>input_sequence_65495
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-----------------------ATGGCTGCTCCGCCAAATGCTTTTTCGAGCGAGTTACAGAAGTGGATCTACAACCGT
TCTGTAGACTCTATATTTTTCATCACTATCGGACCAAAAGCATCTGCAATTAATGCACTTAGAGCTCTTATGAACAAAGT
AGAGACTATTCCTGCAGAAAAAAGAGCTGCGGAGTTAGACCTTCGAGGACAAAATTGCACGGGCGTTGTAGTGGAGGAGG
CAGATGATCATCTTAAGATCTTAACATGTGCCCATCTTATGCAACACGTATTCAAGAGTTCAGAACCCCTTTCGCTTCAA
GATGCTTGTTCACTTTTTTCTGTAAGAGTGTTGTGTGATCATTACGAGCAGAGCTTCCGCGGGCAAAGCAGGGTAAGAGC
AAGAGTTTATGCACCAGCTTCCATGATTGGCATCGATTGCGAGAAAGACTTGCTTCTTCTTCATGTATACCGAGCAGATA
TTAAGAATTTGGGCAGAAGATGTACCAACAGTCACCAGGGCTTGATTCTTAGTCCAACTCCTCCAGAAGCTTTCGACAAG
TGCGCAATGATTTCATGGCCTCCTGGCCTACCTCGAACAGCTGTTGAAGGATCAATTTCTCACCCTTCAAGAACAGTCCG
TGACTTGGAACTTGTGAACACCGTTGGATACACAATGAACCTCACTCAAGTAGTGATAGCAAGTGAAAAAGGAAGCTCAG
GTGCTCCGTTGTTAGATGGTAATGGGAGAATAATTGGATTGTTGCATGGTGGTTTTGGAGGGCAGTTTACATACTTTATC
TCCCATGCTGATATCGGACGTTTTCTGAGGCGACATCACGTGGTACATGGTATGTTCTCACATATGTTTTTTTACTTGTT
TGTGTTGTTACTATTTGTAAATATGCCTTACGAATGCATAAATAACATGCAGGGATATGA--------------------
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-------------------------------------------------------
>chr1B_1_TraesCS1B01G107900
AACATAGAGTTACTGTTTCTATTGTGTGCAAAATACATCCAGCTCCTGTACTGTCATTCATTCCCTATGTGTGTTGACTG
GCAAACTTTCTAGAGTCTCCGTATCTTTAAGTTTGGTCCTTATATTTCAAAGTTCTAAGATCAGAGACCTACAGAGATAA
GCAAAAAAGAAACTCCCCCAATAGGGATGATTGATAGTCATTACTGGTTCGTCCTCATGCTTTGTTGGAAGCAAAGACAA
GTTTTGAACATCTCCATTAATCAATCTCCGGATCTGTTGTACAGCATAAACAAGCCATTAGACTTGAAACCTTGAACATC
TAGTTGCAATCTAATGTGAAAGATCTGTTTGTCACAAAACTGATTTTGCCCATTTGTGGAGTTAAAGTAGTGCATTGTAG
GTTTGTGATATACTCCGTCCCAAAATAAGTGAG-----------------------------------------------
--------------AATGCCTTTAAGGAATTAGATGTCAAATCATTATTTTAAGCCCTCAATTGTGGGTAAAGTTAAACA
CAGTTAACTGGTTTGAGTGAGTGTTAAAGTCTTTTTTTGTTTATTCTATTTATCTGAAATCAAATAGAGTTTCATATTTT
CTTATTTCTGCTTTAATATGGGCCGATT-TAAGCTGATATAGATGTCGTTCTTGATCAAACTCATGCTGCTGTGTAGTGT
CTTTTCTTTTTAAATATGGCAAAAAAGAAGTATTCATTGTACTTCTGGCCTTAGCATTTATTTTGGGAATTTTTACAATT
TATTCTCAGATGTTATGGCTTTTGTTTATGACTTTTTATTTACTGTCTCGCTAGGCAAGGTTGCTGTTTGTTCCTACAGC
TTCCTTTGATCTCATTACTTAGAATCACCACCTCCTCTTCTGTATCCCGCCGCAGGGTTCACCGTGGGTGTCTAATACAA
GGTA-TATGCTCCCTGGACTTCCTCACTTCTGTTCTTTTTGTTTGCATTGTACCAAACTGTAAACTGTACTTAAAAACAT
CCTTCTCTTTTTCTCATTGCTAGATGGCTGCTCCGCCAAATGCTTTTTCGAGCGAGTTACAGAAGTGGATCTACAACCGT
TCTGTAGACTCTATATTTTTCATCACTATCGGACCAAAAGCATCTGCAATTAATGCACTTAGAGCTCTTATGAACAAAGT
AGAGACTATTCCTGCAGAAAAAAGAGCTGCGGAGTTAGACCTTCGAGGACAAAATTGCACGGGCGTTGTAGTGGAGGAGG
CAGATGATCATCTTAAGATCTTAACATGTGCCCATCTTATGCAACACGTATTCAAGAGTTCAGAACCCCTTTCGCTTCAA
GATGCTTGTTCACTTTTTTCTGTAAGAGTGTTGTGTGATCATTACGAGCAGAGCTTCCGCGGGCAAAGCAGGGTAAGAGC
AAGAGTTTATGCACCAGCTTCCATGATTGGCATCGATTGCGAGAAAGACTTGCTTCTTCTTCATGTATACCGAGCAGATA
TTAAGAATTTGGGCAGAAGATGTACCAACAGTCACCAGGGCTTGATTCTTAGTCCAACTCCTCCAGAAGCTTTCGACAAG
TGCGCAATGATTTCATGGCCTCCTGGCCTACCTCGAACAGCTGTTGAAGGATCAATTTCTCACCCTTCAAGAACAGTCCG
TGACTTGGAACTTGTGAACACCGTTGGATACACAATGAACCTCACTCAAGTAGTGATAGCAAGTGAAAAAGGAAGCTCAG
GTGCTCCGTTGTTAGATGGTAATGGGAGAATAATTGGATTGTTGCATGGTGGTTTTGGAGGGCAGTTTACATACTTTATC
TCCCATGCTGATATCGGACGTTTTCTGAGGCGACATCACGTGGTACATGGTATGTTCTCACATATGTTTTTTTACTTGTT
TGTGTTGTTACTATTTGTAAATATGCCTTACGAATGCATAAATAACATGCAGGGATATGAGGTGTTATTTGATCATCCTA
CAGCCCTTGTTCCCTCCTGAGCTCTTATTGTTATCCCATCCACAGTTGCTGCTCGAACTGCTGGTAAACAACAGGGTCAG
GTTCATTAGTGCTGCTCTGTTACCGGTAAGGAACCAACCATAGCATGATGTTGCTAGAGTTTGTTTGTTCTTGATGTTAA
TATCTGGTGTGGAACAGTAAGAATGGATTGATTGTTTGGTTTTCTGCTTCAGATTATTTTCTGTTATTGTAGTTGTGAAC
ACTGATAGTAATTCAAAATTTGCCTCAAAATGCCATTCAGAATACTGTGATTTTATTCTGCGCAAAAAAAAAAAACGAAT
ACCATAA-------------------------------------------------------------------------
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----------------------------------------TTTACTTCATGTCTATGCAAGCCTCAAAATGTGATATGGA
ATACCATAGTTTACTCTCTTGTCCCCTCACCTTAAGAGTTTAGTTTCCTTTTCGTGATCTGTGCTAGTAAATGGTGATTC
CTATCCTGGTTAAAGTAATACGGAGTGCTCTGTGATCAGTTATTCTAACTAGAAGCT--GGCGCGTCCAGTCGTTTTTAT
GACCTAAGTTGATCTGTGTAAATAATAAATCTATGAACAGCAAAATCAGCTGCAACTACTTGTAAAATATAACGGGAATA
TGGGATACAGCCAGAGTTATTACCGAAAAAGGCTTTCGCCCCGCTTTATATATAAAGCACAGATCACCAACAACCCAGTA
CAGCACACGCCACCAACACACACGCACACACCCAAGGCAGGATACAAAGGCGCTGAGCACAGCAACACCACCCCTAGCAC
TACAAGAGCCACCGGGGGCCTTAAACGTGAACACGCCACCGTGAAGAGAAGAAGCTACATACGACGCTCCGTGGGCTCCA
AGGCAGTGCCAACAGGAAGGTTACGACACTGAAGCGCCGCCACCGCCCGACCCAAGGATCAGGGTTTCCCCCGGAGCAAC
ACGACGGGCAGCGAGAGTCGCGGCGACGCCTTCAAGAAGGGAACGAGCTTCGCCA
>chr1A_1
AACATAGAGTTACTGTTTCTATCGTGTGCAAAATACATCCAGCTCCTATACTGTCATTCATTCCCTATGTGTGTTGACTG
GCAAACTTTCTAGAGTCTCCGTATCTTTAAGTTTGGTCCTTATATTTAAAAGTTCTAAAATCAGAGAACTACAGAGATAA
GCAAAAA-GAAACTCCCCCAATAGGGATGATTGATAGTCATTACTGGTTCATCCTCATGCTTTGTTGGAAGCACAGACAA
GTTTTGAACATCTCTATTAATCAATCTTCGGATCTGTTGTACAGCATAAACAAGCCATTAGACTTGAAGCCTTGAACATC
TAGTTACAATCTAATGTGAAAGATCTGTTTGTCACCAAACTGAATTTGCCCATTTGTGGAGTTAAAGTAGTGCATTGTAG
GTTTGGGATATACTCCGTCCCAAAATAAGTGTCTCAACTTTAGTACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGT
AGCATTTTTGTTCAAATGCCTTTAAGGAATTAGATGTCAAATCATTATTTTAAGCCCTTAATTGTGAGTAAAGTTAAACA
CGGTTAGCTGGCTTGAGTAAGTGTTG-AGTCTTTTTTTGTTTATTCTATCTATATGAAATCAAATAGAGTTTCATATTTT
CTTATTTCTGCTGTAATATGGGCCGATTATAAACTGATATAGATGTCGTTCTTGATCAAACTCATGCTGCTGTGTAGTGT
CTTTTCTTTTTAACTATGTTAAAAAAGAAGTATTCATTGTACTTCTGGCCTTAGCATTCATTTTGGGGG-TTTTACTATT
TATTCTCAGATGTTATGGCTTTTGTTTATGACTTTTTATTTACTGTCACGCTAAGCAAGGTTGCTGTTTGTTCCTACAGC
TTCCTTTGATCTCATTACTTAGAATCACCACCTCCTCTTCTGTATCCCGACGCAGGGTTGACCGTGGGTGTCTAATACAA
GGTAGTATGCTCCCTGGACTTCCTCACTTCTGTTCTTTTTGTTTGCATTGTACCAAACTGTAAACTGTACTTAAAAAATC
CTTT-TCTTTTTCTCATTGCTAGATGGCTGCTCCGCCAAATGCATTTTCGAGCGAGTTACAGAAGTGGATCTACAACCGT
TCTGTAGGCTCTATATTTTTCATCACTATCGGACCAAAAGCATCTGCAATTAATGCACTTATAGCTCTTATGAACAAAGT
AGAGACTGTTCCTGCAGAAAAAAGAGCTGCGGAGTTAGACCTCCGAGGACAAAATTGCACAGGCGTTGTAGTGGAGGAGG
CAGATGATCATCTTAAGATCTTAACATGTGCCCATCTTATGCAACACGTATTCAAGAGTTCAGAACCCCTTTCGCTTAAA
GATGCTTGTTCGCTTTTTTCTGTAAGAGTGTTGTGTGATCATTACGAGCAGAGCTTCCGCGGGCAAAGCAGGATAAGAGC
AAGAGTTTATGCACCAGCTTCCATGATTGGCATCAATTGCGAGAAAGACCTGCTTCTTCTTCATGTATACCGACCAGATA
TTAAGAATTTGGGCAGAAGATGTACCAACAGTCATCAGGGCTTGATTCTTAGTCCAACTCCTCCAGAAGCTTTCGACAAG
TGCGCAATGATTTCATGGCCTCCTGGCCTACCTCGAACAGCTGTTGAAGGATCAATTTCTCACCCTTCAAGAACAGTCCG
TGACTTGGAACTTGTGAACACTGTTGGATACACAATGAACCTCACTCAAGTAGTAATAGCAAGTGAAAAAGGAAGCTCAG
GTGCTCCGTTGTTAGATGGTAATGGGAGAATAATTGGATTGTTGCATGGCGGTTTTGGAGGGCAGTTTACATACTTTATC
TCCCATGCTGATATCGGATGTTTTCTGAGGCGACATCACGTGGTACATGGTATGTTATCACATATGTTTTTTTACTTGTT
TGTGTTGTTACTATTTGTAAATATGCCTTACGAAAGCATAAATAACATGCAGGGATATGAGGTGTTATTTGATCATCCTA
CAGCCCTTGTTCCCTCCCGATCTCCTGTTGTTATCCCATCCACAATTGCTGCTCGAACTGCTGTTAAACAACA--GTCAG
GTTCATTAGTGCTGCTCTGTTACCGGTAAGGAACCAACCATAGCATGATGTTGCTAGAGTTTGTTTGTTCTTGATGTTAA
TATCTGGTGTGGAACAGTAAGAATGGATTGATTGTATGGTTTTCTGCTTCAGATTACTTTCTGTTATTGTAGTTGTGAAA
ACTGATAGTAATTCAAAATTTGCCTCAAAATGCCATTCAGAATACTGTGATTT-ATTCAGCGCAAAATGCCATTCATAAT
TTACTTCTGGTCCGGGGAAGGGGAACCTTGGCGCAGTGATAAAGCTGCTGCCTTGTGACCATGAGGTCACGGGTTCAAAT
CCTGAAAACAGCCTCTTACAGAAATGTAGGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCAGACCCTTCCCCGGATCC
TGCGCAAGCGGGAGCTACATGCACCGGGCTGCCCTTTTTTTTTACTTCCTGTCTATGCAAGCCTCAAAATGTGATATGGA
ATACCATAGTTTACTCTCTTGTCCCCTCACCTT-AGAGTTTAGTTTCCTTTTCGTGGTCTGTGCTAGTAAATGGTGATTC
CTATCCTGGTTAAAGTAATACGGAGTGCTCTGTGATCAGTTATTCTAACTAGATGCTGGGGCGCGTCCAGTTGTTTTTAT
GACCTAAGTTGATCTGTGTAAATAATAAATCTATGAACAGCAAAATCAGCTGCAACCACTTGTAAAATATAACGGGAGTA
TGGGATACAGCCAGAGTTATT-----------------------------------------------------------
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>SNPs
----------------------S------------------------S--------------------------------
-----------------------------------------------S----------S--------S------------
-------S------------------------------------------S----------------------S------
--------------S------------S----------------------------------------S-----------
-----S-----------------------------S-------S------------------------------------
-----S-------------------------SS-----------------------------------------------
----------------------------------------------------------S-------S-------------
-S----S----S------S------SS----------------------S---S--------------------------
------------S-------------------S-----------------------------------------------
-------------S----SS--------------------------------------S--------SSS------S---
-----------------------------------------------S-----S--------------------------
-------------------------------------------------S---------S--------------------
-----------------------------------------------------------------------------SSS
-S--S--------------------------------------S------------------------------------
-------S-----------------------------------------------------S------------------
-------S----------------------------------S-----------------S-------------------
-----------------------------------------------------------------------------S--
-----------S------------------------------------------------------------S-------
----------------------------------S--------------S-----------------------S------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------------S--------------------------------S-------------------------
-------------------------------------------------S------------------------------
------------------S-------------------------------------S-----------------------
----------------------------------S---------------------------------------------
-----------------S--S---S-S-----------------S------------------S---------SS-----
--------------------------------------------------------------------------------
-----------------------------------S--------------------S----------------------S
-----------------------------------------------------S----S--------SSSS-SSSSS---
SSSS-SS-------------------------------------------------------------------------
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------------------------------------------------S-------------------------------
---------------------------------S----------------------S-----------------------
-----------------------------------------------------S-----------------S--------
--------------------------------------------------------S--------------------S--
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_930
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------------------------------CCTCCTCTTCTGTATCCCGC------------------------------
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>reverse_3012
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---------------------------------------------------AAGCTACATACGACGCTCCG---------
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-------------------------------------------------------
