 0.00 0.00 4.26
2169 4729 1.639298 CGCGCTTCCTCCCTTTTCTG 61.639 60.000 5.56 0.00 0.00 3.02
2170 4730 1.376037 CGCGCTTCCTCCCTTTTCT 60.376 57.895 5.56 0.00 0.00 2.52
2171 4731 3.040414 GCGCGCTTCCTCCCTTTTC 62.040 63.158 26.67 0.00 0.00 2.29
2172 4732 3.056328 GCGCGCTTCCTCCCTTTT 61.056 61.111 26.67 0.00 0.00 2.27
2173 4733 3.628646 ATGCGCGCTTCCTCCCTTT 62.629 57.895 33.29 0.93 0.00 3.11
2174 4734 4.101448 ATGCGCGCTTCCTCCCTT 62.101 61.111 33.29 2.56 0.00 3.95
2175 4735 4.537433 GATGCGCGCTTCCTCCCT 62.537 66.667 33.29 6.19 0.00 4.20
2176 4736 4.838152 TGATGCGCGCTTCCTCCC 62.838 66.667 34.98 17.60 0.00 4.30
2177 4737 3.267860 CTGATGCGCGCTTCCTCC 61.268 66.667 34.98 17.93 0.00 4.30
2178 4738 3.267860 CCTGATGCGCGCTTCCTC 61.268 66.667 34.98 24.25 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.