>input_sequence_44096
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-----------------ATGGCGACGGCGTTCAAGGCGTTCTTGAACAGCCCCGTCGGCCCCAAGACCACGCACTTCTGG
GGACCCGTCAGCAACTGGGGCTTCATCCTCGCGGTACGCGCTCCACGATTC-----------------TCTCTGTCTCTC
TGTACCTGGTTTATCTCTTTTTTTTTA-AAGAAAAGGTGTACCTGGTTTATCTATCTAGCTTTCCCAAATTAACCTGTGC
TGTTGGTTGATCGCAACCACTAGAGTGCTGCGAATTCCTAGTGATGGTTTGGCACCGGTTACAGTTT-----ATGATCAT
CTAT----ATACGGGGAATTTCTCTCTTACTCTCCATTTCTAATTAATTGTAGTTCTAGCTTTACCTCAAACTTCTATAT
GTTTGACTGAATCTAAGAATACATTAACATATACTCCCCGCTCCTAAAATAAGTGTCTTAACTTTGTACTAGCTTCAGTA
CAAATTTGTACTGAACTCAAGACACTTATTTTGGGATGGAGGGAGTACAACACCAATCGTCCCAAATGAGTGG-CAGAGA
GGTTGTGGAAACGGGTAAGGAGACCAAGAAAAGACAGATGTTTTAGTTTTTTATTTGCATGATAATGTTCTCTTCGGTGA
GCCTATCATTCCTCGAATCTATTAGAGCATGACTAATGAATAAAGTTATCGTGTCATCTGTAGCCAACCTAATA--CCTC
ATAGCGACTCACAACAATTTCACGATTTAAGGCCTCCTTTGATTTACAAAAACTTTGTAGGAATTCTAAAGGATATAAAT
TTTGTAAAAAAAAATTGTTCGGAGCCCTTTGATTTGTAGGAATGGATTCCTATTCTTATATAGGATAGGAAGCAATCCTT
CACACTTTAAAGAAAAAAAACATTAATTG-AGGCTCAATGGAAAAATTCATATCGTATCCATGAAACGGCATC----TCT
TTCCTTATACGAAATGAGATACATTGCCATCTCACTTTTTATGATTTTCCTATTCCTAGGAACCAAAGGAGGCCTAATTA
TATTCTTAAATATTATTTGAACCCATGAATTCCAGTCAATTTATATGCATCAGTGTTGTATGCCTATTACTAACAAGAAT
AATTCATTAATTTGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TAATTACTATCGTTACAAAAATATTGTTGGATTTTGAAGCCTAA
TCTATTTATAGGAAGTTAGTGAAATAGTTGAAATGAATAAACTTTTCAAGTTGGCATCTCATTAAATTCTTTAACATTGT
AACTCAATAATCCTTCGGTTGCTATTTCATCTCCAGGGTATGGCTGACATGAACAAGCCACCTGAATTGATATCCGGTCA
TATGACTGCAGGTTATTTGTCTGACAAGTCATAGATTCTAGATATAGTTTGGTGATCAATACATCTTCAATTATCTTTAA
TGACTACTATTGTGTTGTGCAGTCATGTGTGTGTATTCTGGCCTATTTATGAGGTTCGCATGGGTCGTACGGCCCCGAAA
CTATTTTCTTATGGCAACCCATGCCTCCAACGAAAGCGTTCAGCTCTACCAGTTATCTCGCTATGCTAGGGCTCAAGGGT
AAGGCTTCTTATGTGAACTTTTA-TTGCCATATTACTACTACTATATTACCACAATATCCACAAAAAAATCACCAGATTA
AACATGGTTATCA--TTTTCTTGTTTGTTGCGTACTTGTCAAATGCTAACATGTCATTTAATTAATGCAACAATAGAGTG
ATAATATAGATGTTTGGGCTTGGATTTTGCAGTTACCTAGAGAAGAAAGAGCCTGAGGCCCAACAGTAA-----------
--------------------------------------------------------------------------------
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----------------------------------------
>chr1B_1_TraesCS1B01G089800
AGAAACAATGAATTATAAAAATGAAAATGCTCCTACCCTTTGGGTGGATGTGGGAAGGTGGCCAAACACACATTAATCAA
CATGTTTCCCAAGATGAAAAAAAAAGAAAACTGACCCAGCTTGCCAGTACTCGGTTGGCAGAGTATACCAC-ATCGTCAG
CCGCCGTCGACGTCCTGGTCCTGGTCACCGCCGCGACGGCCATACATGATCTTTATCCTACCATCTCCTTCCTCAACGCA
GACTAACAAAAAAAGG-GCAAGATTCTCGGACGTCACGATGCCGGCCCCC-ACAAGTGGCTGCTATGGTTATTCCAACGA
ATCCATTGTTTA--TGTCAATTA-CCAAGTCATTGTTCGACACATCCGTCGTCGGGTAGGTCTCCCTTTCAGTTAAAAAA
ATACTTAACAAGCAATTAACTATGCCGTACAGGTCACTGTG----GAGAGCAAACCCAGCTACGGTAAGCCTCGGTT---
------GATATGCCTCA-GTTACATGGAGTGAGTAATTCAAATGCTCCAA--------------------CCACCCGGCG
GCTATACGAACATACGTGCCGTGATAGCAAACCGTCTGCCAATGCGTGAACGAGTGAGCAGGCTTCAGAGAAACGAACGT
GAGAAAGAAGATAACAAAAAATAGAACGTGGACTA----GCCTCTGCTCTTGTGGTAGGAACAAGAGCGTGCTCGCCTCA
AAGTATTCGAGCTAGCCGCCCATGCTACCAACGCG---GAGCCTAATCAGCTTATGGTGTAGTGCATA----TCCGCTCC
ATGTACAGTG--CCCCCGCATGGGCATGGCCGCATCATTTCCGGATCATGTGATGGACCGGCGCGCCCAAGTGCATGAGT
GGGACAGTGTGCCCACTCTCCGTTAAATCATCTTCTTATTTCGCCGCCCCCACCCACCCCCCACAAGCTCGGAGGCTCGC
TCGCTCGTTCCTCAGCCGTTGGCCGTCTCCACGAG----TCCATCCGCACCCGCGGACGGCAGGCAAACAACCGTATAGG
GGGCGAGGTTCTCCGCCATGGCGACGGCGTTCAAGGCGTTCTTGAACAGCCCCGTCGGCCCCAAGACCACGCACTTCTGG
GGACCCGTCAGCAACTGGGGCTTCATCCTCGCGGTACGCGCTCCACGATTC-----------------TCTCTGTCTCTC
TGTACCTGGTTTATCTCTTTTTTTTTA-AAGAAAAGGTGTACCTGGTTTATCTATCTAGCTTTCCCAAATTAACCTGTGC
TGTTGGTTGATCGCAACCACTAGAGTGCTGCGAATTCCTAGTGATGGTTTGGCACCGGTTACAGTTT-----ATGATCAT
CTAT----ATACGGGGAATTTCTCTCTTACTCTCCATTTCTAATTAATTGTAGTTCTAGCTTTACCTCAAACTTCTATAT
GTTTGACTGAATCTAAGAATACATTAACATATACTCCCCGCTCCTAAAATAAGTGTCTTAACTTTGTACTAGCTTCAGTA
CAAATTTGTACTGAACTCAAGACACTTATTTTGGGATGGAGGGAGTACAACACCAATCGTCCCAAATGAGTGG-CAGAGA
GGTTGTGGAAACGGGTAAGGAGACCAAGAAAAGACAGATGTTTTAGTTTTTTATTTGCATGATAATGTTCTCTTCGGTGA
GCCTATCATTCCTCGAATCTATTAGAGCATGACTAATGAATAAAGTTATCGTGTCATCTGTAGCCAACCTAATA--CCTC
ATAGCGACTCACAACAATTTCACGATTTAAGGCCTCCTTTGATTTACAAAAACTTTGTAGGAATTCTAAAGGATATAAAT
TTTGTAAAAAAAAATTGTTCGGAGCCCTTTGATTTGTAGGAATGGATTCCTATTCTTATATAGGATAGGAAGCAATCCTT
CACACTTTAAAGAAAAAAAACATTAATTG-AGGCTCAATGGAAAAATTCATATCGTATCCATGAAACGGCATC----TCT
TTCCTTATACGAAATGAGATACATTGCCATCTCACTTTTTATGATTTTCCTATTCCTAGGAACCAAAGGAGGCCTAATTA
TATTCTTAAATATTATTTGAACCCATGAATTCCAGTCAATTTATATGCATCAGTGTTGTATGCCTATTACTAACAAGAAT
AATTCATTAATTTGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TAATTACTATCGTTACAAAAATATTGTTGGATTTTGAAGCCTAA
TCTATTTATAGGAAGTTAGTGAAATAGTTGAAATGAATAAACTTTTCAAGTTGGCATCTCATTAAATTCTTTAACATTGT
AACTCAATAATCCTTCGGTTGCTATTTCATCTCCAGGGTATGGCTGACATGAACAAGCCACCTGAATTGATATCCGGTCA
TATGACTGCAGGTTATTTGTCTGACAAGTCATAGATTCTAGATATAGTTTGGTGATCAATACATCTTCAATTATCTTTAA
TGACTACTATTGTGTTGTGCAGTCATGTGTGTGTATTCTGGCCTATTTATGAGGTTCGCATGGGTCGTACGGCCCCGAAA
CTATTTTCTTATGGCAACCCATGCCTCCAACGAAAGCGTTCAGCTCTACCAGTTATCTCGCTATGCTAGGGCTCAAGGGT
AAGGCTTCTTATGTGAACTTTTA-TTGCCATATTACTACTACTATATTACCACAATATCCACAAAAAAATCACCAGATTA
AACATGGTTATCA--TTTTCTTGTTTGTTGCGTACTTGTCAAATGCTAACATGTCATTTAATTAATGCAACAATAGAGTG
ATAATATAGATGTTTGGGCTTGGATTTTGCAGTTACCTAGAGAAGAAAGAGCCTGAGGCCCAACAGTAACTATGGCCCAA
CGAACACTGTAGACACTATTTATGTAAGCAGAATTGGTTTCGGGCAATTTGTAATGCATGTAATCGTA-CGTTTATGCAT
TAGTTACACTGTCGGAATACACCAAAATGGAAACCCATATGATACAGAACGAGATCCTTTGACATAGGATGAATTAGAAG
GACGTCAATGTGCATCCTCTGTCCATGCCACATCCGACAACTCTAGGCATCAGATTATAGATACTTTGCATCTA------
---------TCAGACTAGCTGGAGGCCGTCCGATAAGGTGCATGAAAGTCGTCTGATCTACTAATCAAACCCACGCGAGA
TTTGTTGAGTTAGTTTGTTAGTTGATTGTTTTACAATTTATTCCTCCTTCCACCAGACTATCCTGAATATACAGCCCATA
CAGGCACCCTTTGTGTTTTTTCGAACGAGGCTGT-----------------------------------TTATAACATTA
TGACAAATGTTACATCATTTGGCAAGAGAGGGATGAGCTCCCGAGGAGACTTATCAAGGAAACTGTTACAAGAAGGGCCT
TTAGCCAACTTAGCTAATTCATGT---------------------------------------GTAAAAGGGAATTTGCA
CGCCGGTTGATAGCAATCACCAAAAAA-TGCAGACGCAAGATGTAATGATCGGCCTCCCTCGTTTATTGTATTGGTAACC
TGCAGATTGTCCAAGCTCGGTATGATCTTGTTGAAACCAATTGTTTGTGCAAGAGGAAGTCTATACCGCACAGCTATAAC
TTCAACAAAAATAAACATCAGGGCACATATCAATTCTCCAATTACTTGCATTAAAAACACTGGTACAATGAAGTGCTATA
CAAACGTTTTTAACCCCTTTCCGCGACGGCGTTTTGAACCGTCGCCAAGTGAGTGTGTGCGATAGGGGTCCTTCCCACAC
GATCCAAAAACCGTCGGGGATAGGAAGCCATGGTGCAGAGGCCTTGCCAAATATAATCGTATGCGATGCAGCACACACTA
AATTCTTTCATACGTGTGGGATCGGTGATTATACGTTTCT
>chr1D_111
--------------------------------------------------------------------------------
------------------------------CTCACCCAGCTTGCTAGTACTCGGTCGACAGAGTATAGCAATATCGTCCG
CCGCCGTCGACGTCCTGGTC------ACCGCCACGACGGCCATAGGTGATCTT-ATCCTGTCATCTCCTTCCTGAGCGCA
GACTTAGAATAAAAAAAGCAAGATTCTCGGGCTTCACGCTGCCGGCCCCC-ACAAGTGGCTGCTAAGGCTATTCTAAGGA
ATCCATTGTTTA--TGTGAGTTACCCAAGTCATTGTTCGACACATCAGTCTGGGGTCGGTCT--CCTTTCAGTTAAAAA-
-TTACCAACAAGCAATTAACTACACCGTACAGGTCACTGCT----GAGGCCAAACCCAGCTAAGTTAAGCCTCGGTTAGG
CATATGGATCTGCCCCA-GTTACATGGTGCGAGTAATTCAAATGCTTCCAACCATTGCCGGTTACGTGCTCCACCCGGCG
GCGATACGAACGTACGTACCATGATAGCAAACCGTCCGGCAATGCGTGAACGAGTGATCAGGCTTCACGGAAATGAACGT
GAGAAAGAAGCTAAAATAGAATGTGGACCGAGTGATCAGGCCTCAGCTCTTGTGGTAGGAACGAGAGCGTGCTCACCTCA
AAGTATTCAAGCTAGCCGCCCATGCTACCAACGCGGTGGAGCCTAATCAGCTTACGGTGTAGTGCATACATATCCACACC
ATGCACAGTGAGCCCCCGCATGGCCGCATCG--ATCATTTCCAGATCATGTGATGGACCTGCGCGCGCAAGTGCATGAGT
GGGACAGTGTGCCCACTCTCCGTTAAATCATCTTCTTATTTTGCTGCCCCCACCCACCCCCCACAAGCTCGGAGGCTTGC
CCGCTCGTTCCTCACCTGTTGGCCGTCTCCACGAG----TCCATCCGCACCCGCGGACGGCAGGCAAACAGCCGTAGAGG
GGGCGAGGTTCTCCGCCATGGCCACGGCGTTCAAGGCGTTCTTGAACAGCCCCGTCGGCCCCAGGACCACGCACTTCTGG
GGACCCGTCAGCAACTGGGGCTTCATCCTCGCGGTACGCGCTCCACGATTC-----------------TCTCTCTCTCTA
---------------------------------------------------------AGCTTTCCCAAATTAGCCTGTGC
CGTTGGTTGATCGCAAACACGAGAGTGCTGCAATTTCCTAGTGATGTTTTTGACAACAGTCGCAGTCCTATGATGATCAT
CTAT----ATACGGGGAATTTCTCTCTTAGTCTCAGTTGCAAATTAACTGTAGTTCTAGCTTTACCTCAAACTTCTTTAT
GTTTGATTGAATCTAAAAATAGATTAACATATACAA-----CGCCAAATAAATTATCTT---------------------
----------------------------------------------------CCAATCGTCCCAAATGAGTGACCAGAGA
GGTTGTGGAAACGGGGAAGGAGACCAAGAATAGACAGATGTTTTAGTTTTTTATTTGCATGATAATGTTCTCTTCGGTGA
GACTACCATGCCCCGAATCTATTAGAGCATGAATAATAAATAAAGTTATCGTGTCATCTATAGCCAACCTAATATACCTC
TCAGCGACCCACTGCAATTTCACGATTTAAGGACTCCTTTGATTTACAAGAACTTTGTAGGAATCCTAAAGGATATAAAT
TTTATAGAAAATATTCGTTCAGAGCTCTTTCATTTGTAGGAATGGATTCCTGTTCTTATATAGGATAGGAAGTAATCCTT
CATAGTTTAAAGGAAAAGAAATATTAGCCTAGACTCAATAGAAAAATTCATATCTTATCCATCAAATGACATCGATATCT
TTCCTTGTAGAAATTAAGATACA-TGTCATCTCACTTTCTATGATTTTCCTATTCCTATGAACCAAAGAAGGCCTAATTA
TGTACTCAAATATTATTAAAACCCATGAATTCCAGTCGATTCATATGCATCGGTGTTGTCAT-----------------T
AATTCATTAATTTCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TACTTACTACTGTTAGGAAAATATTGTCGGATTTTGAAGCATAA
TCTCTTTCTAGGAAGTTCATGAAACTGTGCAAATGAATAATCTTTTCAAGTTCGCCTCTCATTAAGTT-----ACATTGT
AACTCAATAATCCCTCGGTTGTTATTTCATCTCCAGGGTATGGCTGACATGAACAAGCCACCTGAATTGATATCCGGCCA
TATGACTGCAGGTTATTTGTCTGACAAGTCACAGATTCTAGATATAGTTTGATGATCAATACCTCTTCAACTATCTTTAA
TGACTACTATTGTGTTGTGCAGTCATGTGTGTGTATTCTGGCCTATTTATGAGGTTCGCATGGGTGGTACGGCCCCGGAA
CTATTTTCTTATGGCAACCCATGCCTCCAACGAAAGCGTTCAGCTCTACCAGTTATCTCGCTATGCTAGGGCTCAAGGGC
AAGTCTTCTTATGTGAACTTTTTCTTGCCATATTACTACTACTATATTACCACAATATCCACCAAAAGATCA------TA
AACATGGTTATCA--TTTTCTTGTTTGTTGCATACTTGCCAAATGCTAACATGGCACTTAATTAATGCAACAATAGAGTG
ATAATATAGATGCTTGGCCTTGGATTTTGCAGTTACCTGGAGAAGAAAGAGCCTGAAGCCCAACAGTAACAATGGCCCGA
AGAATACTGTAGACACTATTTATGTAAACAAAATTGGTTTCGGGTAATTTGTAATGCTTGTAATCATACCGTTTATGTAT
TAATTACACTGTCGCAATACAACAAAATGGAAAACCCTATGATACGGAATGAGATCCTTTGACATAGGAGGAATTAGAAG
GACGTCAATGTGCATCGTTTGTCCATGCCGCATTCTACAACTCTAGGCATCAGACTATATATACTTTGCATCTACTACTA
GCTGGAGTATCATACTAGCTGGAGGCCATCTGGTAAGGTGCATGAAGGTCGTCTGA-CTACTAATCAAGCCCACACGAGA
TTTGTTGAGGTGGTTTGTTA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------
>chr1A_249
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AAAAGAACAAAGATTATCGGACGTCACGATGCCGGCCCCCCACAAGTGGCTGCTATGGTTATTCCAACGA
ATCCATTGTTTATGTGTCAGTTA-CCAAGTCATTGTTCGACACATCCATCGTCGGACCGGTCTCCCTTTCAGTTAAAAA-
-TACTGTACAAGCAATTAACTATCACGTACAAGCAGACAGGTGATGAGAGCAAATCCAGCTACGCTGAGCCTCGGCTAGG
CATGCCGATCTGCCCTCGGTTACGTGGAGCGAGTAATTCAAATGCTCCAA--------------------CCACCCGGCG
GCGATACGATCGTA------------------------------------------------------------------
--------------------------------------------------TGTGGTAGGAACAAGAGCGCGCTCACCTCA
AAGTATTCGAGCTAGCCGCCCATGCCACGAACGCGGTGGAGCCTAATCAGCTCACGGTGCAGTGCATA----TCCACTCC
ATGTACAGTG--CCCCCGCATGGGCATGGCCGCATCATTTCCGGATCATGTGATGGACCTGCGCGCGCAAGTGCATGAGT
GGGACAGTGCGCCTG--CTCCGTTAAATCATCTTCTTATTTCGTTGCCCCCACCCACCCCCCACAAGCTCGGAA------
--GCCCGTTCCTCAGCCGTTGGCCGTCC---------ACTCCACCCGCGCCCGCGGACGGCAAGCAAGCAGCCGTAGAGG
GGGCGAGGTCATCGGCCATGCCCACGGCGCTCAAGGCGTTCTTGAACAGCCCCGTCGGCCCCAGGACCACGCACTTCTGG
GGACCCGTCAGCAACTGGGGCTTCATCCTCGCGGTACGCGCTCCACGATTCCCTCTCCTCTCTCTCTCTCTCTCTCTCTC
TGTACCTGGTTTATCTAC-------------------------------------CTAGCTTTCCCAAATTAACCTGTGC
TGTTGGTTGATCGCGACTACCAGAGTGCTGCGAATTCCTAGTGA--------CACCGGTTGCAGTTT-----ATGATCAT
CTATCTATATACGGGGAATTTCTCCCGTGCTCTCCATTTCAAATTAATTATAGTTCTAGCTTTACGTCAAAATTCTTTAA
GTTTGACA---------AACATATTAACATATACAA-----TCCGAAATTAATTATCTT---------------------
----------------------------------------------------CCAATCGCCCCAAATGAGTGACCAGAGA
GGTTGTGGAAACGGGGAAGGAGACCAAGAAAAGACAGATGTTTTAGTTTTTTATTTGCATGATAATGTTCTCTTCGGTGA
GTCTATCATGCGCCGAATCTATTAGAGCATGACTAATAAATAAAGTTATTGTGTCATCTATAGCCAACCTAATATATCTC
TTAGCGACCCACTGCAATTTCACGATTTAAGGCCTCCTTTGATTTACGGGAACTTCGTAGGAATACTAAAGGTTTTAAAT
TTTATAGAAAAAGTTCGTCCAAAGCTCTTTCATTTGTAGGAATGGATTCCTGTTCTTATATAGGATAGGAAGCAATCCTT
CATAGTTTAAAGAAAAAGAAATATTAGCCTAGACTCGATAGAAAAATTCATATCCTATCCATCAAATCACATCGTTCTCT
TTCCTTGTAGAAATTGAGATACA-TGTCATCTTACTTTCTATGATTTTCATATTTTTATGAACCAAAAGAGAACTAA-TA
TATACTTAAATATTATTAGAACCCATGAATTCCAGTCGATTCATATGCATCAGTGTTGTATGTCTGTTACTCATAAGAAT
AATTCATTAATTTGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TACTTACTATAGCTACAAAAATATTATCGGATTTTGAAGCATGA
TCTCTTTCTAGGAAGTTCATGAAACGGTGTAAATGAATAATCTTTTCAAGTTCGTCTGTCATTAAATTCTTTGACACTGT
AACTTAATAATCCCTCGGTTGTTATTTCATCTCTAGGGTATGGCTAACATGAACAAGCCACCTGAATTGATATCCGGCCA
TATGACTGCAGGTTATTTGTCTGACAAGTCACAGATTCTAGATATAGTTTGATGATCAATACATCTTCAACTATCTTTAG
TGACTACTATTGTGTTGTGCAGTCATGTGTGTGTATTCTGGCCTATTTATGAGGTTCGCATGGGTGGTACGGCCGCGGAA
CTATTTTCTTATGGCAACCCATGCCTCCAACGAAAGCGTTCAACTCTACCAGTTATCTCGCTATGCTAGGGCTCAAGGGT
AAGTCTTCTTATGTGAACTTTTTCTTGCCATATTACTA---------TACCACAGTATCCACCAAAAGATCA------TA
AACATGGTTATATCGTTTTCTTGTTTGTTGCATAATTGCCAAATGCTAACATGGCACTTAATTAATGCAACAATAGAGTG
ATAATATAGATGTTTGGCCTTGGATTTTGCAGTTACCTAGAGAAGAAAGAGCCTGAAGCCCAACATTAACAATGGCCCGA
AGAATACTGTAGACACTATTTATGTAAACAAAATTGGTTTCGGGCAATTTGTAATGCTTGTGATCGTAAAGTTTATGTAT
TAATTACACTGTCGGAATACAACAAAATGGAAACCCCTATGATACGGAATGAGATCCTTTGACATAGGAGGGATTAGAAG
GACGTCAATGTGCATCGTCTGTCCATGCCGCATTCGACAATTCCAGGCATG-GACTGTAGATACTTTGCATCTA------
---------TCATACTAGCTGGAGGCCGTCTGGTAAGGTGCACGAAGGTCGTCTGGTCTACTAATTAAGCCCACAAGAGA
TTTGTTGAGTTGGTTTGTTAATTAACTACTTTACATTTTATTCCTCCTTCGACCAGACTATCCTGAATATACAGCTCATA
CAGGCACCCTTTGCGGGTTTTTTAACGAGACTGTGTACGATTATAATTTTTGATAACATGTCTCTATATTTATAACCTTG
TGATCAATGCTACATCATTTAGCAAGAGAGGGATGAGCTCCCCAGGAGACTTATCAAGGAAACTGTTACAAGAAGGGCCT
TTAGCCAACTTAGCTAATCCATGTGCAACAATATTAGCTTCCCTAGGACAGTGCACAAATGAAGTAAAATAGAATTTGCA
CGCCA-TTGATAGCAATCACCAAAAAAATGCAGCCACGGGGTGCAGTGATCGGCCTCCCTCGTTCATTGTATTGATAACC
TGCAGATTGTCCAAGTTCACTATGATCTTGTTGAAACCAATTGTCTGTGCAAGAGAAAGTCCATACCGCAGAGCTATAGC
TTCAACAAAAATAAACATCAGGGCCCATATCAATTCTCCAATTACTTGCATTAATAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr1B_644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCTTGTGGTAGGAACAAGAGCGTGCTCACCTCA
AAGTATTCGAGCTAGCCGCCCATGCTACGCACTCGC-GGAGCCTAATCAGCTCACGGTGTAGTGCATA----TCCACACC
ATGTACAGTGAGCCGCCGCATGGCCGCATCG--ATCATTTCCAGATCATGTGATGGACCTGC------------------
------------CCACTCTCCGTTAAACCATCTTCTTATTTCGCTGCCCCCACCCACCCCCCATAAGCTCGGAGGCTCGC
CCGCTCGTTCGTCAGCTGTTGGCCGTCTCCACGAGGGACTCCATCCGCACCCGCGGACGGC-------------------
----GAGGTTCTCCGCCATGGCGACGGCGTTCAAGGCGTTCTTGAACAGCCCCGTCGGCCCCAAGACCACTCACTTCTGG
GGACCCGTCAGCAACTGGGGCTTCATCCTCGCGGTACGCGCTCCACGATTC-----------------TCTCTGTCTCTC
TGTACCTGGTTTATCTTCTTCTTTTTTTAAGAAAAGGTGTACCTGGTTTATCTATCTAGCTTTCCCAAATTAACCTGTGC
TGTTGGTTGATCGCAACCACTAGAGTGCTGCGAATTCCTAGTGATGGTTTGGCACCGGTTACAGTTT-----ATGATCAT
CTAT----ATACGGGGAATTTCTCTCTTACTCTCCATTTCTAATTAATTGTAGTTCTAGCTTTACCTCAAACTTCTATAT
GTTTGACTGAATCTAAGAATACATTAACATATACAA-----CGCCAAATAGATAATCTT---------------------
----------------------------------------------------CCAATCGTCCCAAATGAGTGG-CAGAGT
GGTTGTGGAAACGGGGAAGGAGACCAAGAAAAGACAGATGTTTTAGTTTTTTATTTGCATGATAATGTTCTCTTCGGTGA
GCCTATCATTCCCCGGATCTATTAGAGCATGACTAATGAATAAAGTTATCGCGTCATCTATAGCCAACCTAATA--CCTC
ATAGCGACTCACAACAATTTCACGATTTAAGGCCTCCTTTGATTTACAAAAACTTTGTAGGAATTCTAAAGGATATAAAT
TTTGTAAAAA-AAATTGTTCGGAGCCCTTTGATTTGTAGGAATGGATTCCTATTCTTATATAGGATAGGAAGCAATCCTT
CACATTTAAAA------AAACATTAATTG-AGGCTCAATGAAAAAATCCATATCCTATCCATCAAATGACATC----TCT
TTCCTTATACGAAATGAGATGCA-TGTCATCTCACTTTTTATGTTTTTCCTATTCCTAGGAACCAAAGGAGGCCTAATTA
TATTCTTAAATATTATTTGAACCCGTGAATTCCAGTTGATTTATATGCATCAGTGTTGTATGCCTATTACTCACAAGAAT
AATTCATTAATTTGTTACTCCCTCCTTCCCAAAATCTTAGGCGTTTAAGTTTTTTCATGCAATCCCATATCTAAGGCGCA
CATGCCTTCCTCTCTCAATCAATTACAGCTAACGATCCCTGTTTAATTGGAAAGAAGATCGTGGATGCCTCCCACCATTT
TTTTGAATCGTGGTCGCCTCCCTGTCTATTACCTGTACGATGGGCCAAATAACAATCCACGTACGCTAATTTTCGTGCTA
AAGACTAACACGCCTAACATTGTGGGAAGGAGGGAGTAATTACTATCGTTACAAAAATATTGTTGGATTTTGAATCCTAA
TCTATTTATAGGAAGTTAGTGAAATAGTTGAAATGAATAATCTTTTCAAGTTGGCATCTCATTAAATTCTTTAACATTGT
AACTCAATAATCCTTCGGTTCCTATTTCATCTCCAGGGTATGGCTGACATGAACAAGCCACCTGAATTGATATCCGGCCA
TATGACTGCAGGTTATTTGTCTGACAAGTCATAGATTCTAGCTATAGTTTGGTGATCAATACATCTTCAACTATCTTTAA
TGACTACTATTGTGTTGTGCAGTCATGTGTGTGTATTCTGGCCTATTTATGAGGTTCGCATGGGTGGTACGGCCCCGAAA
CTATTTTCTTATGGCAACTCATGCCTCCAACGAAAGCGTTCAGCTCTACCAGTTATCTCGCTATGCTAGGGCTCAAGGGT
AAGGCTTCTTATGTGAACTTTTA-TTGCCATATTACTACTACTATATTACCATAATATCCACAAAAGATTCACCAGATTA
AACATGGTTATCA--TTTTCTTGTTTGTCGCGTACTTGTCAAATGCTAACATGTCATTTAACTAATGCAACAATAGAGTG
ATAATATAGATGTTTGGGCTTGGATTTTGCAGTTACCTAGAGAAGAAAGAGCCTGAAGCCCAACAATAACAATGGCCCGA
CGAATACTGTAGACACTATTTATGTAAAGAAAATTGGTTTCGGGCAATTTGCAATGCTTGTAATCATACCGTTTATGTAT
TAATTACACTGCCGGAATACAACAAAATGGAAACCCCTATGATACGGAATGAGATCCTTTGACATAGGAGGAATTATAAG
GACGTCAATGTGTGTCGTCTGTCCATGCCGCATTCGACAACTCTAGGCATCA------------TTTGCATCTA------
---------TCATACTAGCTGGAGGTCGTCTGGTAAGGTGCACGAAGGTCGTCTGATCTACTAATCAAGCCCACACGAGA
TTTGTTGAGTTGGTTTGTTAATTAACTACTTTACAGTTTATTCCTCCTTCGACCAGACTATCCTGAGTATACAGCTCATA
CATGCACCCATTGTGTTTTTTTGAACGAGACTATGTACGATTATAATTTTTGGTAACATATCTCTATATTTATAACGTTG
TGACCAATGCTACATCATTTAGCAAGAGAGGGATGAGCTCCCCAGGAGACTTATCAAGGAAACTGTTACAAGAAGGGCCT
TTAGCCAACTTAGCTATTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------S----------S-S---------S--S-------S-
--------------------SSSSSS------S-----------SS-------S-----SS------------S-S----
----S-S--S-----S----------------------------------------------------------------
-------------------S-----------------------------------SSS---------------------S
S----S-----------------S---------------S------------------------S---------------
---------S----S--------------S--------------------------------------------------
--S--------S-----S--S---------------S-S------------------S---------SS----S------
----------S---S-S-S---SSSSSSS-SSSS----------S-----------------------------S-----
------------------------------------------------------S--------------------S----
-----------------------------------------------------------S------S-------------
--------------------------------------------S-----------------------------------
S---------------------------------------------------------------------S-----S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SS--S-----S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------SSSSSSS---S---S---S-S----SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
---------------S----------------------------------------------------------------
------------S----------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------------------------------------------S-------S---S-S-----------
-----------------------S--S-----------------------------------------------------
-------------------------------------S---------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------------------------------S---------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-------------S-------S-
----S----------------------S--S--------------------------S-------------------S--
--S------------------S--------------S--------S---S-------------------S----------
----------------S------------S---S--------------------S-------------------------
------------S-----------------S-S-------------S---------------------S-----S-----
-----------S--------S--S-S-SS------S--------------S------------------------S----
---------------------S-------S----------------------------------------------S--S
----S----S----------S---------------------S-------------------------------------
------------------S--------------------------------------------------SS---------
----SS---------------------------S-S-SS-S--S-S------------------S---------S-----
---------------S--SS------------------------S----------S-----S--------S-------S-
------------------------S-----------------------------S--SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_715
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TAGGAACAAGAGCGTGCTCG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CGTACGGCCCCGAAA
CTATT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_1616
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GAGA
GGTTGTGGAAACGGGT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_3621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GGCAAGAGAGGGATGAGCTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
