Multiple sequence alignment - TraesCS1B01G084300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G084300 chr1B 100.000 4099 0 0 1 4099 68740857 68744955 0.000000e+00 7570.0
1 TraesCS1B01G084300 chr1D 91.644 3698 237 29 354 4012 48862138 48865802 0.000000e+00 5051.0
2 TraesCS1B01G084300 chr1D 89.492 571 55 3 2888 3457 48873169 48873735 0.000000e+00 717.0
3 TraesCS1B01G084300 chr1D 95.588 68 3 0 35 102 48862064 48862131 4.330000e-20 110.0
4 TraesCS1B01G084300 chr1A 92.104 2191 127 15 1358 3542 48771963 48774113 0.000000e+00 3046.0
5 TraesCS1B01G084300 chr1A 94.922 1024 43 6 349 1363 48770514 48771537 0.000000e+00 1594.0
6 TraesCS1B01G084300 chr1A 87.125 567 46 12 3539 4099 48777017 48777562 5.820000e-173 617.0
7 TraesCS1B01G084300 chr1A 95.455 66 3 0 35 100 48770449 48770514 5.600000e-19 106.0
8 TraesCS1B01G084300 chr1A 88.136 59 7 0 2205 2263 48772704 48772762 2.040000e-08 71.3
9 TraesCS1B01G084300 chr1A 100.000 35 0 0 1 35 48770400 48770434 9.510000e-07 65.8
10 TraesCS1B01G084300 chr6B 94.167 240 13 1 111 349 374208256 374208017 8.370000e-97 364.0
11 TraesCS1B01G084300 chr5D 92.248 258 18 2 95 350 115709033 115709290 8.370000e-97 364.0
12 TraesCS1B01G084300 chr6D 92.188 256 16 3 96 350 351013706 351013958 3.900000e-95 359.0
13 TraesCS1B01G084300 chr6D 92.157 255 17 2 96 350 86956444 86956695 1.400000e-94 357.0
14 TraesCS1B01G084300 chr6D 91.440 257 21 1 95 350 239511678 239511934 6.520000e-93 351.0
15 TraesCS1B01G084300 chr6D 90.335 269 20 5 94 359 220102872 220103137 8.430000e-92 348.0
16 TraesCS1B01G084300 chr3D 91.860 258 19 2 95 350 336093259 336093516 3.900000e-95 359.0
17 TraesCS1B01G084300 chr7B 90.406 271 20 6 95 360 347413385 347413116 6.520000e-93 351.0
18 TraesCS1B01G084300 chr4D 91.188 261 19 4 92 350 303580818 303581076 6.520000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G084300 chr1B 68740857 68744955 4098 False 7570.00 7570 100.0000 1 4099 1 chr1B.!!$F1 4098
1 TraesCS1B01G084300 chr1D 48862064 48865802 3738 False 2580.50 5051 93.6160 35 4012 2 chr1D.!!$F2 3977
2 TraesCS1B01G084300 chr1D 48873169 48873735 566 False 717.00 717 89.4920 2888 3457 1 chr1D.!!$F1 569
3 TraesCS1B01G084300 chr1A 48770400 48774113 3713 False 976.62 3046 94.1234 1 3542 5 chr1A.!!$F2 3541
4 TraesCS1B01G084300 chr1A 48777017 48777562 545 False 617.00 617 87.1250 3539 4099 1 chr1A.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 175 0.111832 ATGGTATGCCTGCCATCCTG 59.888 55.0 5.78 0.0 43.65 3.86 F
343 359 0.169451 TGCAACGCATGAGCATCTTG 59.831 50.0 0.00 0.0 42.60 3.02 F
2164 2627 0.108424 GCAGTCTCACGGAGAGCAAT 60.108 55.0 4.13 0.0 44.35 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 2000 0.759959 TTGGCTTTGACCCTGTACGA 59.240 50.0 0.00 0.0 0.00 3.43 R
2181 2644 0.756294 TTTGAGGTTGCTCTCCGTGA 59.244 50.0 0.00 0.0 33.04 4.35 R
3973 4459 0.112218 ATGGCCAAACTAGGTGTGCA 59.888 50.0 10.96 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 84 1.480137 CGTGGAGATGCCTCTTCTCTT 59.520 52.381 0.00 0.00 39.65 2.85
93 109 1.135228 ACGGGAACAAAACAAGTGTGC 60.135 47.619 0.00 0.00 0.00 4.57
102 118 5.723295 ACAAAACAAGTGTGCATCTTTTCT 58.277 33.333 0.00 0.00 0.00 2.52
103 119 6.862209 ACAAAACAAGTGTGCATCTTTTCTA 58.138 32.000 0.00 0.00 0.00 2.10
105 121 6.699575 AAACAAGTGTGCATCTTTTCTACT 57.300 33.333 0.00 0.00 0.00 2.57
106 122 5.931441 ACAAGTGTGCATCTTTTCTACTC 57.069 39.130 0.00 0.00 0.00 2.59
107 123 5.615289 ACAAGTGTGCATCTTTTCTACTCT 58.385 37.500 0.00 0.00 0.00 3.24
108 124 6.759272 ACAAGTGTGCATCTTTTCTACTCTA 58.241 36.000 0.00 0.00 0.00 2.43
109 125 6.870965 ACAAGTGTGCATCTTTTCTACTCTAG 59.129 38.462 0.00 0.00 0.00 2.43
110 126 6.597832 AGTGTGCATCTTTTCTACTCTAGT 57.402 37.500 0.00 0.00 0.00 2.57
111 127 6.626302 AGTGTGCATCTTTTCTACTCTAGTC 58.374 40.000 0.00 0.00 0.00 2.59
112 128 6.435904 AGTGTGCATCTTTTCTACTCTAGTCT 59.564 38.462 0.00 0.00 0.00 3.24
113 129 7.612244 AGTGTGCATCTTTTCTACTCTAGTCTA 59.388 37.037 0.00 0.00 0.00 2.59
114 130 7.913297 GTGTGCATCTTTTCTACTCTAGTCTAG 59.087 40.741 0.00 0.00 0.00 2.43
115 131 7.612244 TGTGCATCTTTTCTACTCTAGTCTAGT 59.388 37.037 6.77 0.00 0.00 2.57
116 132 8.126700 GTGCATCTTTTCTACTCTAGTCTAGTC 58.873 40.741 6.77 0.00 0.00 2.59
117 133 8.050325 TGCATCTTTTCTACTCTAGTCTAGTCT 58.950 37.037 6.77 0.00 0.00 3.24
118 134 9.550406 GCATCTTTTCTACTCTAGTCTAGTCTA 57.450 37.037 6.77 0.00 0.00 2.59
130 146 9.440784 CTCTAGTCTAGTCTAATAAAAACAGCG 57.559 37.037 6.77 0.00 0.00 5.18
131 147 8.954350 TCTAGTCTAGTCTAATAAAAACAGCGT 58.046 33.333 6.77 0.00 0.00 5.07
132 148 9.570488 CTAGTCTAGTCTAATAAAAACAGCGTT 57.430 33.333 0.00 0.00 0.00 4.84
133 149 8.240883 AGTCTAGTCTAATAAAAACAGCGTTG 57.759 34.615 0.00 0.00 0.00 4.10
134 150 7.331193 AGTCTAGTCTAATAAAAACAGCGTTGG 59.669 37.037 3.74 0.00 0.00 3.77
135 151 7.117379 GTCTAGTCTAATAAAAACAGCGTTGGT 59.883 37.037 3.74 0.00 0.00 3.67
136 152 8.306038 TCTAGTCTAATAAAAACAGCGTTGGTA 58.694 33.333 3.74 0.00 0.00 3.25
137 153 7.733402 AGTCTAATAAAAACAGCGTTGGTAA 57.267 32.000 3.74 0.00 0.00 2.85
138 154 8.331730 AGTCTAATAAAAACAGCGTTGGTAAT 57.668 30.769 3.74 0.00 0.00 1.89
139 155 8.234546 AGTCTAATAAAAACAGCGTTGGTAATG 58.765 33.333 3.74 0.00 0.00 1.90
140 156 8.231837 GTCTAATAAAAACAGCGTTGGTAATGA 58.768 33.333 3.74 0.00 0.00 2.57
141 157 8.952278 TCTAATAAAAACAGCGTTGGTAATGAT 58.048 29.630 3.74 0.00 0.00 2.45
142 158 7.810766 AATAAAAACAGCGTTGGTAATGATG 57.189 32.000 3.74 0.00 39.59 3.07
143 159 3.848272 AAACAGCGTTGGTAATGATGG 57.152 42.857 3.74 0.00 38.09 3.51
144 160 2.489938 ACAGCGTTGGTAATGATGGT 57.510 45.000 3.74 0.00 38.09 3.55
145 161 3.620427 ACAGCGTTGGTAATGATGGTA 57.380 42.857 3.74 0.00 38.09 3.25
146 162 4.150897 ACAGCGTTGGTAATGATGGTAT 57.849 40.909 3.74 0.00 38.09 2.73
147 163 3.876914 ACAGCGTTGGTAATGATGGTATG 59.123 43.478 3.74 0.00 38.09 2.39
148 164 2.878406 AGCGTTGGTAATGATGGTATGC 59.122 45.455 0.00 0.00 0.00 3.14
149 165 2.031157 GCGTTGGTAATGATGGTATGCC 60.031 50.000 0.00 0.00 0.00 4.40
150 166 3.476552 CGTTGGTAATGATGGTATGCCT 58.523 45.455 0.16 0.00 35.27 4.75
151 167 3.250762 CGTTGGTAATGATGGTATGCCTG 59.749 47.826 0.16 0.00 35.27 4.85
152 168 2.862541 TGGTAATGATGGTATGCCTGC 58.137 47.619 0.16 0.00 35.27 4.85
153 169 2.162681 GGTAATGATGGTATGCCTGCC 58.837 52.381 0.16 0.00 35.27 4.85
154 170 2.488891 GGTAATGATGGTATGCCTGCCA 60.489 50.000 0.56 0.56 41.76 4.92
158 174 2.560506 ATGGTATGCCTGCCATCCT 58.439 52.632 5.78 0.00 43.65 3.24
159 175 0.111832 ATGGTATGCCTGCCATCCTG 59.888 55.000 5.78 0.00 43.65 3.86
160 176 1.900498 GGTATGCCTGCCATCCTGC 60.900 63.158 0.00 0.00 35.34 4.85
161 177 1.152902 GTATGCCTGCCATCCTGCA 60.153 57.895 0.00 0.00 39.37 4.41
162 178 0.752743 GTATGCCTGCCATCCTGCAA 60.753 55.000 0.00 0.00 41.51 4.08
163 179 0.186630 TATGCCTGCCATCCTGCAAT 59.813 50.000 0.00 0.00 41.51 3.56
164 180 0.186630 ATGCCTGCCATCCTGCAATA 59.813 50.000 0.00 0.00 41.51 1.90
165 181 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
166 182 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
167 183 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
168 184 2.719739 CCTGCCATCCTGCAATATAGG 58.280 52.381 0.00 0.00 41.51 2.57
169 185 2.040813 CCTGCCATCCTGCAATATAGGT 59.959 50.000 0.00 0.00 41.51 3.08
170 186 3.341823 CTGCCATCCTGCAATATAGGTC 58.658 50.000 0.00 0.00 41.51 3.85
171 187 2.289631 TGCCATCCTGCAATATAGGTCG 60.290 50.000 0.00 0.00 38.56 4.79
172 188 2.289694 GCCATCCTGCAATATAGGTCGT 60.290 50.000 0.00 0.00 36.67 4.34
173 189 3.807209 GCCATCCTGCAATATAGGTCGTT 60.807 47.826 0.00 0.00 36.67 3.85
174 190 3.997021 CCATCCTGCAATATAGGTCGTTC 59.003 47.826 0.00 0.00 36.67 3.95
175 191 3.364889 TCCTGCAATATAGGTCGTTCG 57.635 47.619 0.00 0.00 36.67 3.95
176 192 2.953648 TCCTGCAATATAGGTCGTTCGA 59.046 45.455 0.00 0.00 36.67 3.71
177 193 3.572682 TCCTGCAATATAGGTCGTTCGAT 59.427 43.478 0.00 0.00 36.67 3.59
178 194 4.038763 TCCTGCAATATAGGTCGTTCGATT 59.961 41.667 0.00 0.00 36.67 3.34
179 195 4.750098 CCTGCAATATAGGTCGTTCGATTT 59.250 41.667 0.00 0.00 0.00 2.17
180 196 5.924254 CCTGCAATATAGGTCGTTCGATTTA 59.076 40.000 0.00 0.00 0.00 1.40
181 197 6.590292 CCTGCAATATAGGTCGTTCGATTTAT 59.410 38.462 0.00 3.17 0.00 1.40
182 198 7.758076 CCTGCAATATAGGTCGTTCGATTTATA 59.242 37.037 0.00 5.05 0.00 0.98
183 199 9.302345 CTGCAATATAGGTCGTTCGATTTATAT 57.698 33.333 0.00 6.83 0.00 0.86
184 200 9.297586 TGCAATATAGGTCGTTCGATTTATATC 57.702 33.333 14.99 9.08 0.00 1.63
185 201 9.517609 GCAATATAGGTCGTTCGATTTATATCT 57.482 33.333 14.99 8.28 0.00 1.98
189 205 5.450171 AGGTCGTTCGATTTATATCTGACG 58.550 41.667 0.00 9.98 37.72 4.35
190 206 4.615961 GGTCGTTCGATTTATATCTGACGG 59.384 45.833 13.73 0.00 37.35 4.79
191 207 5.446709 GTCGTTCGATTTATATCTGACGGA 58.553 41.667 13.73 0.00 37.35 4.69
192 208 6.084925 GTCGTTCGATTTATATCTGACGGAT 58.915 40.000 1.60 1.60 37.35 4.18
193 209 7.239271 GTCGTTCGATTTATATCTGACGGATA 58.761 38.462 6.45 6.45 40.69 2.59
194 210 7.425882 GTCGTTCGATTTATATCTGACGGATAG 59.574 40.741 9.78 0.00 39.89 2.08
195 211 6.687531 CGTTCGATTTATATCTGACGGATAGG 59.312 42.308 9.78 0.00 39.89 2.57
196 212 7.413767 CGTTCGATTTATATCTGACGGATAGGA 60.414 40.741 9.78 0.00 39.89 2.94
197 213 7.933215 TCGATTTATATCTGACGGATAGGAA 57.067 36.000 9.78 7.20 39.89 3.36
198 214 7.986562 TCGATTTATATCTGACGGATAGGAAG 58.013 38.462 9.78 0.63 39.89 3.46
199 215 7.067129 TCGATTTATATCTGACGGATAGGAAGG 59.933 40.741 9.78 4.46 39.89 3.46
200 216 7.067129 CGATTTATATCTGACGGATAGGAAGGA 59.933 40.741 9.78 0.00 39.89 3.36
201 217 8.666129 ATTTATATCTGACGGATAGGAAGGAA 57.334 34.615 9.78 0.15 39.89 3.36
202 218 8.486942 TTTATATCTGACGGATAGGAAGGAAA 57.513 34.615 9.78 1.82 39.89 3.13
203 219 4.674281 ATCTGACGGATAGGAAGGAAAC 57.326 45.455 0.00 0.00 32.04 2.78
204 220 4.290942 ATCTGACGGATAGGAAGGAAACT 58.709 43.478 0.00 0.00 35.69 2.66
205 221 4.863548 TCTGACGGATAGGAAGGAAACTA 58.136 43.478 0.00 0.00 42.68 2.24
206 222 5.455872 TCTGACGGATAGGAAGGAAACTAT 58.544 41.667 0.00 0.00 42.68 2.12
207 223 5.897824 TCTGACGGATAGGAAGGAAACTATT 59.102 40.000 0.00 0.00 42.68 1.73
208 224 5.914033 TGACGGATAGGAAGGAAACTATTG 58.086 41.667 0.00 0.00 42.68 1.90
209 225 4.704965 ACGGATAGGAAGGAAACTATTGC 58.295 43.478 0.00 0.00 42.68 3.56
210 226 4.163458 ACGGATAGGAAGGAAACTATTGCA 59.837 41.667 0.00 0.00 42.68 4.08
211 227 5.123227 CGGATAGGAAGGAAACTATTGCAA 58.877 41.667 0.00 0.00 42.68 4.08
212 228 5.765182 CGGATAGGAAGGAAACTATTGCAAT 59.235 40.000 17.56 17.56 42.68 3.56
213 229 6.263168 CGGATAGGAAGGAAACTATTGCAATT 59.737 38.462 18.75 0.00 42.68 2.32
214 230 7.201821 CGGATAGGAAGGAAACTATTGCAATTT 60.202 37.037 18.75 6.74 42.68 1.82
215 231 8.478066 GGATAGGAAGGAAACTATTGCAATTTT 58.522 33.333 18.75 12.90 42.68 1.82
216 232 9.305925 GATAGGAAGGAAACTATTGCAATTTTG 57.694 33.333 18.75 10.79 42.68 2.44
231 247 5.416862 CAATTTTGCAAAAAGGTACCCAC 57.583 39.130 27.10 0.00 0.00 4.61
232 248 4.762289 ATTTTGCAAAAAGGTACCCACA 57.238 36.364 27.10 1.37 0.00 4.17
233 249 4.762289 TTTTGCAAAAAGGTACCCACAT 57.238 36.364 21.94 0.00 0.00 3.21
234 250 4.329462 TTTGCAAAAAGGTACCCACATC 57.671 40.909 10.02 0.00 0.00 3.06
235 251 3.237268 TGCAAAAAGGTACCCACATCT 57.763 42.857 8.74 0.00 0.00 2.90
236 252 3.153919 TGCAAAAAGGTACCCACATCTC 58.846 45.455 8.74 0.00 0.00 2.75
237 253 3.181434 TGCAAAAAGGTACCCACATCTCT 60.181 43.478 8.74 0.00 0.00 3.10
238 254 3.440522 GCAAAAAGGTACCCACATCTCTC 59.559 47.826 8.74 0.00 0.00 3.20
239 255 4.807643 GCAAAAAGGTACCCACATCTCTCT 60.808 45.833 8.74 0.00 0.00 3.10
240 256 4.828072 AAAAGGTACCCACATCTCTCTC 57.172 45.455 8.74 0.00 0.00 3.20
241 257 2.463047 AGGTACCCACATCTCTCTCC 57.537 55.000 8.74 0.00 0.00 3.71
242 258 1.646447 AGGTACCCACATCTCTCTCCA 59.354 52.381 8.74 0.00 0.00 3.86
243 259 1.757699 GGTACCCACATCTCTCTCCAC 59.242 57.143 0.00 0.00 0.00 4.02
244 260 2.457598 GTACCCACATCTCTCTCCACA 58.542 52.381 0.00 0.00 0.00 4.17
245 261 2.260639 ACCCACATCTCTCTCCACAT 57.739 50.000 0.00 0.00 0.00 3.21
246 262 2.555664 ACCCACATCTCTCTCCACATT 58.444 47.619 0.00 0.00 0.00 2.71
247 263 2.915604 ACCCACATCTCTCTCCACATTT 59.084 45.455 0.00 0.00 0.00 2.32
248 264 3.276857 CCCACATCTCTCTCCACATTTG 58.723 50.000 0.00 0.00 0.00 2.32
249 265 2.681848 CCACATCTCTCTCCACATTTGC 59.318 50.000 0.00 0.00 0.00 3.68
250 266 3.340928 CACATCTCTCTCCACATTTGCA 58.659 45.455 0.00 0.00 0.00 4.08
251 267 3.754850 CACATCTCTCTCCACATTTGCAA 59.245 43.478 0.00 0.00 0.00 4.08
252 268 4.216902 CACATCTCTCTCCACATTTGCAAA 59.783 41.667 15.44 15.44 0.00 3.68
253 269 5.014858 ACATCTCTCTCCACATTTGCAAAT 58.985 37.500 18.99 18.99 0.00 2.32
254 270 6.094464 CACATCTCTCTCCACATTTGCAAATA 59.906 38.462 23.69 8.18 0.00 1.40
255 271 6.660521 ACATCTCTCTCCACATTTGCAAATAA 59.339 34.615 23.69 9.41 0.00 1.40
256 272 6.748333 TCTCTCTCCACATTTGCAAATAAG 57.252 37.500 23.69 17.76 0.00 1.73
257 273 5.649395 TCTCTCTCCACATTTGCAAATAAGG 59.351 40.000 23.69 24.65 0.00 2.69
258 274 4.158394 TCTCTCCACATTTGCAAATAAGGC 59.842 41.667 23.69 0.00 0.00 4.35
259 275 3.195396 TCTCCACATTTGCAAATAAGGCC 59.805 43.478 23.69 0.00 0.00 5.19
260 276 3.172339 TCCACATTTGCAAATAAGGCCT 58.828 40.909 23.69 0.00 0.00 5.19
261 277 3.582208 TCCACATTTGCAAATAAGGCCTT 59.418 39.130 23.69 24.18 0.00 4.35
262 278 3.934579 CCACATTTGCAAATAAGGCCTTC 59.065 43.478 24.49 7.84 0.00 3.46
263 279 3.934579 CACATTTGCAAATAAGGCCTTCC 59.065 43.478 24.49 7.15 0.00 3.46
264 280 3.055167 ACATTTGCAAATAAGGCCTTCCC 60.055 43.478 24.49 7.52 0.00 3.97
266 282 2.143876 TGCAAATAAGGCCTTCCCTC 57.856 50.000 24.49 9.38 45.62 4.30
267 283 1.025041 GCAAATAAGGCCTTCCCTCG 58.975 55.000 24.49 9.34 45.62 4.63
268 284 1.682087 GCAAATAAGGCCTTCCCTCGT 60.682 52.381 24.49 0.00 45.62 4.18
269 285 2.723273 CAAATAAGGCCTTCCCTCGTT 58.277 47.619 24.49 5.37 45.62 3.85
270 286 2.683362 CAAATAAGGCCTTCCCTCGTTC 59.317 50.000 24.49 0.00 45.62 3.95
271 287 1.580059 ATAAGGCCTTCCCTCGTTCA 58.420 50.000 24.49 0.18 45.62 3.18
272 288 1.580059 TAAGGCCTTCCCTCGTTCAT 58.420 50.000 24.49 0.00 45.62 2.57
273 289 0.698818 AAGGCCTTCCCTCGTTCATT 59.301 50.000 13.78 0.00 45.62 2.57
274 290 0.253327 AGGCCTTCCCTCGTTCATTC 59.747 55.000 0.00 0.00 41.21 2.67
275 291 0.253327 GGCCTTCCCTCGTTCATTCT 59.747 55.000 0.00 0.00 0.00 2.40
276 292 1.340114 GGCCTTCCCTCGTTCATTCTT 60.340 52.381 0.00 0.00 0.00 2.52
277 293 2.010497 GCCTTCCCTCGTTCATTCTTC 58.990 52.381 0.00 0.00 0.00 2.87
278 294 2.355209 GCCTTCCCTCGTTCATTCTTCT 60.355 50.000 0.00 0.00 0.00 2.85
279 295 3.526534 CCTTCCCTCGTTCATTCTTCTC 58.473 50.000 0.00 0.00 0.00 2.87
280 296 3.196685 CCTTCCCTCGTTCATTCTTCTCT 59.803 47.826 0.00 0.00 0.00 3.10
281 297 4.429108 CTTCCCTCGTTCATTCTTCTCTC 58.571 47.826 0.00 0.00 0.00 3.20
282 298 3.702792 TCCCTCGTTCATTCTTCTCTCT 58.297 45.455 0.00 0.00 0.00 3.10
283 299 3.697045 TCCCTCGTTCATTCTTCTCTCTC 59.303 47.826 0.00 0.00 0.00 3.20
284 300 3.445450 CCCTCGTTCATTCTTCTCTCTCA 59.555 47.826 0.00 0.00 0.00 3.27
285 301 4.420168 CCTCGTTCATTCTTCTCTCTCAC 58.580 47.826 0.00 0.00 0.00 3.51
286 302 4.082517 CCTCGTTCATTCTTCTCTCTCACA 60.083 45.833 0.00 0.00 0.00 3.58
287 303 5.453567 TCGTTCATTCTTCTCTCTCACAA 57.546 39.130 0.00 0.00 0.00 3.33
288 304 5.465051 TCGTTCATTCTTCTCTCTCACAAG 58.535 41.667 0.00 0.00 0.00 3.16
289 305 5.241728 TCGTTCATTCTTCTCTCTCACAAGA 59.758 40.000 0.00 0.00 0.00 3.02
290 306 6.071672 TCGTTCATTCTTCTCTCTCACAAGAT 60.072 38.462 0.00 0.00 0.00 2.40
291 307 7.121315 TCGTTCATTCTTCTCTCTCACAAGATA 59.879 37.037 0.00 0.00 0.00 1.98
292 308 7.757173 CGTTCATTCTTCTCTCTCACAAGATAA 59.243 37.037 0.00 0.00 0.00 1.75
293 309 9.429359 GTTCATTCTTCTCTCTCACAAGATAAA 57.571 33.333 0.00 0.00 0.00 1.40
294 310 8.994429 TCATTCTTCTCTCTCACAAGATAAAC 57.006 34.615 0.00 0.00 0.00 2.01
295 311 8.811017 TCATTCTTCTCTCTCACAAGATAAACT 58.189 33.333 0.00 0.00 0.00 2.66
298 314 8.871629 TCTTCTCTCTCACAAGATAAACTACT 57.128 34.615 0.00 0.00 0.00 2.57
299 315 8.952278 TCTTCTCTCTCACAAGATAAACTACTC 58.048 37.037 0.00 0.00 0.00 2.59
300 316 8.637196 TTCTCTCTCACAAGATAAACTACTCA 57.363 34.615 0.00 0.00 0.00 3.41
301 317 8.815565 TCTCTCTCACAAGATAAACTACTCAT 57.184 34.615 0.00 0.00 0.00 2.90
302 318 9.907229 TCTCTCTCACAAGATAAACTACTCATA 57.093 33.333 0.00 0.00 0.00 2.15
303 319 9.944663 CTCTCTCACAAGATAAACTACTCATAC 57.055 37.037 0.00 0.00 0.00 2.39
304 320 9.462606 TCTCTCACAAGATAAACTACTCATACA 57.537 33.333 0.00 0.00 0.00 2.29
309 325 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
310 326 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
316 332 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
317 333 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
318 334 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
319 335 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
320 336 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
321 337 8.510243 ACTCATACAAATGCATCTTGATGTTA 57.490 30.769 20.96 9.02 32.76 2.41
322 338 8.400947 ACTCATACAAATGCATCTTGATGTTAC 58.599 33.333 20.96 0.00 32.76 2.50
323 339 7.408910 TCATACAAATGCATCTTGATGTTACG 58.591 34.615 20.96 7.10 32.76 3.18
324 340 5.627499 ACAAATGCATCTTGATGTTACGT 57.373 34.783 20.96 0.00 0.00 3.57
325 341 5.393124 ACAAATGCATCTTGATGTTACGTG 58.607 37.500 20.96 7.02 0.00 4.49
326 342 3.680642 ATGCATCTTGATGTTACGTGC 57.319 42.857 11.61 0.00 0.00 5.34
327 343 2.421619 TGCATCTTGATGTTACGTGCA 58.578 42.857 11.61 0.00 38.62 4.57
328 344 2.810852 TGCATCTTGATGTTACGTGCAA 59.189 40.909 11.61 0.00 38.07 4.08
329 345 3.163594 GCATCTTGATGTTACGTGCAAC 58.836 45.455 11.61 0.00 0.00 4.17
340 356 4.372235 GTGCAACGCATGAGCATC 57.628 55.556 0.00 0.00 41.91 3.91
341 357 1.798735 GTGCAACGCATGAGCATCT 59.201 52.632 0.00 0.00 41.91 2.90
342 358 0.169672 GTGCAACGCATGAGCATCTT 59.830 50.000 0.00 0.00 41.91 2.40
343 359 0.169451 TGCAACGCATGAGCATCTTG 59.831 50.000 0.00 0.00 42.60 3.02
384 404 3.193267 TGTGATTAGTTTGCTCCAATGCC 59.807 43.478 0.00 0.00 0.00 4.40
464 485 6.016693 TGCATCATCGTGGAAAACTTCTTTTA 60.017 34.615 0.00 0.00 29.21 1.52
623 648 0.948678 GTTTCCAGTTAGCGGTGCAA 59.051 50.000 0.00 0.00 0.00 4.08
678 703 8.157476 AGACAGAAGTTGGTACAGATATGTTTT 58.843 33.333 0.00 0.00 42.39 2.43
780 805 5.151632 TCGTTAAAGACAACACAGAAAGC 57.848 39.130 0.00 0.00 0.00 3.51
960 986 1.244019 GCCACACACATCTCCCAACC 61.244 60.000 0.00 0.00 0.00 3.77
1003 1029 4.774726 TCTCTCCTCTTCAAACAGCTATGT 59.225 41.667 0.00 0.00 43.15 2.29
1019 1045 4.003648 GCTATGTCAGCCACTAGTTTTGT 58.996 43.478 0.00 0.00 45.23 2.83
1020 1046 5.175859 GCTATGTCAGCCACTAGTTTTGTA 58.824 41.667 0.00 0.00 45.23 2.41
1060 1086 1.730064 GCATTTTGCTCTTGTGCCATG 59.270 47.619 0.00 0.00 40.96 3.66
1138 1164 2.289506 GGGGGTTTCAGAGAGTGTACAC 60.290 54.545 18.56 18.56 0.00 2.90
1182 1208 3.867723 ACTTCGTCAAGTGAGGTCG 57.132 52.632 1.31 0.00 41.64 4.79
1194 1220 3.003173 AGGTCGCAAGCAGGCCTA 61.003 61.111 3.98 0.00 37.18 3.93
1224 1250 7.769220 AGTATTTTGATGAGGAAAATGAGCAG 58.231 34.615 0.00 0.00 35.25 4.24
1233 1259 2.726241 GGAAAATGAGCAGTTTCGTTGC 59.274 45.455 14.68 1.05 43.80 4.17
1235 1261 3.648339 AAATGAGCAGTTTCGTTGCAT 57.352 38.095 0.00 0.00 43.92 3.96
1329 1356 6.042093 TGGATTAGTCTACATCATCCAAGGTC 59.958 42.308 8.10 0.00 40.39 3.85
1337 1364 3.201290 CATCATCCAAGGTCTGTGTAGC 58.799 50.000 0.00 0.00 0.00 3.58
1342 1369 3.674997 TCCAAGGTCTGTGTAGCAATTC 58.325 45.455 0.00 0.00 0.00 2.17
1350 1377 7.765307 AGGTCTGTGTAGCAATTCAATTAATG 58.235 34.615 0.00 0.00 0.00 1.90
1448 1910 8.560355 TCTAACACTAACATGCACATATGTTT 57.440 30.769 5.37 0.03 46.18 2.83
1466 1928 2.358322 TTTCACCCAGGAAGTGGTTC 57.642 50.000 0.00 0.00 46.37 3.62
1467 1929 1.518367 TTCACCCAGGAAGTGGTTCT 58.482 50.000 0.00 0.00 46.37 3.01
1483 1945 3.078837 GGTTCTGCCGGATTGTCTTTTA 58.921 45.455 5.05 0.00 0.00 1.52
1538 2000 5.558818 TCAAAAATATGGGCAAGCACAATT 58.441 33.333 0.00 0.27 30.82 2.32
1584 2046 4.843220 AAAGTTCAAAGATGAGCACCAG 57.157 40.909 0.00 0.00 39.08 4.00
1587 2049 4.070716 AGTTCAAAGATGAGCACCAGAAG 58.929 43.478 0.00 0.00 39.08 2.85
1601 2063 2.294074 CCAGAAGGTTCACCGTTTCAA 58.706 47.619 1.91 0.00 42.08 2.69
1702 2164 6.825284 TCTATGTTTTCGACGTAAACAACA 57.175 33.333 28.46 20.24 45.46 3.33
1715 2177 6.730175 ACGTAAACAACAATGCTAATCAACA 58.270 32.000 0.00 0.00 0.00 3.33
1719 2181 9.190858 GTAAACAACAATGCTAATCAACATGAA 57.809 29.630 0.00 0.00 0.00 2.57
1720 2182 8.659925 AAACAACAATGCTAATCAACATGAAA 57.340 26.923 0.00 0.00 0.00 2.69
1740 2202 8.519526 CATGAAACTAGGCATAAGGTAACAAAA 58.480 33.333 0.00 0.00 41.41 2.44
1741 2203 8.466617 TGAAACTAGGCATAAGGTAACAAAAA 57.533 30.769 0.00 0.00 41.41 1.94
1817 2280 9.959749 ACTGTATTTAATGTTGTTTACAAGTGG 57.040 29.630 0.00 0.00 40.89 4.00
1866 2329 9.311916 TGATCAAACTTGTAGGAATTTTTGTTG 57.688 29.630 0.00 0.00 0.00 3.33
1902 2365 2.664085 GAGTTCGCAACTTCACTCTAGC 59.336 50.000 3.56 0.00 43.03 3.42
1932 2395 1.790755 TCAGTGGTTTCGATGTTCGG 58.209 50.000 0.00 0.00 40.88 4.30
1940 2403 0.871722 TTCGATGTTCGGTTGCTTGG 59.128 50.000 0.00 0.00 40.88 3.61
1995 2458 5.294060 GCAAAGGCTTCAAAGTCAAAATGAA 59.706 36.000 0.00 0.00 36.96 2.57
1996 2459 6.183360 GCAAAGGCTTCAAAGTCAAAATGAAA 60.183 34.615 0.00 0.00 36.96 2.69
1997 2460 7.467675 GCAAAGGCTTCAAAGTCAAAATGAAAT 60.468 33.333 0.00 0.00 36.96 2.17
1998 2461 7.486802 AAGGCTTCAAAGTCAAAATGAAATG 57.513 32.000 0.00 0.00 33.08 2.32
1999 2462 5.993441 AGGCTTCAAAGTCAAAATGAAATGG 59.007 36.000 0.00 0.00 33.08 3.16
2000 2463 5.179929 GGCTTCAAAGTCAAAATGAAATGGG 59.820 40.000 0.00 0.00 33.08 4.00
2010 2473 8.253113 AGTCAAAATGAAATGGGTGACATAATC 58.747 33.333 4.60 0.00 39.40 1.75
2124 2587 3.558931 TCTCAGGCAAAACACTCTCAA 57.441 42.857 0.00 0.00 0.00 3.02
2154 2617 1.457346 CTCAAATGGGGCAGTCTCAC 58.543 55.000 0.00 0.00 0.00 3.51
2156 2619 1.002134 AAATGGGGCAGTCTCACGG 60.002 57.895 0.00 0.00 0.00 4.94
2164 2627 0.108424 GCAGTCTCACGGAGAGCAAT 60.108 55.000 4.13 0.00 44.35 3.56
2176 2639 2.357569 GGAGAGCAATCTCAAATGGGGT 60.358 50.000 7.51 0.00 41.81 4.95
2181 2644 3.525199 AGCAATCTCAAATGGGGTAGTCT 59.475 43.478 0.00 0.00 0.00 3.24
2184 2647 4.762289 ATCTCAAATGGGGTAGTCTCAC 57.238 45.455 0.00 0.00 0.00 3.51
2214 2677 1.272092 CCTCAAATGGGGCAGTCTCAA 60.272 52.381 0.00 0.00 0.00 3.02
2261 2724 0.682209 CAAATGGGGCAGTCTCAGGG 60.682 60.000 0.00 0.00 0.00 4.45
2319 2782 2.421248 GGGAGGGCAATCTCAAGAAGAG 60.421 54.545 3.91 0.00 46.14 2.85
2371 2834 3.202548 CCTCATGCAGGGCAATCTT 57.797 52.632 0.00 0.00 43.62 2.40
2462 2925 1.134367 GAACATCGACGATCCCAGTCA 59.866 52.381 7.54 0.00 38.46 3.41
2499 2962 1.352882 CGCGTGCCGGTACAATAACA 61.353 55.000 23.00 0.00 0.00 2.41
2510 2973 4.089493 CGGTACAATAACACGTCTCAACAG 59.911 45.833 0.00 0.00 0.00 3.16
2635 3099 5.710513 AGCTTCACAATGCAATTCTAACA 57.289 34.783 0.00 0.00 31.22 2.41
2639 3103 7.756722 AGCTTCACAATGCAATTCTAACATTAC 59.243 33.333 0.00 0.00 31.22 1.89
2643 3107 7.040132 TCACAATGCAATTCTAACATTACACCA 60.040 33.333 0.00 0.00 31.22 4.17
2661 3125 8.725405 TTACACCATACATAATTTGTGATCGT 57.275 30.769 0.00 0.00 39.48 3.73
2736 3200 4.909695 ACATGATCCAAGGACATATCTGGA 59.090 41.667 0.00 0.00 0.00 3.86
2741 3205 5.974156 TCCAAGGACATATCTGGATTCAA 57.026 39.130 0.00 0.00 0.00 2.69
2792 3256 3.087906 GGCCTTCTTAGCCCGGGA 61.088 66.667 29.31 0.00 45.16 5.14
2813 3277 6.764085 CGGGACAACTATTAATCATACCACAA 59.236 38.462 0.00 0.00 0.00 3.33
2876 3340 8.507249 AGCAAGTACATTGAATTCAAGACTAAC 58.493 33.333 24.17 19.05 41.83 2.34
2878 3342 8.708742 CAAGTACATTGAATTCAAGACTAACGA 58.291 33.333 24.17 0.15 41.83 3.85
2943 3407 2.700773 GCCTTGCCCGTTGATGTCC 61.701 63.158 0.00 0.00 0.00 4.02
2956 3420 1.027357 GATGTCCTCGCCAATGCATT 58.973 50.000 5.99 5.99 37.32 3.56
2981 3445 2.045561 TCTCTAGGACAGAAGCTCGG 57.954 55.000 0.00 0.00 31.12 4.63
2995 3459 2.633488 AGCTCGGAGCCTCAAATTTAC 58.367 47.619 25.49 0.00 43.77 2.01
3020 3484 2.774809 GGAAGAGGAGCTGGGAGTATTT 59.225 50.000 0.00 0.00 0.00 1.40
3048 3512 8.703604 TCCTAAATTCAGTCAAAGTATCTTCG 57.296 34.615 0.00 0.00 0.00 3.79
3065 3529 6.809976 ATCTTCGATAGTTTTCCTAAGGGT 57.190 37.500 0.00 0.00 37.40 4.34
3078 3542 3.833070 TCCTAAGGGTGAAGAAGAGTCAC 59.167 47.826 0.00 0.00 43.87 3.67
3087 3551 5.119694 GTGAAGAAGAGTCACCTTCAAAGT 58.880 41.667 21.27 0.00 45.13 2.66
3094 3558 3.554934 AGTCACCTTCAAAGTGCATGAA 58.445 40.909 0.00 1.52 35.14 2.57
3119 3583 5.426689 AATGTCAGAACTAGCTCATGGAA 57.573 39.130 0.00 0.00 0.00 3.53
3136 3600 9.674824 GCTCATGGAATAAAATAAAGACATCAG 57.325 33.333 0.00 0.00 0.00 2.90
3148 3612 5.791336 AAAGACATCAGTGAGTGTGTAGA 57.209 39.130 11.40 0.00 0.00 2.59
3232 3696 9.973661 TTTCATATGTTTATCTTTCTGGAAGGA 57.026 29.630 1.90 0.00 35.98 3.36
3247 3711 7.219484 TCTGGAAGGAAATTTCATGAACTTC 57.781 36.000 19.49 19.87 33.87 3.01
3252 3716 7.114953 GGAAGGAAATTTCATGAACTTCGTTTC 59.885 37.037 24.29 21.41 35.07 2.78
3257 3721 3.953874 TCATGAACTTCGTTTCGCAAA 57.046 38.095 0.00 0.00 0.00 3.68
3265 3729 4.541779 ACTTCGTTTCGCAAATTGCATTA 58.458 34.783 18.65 0.00 45.36 1.90
3268 3732 2.027926 CGTTTCGCAAATTGCATTAGCC 59.972 45.455 18.65 0.00 45.36 3.93
3284 3748 6.484643 TGCATTAGCCAATTCTTCATCTAGAC 59.515 38.462 0.00 0.00 41.13 2.59
3296 3760 7.117285 TCTTCATCTAGACAGTGTGCATATT 57.883 36.000 0.00 0.00 0.00 1.28
3306 3770 8.299262 AGACAGTGTGCATATTTTATCGTATC 57.701 34.615 0.00 0.00 0.00 2.24
3308 3772 9.406828 GACAGTGTGCATATTTTATCGTATCTA 57.593 33.333 0.00 0.00 0.00 1.98
3347 3811 3.246936 GGTAGTGTTTGTCGTTTCTCACC 59.753 47.826 0.00 0.00 0.00 4.02
3368 3832 5.351465 CACCGTAGCAATACAAATTCTCACT 59.649 40.000 0.00 0.00 0.00 3.41
3369 3833 5.351465 ACCGTAGCAATACAAATTCTCACTG 59.649 40.000 0.00 0.00 0.00 3.66
3377 3841 7.219535 GCAATACAAATTCTCACTGTAGCAATG 59.780 37.037 0.00 0.00 0.00 2.82
3478 3942 2.214216 TGGTGGCTACGGTCAGCTT 61.214 57.895 6.00 0.00 44.74 3.74
3524 3988 2.158971 GCCCCATTTCACTTGTGTTGTT 60.159 45.455 0.46 0.00 0.00 2.83
3536 4000 5.845433 CACTTGTGTTGTTTTCTGCAAAAAC 59.155 36.000 20.72 20.72 39.78 2.43
3570 4035 6.094048 CGTTGGGTGAGTAATTTCTCATTCAT 59.906 38.462 16.59 0.00 44.59 2.57
3585 4050 5.525012 TCTCATTCATGCTTAAGACGAATGG 59.475 40.000 25.63 20.12 41.97 3.16
3599 4064 3.966154 ACGAATGGACGATGATGTAGAC 58.034 45.455 0.00 0.00 37.03 2.59
3606 4071 4.202020 TGGACGATGATGTAGACTTGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
3611 4076 2.230266 TGATGTAGACTTGTAGCGTGCA 59.770 45.455 0.00 0.00 0.00 4.57
3639 4104 4.164030 AGTTCTTCCTTTGCAATTGGGTTT 59.836 37.500 16.00 0.00 0.00 3.27
3642 4107 5.852827 TCTTCCTTTGCAATTGGGTTTAAG 58.147 37.500 16.00 12.55 0.00 1.85
3655 4120 9.423061 CAATTGGGTTTAAGTCTTTCTTTATGG 57.577 33.333 0.00 0.00 37.56 2.74
3671 4136 4.806952 TTATGGGGAAATTAGGTCTGGG 57.193 45.455 0.00 0.00 0.00 4.45
3672 4137 2.068831 TGGGGAAATTAGGTCTGGGT 57.931 50.000 0.00 0.00 0.00 4.51
3678 4143 6.086775 GGGGAAATTAGGTCTGGGTACTATA 58.913 44.000 0.00 0.00 0.00 1.31
3679 4144 6.734281 GGGGAAATTAGGTCTGGGTACTATAT 59.266 42.308 0.00 0.00 0.00 0.86
3680 4145 7.092979 GGGGAAATTAGGTCTGGGTACTATATC 60.093 44.444 0.00 0.00 0.00 1.63
3681 4146 7.092979 GGGAAATTAGGTCTGGGTACTATATCC 60.093 44.444 0.00 0.00 0.00 2.59
3682 4147 7.456902 GGAAATTAGGTCTGGGTACTATATCCA 59.543 40.741 0.00 0.00 36.36 3.41
3683 4148 8.808240 AAATTAGGTCTGGGTACTATATCCAA 57.192 34.615 0.00 0.00 38.78 3.53
3684 4149 7.793948 ATTAGGTCTGGGTACTATATCCAAC 57.206 40.000 0.00 0.00 38.78 3.77
3685 4150 5.420215 AGGTCTGGGTACTATATCCAACT 57.580 43.478 0.00 0.00 38.78 3.16
3686 4151 5.789535 AGGTCTGGGTACTATATCCAACTT 58.210 41.667 0.00 0.00 38.78 2.66
3743 4208 1.613437 GGTTGTGCTTGTGCCACTAAT 59.387 47.619 0.00 0.00 38.71 1.73
3767 4232 5.766670 TGATTGCAAATAAATTGGGCACAAA 59.233 32.000 4.97 0.00 40.55 2.83
3826 4303 4.508405 CCACCTCCTTTGACCCATTTCTTA 60.508 45.833 0.00 0.00 0.00 2.10
3829 4306 5.952347 ACCTCCTTTGACCCATTTCTTATTC 59.048 40.000 0.00 0.00 0.00 1.75
3834 4311 6.350445 CCTTTGACCCATTTCTTATTCTGTGG 60.350 42.308 0.00 0.00 0.00 4.17
3925 4411 2.095919 GGCCACGTTGTCAACTATGAAC 60.096 50.000 13.67 7.43 37.30 3.18
3928 4414 4.055360 CCACGTTGTCAACTATGAACAGA 58.945 43.478 13.67 0.00 37.30 3.41
3962 4448 0.172352 CGCTCGAGCTCCTTCTCTTT 59.828 55.000 32.88 0.00 39.32 2.52
3986 4472 0.682852 TACCGCTGCACACCTAGTTT 59.317 50.000 0.00 0.00 0.00 2.66
4001 4487 3.199946 CCTAGTTTGGCCATTCTAGACCA 59.800 47.826 30.13 5.28 33.81 4.02
4012 4498 4.753610 CCATTCTAGACCATACATGTGCAG 59.246 45.833 9.11 0.00 0.00 4.41
4015 4501 4.758688 TCTAGACCATACATGTGCAGTTG 58.241 43.478 9.11 0.00 0.00 3.16
4020 4506 1.540707 CATACATGTGCAGTTGCCACA 59.459 47.619 9.11 6.73 41.18 4.17
4027 4513 0.388659 TGCAGTTGCCACATGAAACC 59.611 50.000 0.00 0.00 41.18 3.27
4028 4514 0.388659 GCAGTTGCCACATGAAACCA 59.611 50.000 0.00 0.00 34.31 3.67
4037 4523 0.753479 ACATGAAACCACCACGCCAA 60.753 50.000 0.00 0.00 0.00 4.52
4041 4527 1.379309 AAACCACCACGCCAACACT 60.379 52.632 0.00 0.00 0.00 3.55
4043 4529 2.515991 CCACCACGCCAACACTGT 60.516 61.111 0.00 0.00 0.00 3.55
4084 4575 0.725117 CGTGTCCCGTGCCTTATTTC 59.275 55.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 84 5.634020 CACACTTGTTTTGTTCCCGTTTAAA 59.366 36.000 0.00 0.00 0.00 1.52
105 121 8.954350 ACGCTGTTTTTATTAGACTAGACTAGA 58.046 33.333 16.55 0.00 0.00 2.43
106 122 9.570488 AACGCTGTTTTTATTAGACTAGACTAG 57.430 33.333 8.00 8.00 0.00 2.57
107 123 9.350357 CAACGCTGTTTTTATTAGACTAGACTA 57.650 33.333 0.00 0.00 0.00 2.59
108 124 7.331193 CCAACGCTGTTTTTATTAGACTAGACT 59.669 37.037 0.00 0.00 0.00 3.24
109 125 7.117379 ACCAACGCTGTTTTTATTAGACTAGAC 59.883 37.037 0.00 0.00 0.00 2.59
110 126 7.156673 ACCAACGCTGTTTTTATTAGACTAGA 58.843 34.615 0.00 0.00 0.00 2.43
111 127 7.360575 ACCAACGCTGTTTTTATTAGACTAG 57.639 36.000 0.00 0.00 0.00 2.57
112 128 8.830201 TTACCAACGCTGTTTTTATTAGACTA 57.170 30.769 0.00 0.00 0.00 2.59
113 129 7.733402 TTACCAACGCTGTTTTTATTAGACT 57.267 32.000 0.00 0.00 0.00 3.24
114 130 8.231837 TCATTACCAACGCTGTTTTTATTAGAC 58.768 33.333 0.00 0.00 0.00 2.59
115 131 8.325421 TCATTACCAACGCTGTTTTTATTAGA 57.675 30.769 0.00 0.00 0.00 2.10
116 132 9.009327 CATCATTACCAACGCTGTTTTTATTAG 57.991 33.333 0.00 0.00 0.00 1.73
117 133 7.971168 CCATCATTACCAACGCTGTTTTTATTA 59.029 33.333 0.00 0.00 0.00 0.98
118 134 6.811170 CCATCATTACCAACGCTGTTTTTATT 59.189 34.615 0.00 0.00 0.00 1.40
119 135 6.071616 ACCATCATTACCAACGCTGTTTTTAT 60.072 34.615 0.00 0.00 0.00 1.40
120 136 5.241949 ACCATCATTACCAACGCTGTTTTTA 59.758 36.000 0.00 0.00 0.00 1.52
121 137 4.038642 ACCATCATTACCAACGCTGTTTTT 59.961 37.500 0.00 0.00 0.00 1.94
122 138 3.572255 ACCATCATTACCAACGCTGTTTT 59.428 39.130 0.00 0.00 0.00 2.43
123 139 3.153919 ACCATCATTACCAACGCTGTTT 58.846 40.909 0.00 0.00 0.00 2.83
124 140 2.790433 ACCATCATTACCAACGCTGTT 58.210 42.857 0.00 0.00 0.00 3.16
125 141 2.489938 ACCATCATTACCAACGCTGT 57.510 45.000 0.00 0.00 0.00 4.40
126 142 3.303990 GCATACCATCATTACCAACGCTG 60.304 47.826 0.00 0.00 0.00 5.18
127 143 2.878406 GCATACCATCATTACCAACGCT 59.122 45.455 0.00 0.00 0.00 5.07
128 144 2.031157 GGCATACCATCATTACCAACGC 60.031 50.000 0.00 0.00 35.26 4.84
129 145 3.250762 CAGGCATACCATCATTACCAACG 59.749 47.826 0.00 0.00 39.06 4.10
130 146 3.004734 GCAGGCATACCATCATTACCAAC 59.995 47.826 0.00 0.00 39.06 3.77
131 147 3.221771 GCAGGCATACCATCATTACCAA 58.778 45.455 0.00 0.00 39.06 3.67
132 148 2.488891 GGCAGGCATACCATCATTACCA 60.489 50.000 0.00 0.00 39.06 3.25
133 149 2.162681 GGCAGGCATACCATCATTACC 58.837 52.381 0.00 0.00 39.06 2.85
134 150 2.862541 TGGCAGGCATACCATCATTAC 58.137 47.619 0.00 0.00 39.06 1.89
135 151 3.812611 ATGGCAGGCATACCATCATTA 57.187 42.857 7.92 0.00 43.26 1.90
136 152 2.688902 ATGGCAGGCATACCATCATT 57.311 45.000 7.92 0.00 43.26 2.57
141 157 1.533219 CAGGATGGCAGGCATACCA 59.467 57.895 15.69 0.00 41.06 3.25
142 158 1.900498 GCAGGATGGCAGGCATACC 60.900 63.158 15.69 14.76 35.86 2.73
143 159 0.752743 TTGCAGGATGGCAGGCATAC 60.753 55.000 11.45 11.45 45.88 2.39
144 160 0.186630 ATTGCAGGATGGCAGGCATA 59.813 50.000 9.96 0.00 45.88 3.14
145 161 0.186630 TATTGCAGGATGGCAGGCAT 59.813 50.000 9.73 9.73 45.88 4.40
146 162 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
147 163 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
148 164 2.040813 ACCTATATTGCAGGATGGCAGG 59.959 50.000 0.00 0.00 45.88 4.85
149 165 3.341823 GACCTATATTGCAGGATGGCAG 58.658 50.000 0.00 0.00 45.88 4.85
150 166 2.289631 CGACCTATATTGCAGGATGGCA 60.290 50.000 0.00 0.00 43.19 4.92
151 167 2.289694 ACGACCTATATTGCAGGATGGC 60.290 50.000 0.00 0.00 36.61 4.40
152 168 3.685139 ACGACCTATATTGCAGGATGG 57.315 47.619 0.00 0.00 36.61 3.51
153 169 3.675225 CGAACGACCTATATTGCAGGATG 59.325 47.826 0.00 0.00 36.61 3.51
154 170 3.572682 TCGAACGACCTATATTGCAGGAT 59.427 43.478 0.00 0.00 36.61 3.24
155 171 2.953648 TCGAACGACCTATATTGCAGGA 59.046 45.455 0.00 0.00 36.61 3.86
156 172 3.364889 TCGAACGACCTATATTGCAGG 57.635 47.619 0.00 0.00 39.25 4.85
157 173 5.907197 AAATCGAACGACCTATATTGCAG 57.093 39.130 0.00 0.00 0.00 4.41
158 174 9.297586 GATATAAATCGAACGACCTATATTGCA 57.702 33.333 14.92 0.00 0.00 4.08
159 175 9.517609 AGATATAAATCGAACGACCTATATTGC 57.482 33.333 14.92 8.29 37.19 3.56
163 179 8.385858 CGTCAGATATAAATCGAACGACCTATA 58.614 37.037 0.00 4.69 42.52 1.31
164 180 7.242079 CGTCAGATATAAATCGAACGACCTAT 58.758 38.462 0.00 2.71 42.52 2.57
165 181 6.347969 CCGTCAGATATAAATCGAACGACCTA 60.348 42.308 13.47 0.00 42.52 3.08
166 182 5.450171 CGTCAGATATAAATCGAACGACCT 58.550 41.667 0.00 0.00 42.52 3.85
167 183 4.615961 CCGTCAGATATAAATCGAACGACC 59.384 45.833 13.47 0.00 42.52 4.79
168 184 5.446709 TCCGTCAGATATAAATCGAACGAC 58.553 41.667 13.47 0.00 42.52 4.34
169 185 5.678132 TCCGTCAGATATAAATCGAACGA 57.322 39.130 13.47 0.00 42.52 3.85
170 186 6.687531 CCTATCCGTCAGATATAAATCGAACG 59.312 42.308 0.00 7.93 41.03 3.95
171 187 7.759465 TCCTATCCGTCAGATATAAATCGAAC 58.241 38.462 0.00 0.00 36.84 3.95
172 188 7.933215 TCCTATCCGTCAGATATAAATCGAA 57.067 36.000 0.00 0.00 36.84 3.71
173 189 7.067129 CCTTCCTATCCGTCAGATATAAATCGA 59.933 40.741 0.00 0.00 36.84 3.59
174 190 7.067129 TCCTTCCTATCCGTCAGATATAAATCG 59.933 40.741 0.00 0.00 36.84 3.34
175 191 8.294954 TCCTTCCTATCCGTCAGATATAAATC 57.705 38.462 0.00 0.00 36.84 2.17
176 192 8.666129 TTCCTTCCTATCCGTCAGATATAAAT 57.334 34.615 0.00 0.00 36.84 1.40
177 193 8.365647 GTTTCCTTCCTATCCGTCAGATATAAA 58.634 37.037 0.00 0.00 36.84 1.40
178 194 7.728981 AGTTTCCTTCCTATCCGTCAGATATAA 59.271 37.037 0.00 0.00 36.84 0.98
179 195 7.239438 AGTTTCCTTCCTATCCGTCAGATATA 58.761 38.462 0.00 0.00 36.84 0.86
180 196 6.078664 AGTTTCCTTCCTATCCGTCAGATAT 58.921 40.000 0.00 0.00 36.84 1.63
181 197 5.455872 AGTTTCCTTCCTATCCGTCAGATA 58.544 41.667 0.00 0.00 36.33 1.98
182 198 4.290942 AGTTTCCTTCCTATCCGTCAGAT 58.709 43.478 0.00 0.00 39.15 2.90
183 199 3.709587 AGTTTCCTTCCTATCCGTCAGA 58.290 45.455 0.00 0.00 0.00 3.27
184 200 5.793030 ATAGTTTCCTTCCTATCCGTCAG 57.207 43.478 0.00 0.00 0.00 3.51
185 201 5.684030 GCAATAGTTTCCTTCCTATCCGTCA 60.684 44.000 0.00 0.00 0.00 4.35
186 202 4.750598 GCAATAGTTTCCTTCCTATCCGTC 59.249 45.833 0.00 0.00 0.00 4.79
187 203 4.163458 TGCAATAGTTTCCTTCCTATCCGT 59.837 41.667 0.00 0.00 0.00 4.69
188 204 4.703897 TGCAATAGTTTCCTTCCTATCCG 58.296 43.478 0.00 0.00 0.00 4.18
189 205 7.588497 AATTGCAATAGTTTCCTTCCTATCC 57.412 36.000 13.39 0.00 0.00 2.59
190 206 9.305925 CAAAATTGCAATAGTTTCCTTCCTATC 57.694 33.333 13.39 0.00 0.00 2.08
224 240 2.457598 TGTGGAGAGAGATGTGGGTAC 58.542 52.381 0.00 0.00 0.00 3.34
225 241 2.919772 TGTGGAGAGAGATGTGGGTA 57.080 50.000 0.00 0.00 0.00 3.69
226 242 2.260639 ATGTGGAGAGAGATGTGGGT 57.739 50.000 0.00 0.00 0.00 4.51
227 243 3.276857 CAAATGTGGAGAGAGATGTGGG 58.723 50.000 0.00 0.00 0.00 4.61
228 244 2.681848 GCAAATGTGGAGAGAGATGTGG 59.318 50.000 0.00 0.00 0.00 4.17
229 245 3.340928 TGCAAATGTGGAGAGAGATGTG 58.659 45.455 0.00 0.00 0.00 3.21
230 246 3.708403 TGCAAATGTGGAGAGAGATGT 57.292 42.857 0.00 0.00 0.00 3.06
231 247 5.578005 ATTTGCAAATGTGGAGAGAGATG 57.422 39.130 23.54 0.00 0.00 2.90
232 248 6.320672 CCTTATTTGCAAATGTGGAGAGAGAT 59.679 38.462 30.43 6.62 0.00 2.75
233 249 5.649395 CCTTATTTGCAAATGTGGAGAGAGA 59.351 40.000 30.43 7.32 0.00 3.10
234 250 5.678107 GCCTTATTTGCAAATGTGGAGAGAG 60.678 44.000 31.67 18.29 0.00 3.20
235 251 4.158394 GCCTTATTTGCAAATGTGGAGAGA 59.842 41.667 31.67 13.71 0.00 3.10
236 252 4.427312 GCCTTATTTGCAAATGTGGAGAG 58.573 43.478 31.67 20.39 0.00 3.20
237 253 3.195396 GGCCTTATTTGCAAATGTGGAGA 59.805 43.478 31.67 14.88 0.00 3.71
238 254 3.196254 AGGCCTTATTTGCAAATGTGGAG 59.804 43.478 31.67 23.26 0.00 3.86
239 255 3.172339 AGGCCTTATTTGCAAATGTGGA 58.828 40.909 31.67 15.77 0.00 4.02
240 256 3.615224 AGGCCTTATTTGCAAATGTGG 57.385 42.857 30.43 28.46 0.00 4.17
241 257 3.934579 GGAAGGCCTTATTTGCAAATGTG 59.065 43.478 30.43 21.90 0.00 3.21
242 258 3.055167 GGGAAGGCCTTATTTGCAAATGT 60.055 43.478 30.43 12.33 0.00 2.71
243 259 3.198417 AGGGAAGGCCTTATTTGCAAATG 59.802 43.478 30.43 17.22 0.00 2.32
244 260 3.452264 GAGGGAAGGCCTTATTTGCAAAT 59.548 43.478 26.72 26.72 0.00 2.32
245 261 2.831526 GAGGGAAGGCCTTATTTGCAAA 59.168 45.455 20.54 15.44 0.00 3.68
246 262 2.456577 GAGGGAAGGCCTTATTTGCAA 58.543 47.619 20.54 0.00 0.00 4.08
247 263 1.681780 CGAGGGAAGGCCTTATTTGCA 60.682 52.381 20.54 0.00 0.00 4.08
248 264 1.025041 CGAGGGAAGGCCTTATTTGC 58.975 55.000 20.54 5.12 0.00 3.68
249 265 2.420058 ACGAGGGAAGGCCTTATTTG 57.580 50.000 20.54 12.94 0.00 2.32
250 266 2.307686 TGAACGAGGGAAGGCCTTATTT 59.692 45.455 20.54 6.38 0.00 1.40
251 267 1.913419 TGAACGAGGGAAGGCCTTATT 59.087 47.619 20.54 6.79 0.00 1.40
252 268 1.580059 TGAACGAGGGAAGGCCTTAT 58.420 50.000 20.54 7.60 0.00 1.73
253 269 1.580059 ATGAACGAGGGAAGGCCTTA 58.420 50.000 20.54 0.00 0.00 2.69
254 270 0.698818 AATGAACGAGGGAAGGCCTT 59.301 50.000 20.65 20.65 0.00 4.35
255 271 0.253327 GAATGAACGAGGGAAGGCCT 59.747 55.000 0.00 0.00 0.00 5.19
256 272 0.253327 AGAATGAACGAGGGAAGGCC 59.747 55.000 0.00 0.00 0.00 5.19
257 273 2.010497 GAAGAATGAACGAGGGAAGGC 58.990 52.381 0.00 0.00 0.00 4.35
258 274 3.196685 AGAGAAGAATGAACGAGGGAAGG 59.803 47.826 0.00 0.00 0.00 3.46
259 275 4.159506 AGAGAGAAGAATGAACGAGGGAAG 59.840 45.833 0.00 0.00 0.00 3.46
260 276 4.090090 AGAGAGAAGAATGAACGAGGGAA 58.910 43.478 0.00 0.00 0.00 3.97
261 277 3.697045 GAGAGAGAAGAATGAACGAGGGA 59.303 47.826 0.00 0.00 0.00 4.20
262 278 3.445450 TGAGAGAGAAGAATGAACGAGGG 59.555 47.826 0.00 0.00 0.00 4.30
263 279 4.082517 TGTGAGAGAGAAGAATGAACGAGG 60.083 45.833 0.00 0.00 0.00 4.63
264 280 5.053140 TGTGAGAGAGAAGAATGAACGAG 57.947 43.478 0.00 0.00 0.00 4.18
265 281 5.241728 TCTTGTGAGAGAGAAGAATGAACGA 59.758 40.000 0.00 0.00 31.13 3.85
266 282 5.465051 TCTTGTGAGAGAGAAGAATGAACG 58.535 41.667 0.00 0.00 31.13 3.95
267 283 8.994429 TTATCTTGTGAGAGAGAAGAATGAAC 57.006 34.615 0.00 0.00 37.50 3.18
268 284 9.429359 GTTTATCTTGTGAGAGAGAAGAATGAA 57.571 33.333 0.00 0.00 37.50 2.57
269 285 8.811017 AGTTTATCTTGTGAGAGAGAAGAATGA 58.189 33.333 0.00 0.00 37.50 2.57
272 288 9.303116 AGTAGTTTATCTTGTGAGAGAGAAGAA 57.697 33.333 0.00 0.00 37.50 2.52
273 289 8.871629 AGTAGTTTATCTTGTGAGAGAGAAGA 57.128 34.615 0.00 0.00 38.29 2.87
274 290 8.735315 TGAGTAGTTTATCTTGTGAGAGAGAAG 58.265 37.037 0.00 0.00 34.85 2.85
275 291 8.637196 TGAGTAGTTTATCTTGTGAGAGAGAA 57.363 34.615 0.00 0.00 34.85 2.87
276 292 8.815565 ATGAGTAGTTTATCTTGTGAGAGAGA 57.184 34.615 0.00 0.00 34.85 3.10
277 293 9.944663 GTATGAGTAGTTTATCTTGTGAGAGAG 57.055 37.037 0.00 0.00 34.85 3.20
278 294 9.462606 TGTATGAGTAGTTTATCTTGTGAGAGA 57.537 33.333 0.00 0.00 34.85 3.10
283 299 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
284 300 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
290 306 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
291 307 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
292 308 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
293 309 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
294 310 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
295 311 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
296 312 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
297 313 7.585210 CGTAACATCAAGATGCATTTGTATGAG 59.415 37.037 22.17 12.56 42.39 2.90
298 314 7.065683 ACGTAACATCAAGATGCATTTGTATGA 59.934 33.333 22.17 15.31 42.39 2.15
299 315 7.164662 CACGTAACATCAAGATGCATTTGTATG 59.835 37.037 9.85 13.57 42.39 2.39
300 316 7.188834 CACGTAACATCAAGATGCATTTGTAT 58.811 34.615 9.85 1.80 42.39 2.29
301 317 6.541969 CACGTAACATCAAGATGCATTTGTA 58.458 36.000 9.85 0.00 42.39 2.41
302 318 5.393124 CACGTAACATCAAGATGCATTTGT 58.607 37.500 9.85 0.00 42.39 2.83
303 319 4.263677 GCACGTAACATCAAGATGCATTTG 59.736 41.667 9.85 7.88 42.39 2.32
304 320 4.082841 TGCACGTAACATCAAGATGCATTT 60.083 37.500 9.85 0.00 42.39 2.32
305 321 3.439825 TGCACGTAACATCAAGATGCATT 59.560 39.130 9.85 1.25 42.39 3.56
306 322 3.009026 TGCACGTAACATCAAGATGCAT 58.991 40.909 9.85 0.00 42.39 3.96
307 323 2.421619 TGCACGTAACATCAAGATGCA 58.578 42.857 9.85 0.00 42.39 3.96
308 324 3.163594 GTTGCACGTAACATCAAGATGC 58.836 45.455 9.85 0.00 42.39 3.91
309 325 3.407252 CGTTGCACGTAACATCAAGATG 58.593 45.455 8.45 8.45 39.58 2.90
310 326 2.159707 GCGTTGCACGTAACATCAAGAT 60.160 45.455 9.76 0.00 44.73 2.40
311 327 1.193650 GCGTTGCACGTAACATCAAGA 59.806 47.619 9.76 0.00 44.73 3.02
312 328 1.070242 TGCGTTGCACGTAACATCAAG 60.070 47.619 9.76 0.00 44.73 3.02
313 329 0.938008 TGCGTTGCACGTAACATCAA 59.062 45.000 9.76 0.00 44.73 2.57
314 330 1.136113 CATGCGTTGCACGTAACATCA 60.136 47.619 9.76 0.13 44.73 3.07
315 331 1.127766 TCATGCGTTGCACGTAACATC 59.872 47.619 9.76 0.00 44.73 3.06
316 332 1.128507 CTCATGCGTTGCACGTAACAT 59.871 47.619 9.76 3.55 44.73 2.71
317 333 0.510790 CTCATGCGTTGCACGTAACA 59.489 50.000 9.76 0.00 44.73 2.41
318 334 0.789383 GCTCATGCGTTGCACGTAAC 60.789 55.000 9.76 0.00 44.73 2.50
319 335 1.224722 TGCTCATGCGTTGCACGTAA 61.225 50.000 9.76 1.16 44.73 3.18
320 336 1.018752 ATGCTCATGCGTTGCACGTA 61.019 50.000 5.61 6.30 44.73 3.57
321 337 2.244436 GATGCTCATGCGTTGCACGT 62.244 55.000 5.61 0.00 44.73 4.49
322 338 1.581912 GATGCTCATGCGTTGCACG 60.582 57.895 5.61 4.61 43.04 5.34
323 339 0.169672 AAGATGCTCATGCGTTGCAC 59.830 50.000 5.61 1.79 43.04 4.57
324 340 0.169451 CAAGATGCTCATGCGTTGCA 59.831 50.000 5.91 5.91 44.86 4.08
325 341 1.138047 GCAAGATGCTCATGCGTTGC 61.138 55.000 0.00 0.00 41.91 4.17
326 342 2.939782 GCAAGATGCTCATGCGTTG 58.060 52.632 0.00 0.00 40.96 4.10
361 377 4.321899 GGCATTGGAGCAAACTAATCACAA 60.322 41.667 0.00 0.00 35.83 3.33
464 485 9.310449 ACACTTAATACGTATCAGGATAAGGAT 57.690 33.333 20.23 10.38 29.36 3.24
515 539 6.575267 TGCTTCGCCAAAGTAGTGTATATTA 58.425 36.000 0.00 0.00 37.31 0.98
544 568 3.902261 TTGCACTTGTGTGATGATGAC 57.098 42.857 2.61 0.00 46.55 3.06
623 648 6.089417 GCTCGCTTTTATGCTTGTTTGTTTAT 59.911 34.615 0.00 0.00 0.00 1.40
780 805 5.921976 TGACTGCAAGCAAACATAGAAAATG 59.078 36.000 0.00 0.00 37.60 2.32
960 986 7.333174 GGAGAGAGAAGTTTTCTTGATGTTAGG 59.667 40.741 0.00 0.00 40.87 2.69
1003 1029 3.056107 AGCGATACAAAACTAGTGGCTGA 60.056 43.478 0.00 0.00 0.00 4.26
1017 1043 6.203915 TGCAAAAGTAAAAAGAGAGCGATACA 59.796 34.615 0.00 0.00 0.00 2.29
1019 1045 6.795098 TGCAAAAGTAAAAAGAGAGCGATA 57.205 33.333 0.00 0.00 0.00 2.92
1020 1046 5.689383 TGCAAAAGTAAAAAGAGAGCGAT 57.311 34.783 0.00 0.00 0.00 4.58
1060 1086 1.767759 AATAGTTGTGCCATGGAGCC 58.232 50.000 18.40 1.96 0.00 4.70
1077 1103 3.172339 TGGGTTAAAGCTCATGCCAAAT 58.828 40.909 0.00 0.00 40.80 2.32
1138 1164 5.694006 GTGTAGATGCTTGTAGCCTATTGAG 59.306 44.000 0.00 0.00 41.51 3.02
1182 1208 2.046314 TCGGTTAGGCCTGCTTGC 60.046 61.111 17.99 0.08 34.25 4.01
1194 1220 7.393234 TCATTTTCCTCATCAAAATACTCGGTT 59.607 33.333 0.00 0.00 32.74 4.44
1224 1250 4.742659 ACAAATACACCAATGCAACGAAAC 59.257 37.500 0.00 0.00 0.00 2.78
1233 1259 4.494035 CGACGGATGACAAATACACCAATG 60.494 45.833 0.00 0.00 0.00 2.82
1235 1261 2.997303 CGACGGATGACAAATACACCAA 59.003 45.455 0.00 0.00 0.00 3.67
1428 1890 6.527722 GGTGAAAACATATGTGCATGTTAGTG 59.472 38.462 9.63 0.00 46.00 2.74
1448 1910 1.142870 CAGAACCACTTCCTGGGTGAA 59.857 52.381 4.85 0.00 41.77 3.18
1466 1928 2.420022 CCAGTAAAAGACAATCCGGCAG 59.580 50.000 0.00 0.00 0.00 4.85
1467 1929 2.039216 TCCAGTAAAAGACAATCCGGCA 59.961 45.455 0.00 0.00 0.00 5.69
1538 2000 0.759959 TTGGCTTTGACCCTGTACGA 59.240 50.000 0.00 0.00 0.00 3.43
1584 2046 3.768468 TGTTTGAAACGGTGAACCTTC 57.232 42.857 3.37 0.00 0.00 3.46
1587 2049 2.424246 TCCTTGTTTGAAACGGTGAACC 59.576 45.455 3.37 0.00 0.00 3.62
1601 2063 3.759581 AGTGCAATGACATCTCCTTGTT 58.240 40.909 0.00 0.00 0.00 2.83
1702 2164 6.377996 TGCCTAGTTTCATGTTGATTAGCATT 59.622 34.615 0.00 0.00 0.00 3.56
1715 2177 8.644374 TTTTGTTACCTTATGCCTAGTTTCAT 57.356 30.769 0.00 0.00 0.00 2.57
1740 2202 6.155049 CCCACATAGATTTGTCCCAAAGATTT 59.845 38.462 0.00 0.00 0.00 2.17
1741 2203 5.658190 CCCACATAGATTTGTCCCAAAGATT 59.342 40.000 0.00 0.00 0.00 2.40
1749 2211 3.644966 TGACCCCACATAGATTTGTCC 57.355 47.619 0.00 0.00 0.00 4.02
1791 2253 9.959749 CCACTTGTAAACAACATTAAATACAGT 57.040 29.630 0.00 0.00 38.10 3.55
1792 2254 8.911662 GCCACTTGTAAACAACATTAAATACAG 58.088 33.333 0.00 0.00 38.10 2.74
1805 2267 4.727507 AACAACATGCCACTTGTAAACA 57.272 36.364 0.00 0.00 30.26 2.83
1817 2280 8.801715 TCAAGAAGAGAAATTAAACAACATGC 57.198 30.769 0.00 0.00 0.00 4.06
1847 2310 5.453198 CCAGCCAACAAAAATTCCTACAAGT 60.453 40.000 0.00 0.00 0.00 3.16
1902 2365 6.007936 TCGAAACCACTGAATATGTTTTGG 57.992 37.500 0.00 0.00 34.38 3.28
1932 2395 1.662044 CAAGGCCTCACCAAGCAAC 59.338 57.895 5.23 0.00 43.14 4.17
1940 2403 3.249687 CTTGTACCCAAGGCCTCAC 57.750 57.895 5.23 0.00 43.62 3.51
2035 2498 7.027161 CGCTGTTGTGTAAAAATAGGCTTTAT 58.973 34.615 0.00 0.00 0.00 1.40
2037 2500 5.009210 TCGCTGTTGTGTAAAAATAGGCTTT 59.991 36.000 0.00 0.00 0.00 3.51
2044 2507 3.563808 TGCTCTCGCTGTTGTGTAAAAAT 59.436 39.130 0.00 0.00 36.97 1.82
2066 2529 3.248024 TGAGTGTGTGGGTAGGATTCTT 58.752 45.455 0.00 0.00 0.00 2.52
2124 2587 2.556114 CCCCATTTGAGGTTGCTCTTCT 60.556 50.000 0.00 0.00 0.00 2.85
2154 2617 1.945394 CCCATTTGAGATTGCTCTCCG 59.055 52.381 0.86 0.00 46.28 4.63
2156 2619 3.010200 ACCCCATTTGAGATTGCTCTC 57.990 47.619 0.00 0.00 46.89 3.20
2164 2627 2.496070 CGTGAGACTACCCCATTTGAGA 59.504 50.000 0.00 0.00 0.00 3.27
2176 2639 1.174783 GGTTGCTCTCCGTGAGACTA 58.825 55.000 6.83 0.00 45.39 2.59
2181 2644 0.756294 TTTGAGGTTGCTCTCCGTGA 59.244 50.000 0.00 0.00 33.04 4.35
2184 2647 1.089920 CCATTTGAGGTTGCTCTCCG 58.910 55.000 0.00 0.00 33.04 4.63
2214 2677 1.988107 TCTCCCTGAATGTGCTTTCCT 59.012 47.619 0.00 0.00 0.00 3.36
2261 2724 5.181433 GGTTGGTCTCCTTGATAGTGTTTTC 59.819 44.000 0.00 0.00 0.00 2.29
2319 2782 2.832201 GGCCCTGCCTGAGATTGC 60.832 66.667 0.00 0.00 46.69 3.56
2371 2834 6.039605 CCACCATAAGTTGATTGTGATGCATA 59.960 38.462 0.00 0.00 32.01 3.14
2462 2925 2.494059 GCGGGTTGTATATGTCAGCAT 58.506 47.619 0.00 0.00 39.03 3.79
2499 2962 0.461339 ACGTTTGGCTGTTGAGACGT 60.461 50.000 0.00 0.00 38.70 4.34
2510 2973 0.898326 AAGGATGGGGAACGTTTGGC 60.898 55.000 0.46 0.00 0.00 4.52
2603 3067 6.028146 TGCATTGTGAAGCTTTGAACATAT 57.972 33.333 0.00 1.19 0.00 1.78
2607 3071 5.464389 AGAATTGCATTGTGAAGCTTTGAAC 59.536 36.000 0.00 0.40 0.00 3.18
2635 3099 9.337396 ACGATCACAAATTATGTATGGTGTAAT 57.663 29.630 0.00 0.00 41.46 1.89
2639 3103 8.587952 TCTACGATCACAAATTATGTATGGTG 57.412 34.615 0.00 0.00 41.46 4.17
2643 3107 8.721478 GGCATTCTACGATCACAAATTATGTAT 58.279 33.333 0.00 0.00 41.46 2.29
2654 3118 7.072030 GTGAAATAATGGCATTCTACGATCAC 58.928 38.462 17.41 17.48 0.00 3.06
2661 3125 8.805175 CCATAATGGTGAAATAATGGCATTCTA 58.195 33.333 17.41 0.00 31.35 2.10
2736 3200 4.834496 ACCATGGTCATTGACAACTTGAAT 59.166 37.500 13.00 1.25 33.68 2.57
2741 3205 2.038426 TCGACCATGGTCATTGACAACT 59.962 45.455 37.42 4.16 44.77 3.16
2813 3277 4.691216 GCCTTCTTCAGAACGACATAGTTT 59.309 41.667 0.00 0.00 34.00 2.66
2822 3286 2.670401 GTTGTGCCTTCTTCAGAACG 57.330 50.000 0.00 0.00 30.05 3.95
2876 3340 4.062293 TGTGACTAACCATGGAGTTTTCG 58.938 43.478 21.47 0.40 0.00 3.46
2878 3342 4.695455 CGATGTGACTAACCATGGAGTTTT 59.305 41.667 21.47 4.43 0.00 2.43
2924 3388 1.971167 GACATCAACGGGCAAGGCA 60.971 57.895 0.00 0.00 0.00 4.75
2943 3407 2.025156 GCCGAATGCATTGGCGAG 59.975 61.111 26.33 15.92 45.35 5.03
2956 3420 2.302260 CTTCTGTCCTAGAGATGCCGA 58.698 52.381 0.00 0.00 36.61 5.54
2981 3445 3.366052 TCCCTGGTAAATTTGAGGCTC 57.634 47.619 7.79 7.79 0.00 4.70
2995 3459 2.373707 CCCAGCTCCTCTTCCCTGG 61.374 68.421 0.00 0.00 43.47 4.45
3020 3484 7.624549 AGATACTTTGACTGAATTTAGGAGCA 58.375 34.615 1.95 0.00 0.00 4.26
3048 3512 7.621796 TCTTCTTCACCCTTAGGAAAACTATC 58.378 38.462 0.00 0.00 36.73 2.08
3065 3529 5.118990 CACTTTGAAGGTGACTCTTCTTCA 58.881 41.667 0.61 6.63 43.25 3.02
3078 3542 6.017400 ACATTAGTTCATGCACTTTGAAGG 57.983 37.500 2.60 0.00 33.95 3.46
3082 3546 6.245115 TCTGACATTAGTTCATGCACTTTG 57.755 37.500 2.60 5.10 0.00 2.77
3084 3548 6.000219 AGTTCTGACATTAGTTCATGCACTT 59.000 36.000 2.60 0.00 0.00 3.16
3087 3551 5.582269 GCTAGTTCTGACATTAGTTCATGCA 59.418 40.000 0.00 0.00 0.00 3.96
3094 3558 5.658634 TCCATGAGCTAGTTCTGACATTAGT 59.341 40.000 8.15 0.00 0.00 2.24
3119 3583 9.507329 ACACACTCACTGATGTCTTTATTTTAT 57.493 29.630 0.00 0.00 0.00 1.40
3129 3593 5.127693 AGTTCTACACACTCACTGATGTC 57.872 43.478 0.00 0.00 0.00 3.06
3136 3600 6.604735 AACATCAAAGTTCTACACACTCAC 57.395 37.500 0.00 0.00 0.00 3.51
3257 3721 6.726490 AGATGAAGAATTGGCTAATGCAAT 57.274 33.333 3.28 0.00 41.91 3.56
3265 3729 5.046014 ACACTGTCTAGATGAAGAATTGGCT 60.046 40.000 0.00 0.00 0.00 4.75
3268 3732 5.640783 TGCACACTGTCTAGATGAAGAATTG 59.359 40.000 0.00 0.00 0.00 2.32
3306 3770 9.015367 ACACTACCACATAGAATAGCAGTATAG 57.985 37.037 0.00 0.00 34.65 1.31
3308 3772 7.841282 ACACTACCACATAGAATAGCAGTAT 57.159 36.000 0.00 0.00 34.65 2.12
3313 3777 6.019801 CGACAAACACTACCACATAGAATAGC 60.020 42.308 0.00 0.00 34.65 2.97
3347 3811 6.408858 ACAGTGAGAATTTGTATTGCTACG 57.591 37.500 0.00 0.00 0.00 3.51
3368 3832 4.502171 CACATTGGTGTTCATTGCTACA 57.498 40.909 0.00 0.00 40.24 2.74
3536 4000 1.209504 ACTCACCCAACGACCATATGG 59.790 52.381 20.68 20.68 42.17 2.74
3570 4035 3.119280 TCATCGTCCATTCGTCTTAAGCA 60.119 43.478 0.00 0.00 0.00 3.91
3585 4050 3.969352 CGCTACAAGTCTACATCATCGTC 59.031 47.826 0.00 0.00 0.00 4.20
3599 4064 1.502231 ACTCAAGTGCACGCTACAAG 58.498 50.000 12.01 7.13 0.00 3.16
3606 4071 1.871080 AGGAAGAACTCAAGTGCACG 58.129 50.000 12.01 0.00 0.00 5.34
3611 4076 5.452356 CCAATTGCAAAGGAAGAACTCAAGT 60.452 40.000 14.36 0.00 0.00 3.16
3639 4104 9.695155 CCTAATTTCCCCATAAAGAAAGACTTA 57.305 33.333 0.00 0.00 37.93 2.24
3642 4107 7.834681 AGACCTAATTTCCCCATAAAGAAAGAC 59.165 37.037 0.00 0.00 35.57 3.01
3655 4120 7.092979 GGATATAGTACCCAGACCTAATTTCCC 60.093 44.444 0.00 0.00 0.00 3.97
3678 4143 4.253685 CGGGCATCGAATATAAGTTGGAT 58.746 43.478 0.00 0.00 42.43 3.41
3679 4144 3.659786 CGGGCATCGAATATAAGTTGGA 58.340 45.455 0.00 0.00 42.43 3.53
3680 4145 2.159627 GCGGGCATCGAATATAAGTTGG 59.840 50.000 2.84 0.00 42.43 3.77
3681 4146 2.159627 GGCGGGCATCGAATATAAGTTG 59.840 50.000 0.00 0.00 42.43 3.16
3682 4147 2.224426 TGGCGGGCATCGAATATAAGTT 60.224 45.455 0.00 0.00 42.43 2.66
3683 4148 1.346395 TGGCGGGCATCGAATATAAGT 59.654 47.619 0.00 0.00 42.43 2.24
3684 4149 1.732259 GTGGCGGGCATCGAATATAAG 59.268 52.381 7.75 0.00 42.43 1.73
3685 4150 1.346395 AGTGGCGGGCATCGAATATAA 59.654 47.619 7.75 0.00 42.43 0.98
3686 4151 0.973632 AGTGGCGGGCATCGAATATA 59.026 50.000 7.75 0.00 42.43 0.86
3692 4157 2.961768 AAAAAGTGGCGGGCATCG 59.038 55.556 7.75 0.00 42.76 3.84
3714 4179 3.519579 CACAAGCACAACCACAATTTCA 58.480 40.909 0.00 0.00 0.00 2.69
3730 4195 3.853831 TGCAATCATTAGTGGCACAAG 57.146 42.857 21.41 6.36 44.16 3.16
3731 4196 4.597404 TTTGCAATCATTAGTGGCACAA 57.403 36.364 21.41 12.27 44.16 3.33
3743 4208 4.903054 TGTGCCCAATTTATTTGCAATCA 58.097 34.783 0.00 0.00 33.73 2.57
3767 4232 4.626081 GTGGCAGACGCACAGGGT 62.626 66.667 0.00 0.00 41.24 4.34
3826 4303 3.424703 CCACAAATGAGACCCACAGAAT 58.575 45.455 0.00 0.00 0.00 2.40
3829 4306 0.883833 GCCACAAATGAGACCCACAG 59.116 55.000 0.00 0.00 0.00 3.66
3834 4311 3.427503 CCGTTATTGCCACAAATGAGACC 60.428 47.826 0.00 0.00 0.00 3.85
3925 4411 0.725686 CGCTGATGTTGGCTCTTCTG 59.274 55.000 0.00 0.00 0.00 3.02
3928 4414 1.002868 AGCGCTGATGTTGGCTCTT 60.003 52.632 10.39 0.00 0.00 2.85
3973 4459 0.112218 ATGGCCAAACTAGGTGTGCA 59.888 50.000 10.96 0.00 0.00 4.57
3986 4472 3.716353 ACATGTATGGTCTAGAATGGCCA 59.284 43.478 8.56 8.56 35.28 5.36
4001 4487 1.908344 TGTGGCAACTGCACATGTAT 58.092 45.000 0.00 0.00 44.36 2.29
4012 4498 0.749649 TGGTGGTTTCATGTGGCAAC 59.250 50.000 0.00 0.00 0.00 4.17
4015 4501 1.285641 CGTGGTGGTTTCATGTGGC 59.714 57.895 0.00 0.00 0.00 5.01
4020 4506 0.753479 TGTTGGCGTGGTGGTTTCAT 60.753 50.000 0.00 0.00 0.00 2.57
4027 4513 3.022287 GACAGTGTTGGCGTGGTG 58.978 61.111 0.00 0.00 0.00 4.17
4037 4523 1.594293 CAAACGGGCTCGACAGTGT 60.594 57.895 15.95 0.00 40.11 3.55
4041 4527 3.545124 ATGGCAAACGGGCTCGACA 62.545 57.895 15.95 3.51 43.83 4.35
4043 4529 2.435938 GATGGCAAACGGGCTCGA 60.436 61.111 15.95 0.00 43.83 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.