Multiple sequence alignment - TraesCS1B01G107900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1B01G107900
chr1B
100.000
2917
0
0
1
2917
120039365
120042281
0.000000e+00
5387
1
TraesCS1B01G107900
chr1B
95.225
356
17
0
2559
2914
94551046
94551401
5.460000e-157
564
2
TraesCS1B01G107900
chr1B
95.211
355
15
1
2562
2916
583428604
583428252
7.060000e-156
560
3
TraesCS1B01G107900
chr1A
96.691
1813
52
7
434
2244
77272808
77274614
0.000000e+00
3009
4
TraesCS1B01G107900
chr1A
96.520
431
14
1
1
431
77272315
77272744
0.000000e+00
712
5
TraesCS1B01G107900
chr1A
97.010
301
6
2
2265
2563
77274828
77275127
1.210000e-138
503
6
TraesCS1B01G107900
chr5A
94.766
363
17
2
2554
2916
509637610
509637970
5.460000e-157
564
7
TraesCS1B01G107900
chr5D
94.693
358
18
1
2559
2916
16150272
16149916
3.280000e-154
555
8
TraesCS1B01G107900
chr7B
94.413
358
17
3
2559
2916
634577144
634577498
5.500000e-152
547
9
TraesCS1B01G107900
chr2D
94.857
350
18
0
2568
2917
72485574
72485923
5.500000e-152
547
10
TraesCS1B01G107900
chr1D
94.366
355
20
0
2562
2916
431627473
431627119
1.980000e-151
545
11
TraesCS1B01G107900
chr6D
94.118
357
20
1
2560
2916
82637360
82637715
2.560000e-150
542
12
TraesCS1B01G107900
chr6D
93.425
365
20
4
2552
2916
462263399
462263039
3.310000e-149
538
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1B01G107900
chr1B
120039365
120042281
2916
False
5387
5387
100.000000
1
2917
1
chr1B.!!$F2
2916
1
TraesCS1B01G107900
chr1A
77272315
77275127
2812
False
1408
3009
96.740333
1
2563
3
chr1A.!!$F1
2562
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
867
930
0.676736
CCTCCTCTTCTGTATCCCGC
59.323
60.0
0.0
0.0
0.0
6.13
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2753
3012
0.029035
CGGAGCGTCGTATGTAGCTT
59.971
55.0
0.0
0.0
40.39
3.74
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
3.018856
TGCAAAATACATCCAGCTCCTG
58.981
45.455
0.00
0.00
0.00
3.86
210
211
7.116948
GGATGATTGATAGTCATTACTGGTTCG
59.883
40.741
0.00
0.00
36.49
3.95
254
255
5.460091
GCAAAGACAAGTTTTGAACATCTCC
59.540
40.000
2.18
0.00
37.65
3.71
308
309
7.039784
AGCATAAACAAGCCATTAGACTTGAAA
60.040
33.333
9.54
0.00
44.89
2.69
325
326
7.227512
AGACTTGAAACCTTGAACATCTAGTTG
59.772
37.037
0.00
0.00
41.51
3.16
355
356
6.698008
AATGTGAAAGATCTGTTTGTCACA
57.302
33.333
19.88
19.88
40.41
3.58
405
406
7.501225
AGTTAAAGTAGTGCATTGTAGGTTTGT
59.499
33.333
0.00
0.00
0.00
2.83
431
432
5.687166
ATACTCCGTCCCAAAATAAGTGA
57.313
39.130
0.00
0.00
0.00
3.41
432
433
3.939066
ACTCCGTCCCAAAATAAGTGAG
58.061
45.455
0.00
0.00
0.00
3.51
477
539
9.468532
GATGTCAAATCATTATTTTAAGCCCTC
57.531
33.333
0.00
0.00
32.87
4.30
485
547
7.555087
TCATTATTTTAAGCCCTCAATTGTGG
58.445
34.615
17.88
17.88
0.00
4.17
500
562
7.406031
TCAATTGTGGGTAAAGTTAAACACA
57.594
32.000
5.13
0.00
37.09
3.72
505
567
7.934855
TGTGGGTAAAGTTAAACACAGTTAA
57.065
32.000
0.00
0.00
34.31
2.01
524
586
6.537301
CAGTTAACTGGTTTGAGTGAGTGTTA
59.463
38.462
25.19
0.00
40.20
2.41
525
587
7.065324
CAGTTAACTGGTTTGAGTGAGTGTTAA
59.935
37.037
25.19
0.00
40.20
2.01
610
673
6.206634
TCTGCTTTAATATGGGCCGATTTAAG
59.793
38.462
18.30
18.30
0.00
1.85
671
734
8.516234
TGCTGTGTAGTGTCTTTTCTTTTTAAA
58.484
29.630
0.00
0.00
0.00
1.52
716
779
4.301072
TGTACTTCTGGCCTTAGCATTT
57.699
40.909
3.32
0.00
42.56
2.32
725
788
4.357325
TGGCCTTAGCATTTATTTTGGGA
58.643
39.130
3.32
0.00
42.56
4.37
726
789
4.780021
TGGCCTTAGCATTTATTTTGGGAA
59.220
37.500
3.32
0.00
42.56
3.97
727
790
5.428131
TGGCCTTAGCATTTATTTTGGGAAT
59.572
36.000
3.32
0.00
42.56
3.01
791
854
8.462143
TGACTTTTTATTTACTGTCTCGCTAG
57.538
34.615
0.00
0.00
0.00
3.42
867
930
0.676736
CCTCCTCTTCTGTATCCCGC
59.323
60.000
0.00
0.00
0.00
6.13
974
1038
9.844790
ACCAAACTGTAAACTGTACTTAAAAAC
57.155
29.630
0.00
0.00
0.00
2.43
975
1039
9.843334
CCAAACTGTAAACTGTACTTAAAAACA
57.157
29.630
0.00
0.00
0.00
2.83
1020
1084
3.446570
GCTGCTCCGCCAAATGCT
61.447
61.111
0.00
0.00
38.05
3.79
1144
1208
8.582657
AGCTCTTATGAACAAAGTAGAGACTA
57.417
34.615
0.00
0.00
33.58
2.59
1179
1243
0.533032
GAGCTGCGGAGTTAGACCTT
59.467
55.000
5.62
0.00
0.00
3.50
1197
1261
2.574322
CTTCGAGGACAAAATTGCACG
58.426
47.619
0.00
0.00
0.00
5.34
1294
1358
1.535896
GTTCAGAACCCCTTTCGCTTC
59.464
52.381
1.29
0.00
39.47
3.86
1308
1372
2.493035
TCGCTTCAAGATGCTTGTTCA
58.507
42.857
7.02
0.00
0.00
3.18
1411
1475
1.001706
CAGCTTCCATGATTGGCATCG
60.002
52.381
0.00
0.00
43.29
3.84
1450
1514
5.592054
TGCTTCTTCTTCATGTATACCGAG
58.408
41.667
0.00
0.00
0.00
4.63
1491
1555
3.433615
GCAGAAGATGTACCAACAGTCAC
59.566
47.826
0.00
0.00
39.49
3.67
1638
1702
3.013921
TGACTTGGAACTTGTGAACACC
58.986
45.455
2.46
0.00
0.00
4.16
1746
1810
6.407299
GGAGAATAATTGGATTGTTGCATGGT
60.407
38.462
0.00
0.00
0.00
3.55
1795
1859
1.895798
TCTCCCATGCTGATATCGGAC
59.104
52.381
16.04
7.30
0.00
4.79
1954
2018
0.178873
TACAGCCCTTGTTCCCTCCT
60.179
55.000
0.00
0.00
41.29
3.69
1957
2021
1.204113
AGCCCTTGTTCCCTCCTGAG
61.204
60.000
0.00
0.00
0.00
3.35
1961
2025
1.274712
CTTGTTCCCTCCTGAGCTCT
58.725
55.000
16.19
0.00
0.00
4.09
1963
2027
2.623418
TGTTCCCTCCTGAGCTCTTA
57.377
50.000
16.19
0.00
0.00
2.10
1981
2045
5.471456
GCTCTTATTGTTATCCCATCCACAG
59.529
44.000
0.00
0.00
0.00
3.66
2000
2064
1.962822
TTGCTGCTCGAACTGCTGG
60.963
57.895
16.98
2.70
35.70
4.85
2010
2074
2.869801
TCGAACTGCTGGTAAACAACAG
59.130
45.455
0.00
0.00
46.33
3.16
2011
2075
2.032030
CGAACTGCTGGTAAACAACAGG
60.032
50.000
2.95
0.00
45.43
4.00
2132
2196
7.451255
TGGAACAGTAAGAATGGATTGATTGTT
59.549
33.333
0.00
0.00
0.00
2.83
2153
2217
7.288810
TGTTTGGTTTTCTGCTTCAGATTAT
57.711
32.000
0.00
0.00
40.39
1.28
2230
2294
6.839124
TGCCATTCAGAATACTGTGATTTT
57.161
33.333
0.00
0.00
43.81
1.82
2244
2308
5.982516
ACTGTGATTTTATTCTGCGCAAAAA
59.017
32.000
17.30
17.30
0.00
1.94
2337
2594
2.111972
ACTCTCTTGTCCCCTCACCTTA
59.888
50.000
0.00
0.00
0.00
2.69
2360
2617
8.721019
TTAAGAGTTTAGTTTCCTTTTCGTGA
57.279
30.769
0.00
0.00
0.00
4.35
2539
2798
8.667463
GCAACTACTTGTAAAATATAACGGGAA
58.333
33.333
0.00
0.00
0.00
3.97
2563
2822
8.449423
AATATGGGATACAGCCAGAGTTATTA
57.551
34.615
0.00
0.00
39.74
0.98
2564
2823
5.546621
TGGGATACAGCCAGAGTTATTAC
57.453
43.478
0.00
0.00
39.74
1.89
2565
2824
4.347000
TGGGATACAGCCAGAGTTATTACC
59.653
45.833
0.00
0.00
39.74
2.85
2566
2825
4.557205
GGATACAGCCAGAGTTATTACCG
58.443
47.826
0.00
0.00
0.00
4.02
2567
2826
4.280174
GGATACAGCCAGAGTTATTACCGA
59.720
45.833
0.00
0.00
0.00
4.69
2568
2827
5.221382
GGATACAGCCAGAGTTATTACCGAA
60.221
44.000
0.00
0.00
0.00
4.30
2569
2828
4.546829
ACAGCCAGAGTTATTACCGAAA
57.453
40.909
0.00
0.00
0.00
3.46
2570
2829
4.901868
ACAGCCAGAGTTATTACCGAAAA
58.098
39.130
0.00
0.00
0.00
2.29
2571
2830
5.310451
ACAGCCAGAGTTATTACCGAAAAA
58.690
37.500
0.00
0.00
0.00
1.94
2572
2831
5.411669
ACAGCCAGAGTTATTACCGAAAAAG
59.588
40.000
0.00
0.00
0.00
2.27
2573
2832
4.941873
AGCCAGAGTTATTACCGAAAAAGG
59.058
41.667
0.00
0.00
37.30
3.11
2574
2833
4.438336
GCCAGAGTTATTACCGAAAAAGGC
60.438
45.833
0.00
0.00
33.69
4.35
2575
2834
4.941873
CCAGAGTTATTACCGAAAAAGGCT
59.058
41.667
0.00
0.00
33.69
4.58
2576
2835
5.414765
CCAGAGTTATTACCGAAAAAGGCTT
59.585
40.000
0.00
0.00
33.69
4.35
2577
2836
6.072119
CCAGAGTTATTACCGAAAAAGGCTTT
60.072
38.462
6.68
6.68
33.69
3.51
2578
2837
7.021790
CAGAGTTATTACCGAAAAAGGCTTTC
58.978
38.462
13.76
0.41
33.69
2.62
2580
2839
2.691984
TTACCGAAAAAGGCTTTCGC
57.308
45.000
13.76
7.41
46.89
4.70
2590
2849
3.509659
GCTTTCGCCCCGCTTTAT
58.490
55.556
0.00
0.00
0.00
1.40
2591
2850
2.697819
GCTTTCGCCCCGCTTTATA
58.302
52.632
0.00
0.00
0.00
0.98
2592
2851
1.235724
GCTTTCGCCCCGCTTTATAT
58.764
50.000
0.00
0.00
0.00
0.86
2593
2852
2.419667
GCTTTCGCCCCGCTTTATATA
58.580
47.619
0.00
0.00
0.00
0.86
2594
2853
3.007635
GCTTTCGCCCCGCTTTATATAT
58.992
45.455
0.00
0.00
0.00
0.86
2595
2854
4.186159
GCTTTCGCCCCGCTTTATATATA
58.814
43.478
0.00
0.00
0.00
0.86
2596
2855
4.632688
GCTTTCGCCCCGCTTTATATATAA
59.367
41.667
0.81
0.81
0.00
0.98
2597
2856
5.122711
GCTTTCGCCCCGCTTTATATATAAA
59.877
40.000
15.47
15.47
0.00
1.40
2614
2873
8.978874
ATATATAAAGCACAGATCACCAACAA
57.021
30.769
0.00
0.00
0.00
2.83
2615
2874
3.715628
AAAGCACAGATCACCAACAAC
57.284
42.857
0.00
0.00
0.00
3.32
2616
2875
1.609208
AGCACAGATCACCAACAACC
58.391
50.000
0.00
0.00
0.00
3.77
2617
2876
0.598065
GCACAGATCACCAACAACCC
59.402
55.000
0.00
0.00
0.00
4.11
2618
2877
1.979855
CACAGATCACCAACAACCCA
58.020
50.000
0.00
0.00
0.00
4.51
2619
2878
1.881973
CACAGATCACCAACAACCCAG
59.118
52.381
0.00
0.00
0.00
4.45
2620
2879
1.494721
ACAGATCACCAACAACCCAGT
59.505
47.619
0.00
0.00
0.00
4.00
2621
2880
2.708861
ACAGATCACCAACAACCCAGTA
59.291
45.455
0.00
0.00
0.00
2.74
2622
2881
3.074412
CAGATCACCAACAACCCAGTAC
58.926
50.000
0.00
0.00
0.00
2.73
2623
2882
2.708861
AGATCACCAACAACCCAGTACA
59.291
45.455
0.00
0.00
0.00
2.90
2624
2883
2.631160
TCACCAACAACCCAGTACAG
57.369
50.000
0.00
0.00
0.00
2.74
2625
2884
0.951558
CACCAACAACCCAGTACAGC
59.048
55.000
0.00
0.00
0.00
4.40
2626
2885
0.548989
ACCAACAACCCAGTACAGCA
59.451
50.000
0.00
0.00
0.00
4.41
2627
2886
0.951558
CCAACAACCCAGTACAGCAC
59.048
55.000
0.00
0.00
0.00
4.40
2628
2887
1.674359
CAACAACCCAGTACAGCACA
58.326
50.000
0.00
0.00
0.00
4.57
2629
2888
1.333619
CAACAACCCAGTACAGCACAC
59.666
52.381
0.00
0.00
0.00
3.82
2630
2889
0.531974
ACAACCCAGTACAGCACACG
60.532
55.000
0.00
0.00
0.00
4.49
2631
2890
1.597027
AACCCAGTACAGCACACGC
60.597
57.895
0.00
0.00
38.99
5.34
2632
2891
2.742372
CCCAGTACAGCACACGCC
60.742
66.667
0.00
0.00
39.83
5.68
2633
2892
2.030412
CCAGTACAGCACACGCCA
59.970
61.111
0.00
0.00
39.83
5.69
2634
2893
2.317609
CCAGTACAGCACACGCCAC
61.318
63.158
0.00
0.00
39.83
5.01
2635
2894
2.030562
AGTACAGCACACGCCACC
59.969
61.111
0.00
0.00
39.83
4.61
2636
2895
2.280524
GTACAGCACACGCCACCA
60.281
61.111
0.00
0.00
39.83
4.17
2637
2896
1.890041
GTACAGCACACGCCACCAA
60.890
57.895
0.00
0.00
39.83
3.67
2638
2897
1.890041
TACAGCACACGCCACCAAC
60.890
57.895
0.00
0.00
39.83
3.77
2639
2898
2.595009
TACAGCACACGCCACCAACA
62.595
55.000
0.00
0.00
39.83
3.33
2640
2899
3.209097
AGCACACGCCACCAACAC
61.209
61.111
0.00
0.00
39.83
3.32
2641
2900
3.513438
GCACACGCCACCAACACA
61.513
61.111
0.00
0.00
0.00
3.72
2642
2901
2.407210
CACACGCCACCAACACAC
59.593
61.111
0.00
0.00
0.00
3.82
2643
2902
2.045829
ACACGCCACCAACACACA
60.046
55.556
0.00
0.00
0.00
3.72
2644
2903
2.403378
ACACGCCACCAACACACAC
61.403
57.895
0.00
0.00
0.00
3.82
2645
2904
3.199190
ACGCCACCAACACACACG
61.199
61.111
0.00
0.00
0.00
4.49
2646
2905
4.605967
CGCCACCAACACACACGC
62.606
66.667
0.00
0.00
0.00
5.34
2647
2906
3.513438
GCCACCAACACACACGCA
61.513
61.111
0.00
0.00
0.00
5.24
2648
2907
2.407210
CCACCAACACACACGCAC
59.593
61.111
0.00
0.00
0.00
5.34
2649
2908
2.402572
CCACCAACACACACGCACA
61.403
57.895
0.00
0.00
0.00
4.57
2650
2909
1.226267
CACCAACACACACGCACAC
60.226
57.895
0.00
0.00
0.00
3.82
2651
2910
1.672682
ACCAACACACACGCACACA
60.673
52.632
0.00
0.00
0.00
3.72
2652
2911
1.226267
CCAACACACACGCACACAC
60.226
57.895
0.00
0.00
0.00
3.82
2653
2912
1.226267
CAACACACACGCACACACC
60.226
57.895
0.00
0.00
0.00
4.16
2654
2913
2.403378
AACACACACGCACACACCC
61.403
57.895
0.00
0.00
0.00
4.61
2655
2914
2.821810
CACACACGCACACACCCA
60.822
61.111
0.00
0.00
0.00
4.51
2656
2915
2.045829
ACACACGCACACACCCAA
60.046
55.556
0.00
0.00
0.00
4.12
2657
2916
2.112198
ACACACGCACACACCCAAG
61.112
57.895
0.00
0.00
0.00
3.61
2658
2917
2.515991
ACACGCACACACCCAAGG
60.516
61.111
0.00
0.00
0.00
3.61
2659
2918
3.964875
CACGCACACACCCAAGGC
61.965
66.667
0.00
0.00
0.00
4.35
2660
2919
4.497984
ACGCACACACCCAAGGCA
62.498
61.111
0.00
0.00
0.00
4.75
2661
2920
3.663176
CGCACACACCCAAGGCAG
61.663
66.667
0.00
0.00
0.00
4.85
2662
2921
3.297620
GCACACACCCAAGGCAGG
61.298
66.667
0.00
0.00
0.00
4.85
2663
2922
2.515398
CACACACCCAAGGCAGGA
59.485
61.111
0.00
0.00
0.00
3.86
2664
2923
1.075482
CACACACCCAAGGCAGGAT
59.925
57.895
0.00
0.00
0.00
3.24
2665
2924
0.327924
CACACACCCAAGGCAGGATA
59.672
55.000
0.00
0.00
0.00
2.59
2666
2925
0.328258
ACACACCCAAGGCAGGATAC
59.672
55.000
0.00
0.00
0.00
2.24
2667
2926
0.327924
CACACCCAAGGCAGGATACA
59.672
55.000
0.00
0.00
41.41
2.29
2668
2927
1.072266
ACACCCAAGGCAGGATACAA
58.928
50.000
0.00
0.00
41.41
2.41
2669
2928
1.427368
ACACCCAAGGCAGGATACAAA
59.573
47.619
0.00
0.00
41.41
2.83
2670
2929
2.094675
CACCCAAGGCAGGATACAAAG
58.905
52.381
0.00
0.00
41.41
2.77
2671
2930
1.005924
ACCCAAGGCAGGATACAAAGG
59.994
52.381
0.00
0.00
41.41
3.11
2672
2931
1.106285
CCAAGGCAGGATACAAAGGC
58.894
55.000
0.00
0.00
41.41
4.35
2673
2932
0.734889
CAAGGCAGGATACAAAGGCG
59.265
55.000
0.00
0.00
41.41
5.52
2674
2933
1.032114
AAGGCAGGATACAAAGGCGC
61.032
55.000
0.00
0.00
41.41
6.53
2675
2934
1.452108
GGCAGGATACAAAGGCGCT
60.452
57.895
7.64
0.00
41.41
5.92
2676
2935
1.718757
GGCAGGATACAAAGGCGCTG
61.719
60.000
7.64
0.00
41.41
5.18
2677
2936
0.744414
GCAGGATACAAAGGCGCTGA
60.744
55.000
7.64
0.00
41.41
4.26
2678
2937
1.293924
CAGGATACAAAGGCGCTGAG
58.706
55.000
7.64
0.00
41.41
3.35
2679
2938
0.462759
AGGATACAAAGGCGCTGAGC
60.463
55.000
7.64
0.00
43.13
4.26
2680
2939
3.121327
AGGATACAAAGGCGCTGAGCA
62.121
52.381
7.64
0.00
45.24
4.26
2691
2950
4.146058
CTGAGCACAGCAACACCA
57.854
55.556
0.00
0.00
37.33
4.17
2692
2951
1.650912
CTGAGCACAGCAACACCAC
59.349
57.895
0.00
0.00
37.33
4.16
2693
2952
1.789078
CTGAGCACAGCAACACCACC
61.789
60.000
0.00
0.00
37.33
4.61
2694
2953
2.519302
AGCACAGCAACACCACCC
60.519
61.111
0.00
0.00
0.00
4.61
2695
2954
3.605664
GCACAGCAACACCACCCC
61.606
66.667
0.00
0.00
0.00
4.95
2696
2955
2.195683
CACAGCAACACCACCCCT
59.804
61.111
0.00
0.00
0.00
4.79
2697
2956
1.454104
CACAGCAACACCACCCCTA
59.546
57.895
0.00
0.00
0.00
3.53
2698
2957
0.606401
CACAGCAACACCACCCCTAG
60.606
60.000
0.00
0.00
0.00
3.02
2699
2958
1.675641
CAGCAACACCACCCCTAGC
60.676
63.158
0.00
0.00
0.00
3.42
2700
2959
2.153401
AGCAACACCACCCCTAGCA
61.153
57.895
0.00
0.00
0.00
3.49
2701
2960
1.971695
GCAACACCACCCCTAGCAC
60.972
63.158
0.00
0.00
0.00
4.40
2702
2961
1.761174
CAACACCACCCCTAGCACT
59.239
57.895
0.00
0.00
0.00
4.40
2703
2962
0.981183
CAACACCACCCCTAGCACTA
59.019
55.000
0.00
0.00
0.00
2.74
2704
2963
0.981943
AACACCACCCCTAGCACTAC
59.018
55.000
0.00
0.00
0.00
2.73
2705
2964
0.178915
ACACCACCCCTAGCACTACA
60.179
55.000
0.00
0.00
0.00
2.74
2706
2965
0.981183
CACCACCCCTAGCACTACAA
59.019
55.000
0.00
0.00
0.00
2.41
2707
2966
1.066143
CACCACCCCTAGCACTACAAG
60.066
57.143
0.00
0.00
0.00
3.16
2708
2967
1.203262
ACCACCCCTAGCACTACAAGA
60.203
52.381
0.00
0.00
0.00
3.02
2709
2968
1.482593
CCACCCCTAGCACTACAAGAG
59.517
57.143
0.00
0.00
0.00
2.85
2710
2969
1.134670
CACCCCTAGCACTACAAGAGC
60.135
57.143
0.00
0.00
31.73
4.09
2711
2970
0.466124
CCCCTAGCACTACAAGAGCC
59.534
60.000
0.00
0.00
31.96
4.70
2712
2971
1.195115
CCCTAGCACTACAAGAGCCA
58.805
55.000
0.00
0.00
31.96
4.75
2713
2972
1.134670
CCCTAGCACTACAAGAGCCAC
60.135
57.143
0.00
0.00
31.96
5.01
2714
2973
1.134670
CCTAGCACTACAAGAGCCACC
60.135
57.143
0.00
0.00
31.96
4.61
2715
2974
0.530744
TAGCACTACAAGAGCCACCG
59.469
55.000
0.00
0.00
31.96
4.94
2716
2975
1.741770
GCACTACAAGAGCCACCGG
60.742
63.158
0.00
0.00
0.00
5.28
2717
2976
1.079127
CACTACAAGAGCCACCGGG
60.079
63.158
6.32
0.00
37.18
5.73
2718
2977
2.291043
ACTACAAGAGCCACCGGGG
61.291
63.158
6.32
0.00
40.85
5.73
2719
2978
3.006728
TACAAGAGCCACCGGGGG
61.007
66.667
22.08
22.08
37.04
5.40
2727
2986
2.361992
CCACCGGGGGCCTTAAAC
60.362
66.667
11.58
0.00
0.00
2.01
2728
2987
2.748647
CACCGGGGGCCTTAAACG
60.749
66.667
6.32
0.04
0.00
3.60
2729
2988
3.251509
ACCGGGGGCCTTAAACGT
61.252
61.111
6.32
0.00
0.00
3.99
2730
2989
2.748647
CCGGGGGCCTTAAACGTG
60.749
66.667
0.84
0.00
0.00
4.49
2731
2990
2.348243
CGGGGGCCTTAAACGTGA
59.652
61.111
0.84
0.00
0.00
4.35
2732
2991
1.302671
CGGGGGCCTTAAACGTGAA
60.303
57.895
0.84
0.00
0.00
3.18
2733
2992
1.579964
CGGGGGCCTTAAACGTGAAC
61.580
60.000
0.84
0.00
0.00
3.18
2734
2993
0.537828
GGGGGCCTTAAACGTGAACA
60.538
55.000
0.84
0.00
0.00
3.18
2735
2994
0.594602
GGGGCCTTAAACGTGAACAC
59.405
55.000
0.84
0.00
0.00
3.32
2752
3011
3.862124
CGCCACCGTGAAGAGAAG
58.138
61.111
0.00
0.00
0.00
2.85
2753
3012
1.289066
CGCCACCGTGAAGAGAAGA
59.711
57.895
0.00
0.00
0.00
2.87
2754
3013
0.319555
CGCCACCGTGAAGAGAAGAA
60.320
55.000
0.00
0.00
0.00
2.52
2755
3014
1.433534
GCCACCGTGAAGAGAAGAAG
58.566
55.000
0.00
0.00
0.00
2.85
2756
3015
1.433534
CCACCGTGAAGAGAAGAAGC
58.566
55.000
0.00
0.00
0.00
3.86
2757
3016
1.001406
CCACCGTGAAGAGAAGAAGCT
59.999
52.381
0.00
0.00
0.00
3.74
2758
3017
2.231478
CCACCGTGAAGAGAAGAAGCTA
59.769
50.000
0.00
0.00
0.00
3.32
2759
3018
3.246619
CACCGTGAAGAGAAGAAGCTAC
58.753
50.000
0.00
0.00
0.00
3.58
2760
3019
2.891580
ACCGTGAAGAGAAGAAGCTACA
59.108
45.455
0.00
0.00
0.00
2.74
2761
3020
3.511934
ACCGTGAAGAGAAGAAGCTACAT
59.488
43.478
0.00
0.00
0.00
2.29
2762
3021
4.705507
ACCGTGAAGAGAAGAAGCTACATA
59.294
41.667
0.00
0.00
0.00
2.29
2763
3022
5.038033
CCGTGAAGAGAAGAAGCTACATAC
58.962
45.833
0.00
0.00
0.00
2.39
2764
3023
4.731000
CGTGAAGAGAAGAAGCTACATACG
59.269
45.833
0.00
0.00
0.00
3.06
2765
3024
5.447413
CGTGAAGAGAAGAAGCTACATACGA
60.447
44.000
0.00
0.00
0.00
3.43
2766
3025
5.740099
GTGAAGAGAAGAAGCTACATACGAC
59.260
44.000
0.00
0.00
0.00
4.34
2767
3026
4.539509
AGAGAAGAAGCTACATACGACG
57.460
45.455
0.00
0.00
0.00
5.12
2768
3027
3.037324
GAGAAGAAGCTACATACGACGC
58.963
50.000
0.00
0.00
0.00
5.19
2769
3028
2.683867
AGAAGAAGCTACATACGACGCT
59.316
45.455
0.00
0.00
0.00
5.07
2770
3029
2.759538
AGAAGCTACATACGACGCTC
57.240
50.000
0.00
0.00
31.30
5.03
2771
3030
1.334243
AGAAGCTACATACGACGCTCC
59.666
52.381
0.00
0.00
31.30
4.70
2772
3031
0.029035
AAGCTACATACGACGCTCCG
59.971
55.000
0.00
0.00
31.30
4.63
2773
3032
1.094073
AGCTACATACGACGCTCCGT
61.094
55.000
0.00
5.62
45.10
4.69
2774
3033
0.928908
GCTACATACGACGCTCCGTG
60.929
60.000
9.95
0.00
41.37
4.94
2775
3034
0.316772
CTACATACGACGCTCCGTGG
60.317
60.000
9.95
0.00
41.37
4.94
2776
3035
1.717791
TACATACGACGCTCCGTGGG
61.718
60.000
9.95
5.16
41.37
4.61
2777
3036
4.203076
ATACGACGCTCCGTGGGC
62.203
66.667
9.95
0.00
41.37
5.36
2788
3047
4.335647
CGTGGGCTCCAAGGCAGT
62.336
66.667
2.81
0.00
43.44
4.40
2789
3048
2.674380
GTGGGCTCCAAGGCAGTG
60.674
66.667
2.81
0.00
43.44
3.66
2790
3049
4.666253
TGGGCTCCAAGGCAGTGC
62.666
66.667
6.55
6.55
43.44
4.40
2801
3060
3.359002
GCAGTGCCAACAGGAAGG
58.641
61.111
2.85
0.00
0.00
3.46
2802
3061
1.529244
GCAGTGCCAACAGGAAGGT
60.529
57.895
2.85
0.00
0.00
3.50
2803
3062
1.109323
GCAGTGCCAACAGGAAGGTT
61.109
55.000
2.85
0.00
0.00
3.50
2804
3063
1.817740
GCAGTGCCAACAGGAAGGTTA
60.818
52.381
2.85
0.00
0.00
2.85
2805
3064
1.880027
CAGTGCCAACAGGAAGGTTAC
59.120
52.381
0.00
0.00
0.00
2.50
2806
3065
0.872388
GTGCCAACAGGAAGGTTACG
59.128
55.000
0.00
0.00
0.00
3.18
2807
3066
0.759959
TGCCAACAGGAAGGTTACGA
59.240
50.000
0.00
0.00
0.00
3.43
2808
3067
1.154197
GCCAACAGGAAGGTTACGAC
58.846
55.000
0.00
0.00
0.00
4.34
2809
3068
1.541670
GCCAACAGGAAGGTTACGACA
60.542
52.381
0.00
0.00
0.00
4.35
2810
3069
2.140717
CCAACAGGAAGGTTACGACAC
58.859
52.381
0.00
0.00
0.00
3.67
2811
3070
2.224209
CCAACAGGAAGGTTACGACACT
60.224
50.000
0.00
0.00
0.00
3.55
2812
3071
2.800544
CAACAGGAAGGTTACGACACTG
59.199
50.000
0.00
0.00
0.00
3.66
2813
3072
2.313317
ACAGGAAGGTTACGACACTGA
58.687
47.619
0.00
0.00
0.00
3.41
2814
3073
2.696707
ACAGGAAGGTTACGACACTGAA
59.303
45.455
0.00
0.00
0.00
3.02
2815
3074
3.243771
ACAGGAAGGTTACGACACTGAAG
60.244
47.826
0.00
0.00
0.00
3.02
2816
3075
2.067013
GGAAGGTTACGACACTGAAGC
58.933
52.381
0.00
0.00
0.00
3.86
2817
3076
1.719780
GAAGGTTACGACACTGAAGCG
59.280
52.381
0.00
0.00
0.00
4.68
2818
3077
0.666577
AGGTTACGACACTGAAGCGC
60.667
55.000
0.00
0.00
0.00
5.92
2819
3078
1.623973
GGTTACGACACTGAAGCGCC
61.624
60.000
2.29
0.00
0.00
6.53
2820
3079
1.731613
TTACGACACTGAAGCGCCG
60.732
57.895
2.29
0.00
0.00
6.46
2841
3100
4.547367
CCGCCCGACCCAAGGATC
62.547
72.222
0.00
0.00
0.00
3.36
2842
3101
3.781307
CGCCCGACCCAAGGATCA
61.781
66.667
0.00
0.00
0.00
2.92
2843
3102
2.190578
GCCCGACCCAAGGATCAG
59.809
66.667
0.00
0.00
0.00
2.90
2844
3103
2.911143
CCCGACCCAAGGATCAGG
59.089
66.667
0.00
0.00
0.00
3.86
2850
3109
3.596362
CCCAAGGATCAGGGTTTCC
57.404
57.895
8.55
0.00
40.34
3.13
2851
3110
0.033109
CCCAAGGATCAGGGTTTCCC
60.033
60.000
8.55
0.00
45.90
3.97
2860
3119
3.974293
GGGTTTCCCCCGGAGCAA
61.974
66.667
0.73
0.00
45.80
3.91
2861
3120
2.675423
GGTTTCCCCCGGAGCAAC
60.675
66.667
0.73
0.01
31.21
4.17
2862
3121
2.114411
GTTTCCCCCGGAGCAACA
59.886
61.111
0.73
0.00
31.21
3.33
2863
3122
2.114411
TTTCCCCCGGAGCAACAC
59.886
61.111
0.73
0.00
31.21
3.32
2864
3123
3.835790
TTTCCCCCGGAGCAACACG
62.836
63.158
0.73
0.00
31.21
4.49
2871
3130
4.980805
GGAGCAACACGACGGGCA
62.981
66.667
0.00
0.00
0.00
5.36
2872
3131
3.414700
GAGCAACACGACGGGCAG
61.415
66.667
0.00
0.00
0.00
4.85
2880
3139
4.838486
CGACGGGCAGCGAGAGTC
62.838
72.222
0.00
0.00
0.00
3.36
2881
3140
4.838486
GACGGGCAGCGAGAGTCG
62.838
72.222
0.00
0.00
43.89
4.18
2900
3159
3.169198
GGCGACGCCTTCAAGAAG
58.831
61.111
31.30
2.83
46.69
2.85
2910
3169
2.464157
CTTCAAGAAGGGAACGAGCT
57.536
50.000
1.86
0.00
34.87
4.09
2911
3170
2.772287
CTTCAAGAAGGGAACGAGCTT
58.228
47.619
1.86
0.00
34.87
3.74
2912
3171
2.457366
TCAAGAAGGGAACGAGCTTC
57.543
50.000
0.00
0.00
0.00
3.86
2913
3172
1.071605
CAAGAAGGGAACGAGCTTCG
58.928
55.000
0.00
0.00
46.93
3.79
2914
3173
0.670854
AAGAAGGGAACGAGCTTCGC
60.671
55.000
5.63
0.00
45.12
4.70
2915
3174
2.047179
AAGGGAACGAGCTTCGCC
60.047
61.111
5.63
1.00
45.12
5.54
2916
3175
2.781595
GAAGGGAACGAGCTTCGCCA
62.782
60.000
5.63
0.00
45.12
5.69
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
3.156293
AGCTGGATGTATTTTGCACACA
58.844
40.909
0.00
0.00
0.00
3.72
47
48
6.258727
CACACATAGGGAATGAATGACAGTAC
59.741
42.308
0.00
0.00
39.07
2.73
127
128
7.831753
TGTAGGTCTCTGATCTTAGAACTTTG
58.168
38.462
17.15
0.00
40.29
2.77
138
139
5.767665
TGCTTATCTCTGTAGGTCTCTGATC
59.232
44.000
0.00
0.00
0.00
2.92
210
211
3.565905
CTTCCAACAAAGCATGAGGAC
57.434
47.619
0.00
0.00
36.80
3.85
233
234
6.966534
ATGGAGATGTTCAAAACTTGTCTT
57.033
33.333
3.88
0.00
31.90
3.01
254
255
6.484643
ACAACAGATCCGGAGATTGATTAATG
59.515
38.462
20.44
12.37
30.90
1.90
308
309
5.564550
AGATTGCAACTAGATGTTCAAGGT
58.435
37.500
0.00
0.00
36.63
3.50
325
326
8.025445
ACAAACAGATCTTTCACATTAGATTGC
58.975
33.333
0.00
0.00
31.46
3.56
355
356
4.579753
CCACAAATGGGCAAAATCAGTTTT
59.420
37.500
0.00
0.00
43.04
2.43
431
432
8.055181
TGACATCTAATTCCTTAAAGGCATTCT
58.945
33.333
0.00
0.00
33.34
2.40
432
433
8.225603
TGACATCTAATTCCTTAAAGGCATTC
57.774
34.615
0.00
0.00
33.34
2.67
477
539
7.262048
ACTGTGTTTAACTTTACCCACAATTG
58.738
34.615
3.24
3.24
32.96
2.32
485
547
7.988737
ACCAGTTAACTGTGTTTAACTTTACC
58.011
34.615
29.05
0.00
45.85
2.85
500
562
5.099042
ACACTCACTCAAACCAGTTAACT
57.901
39.130
1.12
1.12
0.00
2.24
505
567
5.497474
ACTTTAACACTCACTCAAACCAGT
58.503
37.500
0.00
0.00
0.00
4.00
591
653
5.626142
TCAGCTTAAATCGGCCCATATTAA
58.374
37.500
0.00
0.00
0.00
1.40
610
673
7.087007
TGATCAAGAACGACATCTATATCAGC
58.913
38.462
0.00
0.00
31.89
4.26
974
1038
6.512342
AGCAATGAGAAAAAGAGAAGGATG
57.488
37.500
0.00
0.00
0.00
3.51
975
1039
7.628234
TCTAGCAATGAGAAAAAGAGAAGGAT
58.372
34.615
0.00
0.00
0.00
3.24
976
1040
7.009179
TCTAGCAATGAGAAAAAGAGAAGGA
57.991
36.000
0.00
0.00
0.00
3.36
978
1042
7.679164
GCCATCTAGCAATGAGAAAAAGAGAAG
60.679
40.741
0.00
0.00
0.00
2.85
981
1045
5.589452
AGCCATCTAGCAATGAGAAAAAGAG
59.411
40.000
0.00
0.00
34.23
2.85
1020
1084
4.208460
CACTTCTGTAACTCGCTCGAAAAA
59.792
41.667
0.00
0.00
0.00
1.94
1064
1128
9.915629
GTCCGATAGTGATGAAAAATATAGAGT
57.084
33.333
0.00
0.00
0.00
3.24
1118
1182
7.543756
AGTCTCTACTTTGTTCATAAGAGCTC
58.456
38.462
5.27
5.27
32.38
4.09
1179
1243
0.871722
CCGTGCAATTTTGTCCTCGA
59.128
50.000
0.00
0.00
0.00
4.04
1197
1261
1.218316
CTCCTCCACTACAACGCCC
59.782
63.158
0.00
0.00
0.00
6.13
1369
1433
4.695455
TGGTGCATAAACTCTTGCTCTTAC
59.305
41.667
0.00
0.00
39.60
2.34
1411
1475
3.434984
AGAAGCAAGTCTTTCTCGCAATC
59.565
43.478
0.00
0.00
34.56
2.67
1426
1490
5.972935
TCGGTATACATGAAGAAGAAGCAA
58.027
37.500
5.01
0.00
0.00
3.91
1450
1514
6.639632
TCTGCCCAAATTCTTAATATCTGC
57.360
37.500
0.00
0.00
0.00
4.26
1491
1555
2.239654
TGGACTAAGAATCAAGCCCTGG
59.760
50.000
0.00
0.00
0.00
4.45
1638
1702
4.000325
TGAGGTTCATTGTGTATCCAACG
59.000
43.478
0.00
0.00
0.00
4.10
1671
1735
5.182001
TGAGCTTCCTTTTTCACTTGCTATC
59.818
40.000
0.00
0.00
0.00
2.08
1746
1810
2.312390
GTAAACTGCCCTCCAAAACCA
58.688
47.619
0.00
0.00
0.00
3.67
1795
1859
1.126846
GTGATGTCGCCTCAGAAAACG
59.873
52.381
0.00
0.00
0.00
3.60
1954
2018
5.369404
TGGATGGGATAACAATAAGAGCTCA
59.631
40.000
17.77
0.00
0.00
4.26
1957
2021
5.376625
TGTGGATGGGATAACAATAAGAGC
58.623
41.667
0.00
0.00
0.00
4.09
1961
2025
5.359576
GCAACTGTGGATGGGATAACAATAA
59.640
40.000
0.00
0.00
0.00
1.40
1963
2027
3.701040
GCAACTGTGGATGGGATAACAAT
59.299
43.478
0.00
0.00
0.00
2.71
1981
2045
1.206072
CAGCAGTTCGAGCAGCAAC
59.794
57.895
18.20
0.00
0.00
4.17
2000
2064
3.547746
TGAACCTGACCCTGTTGTTTAC
58.452
45.455
0.00
0.00
0.00
2.01
2010
2074
2.359900
CAGCACTAATGAACCTGACCC
58.640
52.381
0.00
0.00
0.00
4.46
2011
2075
1.740025
GCAGCACTAATGAACCTGACC
59.260
52.381
0.00
0.00
0.00
4.02
2132
2196
8.641541
AGAAAATAATCTGAAGCAGAAAACCAA
58.358
29.630
0.78
0.00
44.04
3.67
2153
2217
8.952278
AGTGTTCACAACTACAATAACAGAAAA
58.048
29.630
5.74
0.00
0.00
2.29
2176
2240
9.294030
GAGGCAAATTTTGAATTACTATCAGTG
57.706
33.333
13.26
0.00
0.00
3.66
2251
2315
9.832445
AGACATGAAGTAAATTATGGTATTCGT
57.168
29.630
0.00
0.00
0.00
3.85
2257
2321
8.978874
TGCATAGACATGAAGTAAATTATGGT
57.021
30.769
0.00
0.00
33.67
3.55
2258
2322
9.888878
CTTGCATAGACATGAAGTAAATTATGG
57.111
33.333
0.00
0.00
33.67
2.74
2259
2323
9.390795
GCTTGCATAGACATGAAGTAAATTATG
57.609
33.333
0.00
0.00
33.67
1.90
2260
2324
8.571336
GGCTTGCATAGACATGAAGTAAATTAT
58.429
33.333
0.00
0.00
33.67
1.28
2262
2326
6.604795
AGGCTTGCATAGACATGAAGTAAATT
59.395
34.615
0.00
0.00
32.58
1.82
2263
2327
6.125029
AGGCTTGCATAGACATGAAGTAAAT
58.875
36.000
0.00
0.00
32.58
1.40
2272
2529
4.708421
ACATTTTGAGGCTTGCATAGACAT
59.292
37.500
4.83
0.00
32.58
3.06
2337
2594
7.715686
AGATCACGAAAAGGAAACTAAACTCTT
59.284
33.333
0.00
0.00
42.68
2.85
2360
2617
6.058183
GGAATCACCATTTACTAGCACAGAT
58.942
40.000
0.00
0.00
38.79
2.90
2453
2712
7.957484
CACAGATCAACTTAGGTCATAAAAACG
59.043
37.037
0.00
0.00
0.00
3.60
2539
2798
6.959606
AATAACTCTGGCTGTATCCCATAT
57.040
37.500
0.00
0.00
0.00
1.78
2574
2833
6.730960
TTTATATATAAAGCGGGGCGAAAG
57.269
37.500
12.90
0.00
0.00
2.62
2575
2834
6.730960
CTTTATATATAAAGCGGGGCGAAA
57.269
37.500
25.10
1.66
41.69
3.46
2589
2848
8.840321
GTTGTTGGTGATCTGTGCTTTATATAT
58.160
33.333
0.00
0.00
0.00
0.86
2590
2849
7.282224
GGTTGTTGGTGATCTGTGCTTTATATA
59.718
37.037
0.00
0.00
0.00
0.86
2591
2850
6.095440
GGTTGTTGGTGATCTGTGCTTTATAT
59.905
38.462
0.00
0.00
0.00
0.86
2592
2851
5.414454
GGTTGTTGGTGATCTGTGCTTTATA
59.586
40.000
0.00
0.00
0.00
0.98
2593
2852
4.218417
GGTTGTTGGTGATCTGTGCTTTAT
59.782
41.667
0.00
0.00
0.00
1.40
2594
2853
3.568007
GGTTGTTGGTGATCTGTGCTTTA
59.432
43.478
0.00
0.00
0.00
1.85
2595
2854
2.362077
GGTTGTTGGTGATCTGTGCTTT
59.638
45.455
0.00
0.00
0.00
3.51
2596
2855
1.956477
GGTTGTTGGTGATCTGTGCTT
59.044
47.619
0.00
0.00
0.00
3.91
2597
2856
1.609208
GGTTGTTGGTGATCTGTGCT
58.391
50.000
0.00
0.00
0.00
4.40
2598
2857
0.598065
GGGTTGTTGGTGATCTGTGC
59.402
55.000
0.00
0.00
0.00
4.57
2599
2858
1.881973
CTGGGTTGTTGGTGATCTGTG
59.118
52.381
0.00
0.00
0.00
3.66
2600
2859
1.494721
ACTGGGTTGTTGGTGATCTGT
59.505
47.619
0.00
0.00
0.00
3.41
2601
2860
2.276732
ACTGGGTTGTTGGTGATCTG
57.723
50.000
0.00
0.00
0.00
2.90
2602
2861
2.708861
TGTACTGGGTTGTTGGTGATCT
59.291
45.455
0.00
0.00
0.00
2.75
2603
2862
3.074412
CTGTACTGGGTTGTTGGTGATC
58.926
50.000
0.00
0.00
0.00
2.92
2604
2863
2.814097
GCTGTACTGGGTTGTTGGTGAT
60.814
50.000
1.65
0.00
0.00
3.06
2605
2864
1.476110
GCTGTACTGGGTTGTTGGTGA
60.476
52.381
1.65
0.00
0.00
4.02
2606
2865
0.951558
GCTGTACTGGGTTGTTGGTG
59.048
55.000
1.65
0.00
0.00
4.17
2607
2866
0.548989
TGCTGTACTGGGTTGTTGGT
59.451
50.000
1.65
0.00
0.00
3.67
2608
2867
0.951558
GTGCTGTACTGGGTTGTTGG
59.048
55.000
1.65
0.00
0.00
3.77
2609
2868
1.333619
GTGTGCTGTACTGGGTTGTTG
59.666
52.381
1.65
0.00
0.00
3.33
2610
2869
1.675552
GTGTGCTGTACTGGGTTGTT
58.324
50.000
1.65
0.00
0.00
2.83
2611
2870
0.531974
CGTGTGCTGTACTGGGTTGT
60.532
55.000
1.65
0.00
0.00
3.32
2612
2871
1.841663
GCGTGTGCTGTACTGGGTTG
61.842
60.000
1.65
0.00
38.39
3.77
2613
2872
1.597027
GCGTGTGCTGTACTGGGTT
60.597
57.895
1.65
0.00
38.39
4.11
2614
2873
2.030562
GCGTGTGCTGTACTGGGT
59.969
61.111
1.65
0.00
38.39
4.51
2615
2874
2.742372
GGCGTGTGCTGTACTGGG
60.742
66.667
1.65
0.00
42.25
4.45
2616
2875
2.030412
TGGCGTGTGCTGTACTGG
59.970
61.111
1.65
0.00
42.25
4.00
2617
2876
2.317609
GGTGGCGTGTGCTGTACTG
61.318
63.158
0.00
0.00
42.25
2.74
2618
2877
2.030562
GGTGGCGTGTGCTGTACT
59.969
61.111
0.00
0.00
42.25
2.73
2619
2878
1.890041
TTGGTGGCGTGTGCTGTAC
60.890
57.895
0.00
0.00
42.25
2.90
2620
2879
1.890041
GTTGGTGGCGTGTGCTGTA
60.890
57.895
0.00
0.00
42.25
2.74
2621
2880
3.209097
GTTGGTGGCGTGTGCTGT
61.209
61.111
0.00
0.00
42.25
4.40
2622
2881
3.208383
TGTTGGTGGCGTGTGCTG
61.208
61.111
0.00
0.00
42.25
4.41
2623
2882
3.209097
GTGTTGGTGGCGTGTGCT
61.209
61.111
0.00
0.00
42.25
4.40
2624
2883
3.513438
TGTGTTGGTGGCGTGTGC
61.513
61.111
0.00
0.00
41.71
4.57
2625
2884
2.402572
TGTGTGTTGGTGGCGTGTG
61.403
57.895
0.00
0.00
0.00
3.82
2626
2885
2.045829
TGTGTGTTGGTGGCGTGT
60.046
55.556
0.00
0.00
0.00
4.49
2627
2886
2.407210
GTGTGTGTTGGTGGCGTG
59.593
61.111
0.00
0.00
0.00
5.34
2628
2887
3.199190
CGTGTGTGTTGGTGGCGT
61.199
61.111
0.00
0.00
0.00
5.68
2629
2888
4.605967
GCGTGTGTGTTGGTGGCG
62.606
66.667
0.00
0.00
0.00
5.69
2630
2889
3.513438
TGCGTGTGTGTTGGTGGC
61.513
61.111
0.00
0.00
0.00
5.01
2631
2890
2.402572
TGTGCGTGTGTGTTGGTGG
61.403
57.895
0.00
0.00
0.00
4.61
2632
2891
1.226267
GTGTGCGTGTGTGTTGGTG
60.226
57.895
0.00
0.00
0.00
4.17
2633
2892
1.672682
TGTGTGCGTGTGTGTTGGT
60.673
52.632
0.00
0.00
0.00
3.67
2634
2893
1.226267
GTGTGTGCGTGTGTGTTGG
60.226
57.895
0.00
0.00
0.00
3.77
2635
2894
1.226267
GGTGTGTGCGTGTGTGTTG
60.226
57.895
0.00
0.00
0.00
3.33
2636
2895
2.403378
GGGTGTGTGCGTGTGTGTT
61.403
57.895
0.00
0.00
0.00
3.32
2637
2896
2.822255
GGGTGTGTGCGTGTGTGT
60.822
61.111
0.00
0.00
0.00
3.72
2638
2897
2.321668
CTTGGGTGTGTGCGTGTGTG
62.322
60.000
0.00
0.00
0.00
3.82
2639
2898
2.045829
TTGGGTGTGTGCGTGTGT
60.046
55.556
0.00
0.00
0.00
3.72
2640
2899
2.715005
CTTGGGTGTGTGCGTGTG
59.285
61.111
0.00
0.00
0.00
3.82
2641
2900
2.515991
CCTTGGGTGTGTGCGTGT
60.516
61.111
0.00
0.00
0.00
4.49
2642
2901
3.964875
GCCTTGGGTGTGTGCGTG
61.965
66.667
0.00
0.00
0.00
5.34
2643
2902
4.497984
TGCCTTGGGTGTGTGCGT
62.498
61.111
0.00
0.00
0.00
5.24
2644
2903
3.663176
CTGCCTTGGGTGTGTGCG
61.663
66.667
0.00
0.00
0.00
5.34
2645
2904
3.297620
CCTGCCTTGGGTGTGTGC
61.298
66.667
0.00
0.00
0.00
4.57
2646
2905
0.327924
TATCCTGCCTTGGGTGTGTG
59.672
55.000
0.00
0.00
0.00
3.82
2647
2906
0.328258
GTATCCTGCCTTGGGTGTGT
59.672
55.000
0.00
0.00
0.00
3.72
2648
2907
0.327924
TGTATCCTGCCTTGGGTGTG
59.672
55.000
0.00
0.00
0.00
3.82
2649
2908
1.072266
TTGTATCCTGCCTTGGGTGT
58.928
50.000
0.00
0.00
0.00
4.16
2650
2909
2.094675
CTTTGTATCCTGCCTTGGGTG
58.905
52.381
0.00
0.00
0.00
4.61
2651
2910
1.005924
CCTTTGTATCCTGCCTTGGGT
59.994
52.381
0.00
0.00
0.00
4.51
2652
2911
1.767759
CCTTTGTATCCTGCCTTGGG
58.232
55.000
0.00
0.00
0.00
4.12
2653
2912
1.106285
GCCTTTGTATCCTGCCTTGG
58.894
55.000
0.00
0.00
0.00
3.61
2654
2913
0.734889
CGCCTTTGTATCCTGCCTTG
59.265
55.000
0.00
0.00
0.00
3.61
2655
2914
1.032114
GCGCCTTTGTATCCTGCCTT
61.032
55.000
0.00
0.00
0.00
4.35
2656
2915
1.452108
GCGCCTTTGTATCCTGCCT
60.452
57.895
0.00
0.00
0.00
4.75
2657
2916
1.452108
AGCGCCTTTGTATCCTGCC
60.452
57.895
2.29
0.00
0.00
4.85
2658
2917
0.744414
TCAGCGCCTTTGTATCCTGC
60.744
55.000
2.29
0.00
0.00
4.85
2659
2918
1.293924
CTCAGCGCCTTTGTATCCTG
58.706
55.000
2.29
0.00
0.00
3.86
2660
2919
0.462759
GCTCAGCGCCTTTGTATCCT
60.463
55.000
2.29
0.00
0.00
3.24
2661
2920
0.744414
TGCTCAGCGCCTTTGTATCC
60.744
55.000
2.29
0.00
38.05
2.59
2662
2921
0.375106
GTGCTCAGCGCCTTTGTATC
59.625
55.000
2.29
0.00
38.05
2.24
2663
2922
0.321564
TGTGCTCAGCGCCTTTGTAT
60.322
50.000
7.99
0.00
38.39
2.29
2664
2923
0.950555
CTGTGCTCAGCGCCTTTGTA
60.951
55.000
7.99
0.00
38.39
2.41
2665
2924
2.203195
TGTGCTCAGCGCCTTTGT
60.203
55.556
7.99
0.00
38.39
2.83
2666
2925
2.559840
CTGTGCTCAGCGCCTTTG
59.440
61.111
7.99
0.00
38.39
2.77
2674
2933
1.650912
GTGGTGTTGCTGTGCTCAG
59.349
57.895
11.44
11.44
43.87
3.35
2675
2934
1.823470
GGTGGTGTTGCTGTGCTCA
60.823
57.895
0.00
0.00
0.00
4.26
2676
2935
2.555547
GGGTGGTGTTGCTGTGCTC
61.556
63.158
0.00
0.00
0.00
4.26
2677
2936
2.519302
GGGTGGTGTTGCTGTGCT
60.519
61.111
0.00
0.00
0.00
4.40
2678
2937
2.690653
TAGGGGTGGTGTTGCTGTGC
62.691
60.000
0.00
0.00
0.00
4.57
2679
2938
0.606401
CTAGGGGTGGTGTTGCTGTG
60.606
60.000
0.00
0.00
0.00
3.66
2680
2939
1.761174
CTAGGGGTGGTGTTGCTGT
59.239
57.895
0.00
0.00
0.00
4.40
2681
2940
1.675641
GCTAGGGGTGGTGTTGCTG
60.676
63.158
0.00
0.00
0.00
4.41
2682
2941
2.153401
TGCTAGGGGTGGTGTTGCT
61.153
57.895
0.00
0.00
0.00
3.91
2683
2942
1.971695
GTGCTAGGGGTGGTGTTGC
60.972
63.158
0.00
0.00
0.00
4.17
2684
2943
0.981183
TAGTGCTAGGGGTGGTGTTG
59.019
55.000
0.00
0.00
0.00
3.33
2685
2944
0.981943
GTAGTGCTAGGGGTGGTGTT
59.018
55.000
0.00
0.00
0.00
3.32
2686
2945
0.178915
TGTAGTGCTAGGGGTGGTGT
60.179
55.000
0.00
0.00
0.00
4.16
2687
2946
0.981183
TTGTAGTGCTAGGGGTGGTG
59.019
55.000
0.00
0.00
0.00
4.17
2688
2947
1.203262
TCTTGTAGTGCTAGGGGTGGT
60.203
52.381
0.00
0.00
0.00
4.16
2689
2948
1.482593
CTCTTGTAGTGCTAGGGGTGG
59.517
57.143
0.00
0.00
0.00
4.61
2690
2949
1.134670
GCTCTTGTAGTGCTAGGGGTG
60.135
57.143
0.00
0.00
32.42
4.61
2691
2950
1.196012
GCTCTTGTAGTGCTAGGGGT
58.804
55.000
0.00
0.00
32.42
4.95
2692
2951
0.466124
GGCTCTTGTAGTGCTAGGGG
59.534
60.000
0.00
0.00
35.27
4.79
2693
2952
1.134670
GTGGCTCTTGTAGTGCTAGGG
60.135
57.143
0.00
0.00
35.27
3.53
2694
2953
1.134670
GGTGGCTCTTGTAGTGCTAGG
60.135
57.143
0.00
0.00
35.27
3.02
2695
2954
1.469940
CGGTGGCTCTTGTAGTGCTAG
60.470
57.143
0.00
0.00
35.27
3.42
2696
2955
0.530744
CGGTGGCTCTTGTAGTGCTA
59.469
55.000
0.00
0.00
35.27
3.49
2697
2956
1.293498
CGGTGGCTCTTGTAGTGCT
59.707
57.895
0.00
0.00
35.27
4.40
2698
2957
1.741770
CCGGTGGCTCTTGTAGTGC
60.742
63.158
0.00
0.00
34.23
4.40
2699
2958
1.079127
CCCGGTGGCTCTTGTAGTG
60.079
63.158
0.00
0.00
0.00
2.74
2700
2959
2.291043
CCCCGGTGGCTCTTGTAGT
61.291
63.158
0.00
0.00
0.00
2.73
2701
2960
2.584608
CCCCGGTGGCTCTTGTAG
59.415
66.667
0.00
0.00
0.00
2.74
2702
2961
3.006728
CCCCCGGTGGCTCTTGTA
61.007
66.667
0.00
0.00
0.00
2.41
2710
2969
2.361992
GTTTAAGGCCCCCGGTGG
60.362
66.667
0.00
0.00
0.00
4.61
2711
2970
2.748647
CGTTTAAGGCCCCCGGTG
60.749
66.667
0.00
0.00
0.00
4.94
2712
2971
3.251509
ACGTTTAAGGCCCCCGGT
61.252
61.111
0.00
0.00
0.00
5.28
2713
2972
2.748647
CACGTTTAAGGCCCCCGG
60.749
66.667
0.00
0.00
0.00
5.73
2714
2973
1.302671
TTCACGTTTAAGGCCCCCG
60.303
57.895
0.00
0.00
0.00
5.73
2715
2974
0.537828
TGTTCACGTTTAAGGCCCCC
60.538
55.000
0.00
0.00
0.00
5.40
2716
2975
0.594602
GTGTTCACGTTTAAGGCCCC
59.405
55.000
0.00
0.00
0.00
5.80
2717
2976
0.236449
CGTGTTCACGTTTAAGGCCC
59.764
55.000
15.81
0.00
0.00
5.80
2718
2977
0.385098
GCGTGTTCACGTTTAAGGCC
60.385
55.000
22.85
0.00
35.26
5.19
2719
2978
0.385098
GGCGTGTTCACGTTTAAGGC
60.385
55.000
22.85
7.48
35.26
4.35
2720
2979
0.938713
TGGCGTGTTCACGTTTAAGG
59.061
50.000
22.85
0.00
35.26
2.69
2721
2980
1.333435
GGTGGCGTGTTCACGTTTAAG
60.333
52.381
22.85
0.00
36.09
1.85
2722
2981
0.656785
GGTGGCGTGTTCACGTTTAA
59.343
50.000
22.85
7.11
36.09
1.52
2723
2982
1.489070
CGGTGGCGTGTTCACGTTTA
61.489
55.000
22.85
9.77
36.09
2.01
2724
2983
2.815298
CGGTGGCGTGTTCACGTTT
61.815
57.895
22.85
0.00
36.09
3.60
2725
2984
3.266376
CGGTGGCGTGTTCACGTT
61.266
61.111
22.85
0.00
36.09
3.99
2726
2985
4.517815
ACGGTGGCGTGTTCACGT
62.518
61.111
22.85
3.14
36.09
4.49
2727
2986
3.995669
CACGGTGGCGTGTTCACG
61.996
66.667
19.03
19.03
36.09
4.35
2728
2987
2.101209
CTTCACGGTGGCGTGTTCAC
62.101
60.000
8.50
0.00
40.41
3.18
2729
2988
1.885388
CTTCACGGTGGCGTGTTCA
60.885
57.895
8.50
0.00
40.41
3.18
2730
2989
1.557443
CTCTTCACGGTGGCGTGTTC
61.557
60.000
8.50
0.00
40.41
3.18
2731
2990
1.594293
CTCTTCACGGTGGCGTGTT
60.594
57.895
8.50
0.00
40.41
3.32
2732
2991
2.023414
TTCTCTTCACGGTGGCGTGT
62.023
55.000
8.50
0.00
40.41
4.49
2733
2992
1.284982
CTTCTCTTCACGGTGGCGTG
61.285
60.000
8.50
0.00
40.84
5.34
2734
2993
1.006102
CTTCTCTTCACGGTGGCGT
60.006
57.895
8.50
0.00
0.00
5.68
2735
2994
0.319555
TTCTTCTCTTCACGGTGGCG
60.320
55.000
8.50
0.00
0.00
5.69
2736
2995
1.433534
CTTCTTCTCTTCACGGTGGC
58.566
55.000
8.50
0.00
0.00
5.01
2737
2996
1.001406
AGCTTCTTCTCTTCACGGTGG
59.999
52.381
8.50
0.00
0.00
4.61
2738
2997
2.447244
AGCTTCTTCTCTTCACGGTG
57.553
50.000
0.56
0.56
0.00
4.94
2739
2998
2.891580
TGTAGCTTCTTCTCTTCACGGT
59.108
45.455
0.00
0.00
0.00
4.83
2740
2999
3.577649
TGTAGCTTCTTCTCTTCACGG
57.422
47.619
0.00
0.00
0.00
4.94
2741
3000
4.731000
CGTATGTAGCTTCTTCTCTTCACG
59.269
45.833
0.00
0.00
0.00
4.35
2742
3001
5.740099
GTCGTATGTAGCTTCTTCTCTTCAC
59.260
44.000
0.00
0.00
0.00
3.18
2743
3002
5.447413
CGTCGTATGTAGCTTCTTCTCTTCA
60.447
44.000
0.00
0.00
0.00
3.02
2744
3003
4.965158
CGTCGTATGTAGCTTCTTCTCTTC
59.035
45.833
0.00
0.00
0.00
2.87
2745
3004
4.731193
GCGTCGTATGTAGCTTCTTCTCTT
60.731
45.833
0.00
0.00
0.00
2.85
2746
3005
3.242804
GCGTCGTATGTAGCTTCTTCTCT
60.243
47.826
0.00
0.00
0.00
3.10
2747
3006
3.037324
GCGTCGTATGTAGCTTCTTCTC
58.963
50.000
0.00
0.00
0.00
2.87
2748
3007
2.683867
AGCGTCGTATGTAGCTTCTTCT
59.316
45.455
0.00
0.00
36.41
2.85
2749
3008
3.037324
GAGCGTCGTATGTAGCTTCTTC
58.963
50.000
0.00
0.00
40.39
2.87
2750
3009
2.223525
GGAGCGTCGTATGTAGCTTCTT
60.224
50.000
0.00
0.00
40.39
2.52
2751
3010
1.334243
GGAGCGTCGTATGTAGCTTCT
59.666
52.381
0.00
0.00
40.39
2.85
2752
3011
1.756367
GGAGCGTCGTATGTAGCTTC
58.244
55.000
0.00
3.44
40.39
3.86
2753
3012
0.029035
CGGAGCGTCGTATGTAGCTT
59.971
55.000
0.00
0.00
40.39
3.74
2754
3013
1.094073
ACGGAGCGTCGTATGTAGCT
61.094
55.000
5.63
6.62
41.98
3.32
2755
3014
0.928908
CACGGAGCGTCGTATGTAGC
60.929
60.000
7.03
0.00
41.86
3.58
2756
3015
0.316772
CCACGGAGCGTCGTATGTAG
60.317
60.000
7.03
0.00
41.86
2.74
2757
3016
1.717791
CCCACGGAGCGTCGTATGTA
61.718
60.000
7.03
0.00
41.86
2.29
2758
3017
2.488355
CCACGGAGCGTCGTATGT
59.512
61.111
7.03
0.00
41.86
2.29
2759
3018
2.278596
CCCACGGAGCGTCGTATG
60.279
66.667
7.03
2.77
41.86
2.39
2760
3019
4.203076
GCCCACGGAGCGTCGTAT
62.203
66.667
7.03
0.00
41.86
3.06
2767
3026
4.785453
CCTTGGAGCCCACGGAGC
62.785
72.222
10.18
0.00
44.56
4.70
2768
3027
4.785453
GCCTTGGAGCCCACGGAG
62.785
72.222
17.45
3.50
44.56
4.63
2771
3030
4.335647
ACTGCCTTGGAGCCCACG
62.336
66.667
0.00
0.00
30.78
4.94
2772
3031
2.674380
CACTGCCTTGGAGCCCAC
60.674
66.667
0.00
0.00
30.78
4.61
2773
3032
4.666253
GCACTGCCTTGGAGCCCA
62.666
66.667
0.00
0.00
0.00
5.36
2784
3043
1.109323
AACCTTCCTGTTGGCACTGC
61.109
55.000
0.00
0.00
0.00
4.40
2785
3044
1.880027
GTAACCTTCCTGTTGGCACTG
59.120
52.381
0.00
0.00
0.00
3.66
2786
3045
1.542547
CGTAACCTTCCTGTTGGCACT
60.543
52.381
0.00
0.00
0.00
4.40
2787
3046
0.872388
CGTAACCTTCCTGTTGGCAC
59.128
55.000
0.00
0.00
0.00
5.01
2788
3047
0.759959
TCGTAACCTTCCTGTTGGCA
59.240
50.000
0.00
0.00
0.00
4.92
2789
3048
1.154197
GTCGTAACCTTCCTGTTGGC
58.846
55.000
0.00
0.00
0.00
4.52
2790
3049
2.140717
GTGTCGTAACCTTCCTGTTGG
58.859
52.381
0.00
0.00
0.00
3.77
2791
3050
2.800544
CAGTGTCGTAACCTTCCTGTTG
59.199
50.000
0.00
0.00
0.00
3.33
2792
3051
2.696707
TCAGTGTCGTAACCTTCCTGTT
59.303
45.455
0.00
0.00
0.00
3.16
2793
3052
2.313317
TCAGTGTCGTAACCTTCCTGT
58.687
47.619
0.00
0.00
0.00
4.00
2794
3053
3.318017
CTTCAGTGTCGTAACCTTCCTG
58.682
50.000
0.00
0.00
0.00
3.86
2795
3054
2.288886
GCTTCAGTGTCGTAACCTTCCT
60.289
50.000
0.00
0.00
0.00
3.36
2796
3055
2.067013
GCTTCAGTGTCGTAACCTTCC
58.933
52.381
0.00
0.00
0.00
3.46
2797
3056
1.719780
CGCTTCAGTGTCGTAACCTTC
59.280
52.381
0.00
0.00
0.00
3.46
2798
3057
1.779569
CGCTTCAGTGTCGTAACCTT
58.220
50.000
0.00
0.00
0.00
3.50
2799
3058
0.666577
GCGCTTCAGTGTCGTAACCT
60.667
55.000
0.00
0.00
0.00
3.50
2800
3059
1.623973
GGCGCTTCAGTGTCGTAACC
61.624
60.000
7.64
0.00
0.00
2.85
2801
3060
1.779683
GGCGCTTCAGTGTCGTAAC
59.220
57.895
7.64
0.00
0.00
2.50
2802
3061
4.255126
GGCGCTTCAGTGTCGTAA
57.745
55.556
7.64
0.00
0.00
3.18
2824
3083
4.547367
GATCCTTGGGTCGGGCGG
62.547
72.222
0.00
0.00
0.00
6.13
2825
3084
3.740128
CTGATCCTTGGGTCGGGCG
62.740
68.421
0.83
0.00
0.00
6.13
2826
3085
2.190578
CTGATCCTTGGGTCGGGC
59.809
66.667
0.83
0.00
0.00
6.13
2827
3086
2.746375
CCCTGATCCTTGGGTCGGG
61.746
68.421
18.62
18.62
40.01
5.14
2828
3087
2.911143
CCCTGATCCTTGGGTCGG
59.089
66.667
1.81
1.81
38.65
4.79
2845
3104
2.114411
TGTTGCTCCGGGGGAAAC
59.886
61.111
11.00
11.15
0.00
2.78
2846
3105
2.114411
GTGTTGCTCCGGGGGAAA
59.886
61.111
11.00
0.00
0.00
3.13
2847
3106
4.323477
CGTGTTGCTCCGGGGGAA
62.323
66.667
3.12
3.12
0.00
3.97
2854
3113
4.980805
TGCCCGTCGTGTTGCTCC
62.981
66.667
0.00
0.00
0.00
4.70
2855
3114
3.414700
CTGCCCGTCGTGTTGCTC
61.415
66.667
0.00
0.00
0.00
4.26
2863
3122
4.838486
GACTCTCGCTGCCCGTCG
62.838
72.222
0.00
0.00
38.35
5.12
2864
3123
4.838486
CGACTCTCGCTGCCCGTC
62.838
72.222
0.00
0.00
38.35
4.79
2884
3143
2.391389
CCCTTCTTGAAGGCGTCGC
61.391
63.158
20.71
9.22
38.63
5.19
2885
3144
0.320421
TTCCCTTCTTGAAGGCGTCG
60.320
55.000
20.71
9.66
38.63
5.12
2886
3145
1.157585
GTTCCCTTCTTGAAGGCGTC
58.842
55.000
20.71
10.58
38.63
5.19
2887
3146
0.602905
CGTTCCCTTCTTGAAGGCGT
60.603
55.000
20.71
0.00
38.63
5.68
2888
3147
0.320421
TCGTTCCCTTCTTGAAGGCG
60.320
55.000
20.71
18.28
38.63
5.52
2889
3148
1.443802
CTCGTTCCCTTCTTGAAGGC
58.556
55.000
20.71
9.02
38.63
4.35
2890
3149
1.002544
AGCTCGTTCCCTTCTTGAAGG
59.997
52.381
19.53
19.53
39.68
3.46
2891
3150
2.464157
AGCTCGTTCCCTTCTTGAAG
57.536
50.000
3.55
3.55
0.00
3.02
2892
3151
2.767505
GAAGCTCGTTCCCTTCTTGAA
58.232
47.619
0.00
0.00
35.67
2.69
2893
3152
1.336887
CGAAGCTCGTTCCCTTCTTGA
60.337
52.381
0.00
0.00
36.25
3.02
2894
3153
1.071605
CGAAGCTCGTTCCCTTCTTG
58.928
55.000
0.00
0.00
36.25
3.02
2895
3154
3.516578
CGAAGCTCGTTCCCTTCTT
57.483
52.632
0.00
0.00
36.25
2.52
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.