>input_sequence_86963
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--------------------------------------------------------------ATGGGGTTCCGGCCGCCG
TGCCGGTCCGAGTGCGTCCTGTGCGTCGGCGTCCTCGGGTCGCCGCCGGAGATGGACACCACCGCGTACACGCGCATCTT
GGAGAACACCGTCACCTTCTTCAGGTCCTTGGCCGAGATCAGCGTCACCTCCAGCACCCGGTACGCCATGATCGCGCCGC
GCGCTCGCAGGAGCCCGTTGTGA---------------------------------------------------------
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>chr1B_1_TraesCS1B01G116600
CTGATAAAGCTCGACTTCATCAGTTCGCCCAACATTTTTGTAAACGATATCACTCGCAGCATCACTGCAAAACTCT-GGC
TATGTACCTCGAACGAGATCGCCGGGATGGGC----CGATGGCAATGAA-CT-AGTTTATTTATTGCAAAACCCCTAGAA
GGAGAGTGGCGACTGCGTCGAAGGCGTGGATCATTTTCACGTAGC------CACAACTCACAAGCAGTTTCTCTGAGGAG
CAAAAGAAAATCGCAACGCACTTTCCATAGGCGCGCGCACACACGAGTTGGTCTGATGCTTCGAAGGGATCCAGCAGCAC
TGTGATTGGCCAACGTACTACGTGTTCTAAGTGAGCCGTGCGTGTATGCATGCATGCATGCAAGACGCGTCGAACGCGGA
TCAGAAGCAGCCGTCCAGGCTCATCTCCGAGTCGGCGATGATCTCGCCCACGCCCTCGCCGAGGCCCATCATCATCCCGC
CGACCGCCGCGCCGAGGAGCCCCATCCCGAACCCGGAGCCCATCCCGACGCCTCCGTCTTGCCTGGCCGCCGCGGCGGAC
GACGCGCCGTACCCGTAGGGAGCGG---------GGCCGTAGCCGTACGACGCCCCCGCGTACCCGTATGGGGGGTTGTA
GCCGTACGGAGGCACGGCGTGCTGCTGGTGGTGGTACGGCGGGTACGCGGTCACCGCGTCGGCGCCGGCCTTGGCCGCCG
CGTTCGTCTGCATGTACTGCGCGTCGCCCGGCGCCGCCGCCGTCGGCGCAGGCGCGTCGGAGAGGCTGTAGGAGATGTGG
AGCACGCCGCGCTTCCGCCCGCTCATGGGGCTGCGCACCTGGTAGCTGAGGTGCCGGTGCTCGCCGGCGGGTGGCGCGAC
GGCGACGAGGTCCTGCACCGGCACCACCACCTCGCCGACGTCGCGGTCGCCGAAGGAGCGCTCGGCGCGGAGGAGCACGT
GCAGCGCCAGCCCCCGCGGGTCGGCGGCGGCCGGGATGGGGAACCGCAGCGGCGCGTGCCACATGGGGTTCCGGCCGCCG
TGCCGGTCCGAGTGCGTCCTGTGCGTCGGCGTCCTCGGGTCGCCGCCGGAGATGGACACCACCGCGTACACGCGCATCTT
GGAGAACACCGTCACCTTCTTCAGGTCCTTGGCCGAGATCAGCGTCACCTCCAGCACCCGGTACGCCATGATCGCGCCGC
GCGCTCGCAGGAGCCCGTTGTGATCACTCTGTCGATATTTCGGTTGTGTGATCGGGAGACGATGATTTGTGGAAGACGA-
--TGGACGTATGGAGGAGCAAGCTAAGAATGATTCTCAACGGTAAGTAGATCTTGGAGGCTACGAATGATCCAAGGGAGA
TGGCTAGTGACGGTTCGGGTCGTAGGGTTGCAATGTTTGGCCTGGTGGTTAGTTTAGTGGGTAATTTTGATCAAAAGTTT
TAGGG-TCTTTTTGCTGGAAGACCTAATAATAGCATGGGTTGTGTTAATTTAAGCTTTTGCTAATTGTGTGGTGACCCGT
TCATGTCGGTAGCTTAACAACATTGGTGTTTTTGGTCCAAGTTTTTTTA-------------------------------
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---------------------------------TGGAACGCCATCAT---------------------------------
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--GGCTACCTTATTGATCTCAAATTAACACTTAGAGAGTTAAAA-------------------TTAAAAATAAAATCAGG
ATGCCCATCCATCCAATTACAAGAAAGCTTACTCTCAAAACAA-CATCTAGCAATCTCATGAGTGGTACGATTTTTGCTT
CACATAAACAATGTTTAAA-----TGTTTCCAATCTCCACAAGTAGATCCATACAATCCGCATATATTGCAGCAGCTTCT
GTCCACCAATAGTTTGTTCATGTCCATGCATTAACAACTTTCAAGGAGTTTGATTCTGCCAACTA-------AAACCGAG
TGAATGCTGCCAACT--AAAACCATGTTTCATAGCTCGCCAGGTTGTGATGGGAGGAAAACTATCACCATGAGTTGCATG
TCTGCAAACCCACCAAGAGCATCTCCAGCCGTTCGGCCCCCCAGGGCGCCGAAAAACTGCGGCCTGGGGCGAGCCGGCGC
TAGTTCGGCCCCTGGGGTCGGCCTAGCTCCTAGTCACGCCTCCAGCCGCCGCCCCCCAGCCACGGAAAATTCAAACATAG
TGTTCCCGCGCCAAAAATAAATGCCACAATCCGGCGATCAAGCATCCAGTAGATCGGCGGCCGGATGAATAGTTCGGCAT
ACAAAAAGCAGAAAAGGGAGGAAGCGCGCATCAGGCGTCG
>chr1D_1
CTGATAAAACT-GACTTCAACAGTTCAACATTTC-----GTAAACGATATCATTCGCAGCATCACTGCAAAACTCT-G-C
TATGTACCTCGAACGAGATTGCCGGGATAGGC----GGATGGCAATGAAGCT-AGTTTATTTATTGGAAAACCCCTAGAA
GGAGAGTGGCGACTGCGTCGAAGGCGTGGATCATTTTCACGTAGC------CACAACTCACAAGCAGTTTCTCTGAGGAG
CAAAAGAAAATCTCAAC-------------GCGCGCACACGTACGAGTTGGTCTGATGCTTCGAAGAGATCGAGCAGCAC
TGTGATTGGCCAACATACTACGTGTTCTAAGTGAGCCGTGCGTGTATGCATGCATGCATGCAAGACGCGTCGGACGCGGA
TCAGAAGCAGCCGTCCAGGCTCATGTCCGAGTCGGCGATGATCTCGCCCACGCCCTCGCCGAGGCCCATCATCATCCCGC
CGACCGCCGCGCCGAGGAGCCCCATCCCGAACCCGGAGCCCATCCCGACGCCTCCGTCTTGCCTGGCCGCCGCGGCGGAC
GACGCGCCGTACCCGTAGGGAGCGGCCGCGGCGGGGCCGTAGCCGTACGACGCCCCCGCGTACCCGTACGGGGGGTTGTA
GCCGTAGGGCGGCACGGCGTGCTGCTGGTGGTGGTACGGCGGGTACGCGGTCACCCGGTCGGCGCCGGCCTTGGCCGCCG
CGTTCGTCTGCATGTACTGCGCGTCGCCCGGCGCCGCCGCCGTCGGCGCAGGCGCGTCGGAGAGGCTGTAGGAGATGTGG
AGCACGCCGCGCTTCCGCCCGCTCATCGGGCTGCGCACCTGGTAGCTGAGGTGCCGGTGCTCGCCGGCGGGTGGTGCGAC
GGCGACGAGGTCCTGCACCGGCACCACCACCTCGCCGACGTCGCGGTCGCCGAAGGAGCGCTCGGCGCGGAGGAGCACGT
GCAGCGCCAGCCCCCGCGGGTCGGCGGCGGTCGGGATGGGGAACCGCAGCGGCGCGTGCCACATGGGGTTCCGGCCGCCG
TGCCGGTCCGAGTGCGTCCTGTGCGTCGGCGTCCTCGGGTCGCCGCCGGAGATGGACACCACCGCGTACACGCGCATCTT
GGAGAACAGCGTCACCTTCTTCAGGTCCTTGGCCGAGATCAGCGTCACCTCCAGCACCCGGTACGCCATGATCGCGCCGC
TCGCTTGCAGGAGCCCGTTGTGATCACTCTGTCGATATTTCGGTTGCGTGATCGGGAGACGATGATTTGTGGAAGACGAC
GATGGACGGATGGAGGAGCAAGCTATGAATGATTCTCAATGGTAAGCAGATCTTGGAGGCTACGAATGATCCAAGGGAGA
TGGCTCGTGACGGTTTGGGTCGTAGGGTTGCAATGTTTAGTCTGGTTGTTAGTTTAGTGGGTAATTTTGTGCAAAAGTTT
TA-GGGTCTTTTTGCTGGAAGATCTAATAATAGCATGGGTTGTGTTAATTTAAGCTGTTGCTAATTGTGTGGTGACCCGT
TCATGTCGGTAGCTTAACAATATTGGTGTTTTTGGTCCAAGTTTTTTTAAATCGATTACACCTTTTTAGAGTCAATTACA
CCGGTGGTACTTGAACTTGGCGTAAACGGTCAATTTGGTGTTAGAACTTGTGGTATATATTGAACTGGTGCAATAACTTG
GCTCGGGTGTGCAAATACAGTACTAACCGCGCTTGGATACGAAATCAATGCTGACTTGACTGCCAGTGTGGCGTGGGGCC
CTCTGTCAGCGACTAGAAGTGTGTGTCCTATTTTTTTGTAAAGAAAACCTTGACATTTTTATTTCTCACAAAAAAAGACC
CTGTTCATGTGGTAGATGGTATTTTATTTTGTTTACTGTATGACAGATGAGTCCCGACGTGAAAATTAAAAGGGAAAATG
TTAGACTCCTACACTCCAACACACGACCTACTTTTTTTTTTAGAATTCAACACGCGGCCTACTGTTAGGGTGCACGCGTT
CATAGCCACTGCACCAATTACATTCAGATGTCTAACAAGGACAACAGTCGTTAATGTAGTATAAGGATGATACATTTTTT
AACACAATATAAGGATGATACATGTGGGGCTTAAATTGGCTGCAGCTAGTGCGGCCCATTTTGCACATGCAAGTTCTCTT
TGAATTATTTGTGAAACGTAAGTAATTAAAATAATGTTCAAATATTTATTTTTTATAAATATTATACATACAAACGATGA
TTAGTAGATAAAAACATTTAAACATACACACATGTATTATATTTTTTTATTAAATATGGACATTTAAAATGTATAATTAA
TAGAAAAATATACATGTGCTGCTTATATTTGAATATTCAAATTGATGAATACAAAAATTTACTAAATGTTTATAAATATT
CACTTGTGTATAATTTTCACTTGTACCTTCTATTCAAAAAATTTATATAATTTAAATATTAGCACAACTGAATATTCATA
TGAAGATTTTAAATCTTAAATTATGAATATTTTTAATTATACAAACATGGAACTATAAAAATGTGTGTATAATTTTTGAA
GTTTTTATAGAATTAAAATAGTATTTATGATTTTCATTTAAAAAACATTTGAATTTTTTAAATTATACAAGCATTTTATA
TTTTACAAATATTATTTTAAAACATGTATATTTTTAAAATAATATGTGAACAGTTTAGAAAAGTAATTTGGTTGTATGTT
ACCTCACGAGTATTTAAATGTTATTTTTATTACTGAAATTAGAATTTACATACCTACAAATTTCTAAATAAAATGAACAG
GAGCAAATGAGCCGCACTGACGGCAGCCCACTTCAGCTCCTCAAGCGCCTCTGTTTTGATACATTAAACCTAGTTATCCA
TTTGAAGTTTTCCTCAAAGAAAAAGTTATCCGTTTGAAGTATTCTCAAAATAAAAAGTTATCCATCTAAAGTTGTGAAGA
CTGAATGGTGTAGCAGCCAGGATCGACTGTGACATGGGCAAGGGTCGCACGTTCGAGACAACGAGGCCTCCTTTTTTTCT
TGTTATTAACTTTCAGTATGTACACACGGAGCCCACTGGCCATAGAGTCAAAAAAAATGAAATGCCATCTTTCCAACGCC
GAGAGGGCATTTTGTGGGAAAAAATAATTTAAGGGGGTTTTCGCAAAAAATGGCCACACGCCCTCCTGTCTCCCTTCGGG
TCACTGACGGCGGGACCCATGCCATGTTGGCACGCCTAATCAGCGACTCGGGCGTACACAGCCGAGATTTGCACCGTATT
TTCATGCCCGAGCCAAGTTGTTAAACCAATTCGATGTATGCCGCAAGTTCTAGCACCAAAGTGACCATTTACGCCAAGTT
CAAGCACCACCGGTGTAATTGACTCCTTTTCTAAGGAACGCCATCAT---------------------------------
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--GGCTACCTTATTGATCTCAAAT-AACACTTAGAGAGTTTTTTTAGGGAAACACTTAGAGAGTTAAAAATAAAATCAGG
ATGCCCATCCATCCAATTACAAGAAAGCTTACTCTCAAAACAAAAATCTAGCAATCTCATGAGTGGTACGATTTTTGCTT
CACATAACCAATGTTTAAA-----CGTTTCCAATCTCCACAGATAGATCCATACAATCCGCATATATCGCCGCAGCTTCT
GTCCACCAATAGTTTGTTCATGTGCATGCATTAACAACTTTCAAGGAGTTTGATTCTGCAATGATCTGGTGCAAACCGAG
TGAATGCTGCCAAACTAAAACCAATGTTTCATAGCTCTCCAGGTTGTGATGGGAGGAAAACTATCACCATGAGTTGCATG
TCTGCAAACCCACCA-----------------------------------------------------------------
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>chr1A_1
CTGATAAAGTT-GACTTCATCAGTTCAACA---C-----GTAAACGATGTCATTCGCAGCATCACTGCAAAACATTGG-C
TATGTACCTCGAACGAGATTGCCGGGATGGGCGCGCGGATGGCAATGAAGCTAAGTTTATTTATTGGAAAACCCCTAGAA
GGAGAGTGGCGACTGCGTCAAAGTCGTGGATCATTTTCACGTCGTCACAATCACAACTCACAAGCAGTTTCTCTGAGGAT
CAAAAGAAAATCGCAACGCACTTGA-ATACGCGCGCGCGCGCACGAGTCGGTCCAATGCTTCCAAGGGATCGAGCAGCAC
TGTGATTGGCCAACGTACTACGTGTTCTAAGTGAGCCGTGCGTGTATGCATGCAT----GCAAGACGCGTCGGACGCGGA
TCAGAAGCAGCCGTCCATGCTCATGTCCGAGTCGGCGATGATCTCGCCCACGCCCTCGCCGAGGCCCATCATCATCCCGC
CGACCGCCGCGCCGAGGAGCCCCATCCCGAACCCGGAGCCCATCCCGACGCCTCCGTCTTGCCTGGCCGCCGCGGCGGAC
GGCGCGCCGTACCCGTAGGGAGCGGCCGCGGCGGGGCCGTAGCCGTACGACGCCCCCGCGTACCCGTACGGTGGATTGTA
GCCGTACGGCGGCACGGCGTGCTGCTGGTGGTGGTACGGCGGGTACGCGGTCACCGGGTCGGCGCCGGCCTTGGCCGCCG
CGTTCGTCTGCATGTACTGCGCGTCGCCCGGCGCCGCCGCCGTGGGGGCAGGCGCGTCGGAGAGGCTGTAGGAGATGTGG
AGCACGCCGCGCTTCCGGCCGCTCATCGGGCTGCGCACCTGGTAGCTGAGGTGCCGATGCTCGCCGGCGGGCGGCGCCAC
GGCGACGAGGTCCTGCACTGGCACCACCACCTCGCCGACGTCGCGGTCACCGAAGGAGCGGTCGGCGCGGAGGAGCACGT
GCAGCGCCAGCCCCCGCGGGTCGGCGGCGGTCGGGATGGGGAACCGCAGCGGCGCGTGCCACATGGGGTTCCGGCCGCCG
TGCCGGTCCGAGTGCGTCCTGTGCGTCGGCGTCCTTGGGTCGCCGCCGGAGATGGACACCACCGCGTACACGCGCATCTT
GGAGAACATCGTCACCTTCTTCAGGTCCTTGGCCGAGATCAGCGTCACCTCCAGCACCCGGTACGCCATGATCGCGCCGC
TCGCTCGCAGGAGCCCGTTGTGATCGCTCGGTCGATATGTCGGT-GTGTGATCGGGAGACGATGATTTGTGGAAGACGA-
--TGGACGGATGGAGGAGCAAGCTATGA-TGATTTTCAATGGTAAGTAGATCTTGGAGGCTACGAATGATCCAAGGGAGA
TGGCTAGTGACGGTTTGGGTCGTAAGGTTGCAATGTTTGGTCTGGTGGTTAGTTTAGTGGGTAATTTTGTGCAAAAGTTT
TA-GG-TCTTTTTGCTGGAAGACCTAATAATAGCATGGGTTGTGTTAATTTAAGCTTTTGCTGATTGTGTGGTGACCCGT
TCATGTCGGTAGCTTAACAACAATGGTATTTTTGGTCCAAGTTTTTTTA-------------------------------
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---------------------------------AGGAACACCATCATGGCTATTTTATTTTATTTTTTTTGCGCGAAAAC
TTCCAATCTATTCATCTTCAATCATGACAGTACAACGAACACCAGAAATAAGAATTACATCCAGATCCGTAAACGACCTA
GCGACAACTACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCGAAGCTGAGCACAACTTGTTGTAGTAGAC
AGTCGGGAAGTCGTCGTGCTAAGGCCCCATAGGACCAGCACCTCAGAACAGCAACCGCCGCTGATGAAAAATAACGTAGA
TCGGAAGTATCTAAACCGAAGACACACGAATGTAGACGAACAAAAACGAGATCCGAGCAAATCCACCAAAGATAGATCTG
CTGAAGACACACCTCCACGCGCCCACCAATGATGCTAGATGCACCGCCTAAACGGGGGCTAGGAGGGGAGACCTTTATTC
CATCTTCAGGAGCCGCCACCGTCTCACCTTCCTGAGTAGGACACAAACCCTAACAAGATTAAAAAAACGACAAAAAACAG
AGCCCTCCCGCCGGCCCTTGCCAGGATCCACCGCGCCTCCATGGCCCTAGGCCCACCGGAGACGAGGCGGACCTGCGCCG
GAGCCGGCGAGAGGCACAAACCCTAACTTTCTTTCTTAGAGGAGGAGGAGGAGGCGGAACCCTGGCTCTAGATACGTATC
ATGGCTACTTTATTGACCTCAAAT--------------------------AACACTTAGAGAGTTAAAAATAAAATCAGG
ATGTCCATCCATCCAGTTACAAGAAATCGTACTCTCAAAACAA-AATCTAGCAATCTCTTGAGCGGTATGATTTTTGCTT
CACGTAAACAATGTTTAAAATGAACGTTTCCAATCTCCACAAATAGATCCATACAATTCGCATATATTGCCGCAGCTTCT
GTCCATCAATAGTTTGTTCATGTGGGTGCATTAACAACTTTCAAGGAGTTTGATTCTGCAATGATCTGGTGCAAACCGAG
CGAATGCTGCCAAACTAAAACC-ATGTTTCATAGCTCTCCAGGTTGTGATGGGAGGAAAAGTATCACCATGAGTTGCATG
TCTGCAAACCCACCA-----------------------------------------------------------------
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>SNPs
-----------S--------------SS-SSSSSSSSSS-------------S-------------------------S-
-------------------S----------------S-----------------------------S-------------
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-----------------------SSS---S----------S------------------------------S--------
------------------------------------------------------------------------S-------
------------------------S-------------------------------------------------------
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---------S----------------------------------------------S-----------------------
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--------------------------S-----------------------------------------------------
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------------------------------S-------------------------------------------------
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--------S-----------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------S----------------S-------------S----------------------------------------
---------------S------------------------S----------------------------SS---------
--S-----------------------------------------------------------------------------
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------------------------S---------------SSSS------------------------------------
--------------------------------------------S-----------------------------------
------------------------S-----------------S---------------------------S---------
-----------------------S-----------------------------------S-SSSS---------------
-------------SS-----S-S--------------S------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_30
----------TCGACTTCATCAGTTCGCCC--------------------------------------------------
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>reverse_4311
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----------------------------------------------------------------------AGCAGCTTCT
GTCCACCAAT----------------------------------------------------------------------
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