Multiple sequence alignment - TraesCS1B01G089800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G089800 chr1B 100.000 3753 0 0 1 3753 90696548 90700300 0.000000e+00 6931
1 TraesCS1B01G089800 chr1B 93.425 1095 59 2 2084 3177 90878720 90879802 0.000000e+00 1611
2 TraesCS1B01G089800 chr1B 95.477 597 19 4 1489 2085 90877872 90878460 0.000000e+00 946
3 TraesCS1B01G089800 chr1B 89.125 754 22 29 644 1390 90877151 90877851 0.000000e+00 883
4 TraesCS1B01G089800 chr1B 93.750 112 6 1 3182 3293 90879842 90879952 2.320000e-37 167
5 TraesCS1B01G089800 chr1B 88.991 109 7 4 1382 1486 547200272 547200165 3.040000e-26 130
6 TraesCS1B01G089800 chr1A 88.342 1707 167 17 1489 3182 54001293 54002980 0.000000e+00 2021
7 TraesCS1B01G089800 chr1A 86.188 724 51 14 647 1363 54000573 54001254 0.000000e+00 737
8 TraesCS1B01G089800 chr1A 89.787 235 21 3 3298 3530 54003170 54003403 7.880000e-77 298
9 TraesCS1B01G089800 chr1A 85.284 299 24 12 249 529 54000271 54000567 1.320000e-74 291
10 TraesCS1B01G089800 chr1A 93.162 117 8 0 3182 3298 54003015 54003131 4.980000e-39 172
11 TraesCS1B01G089800 chr1D 88.438 1626 131 24 1489 3088 55410013 55411607 0.000000e+00 1908
12 TraesCS1B01G089800 chr1D 86.252 1062 84 26 111 1125 55408732 55409778 0.000000e+00 1096
13 TraesCS1B01G089800 chr1D 86.878 221 23 5 1176 1390 55409772 55409992 3.750000e-60 243
14 TraesCS1B01G089800 chr7D 90.708 226 19 1 3530 3753 265293005 265293230 2.190000e-77 300
15 TraesCS1B01G089800 chr7D 89.744 234 13 6 3531 3753 249036806 249036573 4.740000e-74 289
16 TraesCS1B01G089800 chr7D 88.987 227 22 2 3530 3753 503272896 503272670 1.030000e-70 278
17 TraesCS1B01G089800 chr5B 89.823 226 20 2 3531 3753 173351980 173351755 1.710000e-73 287
18 TraesCS1B01G089800 chr4D 89.732 224 20 3 3533 3753 373328343 373328120 2.210000e-72 283
19 TraesCS1B01G089800 chr3D 90.135 223 15 4 3530 3751 469717548 469717332 2.210000e-72 283
20 TraesCS1B01G089800 chr3D 89.333 225 20 2 3531 3751 358006680 358006456 2.850000e-71 279
21 TraesCS1B01G089800 chr3D 94.505 91 5 0 1399 1489 378925916 378925826 1.410000e-29 141
22 TraesCS1B01G089800 chr3D 88.991 109 7 5 1379 1483 114668696 114668803 3.040000e-26 130
23 TraesCS1B01G089800 chr3D 88.889 108 8 4 1379 1483 603574595 603574489 3.040000e-26 130
24 TraesCS1B01G089800 chr5D 89.035 228 21 2 3530 3753 292539252 292539025 2.850000e-71 279
25 TraesCS1B01G089800 chr3A 89.035 228 22 2 3529 3753 306748593 306748820 2.850000e-71 279
26 TraesCS1B01G089800 chr2A 81.509 265 45 4 1703 1966 71550950 71550689 8.160000e-52 215
27 TraesCS1B01G089800 chr2A 80.224 268 47 5 1702 1966 118226757 118227021 2.960000e-46 196
28 TraesCS1B01G089800 chr2A 92.373 118 6 3 1000 1115 589656391 589656507 8.340000e-37 165
29 TraesCS1B01G089800 chr4A 81.557 244 39 6 1728 1969 455277205 455276966 2.960000e-46 196
30 TraesCS1B01G089800 chr4A 89.423 104 10 1 1380 1483 647386201 647386099 3.040000e-26 130
31 TraesCS1B01G089800 chr4B 81.667 240 38 6 1728 1966 86477204 86476970 1.060000e-45 195
32 TraesCS1B01G089800 chr6A 79.779 272 48 6 1698 1966 591182810 591182543 1.380000e-44 191
33 TraesCS1B01G089800 chr5A 80.000 265 48 5 1704 1966 617127750 617128011 1.380000e-44 191
34 TraesCS1B01G089800 chr2D 92.373 118 6 3 1000 1115 446234080 446234196 8.340000e-37 165
35 TraesCS1B01G089800 chr2B 93.578 109 5 2 1000 1107 525248890 525248997 1.080000e-35 161
36 TraesCS1B01G089800 chr2B 90.476 105 7 3 1381 1483 159487997 159487894 6.540000e-28 135
37 TraesCS1B01G089800 chr2B 89.623 106 10 1 1379 1483 713407063 713407168 2.350000e-27 134
38 TraesCS1B01G089800 chr7B 91.089 101 6 3 1388 1486 650133115 650133016 2.350000e-27 134
39 TraesCS1B01G089800 chr3B 91.000 100 8 1 1388 1486 64541016 64541115 2.350000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G089800 chr1B 90696548 90700300 3752 False 6931.000000 6931 100.000000 1 3753 1 chr1B.!!$F1 3752
1 TraesCS1B01G089800 chr1B 90877151 90879952 2801 False 901.750000 1611 92.944250 644 3293 4 chr1B.!!$F2 2649
2 TraesCS1B01G089800 chr1A 54000271 54003403 3132 False 703.800000 2021 88.552600 249 3530 5 chr1A.!!$F1 3281
3 TraesCS1B01G089800 chr1D 55408732 55411607 2875 False 1082.333333 1908 87.189333 111 3088 3 chr1D.!!$F1 2977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 715 0.109272 TAGGAACAAGAGCGTGCTCG 60.109 55.0 15.6 3.31 46.9 5.03 F
1530 1616 0.108019 GAGAGGTTGTGGAAACGGGT 59.892 55.0 0.0 0.00 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2786 0.179103 AATAGTTTCGGGGCCGTACG 60.179 55.0 8.69 8.69 40.74 3.67 R
3213 3621 0.106521 GAGCTCATCCCTCTCTTGCC 59.893 60.0 9.40 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.978099 ATAAAAATGAAAATGCTCCTACCCT 57.022 32.000 0.00 0.00 0.00 4.34
39 40 6.686484 AAAAATGAAAATGCTCCTACCCTT 57.314 33.333 0.00 0.00 0.00 3.95
40 41 6.686484 AAAATGAAAATGCTCCTACCCTTT 57.314 33.333 0.00 0.00 0.00 3.11
41 42 5.665916 AATGAAAATGCTCCTACCCTTTG 57.334 39.130 0.00 0.00 0.00 2.77
42 43 3.430453 TGAAAATGCTCCTACCCTTTGG 58.570 45.455 0.00 0.00 37.80 3.28
52 53 4.440145 CCCTTTGGGTGGATGTGG 57.560 61.111 0.00 0.00 38.25 4.17
53 54 1.305213 CCCTTTGGGTGGATGTGGG 60.305 63.158 0.00 0.00 38.25 4.61
54 55 1.773635 CCTTTGGGTGGATGTGGGA 59.226 57.895 0.00 0.00 0.00 4.37
55 56 0.114168 CCTTTGGGTGGATGTGGGAA 59.886 55.000 0.00 0.00 0.00 3.97
56 57 1.549203 CTTTGGGTGGATGTGGGAAG 58.451 55.000 0.00 0.00 0.00 3.46
57 58 0.114168 TTTGGGTGGATGTGGGAAGG 59.886 55.000 0.00 0.00 0.00 3.46
58 59 1.071314 TTGGGTGGATGTGGGAAGGT 61.071 55.000 0.00 0.00 0.00 3.50
59 60 1.000896 GGGTGGATGTGGGAAGGTG 60.001 63.158 0.00 0.00 0.00 4.00
60 61 1.000896 GGTGGATGTGGGAAGGTGG 60.001 63.158 0.00 0.00 0.00 4.61
61 62 1.678970 GTGGATGTGGGAAGGTGGC 60.679 63.158 0.00 0.00 0.00 5.01
62 63 2.043953 GGATGTGGGAAGGTGGCC 60.044 66.667 0.00 0.00 0.00 5.36
63 64 2.763215 GATGTGGGAAGGTGGCCA 59.237 61.111 0.00 0.00 0.00 5.36
64 65 1.076549 GATGTGGGAAGGTGGCCAA 59.923 57.895 7.24 0.00 0.00 4.52
65 66 0.541764 GATGTGGGAAGGTGGCCAAA 60.542 55.000 7.24 0.00 0.00 3.28
66 67 0.831711 ATGTGGGAAGGTGGCCAAAC 60.832 55.000 7.24 3.12 0.00 2.93
67 68 1.456705 GTGGGAAGGTGGCCAAACA 60.457 57.895 7.24 0.00 0.00 2.83
68 69 1.456705 TGGGAAGGTGGCCAAACAC 60.457 57.895 7.24 0.31 40.60 3.32
69 70 1.456705 GGGAAGGTGGCCAAACACA 60.457 57.895 7.24 0.00 43.08 3.72
70 71 1.739667 GGAAGGTGGCCAAACACAC 59.260 57.895 7.24 0.00 43.08 3.82
71 72 1.040339 GGAAGGTGGCCAAACACACA 61.040 55.000 7.24 0.00 43.08 3.72
72 73 1.039856 GAAGGTGGCCAAACACACAT 58.960 50.000 7.24 0.00 43.08 3.21
73 74 1.412343 GAAGGTGGCCAAACACACATT 59.588 47.619 7.24 0.00 43.29 2.71
74 75 2.373335 AGGTGGCCAAACACACATTA 57.627 45.000 7.24 0.00 43.08 1.90
75 76 2.672098 AGGTGGCCAAACACACATTAA 58.328 42.857 7.24 0.00 43.08 1.40
76 77 3.238597 AGGTGGCCAAACACACATTAAT 58.761 40.909 7.24 0.00 43.08 1.40
77 78 3.258123 AGGTGGCCAAACACACATTAATC 59.742 43.478 7.24 0.00 43.08 1.75
78 79 3.006323 GGTGGCCAAACACACATTAATCA 59.994 43.478 7.24 0.00 43.08 2.57
79 80 4.502259 GGTGGCCAAACACACATTAATCAA 60.502 41.667 7.24 0.00 43.08 2.57
80 81 4.447389 GTGGCCAAACACACATTAATCAAC 59.553 41.667 7.24 0.00 40.99 3.18
81 82 4.100035 TGGCCAAACACACATTAATCAACA 59.900 37.500 0.61 0.00 0.00 3.33
82 83 5.221601 TGGCCAAACACACATTAATCAACAT 60.222 36.000 0.61 0.00 0.00 2.71
83 84 5.120519 GGCCAAACACACATTAATCAACATG 59.879 40.000 0.00 0.00 0.00 3.21
84 85 5.695816 GCCAAACACACATTAATCAACATGT 59.304 36.000 0.00 0.00 33.72 3.21
85 86 6.202570 GCCAAACACACATTAATCAACATGTT 59.797 34.615 4.92 4.92 30.90 2.71
86 87 7.254727 GCCAAACACACATTAATCAACATGTTT 60.255 33.333 8.77 0.00 39.05 2.83
87 88 8.274939 CCAAACACACATTAATCAACATGTTTC 58.725 33.333 8.77 0.00 37.02 2.78
88 89 7.945033 AACACACATTAATCAACATGTTTCC 57.055 32.000 8.77 0.00 30.90 3.13
89 90 6.454795 ACACACATTAATCAACATGTTTCCC 58.545 36.000 8.77 0.00 30.90 3.97
90 91 6.041409 ACACACATTAATCAACATGTTTCCCA 59.959 34.615 8.77 0.00 30.90 4.37
91 92 6.927936 CACACATTAATCAACATGTTTCCCAA 59.072 34.615 8.77 1.76 30.90 4.12
92 93 7.116662 CACACATTAATCAACATGTTTCCCAAG 59.883 37.037 8.77 0.00 30.90 3.61
93 94 7.015098 ACACATTAATCAACATGTTTCCCAAGA 59.985 33.333 8.77 2.21 30.90 3.02
94 95 8.036575 CACATTAATCAACATGTTTCCCAAGAT 58.963 33.333 8.77 4.70 30.90 2.40
95 96 8.036575 ACATTAATCAACATGTTTCCCAAGATG 58.963 33.333 8.77 9.77 39.18 2.90
96 97 7.773489 TTAATCAACATGTTTCCCAAGATGA 57.227 32.000 8.77 0.53 36.02 2.92
97 98 6.669125 AATCAACATGTTTCCCAAGATGAA 57.331 33.333 8.77 0.00 36.02 2.57
98 99 6.669125 ATCAACATGTTTCCCAAGATGAAA 57.331 33.333 8.77 0.00 36.02 2.69
99 100 6.477053 TCAACATGTTTCCCAAGATGAAAA 57.523 33.333 8.77 0.00 36.02 2.29
100 101 6.882656 TCAACATGTTTCCCAAGATGAAAAA 58.117 32.000 8.77 0.00 36.02 1.94
124 125 0.315251 GAAAACTGACCCAGCTTGCC 59.685 55.000 0.00 0.00 34.37 4.52
135 136 0.320771 CAGCTTGCCAGTACTCGGTT 60.321 55.000 11.47 0.00 0.00 4.44
137 138 1.298859 GCTTGCCAGTACTCGGTTGG 61.299 60.000 11.47 3.94 35.06 3.77
150 151 1.479323 TCGGTTGGCAGAGTATACCAC 59.521 52.381 0.00 0.00 31.83 4.16
157 159 2.361119 GGCAGAGTATACCACATCGTCA 59.639 50.000 0.00 0.00 0.00 4.35
179 181 4.112341 CCGTCGACGTCCTGGTCC 62.112 72.222 33.49 0.00 37.74 4.46
180 182 3.054503 CGTCGACGTCCTGGTCCT 61.055 66.667 29.08 0.00 33.30 3.85
181 183 2.567049 GTCGACGTCCTGGTCCTG 59.433 66.667 10.58 0.00 33.30 3.86
182 184 2.675423 TCGACGTCCTGGTCCTGG 60.675 66.667 10.58 8.53 33.30 4.45
183 185 2.989824 CGACGTCCTGGTCCTGGT 60.990 66.667 10.58 0.00 33.30 4.00
184 186 2.971452 GACGTCCTGGTCCTGGTC 59.029 66.667 14.11 8.17 0.00 4.02
212 214 2.483876 CGACGGCCATACATGATCTTT 58.516 47.619 2.24 0.00 0.00 2.52
218 220 5.483937 ACGGCCATACATGATCTTTATCCTA 59.516 40.000 2.24 0.00 0.00 2.94
219 221 5.812642 CGGCCATACATGATCTTTATCCTAC 59.187 44.000 2.24 0.00 0.00 3.18
232 234 6.078664 TCTTTATCCTACCATCTCCTTCCTC 58.921 44.000 0.00 0.00 0.00 3.71
234 236 3.776731 TCCTACCATCTCCTTCCTCAA 57.223 47.619 0.00 0.00 0.00 3.02
243 245 1.819288 CTCCTTCCTCAACGCAGACTA 59.181 52.381 0.00 0.00 0.00 2.59
245 247 2.029290 TCCTTCCTCAACGCAGACTAAC 60.029 50.000 0.00 0.00 0.00 2.34
248 250 3.462483 TCCTCAACGCAGACTAACAAA 57.538 42.857 0.00 0.00 0.00 2.83
334 340 6.207614 TCCAACGAATCCATTGTTTATGTCAA 59.792 34.615 0.00 0.00 31.99 3.18
454 465 0.741221 GAGAGCAAACCCAGCTACGG 60.741 60.000 0.00 0.00 43.58 4.02
470 490 1.477553 ACGGTAAGCCTCGGTTGATA 58.522 50.000 0.00 0.00 0.00 2.15
475 495 0.839946 AAGCCTCGGTTGATATGCCT 59.160 50.000 0.00 0.00 0.00 4.75
489 510 4.655649 TGATATGCCTCAGTTACATGGAGT 59.344 41.667 0.00 0.00 0.00 3.85
531 572 2.414179 CCGGCGGCTATACGAACA 59.586 61.111 15.42 0.00 35.47 3.18
537 578 1.712350 GCGGCTATACGAACATACGTG 59.288 52.381 0.00 0.00 46.02 4.49
540 581 1.712350 GCTATACGAACATACGTGCCG 59.288 52.381 0.00 0.00 46.02 5.69
556 597 0.739813 GCCGTGATAGCAAACCGTCT 60.740 55.000 0.00 0.00 0.00 4.18
558 599 0.370273 CGTGATAGCAAACCGTCTGC 59.630 55.000 0.00 0.00 40.24 4.26
577 618 0.439985 CCAATGCGTGAACGAGTGAG 59.560 55.000 7.10 0.00 43.02 3.51
587 628 0.320247 AACGAGTGAGCAGGCTTCAG 60.320 55.000 0.00 0.00 0.00 3.02
588 629 1.181741 ACGAGTGAGCAGGCTTCAGA 61.182 55.000 0.00 0.00 0.00 3.27
593 634 1.803555 GTGAGCAGGCTTCAGAGAAAC 59.196 52.381 0.00 0.00 0.00 2.78
610 651 4.679662 AGAAACGAACGTGAGAAAGAAGA 58.320 39.130 0.00 0.00 0.00 2.87
614 655 6.449448 AACGAACGTGAGAAAGAAGATAAC 57.551 37.500 0.00 0.00 0.00 1.89
616 657 5.981315 ACGAACGTGAGAAAGAAGATAACAA 59.019 36.000 0.00 0.00 0.00 2.83
618 659 7.010738 ACGAACGTGAGAAAGAAGATAACAAAA 59.989 33.333 0.00 0.00 0.00 2.44
640 685 2.803030 TAGAACGTGGACTAGCCTCT 57.197 50.000 0.00 0.00 37.63 3.69
670 715 0.109272 TAGGAACAAGAGCGTGCTCG 60.109 55.000 15.60 3.31 46.90 5.03
744 796 3.679980 GCTTATGGTGTAGTGCATATCCG 59.320 47.826 0.00 0.00 0.00 4.18
806 860 0.601046 CCGGATCATGTGATGGACCG 60.601 60.000 0.00 12.23 43.30 4.79
871 925 6.851330 CCGTTAAATCATCTTCTTATTTCGCC 59.149 38.462 0.00 0.00 0.00 5.54
907 961 4.140599 CAAGCTCGGAGGCTCGCT 62.141 66.667 8.69 9.00 42.24 4.93
973 1031 3.283684 CGGACGGCAGGCAAACAA 61.284 61.111 0.00 0.00 0.00 2.83
979 1037 1.582610 CGGCAGGCAAACAACCGTAT 61.583 55.000 0.00 0.00 39.05 3.06
1142 1217 5.652891 TGTCTCTCTGTACCTGGTTTATCTC 59.347 44.000 3.84 0.00 0.00 2.75
1143 1218 5.889289 GTCTCTCTGTACCTGGTTTATCTCT 59.111 44.000 3.84 0.00 0.00 3.10
1146 1221 7.455008 TCTCTCTGTACCTGGTTTATCTCTTTT 59.545 37.037 3.84 0.00 0.00 2.27
1396 1481 7.328737 AGAATACATTAACATATACTCCCCGC 58.671 38.462 0.00 0.00 0.00 6.13
1400 1485 2.400467 AACATATACTCCCCGCTCCT 57.600 50.000 0.00 0.00 0.00 3.69
1404 1489 4.228824 ACATATACTCCCCGCTCCTAAAA 58.771 43.478 0.00 0.00 0.00 1.52
1408 1493 3.840124 ACTCCCCGCTCCTAAAATAAG 57.160 47.619 0.00 0.00 0.00 1.73
1410 1495 3.118371 ACTCCCCGCTCCTAAAATAAGTG 60.118 47.826 0.00 0.00 0.00 3.16
1415 1500 5.395990 CCCCGCTCCTAAAATAAGTGTCTTA 60.396 44.000 0.00 0.00 0.00 2.10
1416 1501 6.110707 CCCGCTCCTAAAATAAGTGTCTTAA 58.889 40.000 0.00 0.00 0.00 1.85
1417 1502 6.036844 CCCGCTCCTAAAATAAGTGTCTTAAC 59.963 42.308 0.00 0.00 0.00 2.01
1418 1503 6.817140 CCGCTCCTAAAATAAGTGTCTTAACT 59.183 38.462 0.00 0.00 0.00 2.24
1419 1504 7.333672 CCGCTCCTAAAATAAGTGTCTTAACTT 59.666 37.037 0.00 0.00 42.89 2.66
1420 1505 8.718734 CGCTCCTAAAATAAGTGTCTTAACTTT 58.281 33.333 0.00 0.00 40.77 2.66
1421 1506 9.827411 GCTCCTAAAATAAGTGTCTTAACTTTG 57.173 33.333 0.00 0.00 40.77 2.77
1431 1516 8.590719 AAGTGTCTTAACTTTGTACTAGCTTC 57.409 34.615 0.00 0.00 37.05 3.86
1432 1517 7.723324 AGTGTCTTAACTTTGTACTAGCTTCA 58.277 34.615 0.00 0.00 0.00 3.02
1433 1518 7.868415 AGTGTCTTAACTTTGTACTAGCTTCAG 59.132 37.037 0.00 0.00 0.00 3.02
1434 1519 7.652507 GTGTCTTAACTTTGTACTAGCTTCAGT 59.347 37.037 0.00 0.00 0.00 3.41
1435 1520 8.853126 TGTCTTAACTTTGTACTAGCTTCAGTA 58.147 33.333 0.00 0.00 0.00 2.74
1459 1544 7.624360 ACAAATTTGTACTGAACTCAAGACA 57.376 32.000 22.10 0.00 40.16 3.41
1460 1545 7.472543 ACAAATTTGTACTGAACTCAAGACAC 58.527 34.615 22.10 0.00 40.16 3.67
1461 1546 7.336931 ACAAATTTGTACTGAACTCAAGACACT 59.663 33.333 22.10 0.00 40.16 3.55
1462 1547 7.865706 AATTTGTACTGAACTCAAGACACTT 57.134 32.000 0.00 0.00 0.00 3.16
1463 1548 8.958119 AATTTGTACTGAACTCAAGACACTTA 57.042 30.769 0.00 0.00 0.00 2.24
1464 1549 9.561069 AATTTGTACTGAACTCAAGACACTTAT 57.439 29.630 0.00 0.00 0.00 1.73
1465 1550 8.958119 TTTGTACTGAACTCAAGACACTTATT 57.042 30.769 0.00 0.00 0.00 1.40
1466 1551 8.958119 TTGTACTGAACTCAAGACACTTATTT 57.042 30.769 0.00 0.00 0.00 1.40
1467 1552 8.958119 TGTACTGAACTCAAGACACTTATTTT 57.042 30.769 0.00 0.00 0.00 1.82
1468 1553 8.826710 TGTACTGAACTCAAGACACTTATTTTG 58.173 33.333 0.00 0.00 0.00 2.44
1469 1554 7.264373 ACTGAACTCAAGACACTTATTTTGG 57.736 36.000 0.00 0.00 0.00 3.28
1470 1555 6.263168 ACTGAACTCAAGACACTTATTTTGGG 59.737 38.462 0.00 0.00 0.00 4.12
1471 1556 6.361433 TGAACTCAAGACACTTATTTTGGGA 58.639 36.000 0.00 0.00 0.00 4.37
1472 1557 7.004086 TGAACTCAAGACACTTATTTTGGGAT 58.996 34.615 0.00 0.00 0.00 3.85
1473 1558 6.824305 ACTCAAGACACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
1474 1559 5.711976 ACTCAAGACACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
1475 1560 5.886609 TCAAGACACTTATTTTGGGATGGA 58.113 37.500 0.00 0.00 0.00 3.41
1476 1561 5.945784 TCAAGACACTTATTTTGGGATGGAG 59.054 40.000 0.00 0.00 0.00 3.86
1477 1562 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
1478 1563 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
1479 1564 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
1480 1565 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
1481 1566 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
1482 1567 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
1483 1568 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
1484 1569 2.352561 TTTGGGATGGAGGGAGTACA 57.647 50.000 0.00 0.00 0.00 2.90
1485 1570 2.352561 TTGGGATGGAGGGAGTACAA 57.647 50.000 0.00 0.00 0.00 2.41
1486 1571 1.580059 TGGGATGGAGGGAGTACAAC 58.420 55.000 0.00 0.00 0.00 3.32
1487 1572 1.203376 TGGGATGGAGGGAGTACAACA 60.203 52.381 0.00 0.00 0.00 3.33
1530 1616 0.108019 GAGAGGTTGTGGAAACGGGT 59.892 55.000 0.00 0.00 0.00 5.28
1607 1693 2.088104 TCGGTGAGCCTATCATTCCT 57.912 50.000 0.00 0.00 40.92 3.36
1886 1975 6.742109 AGGCTCAATGGAAAAATTCATATCG 58.258 36.000 0.00 0.00 0.00 2.92
1900 1989 6.968131 ATTCATATCGTATCCATGAAACGG 57.032 37.500 12.42 0.00 40.86 4.44
1934 2027 8.534333 TCCTTATACGAAATGAGATACATTGC 57.466 34.615 0.00 0.00 46.90 3.56
2025 2118 3.805066 TGAACCCATGAATTCCAGTCA 57.195 42.857 2.27 0.00 0.00 3.41
2059 2152 6.929049 GCATCAGTGTTGTATGCCTATTACTA 59.071 38.462 3.68 0.00 40.06 1.82
2284 2638 2.487265 GCCACCTGAATTGATATCCGGT 60.487 50.000 0.00 0.00 35.11 5.28
2357 2711 8.585471 AGTTTGGTGATCAATACATCTTCAAT 57.415 30.769 0.00 0.00 34.98 2.57
2432 2786 2.325583 TTATGAGGTTCGCATGGGTC 57.674 50.000 9.86 0.46 0.00 4.46
2740 3097 4.023291 ACCTAGAGAAGAAAGAGCCTGAG 58.977 47.826 0.00 0.00 0.00 3.35
2754 3111 0.693049 CCTGAGGCCCAACAGTAACT 59.307 55.000 17.07 0.00 32.93 2.24
2762 3119 1.283613 CCCAACAGTAACTATGGCCCA 59.716 52.381 0.00 0.00 0.00 5.36
2768 3125 2.676342 CAGTAACTATGGCCCAACGAAC 59.324 50.000 0.00 0.00 0.00 3.95
2794 3151 9.025020 CACTGTAGACACTATTTATGTAAGCAG 57.975 37.037 0.00 0.00 32.66 4.24
2821 3178 3.321497 GTTTCGGGCAATTTGTAATGCA 58.679 40.909 0.00 0.00 44.32 3.96
2840 3198 5.073192 TGCATGTAATCGTACGTTTATGC 57.927 39.130 25.74 25.74 32.40 3.14
2845 3203 7.474332 GCATGTAATCGTACGTTTATGCATTAG 59.526 37.037 26.67 15.43 32.40 1.73
2864 3222 6.237755 GCATTAGTTACACTGTCGGAATACAC 60.238 42.308 0.00 0.00 0.00 2.90
2879 3237 4.284746 GGAATACACCAAAATGGAAACCCA 59.715 41.667 2.85 0.00 40.96 4.51
2888 3246 6.900186 ACCAAAATGGAAACCCATATGATACA 59.100 34.615 3.65 0.00 43.38 2.29
2892 3250 7.823745 AATGGAAACCCATATGATACAGAAC 57.176 36.000 3.65 0.00 43.38 3.01
2939 3297 1.398390 GAAGGACGTCAATGTGCATCC 59.602 52.381 18.91 0.00 31.86 3.51
2952 3310 1.225426 GCATCCTCTGTCCATGCCA 59.775 57.895 0.00 0.00 37.54 4.92
2956 3314 0.543277 TCCTCTGTCCATGCCACATC 59.457 55.000 0.00 0.00 0.00 3.06
2977 3335 2.363680 CCGACAACTCTAGGCATCAGAT 59.636 50.000 0.00 0.00 0.00 2.90
3034 3407 2.276201 CGTCCGATAAGGTGCATGAAA 58.724 47.619 0.00 0.00 41.99 2.69
3056 3429 8.520351 TGAAAGTCGTCTGATCTACTAATCAAA 58.480 33.333 0.00 0.00 35.32 2.69
3062 3435 5.749109 GTCTGATCTACTAATCAAACCCACG 59.251 44.000 0.00 0.00 35.32 4.94
3079 3452 2.734606 CCACGCGAGATTTGTTGAGTTA 59.265 45.455 15.93 0.00 0.00 2.24
3088 3461 7.530861 GCGAGATTTGTTGAGTTAGTTTGTTAG 59.469 37.037 0.00 0.00 0.00 2.34
3095 3468 9.781834 TTGTTGAGTTAGTTTGTTAGTTGATTG 57.218 29.630 0.00 0.00 0.00 2.67
3096 3469 8.952278 TGTTGAGTTAGTTTGTTAGTTGATTGT 58.048 29.630 0.00 0.00 0.00 2.71
3143 3516 5.482175 ACCAGACTATCCTGAATATACAGCC 59.518 44.000 0.00 0.00 36.29 4.85
3189 3597 4.177165 TCGAACGAGGCTGTTTATAACA 57.823 40.909 0.00 0.00 39.52 2.41
3192 3600 6.331845 TCGAACGAGGCTGTTTATAACATTA 58.668 36.000 0.00 0.00 41.26 1.90
3197 3605 7.045416 ACGAGGCTGTTTATAACATTATGACA 58.955 34.615 0.00 0.00 41.26 3.58
3303 3750 9.559958 CCAACTTAGCTAATTCATGTGTAAAAG 57.440 33.333 6.64 0.00 0.00 2.27
3304 3751 9.559958 CAACTTAGCTAATTCATGTGTAAAAGG 57.440 33.333 6.64 0.00 0.00 3.11
3318 3765 0.319469 AAAAGGGAATTTGCACGCCG 60.319 50.000 0.00 0.00 0.00 6.46
3319 3766 2.153547 AAAGGGAATTTGCACGCCGG 62.154 55.000 0.00 0.00 0.00 6.13
3377 3825 1.338136 ATGATCGGCCTCCCTCGTTT 61.338 55.000 0.00 0.00 0.00 3.60
3387 3835 3.564225 GCCTCCCTCGTTTATTGTATTGG 59.436 47.826 0.00 0.00 0.00 3.16
3408 3856 1.251251 AACCTGCAGATTGTCCAAGC 58.749 50.000 17.39 0.00 0.00 4.01
3411 3859 0.725686 CTGCAGATTGTCCAAGCTCG 59.274 55.000 8.42 0.00 34.42 5.03
3412 3860 0.674581 TGCAGATTGTCCAAGCTCGG 60.675 55.000 0.00 0.00 34.42 4.63
3437 3885 7.872483 GGTATGATCTTGTTGAAACCAATTGTT 59.128 33.333 4.43 0.00 39.43 2.83
3448 3896 3.457610 ACCAATTGTTTGTGCAAGAGG 57.542 42.857 4.43 0.00 34.46 3.69
3454 3902 3.281727 TGTTTGTGCAAGAGGAAGTCT 57.718 42.857 0.00 0.00 36.94 3.24
3463 3911 3.707793 CAAGAGGAAGTCTATACCGCAC 58.292 50.000 0.00 0.00 32.65 5.34
3471 3919 5.048224 GGAAGTCTATACCGCACAGCTATAA 60.048 44.000 0.00 0.00 0.00 0.98
3497 3945 6.166984 TCAACAAAAATAAACATCAGGGCA 57.833 33.333 0.00 0.00 0.00 5.36
3531 3979 9.995003 ATTCTCCAATTACTTGCATTAAAAACA 57.005 25.926 0.00 0.00 0.00 2.83
3532 3980 8.810652 TCTCCAATTACTTGCATTAAAAACAC 57.189 30.769 0.00 0.00 0.00 3.32
3533 3981 8.637986 TCTCCAATTACTTGCATTAAAAACACT 58.362 29.630 0.00 0.00 0.00 3.55
3534 3982 8.586570 TCCAATTACTTGCATTAAAAACACTG 57.413 30.769 0.00 0.00 0.00 3.66
3535 3983 7.655328 TCCAATTACTTGCATTAAAAACACTGG 59.345 33.333 0.00 0.00 0.00 4.00
3536 3984 7.440856 CCAATTACTTGCATTAAAAACACTGGT 59.559 33.333 0.00 0.00 0.00 4.00
3537 3985 9.469807 CAATTACTTGCATTAAAAACACTGGTA 57.530 29.630 0.00 0.00 0.00 3.25
3538 3986 9.471084 AATTACTTGCATTAAAAACACTGGTAC 57.529 29.630 0.00 0.00 0.00 3.34
3539 3987 6.458232 ACTTGCATTAAAAACACTGGTACA 57.542 33.333 0.00 0.00 0.00 2.90
3540 3988 6.868622 ACTTGCATTAAAAACACTGGTACAA 58.131 32.000 0.00 0.00 38.70 2.41
3541 3989 7.496747 ACTTGCATTAAAAACACTGGTACAAT 58.503 30.769 0.00 0.00 38.70 2.71
3542 3990 7.437862 ACTTGCATTAAAAACACTGGTACAATG 59.562 33.333 0.00 0.00 43.42 2.82
3543 3991 7.043961 TGCATTAAAAACACTGGTACAATGA 57.956 32.000 0.00 0.00 38.08 2.57
3544 3992 7.492524 TGCATTAAAAACACTGGTACAATGAA 58.507 30.769 0.00 0.00 38.08 2.57
3545 3993 7.651304 TGCATTAAAAACACTGGTACAATGAAG 59.349 33.333 0.00 0.00 38.08 3.02
3546 3994 7.651704 GCATTAAAAACACTGGTACAATGAAGT 59.348 33.333 0.00 0.00 38.08 3.01
3547 3995 8.967218 CATTAAAAACACTGGTACAATGAAGTG 58.033 33.333 0.00 3.08 38.08 3.16
3548 3996 4.568152 AAACACTGGTACAATGAAGTGC 57.432 40.909 0.00 0.00 38.08 4.40
3549 3997 3.492102 ACACTGGTACAATGAAGTGCT 57.508 42.857 0.00 0.00 38.08 4.40
3550 3998 4.617253 ACACTGGTACAATGAAGTGCTA 57.383 40.909 0.00 0.00 38.08 3.49
3551 3999 5.165961 ACACTGGTACAATGAAGTGCTAT 57.834 39.130 0.00 0.00 38.08 2.97
3552 4000 6.294361 ACACTGGTACAATGAAGTGCTATA 57.706 37.500 0.00 0.00 38.08 1.31
3553 4001 6.106673 ACACTGGTACAATGAAGTGCTATAC 58.893 40.000 0.00 0.00 38.08 1.47
3554 4002 6.106003 CACTGGTACAATGAAGTGCTATACA 58.894 40.000 0.00 0.00 38.08 2.29
3555 4003 6.593770 CACTGGTACAATGAAGTGCTATACAA 59.406 38.462 0.00 0.00 38.08 2.41
3556 4004 7.119116 CACTGGTACAATGAAGTGCTATACAAA 59.881 37.037 0.00 0.00 38.08 2.83
3557 4005 7.119262 ACTGGTACAATGAAGTGCTATACAAAC 59.881 37.037 0.00 0.00 38.70 2.93
3558 4006 6.091577 TGGTACAATGAAGTGCTATACAAACG 59.908 38.462 0.00 0.00 31.92 3.60
3559 4007 6.091713 GGTACAATGAAGTGCTATACAAACGT 59.908 38.462 0.00 0.00 0.00 3.99
3560 4008 6.554334 ACAATGAAGTGCTATACAAACGTT 57.446 33.333 0.00 0.00 0.00 3.99
3561 4009 6.966021 ACAATGAAGTGCTATACAAACGTTT 58.034 32.000 7.96 7.96 0.00 3.60
3562 4010 7.422399 ACAATGAAGTGCTATACAAACGTTTT 58.578 30.769 11.66 5.92 0.00 2.43
3563 4011 7.918562 ACAATGAAGTGCTATACAAACGTTTTT 59.081 29.630 11.66 7.99 0.00 1.94
3564 4012 9.388346 CAATGAAGTGCTATACAAACGTTTTTA 57.612 29.630 11.66 10.27 0.00 1.52
3565 4013 9.953697 AATGAAGTGCTATACAAACGTTTTTAA 57.046 25.926 11.66 0.00 0.00 1.52
3566 4014 8.770850 TGAAGTGCTATACAAACGTTTTTAAC 57.229 30.769 11.66 4.85 0.00 2.01
3567 4015 7.856894 TGAAGTGCTATACAAACGTTTTTAACC 59.143 33.333 11.66 3.44 0.00 2.85
3568 4016 6.671190 AGTGCTATACAAACGTTTTTAACCC 58.329 36.000 11.66 3.11 0.00 4.11
3569 4017 5.858049 GTGCTATACAAACGTTTTTAACCCC 59.142 40.000 11.66 1.47 0.00 4.95
3570 4018 5.769162 TGCTATACAAACGTTTTTAACCCCT 59.231 36.000 11.66 0.00 0.00 4.79
3571 4019 6.264970 TGCTATACAAACGTTTTTAACCCCTT 59.735 34.615 11.66 0.00 0.00 3.95
3572 4020 7.147312 GCTATACAAACGTTTTTAACCCCTTT 58.853 34.615 11.66 0.00 0.00 3.11
3573 4021 7.326789 GCTATACAAACGTTTTTAACCCCTTTC 59.673 37.037 11.66 0.00 0.00 2.62
3574 4022 4.757594 ACAAACGTTTTTAACCCCTTTCC 58.242 39.130 11.66 0.00 0.00 3.13
3575 4023 3.713858 AACGTTTTTAACCCCTTTCCG 57.286 42.857 0.00 0.00 0.00 4.30
3576 4024 1.337703 ACGTTTTTAACCCCTTTCCGC 59.662 47.619 0.00 0.00 0.00 5.54
3577 4025 1.663730 CGTTTTTAACCCCTTTCCGCG 60.664 52.381 0.00 0.00 0.00 6.46
3578 4026 1.608109 GTTTTTAACCCCTTTCCGCGA 59.392 47.619 8.23 0.00 0.00 5.87
3579 4027 1.237533 TTTTAACCCCTTTCCGCGAC 58.762 50.000 8.23 0.00 0.00 5.19
3580 4028 0.950071 TTTAACCCCTTTCCGCGACG 60.950 55.000 8.23 0.00 0.00 5.12
3592 4040 2.426261 GCGACGGCGTTTTGAACC 60.426 61.111 16.19 0.00 40.36 3.62
3596 4044 2.127906 CGGCGTTTTGAACCGTCG 60.128 61.111 0.00 0.00 45.93 5.12
3597 4045 2.426261 GGCGTTTTGAACCGTCGC 60.426 61.111 0.00 0.00 44.95 5.19
3598 4046 2.426261 GCGTTTTGAACCGTCGCC 60.426 61.111 0.00 0.00 40.83 5.54
3599 4047 3.015677 CGTTTTGAACCGTCGCCA 58.984 55.556 0.00 0.00 0.00 5.69
3600 4048 1.352404 CGTTTTGAACCGTCGCCAA 59.648 52.632 0.00 0.00 0.00 4.52
3601 4049 0.656205 CGTTTTGAACCGTCGCCAAG 60.656 55.000 0.00 0.00 0.00 3.61
3602 4050 0.379316 GTTTTGAACCGTCGCCAAGT 59.621 50.000 0.00 0.00 0.00 3.16
3603 4051 0.378962 TTTTGAACCGTCGCCAAGTG 59.621 50.000 0.00 0.00 0.00 3.16
3604 4052 0.462225 TTTGAACCGTCGCCAAGTGA 60.462 50.000 0.00 0.00 0.00 3.41
3605 4053 0.878523 TTGAACCGTCGCCAAGTGAG 60.879 55.000 0.00 0.00 0.00 3.51
3606 4054 1.300697 GAACCGTCGCCAAGTGAGT 60.301 57.895 0.00 0.00 0.00 3.41
3607 4055 1.557443 GAACCGTCGCCAAGTGAGTG 61.557 60.000 0.00 0.00 0.00 3.51
3608 4056 2.029073 CCGTCGCCAAGTGAGTGT 59.971 61.111 0.00 0.00 0.00 3.55
3609 4057 2.310233 CCGTCGCCAAGTGAGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
3610 4058 1.591594 CGTCGCCAAGTGAGTGTGT 60.592 57.895 0.00 0.00 0.00 3.72
3611 4059 1.821241 CGTCGCCAAGTGAGTGTGTG 61.821 60.000 0.00 0.00 0.00 3.82
3612 4060 1.887242 TCGCCAAGTGAGTGTGTGC 60.887 57.895 0.00 0.00 0.00 4.57
3613 4061 2.633657 GCCAAGTGAGTGTGTGCG 59.366 61.111 0.00 0.00 0.00 5.34
3614 4062 1.887242 GCCAAGTGAGTGTGTGCGA 60.887 57.895 0.00 0.00 0.00 5.10
3615 4063 1.230635 GCCAAGTGAGTGTGTGCGAT 61.231 55.000 0.00 0.00 0.00 4.58
3616 4064 1.939381 GCCAAGTGAGTGTGTGCGATA 60.939 52.381 0.00 0.00 0.00 2.92
3617 4065 1.995484 CCAAGTGAGTGTGTGCGATAG 59.005 52.381 0.00 0.00 0.00 2.08
3618 4066 1.995484 CAAGTGAGTGTGTGCGATAGG 59.005 52.381 0.00 0.00 0.00 2.57
3619 4067 0.532573 AGTGAGTGTGTGCGATAGGG 59.467 55.000 0.00 0.00 0.00 3.53
3620 4068 0.460284 GTGAGTGTGTGCGATAGGGG 60.460 60.000 0.00 0.00 0.00 4.79
3621 4069 0.902984 TGAGTGTGTGCGATAGGGGT 60.903 55.000 0.00 0.00 0.00 4.95
3622 4070 0.179108 GAGTGTGTGCGATAGGGGTC 60.179 60.000 0.00 0.00 0.00 4.46
3623 4071 1.153429 GTGTGTGCGATAGGGGTCC 60.153 63.158 0.00 0.00 0.00 4.46
3624 4072 1.305802 TGTGTGCGATAGGGGTCCT 60.306 57.895 0.00 0.00 37.71 3.85
3625 4073 0.907704 TGTGTGCGATAGGGGTCCTT 60.908 55.000 0.00 0.00 34.61 3.36
3626 4074 0.179081 GTGTGCGATAGGGGTCCTTC 60.179 60.000 0.00 0.00 34.61 3.46
3627 4075 1.335132 TGTGCGATAGGGGTCCTTCC 61.335 60.000 0.00 0.00 34.61 3.46
3636 4084 4.934989 GGTCCTTCCCACACGATC 57.065 61.111 0.00 0.00 0.00 3.69
3637 4085 1.221021 GGTCCTTCCCACACGATCC 59.779 63.158 0.00 0.00 0.00 3.36
3638 4086 1.550130 GGTCCTTCCCACACGATCCA 61.550 60.000 0.00 0.00 0.00 3.41
3639 4087 0.323629 GTCCTTCCCACACGATCCAA 59.676 55.000 0.00 0.00 0.00 3.53
3640 4088 1.060729 TCCTTCCCACACGATCCAAA 58.939 50.000 0.00 0.00 0.00 3.28
3641 4089 1.422024 TCCTTCCCACACGATCCAAAA 59.578 47.619 0.00 0.00 0.00 2.44
3642 4090 2.158593 TCCTTCCCACACGATCCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
3643 4091 2.030274 CCTTCCCACACGATCCAAAAAC 60.030 50.000 0.00 0.00 0.00 2.43
3644 4092 1.611519 TCCCACACGATCCAAAAACC 58.388 50.000 0.00 0.00 0.00 3.27
3645 4093 0.239879 CCCACACGATCCAAAAACCG 59.760 55.000 0.00 0.00 0.00 4.44
3646 4094 0.948678 CCACACGATCCAAAAACCGT 59.051 50.000 0.00 0.00 35.46 4.83
3647 4095 1.069500 CCACACGATCCAAAAACCGTC 60.069 52.381 0.00 0.00 32.50 4.79
3648 4096 0.863144 ACACGATCCAAAAACCGTCG 59.137 50.000 0.00 0.00 38.21 5.12
3649 4097 0.165079 CACGATCCAAAAACCGTCGG 59.835 55.000 10.48 10.48 36.68 4.79
3650 4098 0.952010 ACGATCCAAAAACCGTCGGG 60.952 55.000 17.28 0.00 36.68 5.14
3651 4099 1.641123 CGATCCAAAAACCGTCGGGG 61.641 60.000 17.28 6.70 43.62 5.73
3652 4100 0.321830 GATCCAAAAACCGTCGGGGA 60.322 55.000 17.28 12.35 39.97 4.81
3653 4101 0.330267 ATCCAAAAACCGTCGGGGAT 59.670 50.000 17.28 14.15 39.97 3.85
3654 4102 0.982704 TCCAAAAACCGTCGGGGATA 59.017 50.000 17.28 0.00 39.97 2.59
3655 4103 1.065998 TCCAAAAACCGTCGGGGATAG 60.066 52.381 17.28 2.26 39.97 2.08
3656 4104 1.375551 CAAAAACCGTCGGGGATAGG 58.624 55.000 17.28 0.00 39.97 2.57
3657 4105 1.065998 CAAAAACCGTCGGGGATAGGA 60.066 52.381 17.28 0.00 39.97 2.94
3658 4106 1.278537 AAAACCGTCGGGGATAGGAA 58.721 50.000 17.28 0.00 39.97 3.36
3659 4107 0.828677 AAACCGTCGGGGATAGGAAG 59.171 55.000 17.28 0.00 39.97 3.46
3660 4108 1.683418 AACCGTCGGGGATAGGAAGC 61.683 60.000 17.28 0.00 39.97 3.86
3661 4109 2.735237 CGTCGGGGATAGGAAGCC 59.265 66.667 0.00 0.00 0.00 4.35
3662 4110 2.131709 CGTCGGGGATAGGAAGCCA 61.132 63.158 0.00 0.00 30.46 4.75
3663 4111 1.472662 CGTCGGGGATAGGAAGCCAT 61.473 60.000 0.00 0.00 30.46 4.40
3664 4112 0.035458 GTCGGGGATAGGAAGCCATG 59.965 60.000 0.00 0.00 30.46 3.66
3665 4113 1.127567 TCGGGGATAGGAAGCCATGG 61.128 60.000 7.63 7.63 30.46 3.66
3666 4114 1.418908 CGGGGATAGGAAGCCATGGT 61.419 60.000 14.67 0.00 30.46 3.55
3667 4115 0.111253 GGGGATAGGAAGCCATGGTG 59.889 60.000 14.67 0.00 30.46 4.17
3668 4116 0.538287 GGGATAGGAAGCCATGGTGC 60.538 60.000 14.67 0.00 30.46 5.01
3669 4117 0.183492 GGATAGGAAGCCATGGTGCA 59.817 55.000 14.67 0.00 0.00 4.57
3670 4118 1.602311 GATAGGAAGCCATGGTGCAG 58.398 55.000 14.67 0.00 0.00 4.41
3671 4119 1.141657 GATAGGAAGCCATGGTGCAGA 59.858 52.381 14.67 0.00 0.00 4.26
3672 4120 0.543277 TAGGAAGCCATGGTGCAGAG 59.457 55.000 14.67 0.00 0.00 3.35
3673 4121 1.751927 GGAAGCCATGGTGCAGAGG 60.752 63.158 14.67 0.00 0.00 3.69
3676 4124 4.437587 GCCATGGTGCAGAGGCCT 62.438 66.667 14.67 3.86 41.25 5.19
3677 4125 2.357836 CCATGGTGCAGAGGCCTT 59.642 61.111 6.77 0.00 40.13 4.35
3678 4126 2.050350 CCATGGTGCAGAGGCCTTG 61.050 63.158 6.77 8.72 40.13 3.61
3679 4127 2.362120 ATGGTGCAGAGGCCTTGC 60.362 61.111 24.52 24.52 40.13 4.01
3696 4144 5.095490 GCCTTGCCAAATATAATCGTATGC 58.905 41.667 0.00 0.00 0.00 3.14
3697 4145 5.323900 CCTTGCCAAATATAATCGTATGCG 58.676 41.667 0.00 0.00 39.92 4.73
3711 4159 2.281002 TGCGATGCAGCACACACT 60.281 55.556 1.53 0.00 42.92 3.55
3712 4160 1.005156 TGCGATGCAGCACACACTA 60.005 52.632 1.53 0.00 42.92 2.74
3713 4161 0.602372 TGCGATGCAGCACACACTAA 60.602 50.000 1.53 0.00 42.92 2.24
3714 4162 0.516877 GCGATGCAGCACACACTAAA 59.483 50.000 1.53 0.00 37.05 1.85
3715 4163 1.131126 GCGATGCAGCACACACTAAAT 59.869 47.619 1.53 0.00 37.05 1.40
3716 4164 2.414559 GCGATGCAGCACACACTAAATT 60.415 45.455 1.53 0.00 37.05 1.82
3717 4165 3.419915 CGATGCAGCACACACTAAATTC 58.580 45.455 1.53 0.00 0.00 2.17
3718 4166 3.125829 CGATGCAGCACACACTAAATTCT 59.874 43.478 1.53 0.00 0.00 2.40
3719 4167 4.378770 CGATGCAGCACACACTAAATTCTT 60.379 41.667 1.53 0.00 0.00 2.52
3720 4168 4.916983 TGCAGCACACACTAAATTCTTT 57.083 36.364 0.00 0.00 0.00 2.52
3721 4169 4.858935 TGCAGCACACACTAAATTCTTTC 58.141 39.130 0.00 0.00 0.00 2.62
3722 4170 4.337836 TGCAGCACACACTAAATTCTTTCA 59.662 37.500 0.00 0.00 0.00 2.69
3723 4171 5.009911 TGCAGCACACACTAAATTCTTTCAT 59.990 36.000 0.00 0.00 0.00 2.57
3724 4172 6.206438 TGCAGCACACACTAAATTCTTTCATA 59.794 34.615 0.00 0.00 0.00 2.15
3725 4173 6.524586 GCAGCACACACTAAATTCTTTCATAC 59.475 38.462 0.00 0.00 0.00 2.39
3726 4174 6.738200 CAGCACACACTAAATTCTTTCATACG 59.262 38.462 0.00 0.00 0.00 3.06
3727 4175 6.426937 AGCACACACTAAATTCTTTCATACGT 59.573 34.615 0.00 0.00 0.00 3.57
3728 4176 6.519761 GCACACACTAAATTCTTTCATACGTG 59.480 38.462 0.00 0.00 0.00 4.49
3729 4177 7.572759 CACACACTAAATTCTTTCATACGTGT 58.427 34.615 0.00 0.00 33.82 4.49
3730 4178 7.993238 CACACTAAATTCTTTCATACGTGTG 57.007 36.000 5.87 5.87 42.15 3.82
3731 4179 7.015289 CACACTAAATTCTTTCATACGTGTGG 58.985 38.462 12.66 0.00 43.36 4.17
3732 4180 6.148811 ACACTAAATTCTTTCATACGTGTGGG 59.851 38.462 12.66 3.83 32.51 4.61
3733 4181 6.370442 CACTAAATTCTTTCATACGTGTGGGA 59.630 38.462 12.66 6.04 0.00 4.37
3734 4182 7.065803 CACTAAATTCTTTCATACGTGTGGGAT 59.934 37.037 12.66 0.00 0.00 3.85
3735 4183 6.436843 AAATTCTTTCATACGTGTGGGATC 57.563 37.500 12.66 0.00 0.00 3.36
3736 4184 3.159353 TCTTTCATACGTGTGGGATCG 57.841 47.619 12.66 0.00 0.00 3.69
3737 4185 2.159156 TCTTTCATACGTGTGGGATCGG 60.159 50.000 12.66 0.00 0.00 4.18
3738 4186 1.187974 TTCATACGTGTGGGATCGGT 58.812 50.000 12.66 0.00 0.00 4.69
3739 4187 0.458260 TCATACGTGTGGGATCGGTG 59.542 55.000 12.66 0.00 0.00 4.94
3740 4188 0.458260 CATACGTGTGGGATCGGTGA 59.542 55.000 4.09 0.00 0.00 4.02
3741 4189 1.068588 CATACGTGTGGGATCGGTGAT 59.931 52.381 4.09 0.00 0.00 3.06
3742 4190 1.187974 TACGTGTGGGATCGGTGATT 58.812 50.000 0.00 0.00 0.00 2.57
3743 4191 1.187974 ACGTGTGGGATCGGTGATTA 58.812 50.000 0.00 0.00 0.00 1.75
3744 4192 1.760613 ACGTGTGGGATCGGTGATTAT 59.239 47.619 0.00 0.00 0.00 1.28
3745 4193 2.960384 ACGTGTGGGATCGGTGATTATA 59.040 45.455 0.00 0.00 0.00 0.98
3746 4194 3.243636 ACGTGTGGGATCGGTGATTATAC 60.244 47.826 0.00 0.00 0.00 1.47
3747 4195 3.314553 GTGTGGGATCGGTGATTATACG 58.685 50.000 0.00 0.00 0.00 3.06
3748 4196 2.960384 TGTGGGATCGGTGATTATACGT 59.040 45.455 0.00 0.00 0.00 3.57
3749 4197 3.385433 TGTGGGATCGGTGATTATACGTT 59.615 43.478 0.00 0.00 0.00 3.99
3750 4198 4.141892 TGTGGGATCGGTGATTATACGTTT 60.142 41.667 0.00 0.00 0.00 3.60
3751 4199 4.446719 GTGGGATCGGTGATTATACGTTTC 59.553 45.833 0.00 0.00 0.00 2.78
3752 4200 4.342951 TGGGATCGGTGATTATACGTTTCT 59.657 41.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.487442 AGGGTAGGAGCATTTTCATTTTTATAA 57.513 29.630 0.00 0.00 0.00 0.98
13 14 9.487442 AAGGGTAGGAGCATTTTCATTTTTATA 57.513 29.630 0.00 0.00 0.00 0.98
14 15 7.978099 AGGGTAGGAGCATTTTCATTTTTAT 57.022 32.000 0.00 0.00 0.00 1.40
15 16 7.790782 AAGGGTAGGAGCATTTTCATTTTTA 57.209 32.000 0.00 0.00 0.00 1.52
16 17 6.686484 AAGGGTAGGAGCATTTTCATTTTT 57.314 33.333 0.00 0.00 0.00 1.94
17 18 6.466812 CAAAGGGTAGGAGCATTTTCATTTT 58.533 36.000 0.00 0.00 26.25 1.82
18 19 5.046376 CCAAAGGGTAGGAGCATTTTCATTT 60.046 40.000 0.00 0.00 26.25 2.32
19 20 4.467438 CCAAAGGGTAGGAGCATTTTCATT 59.533 41.667 0.00 0.00 26.25 2.57
20 21 4.026052 CCAAAGGGTAGGAGCATTTTCAT 58.974 43.478 0.00 0.00 26.25 2.57
21 22 3.430453 CCAAAGGGTAGGAGCATTTTCA 58.570 45.455 0.00 0.00 26.25 2.69
22 23 2.760650 CCCAAAGGGTAGGAGCATTTTC 59.239 50.000 0.00 0.00 38.25 2.29
23 24 2.820178 CCCAAAGGGTAGGAGCATTTT 58.180 47.619 0.00 0.00 38.25 1.82
24 25 2.532250 CCCAAAGGGTAGGAGCATTT 57.468 50.000 0.00 0.00 38.25 2.32
36 37 0.114168 TTCCCACATCCACCCAAAGG 59.886 55.000 0.00 0.00 40.04 3.11
37 38 1.549203 CTTCCCACATCCACCCAAAG 58.451 55.000 0.00 0.00 0.00 2.77
38 39 0.114168 CCTTCCCACATCCACCCAAA 59.886 55.000 0.00 0.00 0.00 3.28
39 40 1.071314 ACCTTCCCACATCCACCCAA 61.071 55.000 0.00 0.00 0.00 4.12
40 41 1.465188 ACCTTCCCACATCCACCCA 60.465 57.895 0.00 0.00 0.00 4.51
41 42 1.000896 CACCTTCCCACATCCACCC 60.001 63.158 0.00 0.00 0.00 4.61
42 43 1.000896 CCACCTTCCCACATCCACC 60.001 63.158 0.00 0.00 0.00 4.61
43 44 1.678970 GCCACCTTCCCACATCCAC 60.679 63.158 0.00 0.00 0.00 4.02
44 45 2.763215 GCCACCTTCCCACATCCA 59.237 61.111 0.00 0.00 0.00 3.41
45 46 2.043953 GGCCACCTTCCCACATCC 60.044 66.667 0.00 0.00 0.00 3.51
46 47 0.541764 TTTGGCCACCTTCCCACATC 60.542 55.000 3.88 0.00 0.00 3.06
47 48 0.831711 GTTTGGCCACCTTCCCACAT 60.832 55.000 3.88 0.00 0.00 3.21
48 49 1.456705 GTTTGGCCACCTTCCCACA 60.457 57.895 3.88 0.00 0.00 4.17
49 50 1.456705 TGTTTGGCCACCTTCCCAC 60.457 57.895 3.88 0.00 0.00 4.61
50 51 1.456705 GTGTTTGGCCACCTTCCCA 60.457 57.895 3.88 0.00 0.00 4.37
51 52 1.456705 TGTGTTTGGCCACCTTCCC 60.457 57.895 3.88 0.00 34.35 3.97
52 53 1.040339 TGTGTGTTTGGCCACCTTCC 61.040 55.000 3.88 0.00 34.35 3.46
53 54 1.039856 ATGTGTGTTTGGCCACCTTC 58.960 50.000 3.88 0.00 34.35 3.46
54 55 1.494960 AATGTGTGTTTGGCCACCTT 58.505 45.000 3.88 0.00 34.35 3.50
55 56 2.373335 TAATGTGTGTTTGGCCACCT 57.627 45.000 3.88 0.00 34.35 4.00
56 57 3.006323 TGATTAATGTGTGTTTGGCCACC 59.994 43.478 3.88 0.00 34.35 4.61
57 58 4.250116 TGATTAATGTGTGTTTGGCCAC 57.750 40.909 3.88 0.00 35.86 5.01
58 59 4.100035 TGTTGATTAATGTGTGTTTGGCCA 59.900 37.500 0.00 0.00 0.00 5.36
59 60 4.626042 TGTTGATTAATGTGTGTTTGGCC 58.374 39.130 0.00 0.00 0.00 5.36
60 61 5.695816 ACATGTTGATTAATGTGTGTTTGGC 59.304 36.000 0.00 0.00 35.71 4.52
61 62 7.712264 AACATGTTGATTAATGTGTGTTTGG 57.288 32.000 11.07 0.00 37.11 3.28
62 63 8.274939 GGAAACATGTTGATTAATGTGTGTTTG 58.725 33.333 12.82 0.18 38.29 2.93
63 64 7.440856 GGGAAACATGTTGATTAATGTGTGTTT 59.559 33.333 12.82 3.60 40.14 2.83
64 65 6.928492 GGGAAACATGTTGATTAATGTGTGTT 59.072 34.615 12.82 0.00 37.11 3.32
65 66 6.041409 TGGGAAACATGTTGATTAATGTGTGT 59.959 34.615 12.82 0.00 37.11 3.72
66 67 6.453943 TGGGAAACATGTTGATTAATGTGTG 58.546 36.000 12.82 0.00 37.11 3.82
67 68 6.662865 TGGGAAACATGTTGATTAATGTGT 57.337 33.333 12.82 0.00 37.11 3.72
68 69 7.377398 TCTTGGGAAACATGTTGATTAATGTG 58.623 34.615 12.82 0.00 37.11 3.21
69 70 7.537596 TCTTGGGAAACATGTTGATTAATGT 57.462 32.000 12.82 0.00 38.66 2.71
70 71 8.252417 TCATCTTGGGAAACATGTTGATTAATG 58.748 33.333 12.82 10.27 31.70 1.90
71 72 8.365060 TCATCTTGGGAAACATGTTGATTAAT 57.635 30.769 12.82 0.00 31.70 1.40
72 73 7.773489 TCATCTTGGGAAACATGTTGATTAA 57.227 32.000 12.82 5.28 31.70 1.40
73 74 7.773489 TTCATCTTGGGAAACATGTTGATTA 57.227 32.000 12.82 0.00 34.72 1.75
74 75 6.669125 TTCATCTTGGGAAACATGTTGATT 57.331 33.333 12.82 0.00 34.72 2.57
75 76 6.669125 TTTCATCTTGGGAAACATGTTGAT 57.331 33.333 12.82 6.44 34.72 2.57
76 77 6.477053 TTTTCATCTTGGGAAACATGTTGA 57.523 33.333 12.82 4.10 34.23 3.18
100 101 4.758688 CAAGCTGGGTCAGTTTTCTTTTT 58.241 39.130 0.00 0.00 32.86 1.94
101 102 3.430790 GCAAGCTGGGTCAGTTTTCTTTT 60.431 43.478 0.00 0.00 32.86 2.27
102 103 2.101415 GCAAGCTGGGTCAGTTTTCTTT 59.899 45.455 0.00 0.00 32.86 2.52
103 104 1.683385 GCAAGCTGGGTCAGTTTTCTT 59.317 47.619 0.00 0.00 32.86 2.52
104 105 1.322442 GCAAGCTGGGTCAGTTTTCT 58.678 50.000 0.00 0.00 32.86 2.52
105 106 0.315251 GGCAAGCTGGGTCAGTTTTC 59.685 55.000 0.00 0.00 32.86 2.29
106 107 0.396974 TGGCAAGCTGGGTCAGTTTT 60.397 50.000 0.00 0.00 32.86 2.43
107 108 0.825010 CTGGCAAGCTGGGTCAGTTT 60.825 55.000 11.13 0.00 35.40 2.66
108 109 1.228367 CTGGCAAGCTGGGTCAGTT 60.228 57.895 11.13 0.00 33.40 3.16
109 110 2.433446 CTGGCAAGCTGGGTCAGT 59.567 61.111 11.13 0.00 33.40 3.41
112 113 0.391793 GAGTACTGGCAAGCTGGGTC 60.392 60.000 0.00 0.00 0.00 4.46
124 125 0.603569 ACTCTGCCAACCGAGTACTG 59.396 55.000 0.00 0.00 38.63 2.74
135 136 2.361119 GACGATGTGGTATACTCTGCCA 59.639 50.000 2.25 0.00 37.28 4.92
137 138 3.633235 CTGACGATGTGGTATACTCTGC 58.367 50.000 2.25 0.00 0.00 4.26
191 193 0.319900 AGATCATGTATGGCCGTCGC 60.320 55.000 0.00 0.00 0.00 5.19
203 205 7.493499 AGGAGATGGTAGGATAAAGATCATG 57.507 40.000 0.00 0.00 33.27 3.07
204 206 7.181845 GGAAGGAGATGGTAGGATAAAGATCAT 59.818 40.741 0.00 0.00 33.27 2.45
212 214 5.148502 GTTGAGGAAGGAGATGGTAGGATA 58.851 45.833 0.00 0.00 0.00 2.59
218 220 0.250513 GCGTTGAGGAAGGAGATGGT 59.749 55.000 0.00 0.00 0.00 3.55
219 221 0.250234 TGCGTTGAGGAAGGAGATGG 59.750 55.000 0.00 0.00 0.00 3.51
248 250 2.820197 GTCCGAGAATCTTGCCCTTTTT 59.180 45.455 0.00 0.00 0.00 1.94
254 256 0.108804 TGACGTCCGAGAATCTTGCC 60.109 55.000 14.12 0.00 0.00 4.52
334 340 5.060506 TGTGTCGAACAATGACTTGGTAAT 58.939 37.500 0.00 0.00 35.24 1.89
394 401 8.342634 CGGCATAGTTAATTGCTTGTTAAGTAT 58.657 33.333 7.61 8.98 37.80 2.12
399 406 6.594547 TGTACGGCATAGTTAATTGCTTGTTA 59.405 34.615 7.61 0.00 38.88 2.41
433 440 0.324943 GTAGCTGGGTTTGCTCTCCA 59.675 55.000 0.00 0.00 41.46 3.86
454 465 2.143925 GGCATATCAACCGAGGCTTAC 58.856 52.381 0.00 0.00 0.00 2.34
470 490 2.840038 TCACTCCATGTAACTGAGGCAT 59.160 45.455 0.00 0.00 0.00 4.40
475 495 7.239763 TGAATTACTCACTCCATGTAACTGA 57.760 36.000 0.00 0.00 0.00 3.41
489 510 5.048083 GTGGTTGGAGCATTTGAATTACTCA 60.048 40.000 0.00 0.00 0.00 3.41
537 578 0.739813 AGACGGTTTGCTATCACGGC 60.740 55.000 0.00 0.00 0.00 5.68
540 581 0.727398 GGCAGACGGTTTGCTATCAC 59.273 55.000 21.04 2.79 41.27 3.06
556 597 1.596752 ACTCGTTCACGCATTGGCA 60.597 52.632 0.00 0.00 41.24 4.92
558 599 0.439985 CTCACTCGTTCACGCATTGG 59.560 55.000 0.00 0.00 39.60 3.16
577 618 1.195674 GTTCGTTTCTCTGAAGCCTGC 59.804 52.381 0.00 0.00 0.00 4.85
587 628 4.738740 TCTTCTTTCTCACGTTCGTTTCTC 59.261 41.667 0.00 0.00 0.00 2.87
588 629 4.679662 TCTTCTTTCTCACGTTCGTTTCT 58.320 39.130 0.00 0.00 0.00 2.52
593 634 6.448053 TTGTTATCTTCTTTCTCACGTTCG 57.552 37.500 0.00 0.00 0.00 3.95
616 657 5.046520 AGAGGCTAGTCCACGTTCTATTTTT 60.047 40.000 6.07 0.00 37.29 1.94
618 659 4.024670 AGAGGCTAGTCCACGTTCTATTT 58.975 43.478 6.07 0.00 37.29 1.40
622 663 1.178276 CAGAGGCTAGTCCACGTTCT 58.822 55.000 6.07 0.00 37.29 3.01
623 664 0.458716 GCAGAGGCTAGTCCACGTTC 60.459 60.000 6.07 0.00 37.29 3.95
624 665 1.592223 GCAGAGGCTAGTCCACGTT 59.408 57.895 6.07 0.00 37.29 3.99
625 666 3.289525 GCAGAGGCTAGTCCACGT 58.710 61.111 6.07 0.00 37.29 4.49
670 715 2.797719 GCTAGCTCGAATACTTTGAGGC 59.202 50.000 7.70 0.00 40.79 4.70
727 775 1.068588 GAGCGGATATGCACTACACCA 59.931 52.381 0.00 0.00 37.31 4.17
744 796 1.452108 GGGGCACTGTACATGGAGC 60.452 63.158 0.00 0.00 0.00 4.70
813 867 0.250858 TGTCCCACTCATGCACTTGG 60.251 55.000 0.00 0.00 0.00 3.61
907 961 4.116328 CGGCTGAGGAACGAGCGA 62.116 66.667 0.00 0.00 35.95 4.93
973 1031 2.203596 CCTCGCCCCCTATACGGT 60.204 66.667 0.00 0.00 0.00 4.83
979 1037 2.042230 GGAGAACCTCGCCCCCTA 60.042 66.667 0.00 0.00 29.37 3.53
1152 1227 7.295340 AGATAAACCAGGTACACCTTTTCTTT 58.705 34.615 0.00 0.00 46.09 2.52
1390 1475 2.841881 ACACTTATTTTAGGAGCGGGGA 59.158 45.455 0.00 0.00 0.00 4.81
1391 1476 3.118371 AGACACTTATTTTAGGAGCGGGG 60.118 47.826 0.00 0.00 0.00 5.73
1392 1477 4.138487 AGACACTTATTTTAGGAGCGGG 57.862 45.455 0.00 0.00 0.00 6.13
1393 1478 6.817140 AGTTAAGACACTTATTTTAGGAGCGG 59.183 38.462 0.00 0.00 0.00 5.52
1394 1479 7.829378 AGTTAAGACACTTATTTTAGGAGCG 57.171 36.000 0.00 0.00 0.00 5.03
1395 1480 9.827411 CAAAGTTAAGACACTTATTTTAGGAGC 57.173 33.333 0.00 0.00 35.87 4.70
1408 1493 7.652507 ACTGAAGCTAGTACAAAGTTAAGACAC 59.347 37.037 0.00 0.00 0.00 3.67
1434 1519 8.609176 GTGTCTTGAGTTCAGTACAAATTTGTA 58.391 33.333 23.91 23.91 42.35 2.41
1435 1520 7.336931 AGTGTCTTGAGTTCAGTACAAATTTGT 59.663 33.333 25.99 25.99 44.86 2.83
1436 1521 7.697691 AGTGTCTTGAGTTCAGTACAAATTTG 58.302 34.615 16.67 16.67 0.00 2.32
1437 1522 7.865706 AGTGTCTTGAGTTCAGTACAAATTT 57.134 32.000 0.00 0.00 0.00 1.82
1438 1523 7.865706 AAGTGTCTTGAGTTCAGTACAAATT 57.134 32.000 0.00 0.00 0.00 1.82
1439 1524 9.561069 AATAAGTGTCTTGAGTTCAGTACAAAT 57.439 29.630 0.00 0.00 0.00 2.32
1440 1525 8.958119 AATAAGTGTCTTGAGTTCAGTACAAA 57.042 30.769 0.00 0.00 0.00 2.83
1441 1526 8.958119 AAATAAGTGTCTTGAGTTCAGTACAA 57.042 30.769 0.00 0.00 0.00 2.41
1442 1527 8.826710 CAAAATAAGTGTCTTGAGTTCAGTACA 58.173 33.333 0.00 0.00 0.00 2.90
1443 1528 8.283291 CCAAAATAAGTGTCTTGAGTTCAGTAC 58.717 37.037 0.00 0.00 0.00 2.73
1444 1529 7.444183 CCCAAAATAAGTGTCTTGAGTTCAGTA 59.556 37.037 0.00 0.00 0.00 2.74
1445 1530 6.263168 CCCAAAATAAGTGTCTTGAGTTCAGT 59.737 38.462 0.00 0.00 0.00 3.41
1446 1531 6.486657 TCCCAAAATAAGTGTCTTGAGTTCAG 59.513 38.462 0.00 0.00 0.00 3.02
1447 1532 6.361433 TCCCAAAATAAGTGTCTTGAGTTCA 58.639 36.000 0.00 0.00 0.00 3.18
1448 1533 6.877611 TCCCAAAATAAGTGTCTTGAGTTC 57.122 37.500 0.00 0.00 0.00 3.01
1449 1534 6.209391 CCATCCCAAAATAAGTGTCTTGAGTT 59.791 38.462 0.00 0.00 0.00 3.01
1450 1535 5.711976 CCATCCCAAAATAAGTGTCTTGAGT 59.288 40.000 0.00 0.00 0.00 3.41
1451 1536 5.945784 TCCATCCCAAAATAAGTGTCTTGAG 59.054 40.000 0.00 0.00 0.00 3.02
1452 1537 5.886609 TCCATCCCAAAATAAGTGTCTTGA 58.113 37.500 0.00 0.00 0.00 3.02
1453 1538 5.126061 CCTCCATCCCAAAATAAGTGTCTTG 59.874 44.000 0.00 0.00 0.00 3.02
1454 1539 5.264395 CCTCCATCCCAAAATAAGTGTCTT 58.736 41.667 0.00 0.00 0.00 3.01
1455 1540 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
1456 1541 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
1457 1542 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
1458 1543 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
1459 1544 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
1460 1545 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
1461 1546 4.791334 TGTACTCCCTCCATCCCAAAATAA 59.209 41.667 0.00 0.00 0.00 1.40
1462 1547 4.376223 TGTACTCCCTCCATCCCAAAATA 58.624 43.478 0.00 0.00 0.00 1.40
1463 1548 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
1464 1549 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
1465 1550 2.307686 GTTGTACTCCCTCCATCCCAAA 59.692 50.000 0.00 0.00 0.00 3.28
1466 1551 1.913419 GTTGTACTCCCTCCATCCCAA 59.087 52.381 0.00 0.00 0.00 4.12
1467 1552 1.203376 TGTTGTACTCCCTCCATCCCA 60.203 52.381 0.00 0.00 0.00 4.37
1468 1553 1.209747 GTGTTGTACTCCCTCCATCCC 59.790 57.143 0.00 0.00 0.00 3.85
1469 1554 1.209747 GGTGTTGTACTCCCTCCATCC 59.790 57.143 0.00 0.00 0.00 3.51
1470 1555 1.906574 TGGTGTTGTACTCCCTCCATC 59.093 52.381 0.00 0.00 31.02 3.51
1471 1556 2.038863 TGGTGTTGTACTCCCTCCAT 57.961 50.000 0.00 0.00 31.02 3.41
1472 1557 1.809133 TTGGTGTTGTACTCCCTCCA 58.191 50.000 0.00 0.00 31.02 3.86
1473 1558 2.677037 CGATTGGTGTTGTACTCCCTCC 60.677 54.545 0.00 0.00 31.02 4.30
1474 1559 2.028385 ACGATTGGTGTTGTACTCCCTC 60.028 50.000 0.00 0.00 31.02 4.30
1475 1560 1.975680 ACGATTGGTGTTGTACTCCCT 59.024 47.619 0.00 0.00 31.02 4.20
1476 1561 2.344025 GACGATTGGTGTTGTACTCCC 58.656 52.381 0.00 0.00 31.02 4.30
1477 1562 2.344025 GGACGATTGGTGTTGTACTCC 58.656 52.381 0.00 0.00 32.62 3.85
1478 1563 2.289195 TGGGACGATTGGTGTTGTACTC 60.289 50.000 0.00 0.00 0.00 2.59
1479 1564 1.695242 TGGGACGATTGGTGTTGTACT 59.305 47.619 0.00 0.00 0.00 2.73
1480 1565 2.172851 TGGGACGATTGGTGTTGTAC 57.827 50.000 0.00 0.00 0.00 2.90
1481 1566 2.932855 TTGGGACGATTGGTGTTGTA 57.067 45.000 0.00 0.00 0.00 2.41
1482 1567 2.060050 TTTGGGACGATTGGTGTTGT 57.940 45.000 0.00 0.00 0.00 3.32
1483 1568 2.556189 TCATTTGGGACGATTGGTGTTG 59.444 45.455 0.00 0.00 0.00 3.33
1484 1569 2.819608 CTCATTTGGGACGATTGGTGTT 59.180 45.455 0.00 0.00 0.00 3.32
1485 1570 2.224769 ACTCATTTGGGACGATTGGTGT 60.225 45.455 0.00 0.00 0.00 4.16
1486 1571 2.162208 CACTCATTTGGGACGATTGGTG 59.838 50.000 0.00 0.00 0.00 4.17
1487 1572 2.436417 CACTCATTTGGGACGATTGGT 58.564 47.619 0.00 0.00 0.00 3.67
1530 1616 6.043243 ACATCTGTCTTTTCTTGGTCTCCTTA 59.957 38.462 0.00 0.00 0.00 2.69
1607 1693 9.014297 TCATTAGTCATGCTCTAATAGATTCGA 57.986 33.333 16.69 9.96 36.65 3.71
1654 1740 5.480205 GCTATGAGGTATTAGGTTGGCTAC 58.520 45.833 0.00 0.00 0.00 3.58
1886 1975 3.733337 AGAGATGCCGTTTCATGGATAC 58.267 45.455 0.00 0.00 0.00 2.24
1894 1983 5.050972 CGTATAAGGAAAGAGATGCCGTTTC 60.051 44.000 0.00 0.00 0.00 2.78
1898 1987 4.238761 TCGTATAAGGAAAGAGATGCCG 57.761 45.455 0.00 0.00 0.00 5.69
1900 1989 7.653713 TCTCATTTCGTATAAGGAAAGAGATGC 59.346 37.037 9.67 0.00 35.75 3.91
1931 2024 7.818930 GGAAAATCATAAAAAGTGAGATGGCAA 59.181 33.333 0.00 0.00 0.00 4.52
2025 2118 8.084073 GGCATACAACACTGATGCATATAAATT 58.916 33.333 0.00 0.00 46.29 1.82
2284 2638 6.539826 CAGACAAATAACCTGCAGTCATATGA 59.460 38.462 13.81 0.00 0.00 2.15
2432 2786 0.179103 AATAGTTTCGGGGCCGTACG 60.179 55.000 8.69 8.69 40.74 3.67
2740 3097 1.389555 GCCATAGTTACTGTTGGGCC 58.610 55.000 14.95 0.00 33.93 5.80
2754 3111 0.398696 ACAGTGTTCGTTGGGCCATA 59.601 50.000 7.26 0.00 0.00 2.74
2762 3119 8.086522 ACATAAATAGTGTCTACAGTGTTCGTT 58.913 33.333 0.00 0.00 30.83 3.85
2768 3125 8.926715 TGCTTACATAAATAGTGTCTACAGTG 57.073 34.615 0.61 0.00 0.00 3.66
2791 3148 0.316841 TTGCCCGAAACCAATTCTGC 59.683 50.000 0.00 0.00 35.79 4.26
2794 3151 3.398406 ACAAATTGCCCGAAACCAATTC 58.602 40.909 0.00 0.00 39.88 2.17
2821 3178 8.583810 ACTAATGCATAAACGTACGATTACAT 57.416 30.769 24.41 16.95 0.00 2.29
2845 3203 3.916761 TGGTGTATTCCGACAGTGTAAC 58.083 45.455 0.00 0.00 0.00 2.50
2879 3237 8.085296 GTCAAAGGATCTCGTTCTGTATCATAT 58.915 37.037 0.00 0.00 0.00 1.78
2888 3246 4.956700 TCCTATGTCAAAGGATCTCGTTCT 59.043 41.667 0.00 0.00 38.24 3.01
2912 3270 4.391830 GCACATTGACGTCCTTCTAATTCA 59.608 41.667 14.12 0.00 0.00 2.57
2939 3297 0.812811 CGGATGTGGCATGGACAGAG 60.813 60.000 0.00 0.00 0.00 3.35
2952 3310 1.557099 TGCCTAGAGTTGTCGGATGT 58.443 50.000 0.00 0.00 0.00 3.06
2956 3314 1.751351 TCTGATGCCTAGAGTTGTCGG 59.249 52.381 0.00 0.00 0.00 4.79
3000 3373 2.787567 GGACGGCCTCCAGCTAGTC 61.788 68.421 0.00 5.63 43.49 2.59
3018 3391 2.930040 ACGACTTTCATGCACCTTATCG 59.070 45.455 0.00 0.00 0.00 2.92
3020 3393 3.935203 CAGACGACTTTCATGCACCTTAT 59.065 43.478 0.00 0.00 0.00 1.73
3034 3407 6.183360 GGGTTTGATTAGTAGATCAGACGACT 60.183 42.308 0.00 0.00 40.28 4.18
3056 3429 0.250124 TCAACAAATCTCGCGTGGGT 60.250 50.000 5.77 0.00 0.00 4.51
3062 3435 5.748592 ACAAACTAACTCAACAAATCTCGC 58.251 37.500 0.00 0.00 0.00 5.03
3093 3466 9.148879 TGGAAGGAGGAATAAATTGTAAAACAA 57.851 29.630 0.00 0.00 42.95 2.83
3095 3468 8.033038 GGTGGAAGGAGGAATAAATTGTAAAAC 58.967 37.037 0.00 0.00 0.00 2.43
3096 3469 7.730784 TGGTGGAAGGAGGAATAAATTGTAAAA 59.269 33.333 0.00 0.00 0.00 1.52
3103 3476 4.790790 AGTCTGGTGGAAGGAGGAATAAAT 59.209 41.667 0.00 0.00 0.00 1.40
3118 3491 6.393990 GCTGTATATTCAGGATAGTCTGGTG 58.606 44.000 10.91 0.00 36.12 4.17
3143 3516 1.176527 CACAAAGGGTGCCTGTATGG 58.823 55.000 0.00 0.00 41.36 2.74
3169 3542 5.464965 AATGTTATAAACAGCCTCGTTCG 57.535 39.130 0.00 0.00 45.95 3.95
3197 3605 7.230849 TCTCTTGCCAAATGATGTAACATTT 57.769 32.000 0.00 0.00 46.85 2.32
3202 3610 4.018506 TCCCTCTCTTGCCAAATGATGTAA 60.019 41.667 0.00 0.00 0.00 2.41
3213 3621 0.106521 GAGCTCATCCCTCTCTTGCC 59.893 60.000 9.40 0.00 0.00 4.52
3235 3643 6.043854 ACAGTTTCCTTGATAAGTCTCCTC 57.956 41.667 0.00 0.00 0.00 3.71
3291 3699 5.537188 GTGCAAATTCCCTTTTACACATGA 58.463 37.500 0.00 0.00 34.02 3.07
3303 3750 2.926420 AACCGGCGTGCAAATTCCC 61.926 57.895 6.01 0.00 0.00 3.97
3304 3751 1.732683 CAACCGGCGTGCAAATTCC 60.733 57.895 6.01 0.00 0.00 3.01
3346 3794 1.867233 GCCGATCATTACATCTTGCGT 59.133 47.619 0.00 0.00 0.00 5.24
3348 3796 2.481952 GAGGCCGATCATTACATCTTGC 59.518 50.000 0.00 0.00 0.00 4.01
3350 3798 2.039084 GGGAGGCCGATCATTACATCTT 59.961 50.000 0.00 0.00 0.00 2.40
3351 3799 1.625818 GGGAGGCCGATCATTACATCT 59.374 52.381 0.00 0.00 0.00 2.90
3353 3801 1.625818 GAGGGAGGCCGATCATTACAT 59.374 52.381 0.00 0.00 0.00 2.29
3356 3804 0.469331 ACGAGGGAGGCCGATCATTA 60.469 55.000 0.00 0.00 0.00 1.90
3358 3806 1.338136 AAACGAGGGAGGCCGATCAT 61.338 55.000 0.00 0.00 0.00 2.45
3377 3825 7.116075 ACAATCTGCAGGTTACCAATACAATA 58.884 34.615 12.92 0.00 0.00 1.90
3387 3835 2.162408 GCTTGGACAATCTGCAGGTTAC 59.838 50.000 12.92 9.54 0.00 2.50
3408 3856 4.935205 TGGTTTCAACAAGATCATACCGAG 59.065 41.667 0.00 0.00 0.00 4.63
3411 3859 7.378181 ACAATTGGTTTCAACAAGATCATACC 58.622 34.615 10.83 0.00 35.48 2.73
3412 3860 8.816640 AACAATTGGTTTCAACAAGATCATAC 57.183 30.769 10.83 0.00 35.82 2.39
3437 3885 4.381612 CGGTATAGACTTCCTCTTGCACAA 60.382 45.833 0.00 0.00 0.00 3.33
3448 3896 2.873133 AGCTGTGCGGTATAGACTTC 57.127 50.000 0.00 0.00 0.00 3.01
3454 3902 5.777850 TGAAGTTATAGCTGTGCGGTATA 57.222 39.130 0.00 0.00 37.48 1.47
3471 3919 6.705825 GCCCTGATGTTTATTTTTGTTGAAGT 59.294 34.615 0.00 0.00 0.00 3.01
3497 3945 8.523915 TGCAAGTAATTGGAGAATTGATATGT 57.476 30.769 4.91 0.00 33.63 2.29
3527 3975 4.207165 AGCACTTCATTGTACCAGTGTTT 58.793 39.130 0.00 0.00 39.14 2.83
3530 3978 6.106003 TGTATAGCACTTCATTGTACCAGTG 58.894 40.000 0.00 0.00 39.79 3.66
3531 3979 6.294361 TGTATAGCACTTCATTGTACCAGT 57.706 37.500 0.00 0.00 0.00 4.00
3532 3980 7.464358 GTTTGTATAGCACTTCATTGTACCAG 58.536 38.462 0.00 0.00 0.00 4.00
3533 3981 6.091577 CGTTTGTATAGCACTTCATTGTACCA 59.908 38.462 0.00 0.00 0.00 3.25
3534 3982 6.091713 ACGTTTGTATAGCACTTCATTGTACC 59.908 38.462 0.00 0.00 0.00 3.34
3535 3983 7.057149 ACGTTTGTATAGCACTTCATTGTAC 57.943 36.000 0.00 0.00 0.00 2.90
3536 3984 7.661127 AACGTTTGTATAGCACTTCATTGTA 57.339 32.000 0.00 0.00 0.00 2.41
3537 3985 6.554334 AACGTTTGTATAGCACTTCATTGT 57.446 33.333 0.00 0.00 0.00 2.71
3538 3986 7.851822 AAAACGTTTGTATAGCACTTCATTG 57.148 32.000 15.46 0.00 0.00 2.82
3539 3987 9.953697 TTAAAAACGTTTGTATAGCACTTCATT 57.046 25.926 15.46 2.32 0.00 2.57
3540 3988 9.389570 GTTAAAAACGTTTGTATAGCACTTCAT 57.610 29.630 15.46 0.00 0.00 2.57
3541 3989 7.856894 GGTTAAAAACGTTTGTATAGCACTTCA 59.143 33.333 15.46 0.00 0.00 3.02
3542 3990 7.324375 GGGTTAAAAACGTTTGTATAGCACTTC 59.676 37.037 15.46 2.55 0.00 3.01
3543 3991 7.140705 GGGTTAAAAACGTTTGTATAGCACTT 58.859 34.615 15.46 4.23 0.00 3.16
3544 3992 6.294120 GGGGTTAAAAACGTTTGTATAGCACT 60.294 38.462 15.46 0.00 0.00 4.40
3545 3993 5.858049 GGGGTTAAAAACGTTTGTATAGCAC 59.142 40.000 15.46 11.01 0.00 4.40
3546 3994 5.769162 AGGGGTTAAAAACGTTTGTATAGCA 59.231 36.000 15.46 0.00 0.00 3.49
3547 3995 6.258230 AGGGGTTAAAAACGTTTGTATAGC 57.742 37.500 15.46 12.64 0.00 2.97
3548 3996 7.809331 GGAAAGGGGTTAAAAACGTTTGTATAG 59.191 37.037 15.46 0.00 0.00 1.31
3549 3997 7.521261 CGGAAAGGGGTTAAAAACGTTTGTATA 60.521 37.037 15.46 5.87 0.00 1.47
3550 3998 6.514947 GGAAAGGGGTTAAAAACGTTTGTAT 58.485 36.000 15.46 6.87 0.00 2.29
3551 3999 5.449725 CGGAAAGGGGTTAAAAACGTTTGTA 60.450 40.000 15.46 10.91 0.00 2.41
3552 4000 4.677514 CGGAAAGGGGTTAAAAACGTTTGT 60.678 41.667 15.46 12.12 0.00 2.83
3553 4001 3.797796 CGGAAAGGGGTTAAAAACGTTTG 59.202 43.478 15.46 0.00 0.00 2.93
3554 4002 3.737663 GCGGAAAGGGGTTAAAAACGTTT 60.738 43.478 7.96 7.96 0.00 3.60
3555 4003 2.223782 GCGGAAAGGGGTTAAAAACGTT 60.224 45.455 0.00 0.00 0.00 3.99
3556 4004 1.337703 GCGGAAAGGGGTTAAAAACGT 59.662 47.619 0.00 0.00 0.00 3.99
3557 4005 1.663730 CGCGGAAAGGGGTTAAAAACG 60.664 52.381 0.00 0.00 0.00 3.60
3558 4006 1.608109 TCGCGGAAAGGGGTTAAAAAC 59.392 47.619 6.13 0.00 0.00 2.43
3559 4007 1.608109 GTCGCGGAAAGGGGTTAAAAA 59.392 47.619 6.13 0.00 0.00 1.94
3560 4008 1.237533 GTCGCGGAAAGGGGTTAAAA 58.762 50.000 6.13 0.00 0.00 1.52
3561 4009 0.950071 CGTCGCGGAAAGGGGTTAAA 60.950 55.000 6.13 0.00 0.00 1.52
3562 4010 1.374505 CGTCGCGGAAAGGGGTTAA 60.375 57.895 6.13 0.00 0.00 2.01
3563 4011 2.262292 CGTCGCGGAAAGGGGTTA 59.738 61.111 6.13 0.00 0.00 2.85
3575 4023 2.426261 GGTTCAAAACGCCGTCGC 60.426 61.111 0.00 0.00 39.84 5.19
3576 4024 2.127906 CGGTTCAAAACGCCGTCG 60.128 61.111 0.00 0.00 40.53 5.12
3580 4028 2.426261 GCGACGGTTCAAAACGCC 60.426 61.111 0.00 0.00 42.79 5.68
3581 4029 2.426261 GGCGACGGTTCAAAACGC 60.426 61.111 0.00 0.00 46.79 4.84
3582 4030 0.656205 CTTGGCGACGGTTCAAAACG 60.656 55.000 0.00 0.00 0.00 3.60
3583 4031 0.379316 ACTTGGCGACGGTTCAAAAC 59.621 50.000 0.00 0.00 0.00 2.43
3584 4032 0.378962 CACTTGGCGACGGTTCAAAA 59.621 50.000 0.00 0.00 0.00 2.44
3585 4033 0.462225 TCACTTGGCGACGGTTCAAA 60.462 50.000 0.00 0.00 0.00 2.69
3586 4034 0.878523 CTCACTTGGCGACGGTTCAA 60.879 55.000 0.00 0.00 0.00 2.69
3587 4035 1.300620 CTCACTTGGCGACGGTTCA 60.301 57.895 0.00 0.00 0.00 3.18
3588 4036 1.300697 ACTCACTTGGCGACGGTTC 60.301 57.895 0.00 0.00 0.00 3.62
3589 4037 1.594293 CACTCACTTGGCGACGGTT 60.594 57.895 0.00 0.00 0.00 4.44
3590 4038 2.029073 CACTCACTTGGCGACGGT 59.971 61.111 0.00 0.00 0.00 4.83
3591 4039 2.029073 ACACTCACTTGGCGACGG 59.971 61.111 0.00 0.00 0.00 4.79
3592 4040 1.591594 ACACACTCACTTGGCGACG 60.592 57.895 0.00 0.00 0.00 5.12
3593 4041 1.934463 CACACACTCACTTGGCGAC 59.066 57.895 0.00 0.00 0.00 5.19
3594 4042 1.887242 GCACACACTCACTTGGCGA 60.887 57.895 0.00 0.00 0.00 5.54
3595 4043 2.633657 GCACACACTCACTTGGCG 59.366 61.111 0.00 0.00 0.00 5.69
3596 4044 1.230635 ATCGCACACACTCACTTGGC 61.231 55.000 0.00 0.00 0.00 4.52
3597 4045 1.995484 CTATCGCACACACTCACTTGG 59.005 52.381 0.00 0.00 0.00 3.61
3598 4046 1.995484 CCTATCGCACACACTCACTTG 59.005 52.381 0.00 0.00 0.00 3.16
3599 4047 1.066858 CCCTATCGCACACACTCACTT 60.067 52.381 0.00 0.00 0.00 3.16
3600 4048 0.532573 CCCTATCGCACACACTCACT 59.467 55.000 0.00 0.00 0.00 3.41
3601 4049 0.460284 CCCCTATCGCACACACTCAC 60.460 60.000 0.00 0.00 0.00 3.51
3602 4050 0.902984 ACCCCTATCGCACACACTCA 60.903 55.000 0.00 0.00 0.00 3.41
3603 4051 0.179108 GACCCCTATCGCACACACTC 60.179 60.000 0.00 0.00 0.00 3.51
3604 4052 1.614241 GGACCCCTATCGCACACACT 61.614 60.000 0.00 0.00 0.00 3.55
3605 4053 1.153429 GGACCCCTATCGCACACAC 60.153 63.158 0.00 0.00 0.00 3.82
3606 4054 0.907704 AAGGACCCCTATCGCACACA 60.908 55.000 0.00 0.00 31.13 3.72
3607 4055 0.179081 GAAGGACCCCTATCGCACAC 60.179 60.000 0.00 0.00 31.13 3.82
3608 4056 1.335132 GGAAGGACCCCTATCGCACA 61.335 60.000 0.00 0.00 31.13 4.57
3609 4057 1.446366 GGAAGGACCCCTATCGCAC 59.554 63.158 0.00 0.00 31.13 5.34
3610 4058 3.965660 GGAAGGACCCCTATCGCA 58.034 61.111 0.00 0.00 31.13 5.10
3619 4067 1.221021 GGATCGTGTGGGAAGGACC 59.779 63.158 0.00 0.00 38.08 4.46
3620 4068 0.323629 TTGGATCGTGTGGGAAGGAC 59.676 55.000 0.00 0.00 0.00 3.85
3621 4069 1.060729 TTTGGATCGTGTGGGAAGGA 58.939 50.000 0.00 0.00 0.00 3.36
3622 4070 1.904287 TTTTGGATCGTGTGGGAAGG 58.096 50.000 0.00 0.00 0.00 3.46
3623 4071 2.030274 GGTTTTTGGATCGTGTGGGAAG 60.030 50.000 0.00 0.00 0.00 3.46
3624 4072 1.957877 GGTTTTTGGATCGTGTGGGAA 59.042 47.619 0.00 0.00 0.00 3.97
3625 4073 1.611519 GGTTTTTGGATCGTGTGGGA 58.388 50.000 0.00 0.00 0.00 4.37
3626 4074 0.239879 CGGTTTTTGGATCGTGTGGG 59.760 55.000 0.00 0.00 0.00 4.61
3627 4075 0.948678 ACGGTTTTTGGATCGTGTGG 59.051 50.000 0.00 0.00 34.40 4.17
3628 4076 1.397945 CGACGGTTTTTGGATCGTGTG 60.398 52.381 0.00 0.00 35.91 3.82
3629 4077 0.863144 CGACGGTTTTTGGATCGTGT 59.137 50.000 0.00 0.00 35.91 4.49
3630 4078 0.165079 CCGACGGTTTTTGGATCGTG 59.835 55.000 5.48 0.00 35.91 4.35
3631 4079 0.952010 CCCGACGGTTTTTGGATCGT 60.952 55.000 13.94 0.00 38.62 3.73
3632 4080 1.641123 CCCCGACGGTTTTTGGATCG 61.641 60.000 13.94 0.00 0.00 3.69
3633 4081 0.321830 TCCCCGACGGTTTTTGGATC 60.322 55.000 13.94 0.00 0.00 3.36
3634 4082 0.330267 ATCCCCGACGGTTTTTGGAT 59.670 50.000 13.94 13.92 0.00 3.41
3635 4083 0.982704 TATCCCCGACGGTTTTTGGA 59.017 50.000 13.94 12.12 0.00 3.53
3636 4084 1.375551 CTATCCCCGACGGTTTTTGG 58.624 55.000 13.94 6.46 0.00 3.28
3637 4085 1.065998 TCCTATCCCCGACGGTTTTTG 60.066 52.381 13.94 0.00 0.00 2.44
3638 4086 1.278537 TCCTATCCCCGACGGTTTTT 58.721 50.000 13.94 0.00 0.00 1.94
3639 4087 1.208776 CTTCCTATCCCCGACGGTTTT 59.791 52.381 13.94 0.00 0.00 2.43
3640 4088 0.828677 CTTCCTATCCCCGACGGTTT 59.171 55.000 13.94 0.00 0.00 3.27
3641 4089 1.683418 GCTTCCTATCCCCGACGGTT 61.683 60.000 13.94 0.00 0.00 4.44
3642 4090 2.132352 GCTTCCTATCCCCGACGGT 61.132 63.158 13.94 0.00 0.00 4.83
3643 4091 2.735237 GCTTCCTATCCCCGACGG 59.265 66.667 6.99 6.99 0.00 4.79
3644 4092 1.472662 ATGGCTTCCTATCCCCGACG 61.473 60.000 0.00 0.00 0.00 5.12
3645 4093 0.035458 CATGGCTTCCTATCCCCGAC 59.965 60.000 0.00 0.00 0.00 4.79
3646 4094 1.127567 CCATGGCTTCCTATCCCCGA 61.128 60.000 0.00 0.00 0.00 5.14
3647 4095 1.376466 CCATGGCTTCCTATCCCCG 59.624 63.158 0.00 0.00 0.00 5.73
3648 4096 0.111253 CACCATGGCTTCCTATCCCC 59.889 60.000 13.04 0.00 0.00 4.81
3649 4097 0.538287 GCACCATGGCTTCCTATCCC 60.538 60.000 13.04 0.00 0.00 3.85
3650 4098 0.183492 TGCACCATGGCTTCCTATCC 59.817 55.000 13.04 0.00 34.04 2.59
3651 4099 1.141657 TCTGCACCATGGCTTCCTATC 59.858 52.381 13.04 0.00 34.04 2.08
3652 4100 1.142465 CTCTGCACCATGGCTTCCTAT 59.858 52.381 13.04 0.00 34.04 2.57
3653 4101 0.543277 CTCTGCACCATGGCTTCCTA 59.457 55.000 13.04 0.00 34.04 2.94
3654 4102 1.302285 CTCTGCACCATGGCTTCCT 59.698 57.895 13.04 0.00 34.04 3.36
3655 4103 1.751927 CCTCTGCACCATGGCTTCC 60.752 63.158 13.04 0.00 34.04 3.46
3656 4104 2.413142 GCCTCTGCACCATGGCTTC 61.413 63.158 13.04 1.15 41.92 3.86
3657 4105 2.362120 GCCTCTGCACCATGGCTT 60.362 61.111 13.04 0.00 41.92 4.35
3658 4106 4.437587 GGCCTCTGCACCATGGCT 62.438 66.667 13.04 0.00 44.36 4.75
3659 4107 3.951769 AAGGCCTCTGCACCATGGC 62.952 63.158 13.04 0.00 44.22 4.40
3660 4108 2.050350 CAAGGCCTCTGCACCATGG 61.050 63.158 11.19 11.19 40.13 3.66
3661 4109 2.707849 GCAAGGCCTCTGCACCATG 61.708 63.158 25.63 12.44 40.13 3.66
3662 4110 2.362120 GCAAGGCCTCTGCACCAT 60.362 61.111 25.63 0.00 40.13 3.55
3663 4111 4.666253 GGCAAGGCCTCTGCACCA 62.666 66.667 29.07 0.00 46.69 4.17
3673 4121 5.095490 GCATACGATTATATTTGGCAAGGC 58.905 41.667 0.00 0.00 0.00 4.35
3674 4122 5.121611 TCGCATACGATTATATTTGGCAAGG 59.878 40.000 0.00 0.00 45.12 3.61
3675 4123 6.164408 TCGCATACGATTATATTTGGCAAG 57.836 37.500 0.00 0.00 45.12 4.01
3690 4138 1.011904 GTGTGCTGCATCGCATACG 60.012 57.895 5.27 0.00 41.09 3.06
3691 4139 4.983090 GTGTGCTGCATCGCATAC 57.017 55.556 5.27 9.39 43.08 2.39
3692 4140 0.391528 AGTGTGTGCTGCATCGCATA 60.392 50.000 5.27 1.38 42.62 3.14
3693 4141 0.391528 TAGTGTGTGCTGCATCGCAT 60.392 50.000 5.27 5.97 42.62 4.73
3694 4142 0.602372 TTAGTGTGTGCTGCATCGCA 60.602 50.000 5.27 9.80 37.62 5.10
3695 4143 0.516877 TTTAGTGTGTGCTGCATCGC 59.483 50.000 5.27 9.26 0.00 4.58
3696 4144 3.125829 AGAATTTAGTGTGTGCTGCATCG 59.874 43.478 5.27 0.00 0.00 3.84
3697 4145 4.691860 AGAATTTAGTGTGTGCTGCATC 57.308 40.909 5.27 3.14 0.00 3.91
3698 4146 5.009911 TGAAAGAATTTAGTGTGTGCTGCAT 59.990 36.000 5.27 0.00 39.27 3.96
3699 4147 4.337836 TGAAAGAATTTAGTGTGTGCTGCA 59.662 37.500 0.00 0.00 39.27 4.41
3700 4148 4.858935 TGAAAGAATTTAGTGTGTGCTGC 58.141 39.130 0.00 0.00 39.27 5.25
3701 4149 6.738200 CGTATGAAAGAATTTAGTGTGTGCTG 59.262 38.462 0.00 0.00 39.27 4.41
3702 4150 6.426937 ACGTATGAAAGAATTTAGTGTGTGCT 59.573 34.615 0.00 0.00 39.27 4.40
3703 4151 6.519761 CACGTATGAAAGAATTTAGTGTGTGC 59.480 38.462 0.00 0.00 39.27 4.57
3704 4152 7.530525 CACACGTATGAAAGAATTTAGTGTGTG 59.469 37.037 14.40 0.00 41.23 3.82
3705 4153 7.307751 CCACACGTATGAAAGAATTTAGTGTGT 60.308 37.037 19.08 0.00 42.63 3.72
3706 4154 7.015289 CCACACGTATGAAAGAATTTAGTGTG 58.985 38.462 15.34 15.34 43.12 3.82
3707 4155 6.148811 CCCACACGTATGAAAGAATTTAGTGT 59.851 38.462 0.00 0.00 39.27 3.55
3708 4156 6.370442 TCCCACACGTATGAAAGAATTTAGTG 59.630 38.462 0.00 0.00 39.27 2.74
3709 4157 6.469410 TCCCACACGTATGAAAGAATTTAGT 58.531 36.000 0.00 0.00 39.27 2.24
3710 4158 6.978343 TCCCACACGTATGAAAGAATTTAG 57.022 37.500 0.00 0.00 39.27 1.85
3711 4159 6.256975 CGATCCCACACGTATGAAAGAATTTA 59.743 38.462 0.00 0.00 39.27 1.40
3712 4160 5.064707 CGATCCCACACGTATGAAAGAATTT 59.935 40.000 0.00 0.00 43.98 1.82
3713 4161 4.570772 CGATCCCACACGTATGAAAGAATT 59.429 41.667 0.00 0.00 0.00 2.17
3714 4162 4.119862 CGATCCCACACGTATGAAAGAAT 58.880 43.478 0.00 0.00 0.00 2.40
3715 4163 3.517602 CGATCCCACACGTATGAAAGAA 58.482 45.455 0.00 0.00 0.00 2.52
3716 4164 2.159156 CCGATCCCACACGTATGAAAGA 60.159 50.000 0.00 0.00 0.00 2.52
3717 4165 2.201732 CCGATCCCACACGTATGAAAG 58.798 52.381 0.00 0.00 0.00 2.62
3718 4166 1.551430 ACCGATCCCACACGTATGAAA 59.449 47.619 0.00 0.00 0.00 2.69
3719 4167 1.134936 CACCGATCCCACACGTATGAA 60.135 52.381 0.00 0.00 0.00 2.57
3720 4168 0.458260 CACCGATCCCACACGTATGA 59.542 55.000 0.00 0.00 0.00 2.15
3721 4169 0.458260 TCACCGATCCCACACGTATG 59.542 55.000 0.00 0.00 0.00 2.39
3722 4170 1.410004 ATCACCGATCCCACACGTAT 58.590 50.000 0.00 0.00 0.00 3.06
3723 4171 1.187974 AATCACCGATCCCACACGTA 58.812 50.000 0.00 0.00 0.00 3.57
3724 4172 1.187974 TAATCACCGATCCCACACGT 58.812 50.000 0.00 0.00 0.00 4.49
3725 4173 2.526304 ATAATCACCGATCCCACACG 57.474 50.000 0.00 0.00 0.00 4.49
3726 4174 3.243636 ACGTATAATCACCGATCCCACAC 60.244 47.826 0.00 0.00 0.00 3.82
3727 4175 2.960384 ACGTATAATCACCGATCCCACA 59.040 45.455 0.00 0.00 0.00 4.17
3728 4176 3.655276 ACGTATAATCACCGATCCCAC 57.345 47.619 0.00 0.00 0.00 4.61
3729 4177 4.342951 AGAAACGTATAATCACCGATCCCA 59.657 41.667 0.00 0.00 0.00 4.37
3730 4178 4.879598 AGAAACGTATAATCACCGATCCC 58.120 43.478 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.