Multiple sequence alignment - TraesCS1B01G083700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G083700 chr1B 100.000 2909 0 0 1 2909 67644309 67641401 0.000000e+00 5373.0
1 TraesCS1B01G083700 chr1B 91.638 287 12 5 411 694 67659511 67659234 1.260000e-103 387.0
2 TraesCS1B01G083700 chr1B 75.610 164 32 8 11 169 670253741 670253901 1.120000e-09 75.0
3 TraesCS1B01G083700 chr1D 93.193 1895 92 17 415 2296 47883630 47881760 0.000000e+00 2750.0
4 TraesCS1B01G083700 chr1D 92.053 1661 61 11 415 2053 47936173 47934562 0.000000e+00 2270.0
5 TraesCS1B01G083700 chr1D 96.825 567 17 1 2344 2909 423228945 423228379 0.000000e+00 946.0
6 TraesCS1B01G083700 chr1D 88.889 252 18 3 2046 2296 47934029 47933787 4.710000e-78 302.0
7 TraesCS1B01G083700 chr1A 96.448 901 32 0 1022 1922 47814878 47813978 0.000000e+00 1487.0
8 TraesCS1B01G083700 chr1A 90.127 628 34 8 415 1026 47815751 47815136 0.000000e+00 791.0
9 TraesCS1B01G083700 chr1A 90.332 331 24 4 1966 2296 47813961 47813639 7.450000e-116 427.0
10 TraesCS1B01G083700 chr2B 96.522 575 18 2 2337 2909 362011086 362010512 0.000000e+00 950.0
11 TraesCS1B01G083700 chr2B 100.000 33 0 0 2294 2326 478844859 478844827 8.700000e-06 62.1
12 TraesCS1B01G083700 chr5D 96.825 567 17 1 2344 2909 390757746 390757180 0.000000e+00 946.0
13 TraesCS1B01G083700 chr5D 96.226 53 2 0 2291 2343 473156148 473156200 1.440000e-13 87.9
14 TraesCS1B01G083700 chr2D 96.825 567 16 2 2344 2909 486234376 486234941 0.000000e+00 946.0
15 TraesCS1B01G083700 chr2D 96.825 567 17 1 2344 2909 599821341 599820775 0.000000e+00 946.0
16 TraesCS1B01G083700 chr2D 95.697 581 22 3 2330 2909 505611757 505611179 0.000000e+00 931.0
17 TraesCS1B01G083700 chr2D 89.091 55 5 1 9 62 57268666 57268612 1.870000e-07 67.6
18 TraesCS1B01G083700 chr2D 96.774 31 1 0 2296 2326 9720629 9720599 5.000000e-03 52.8
19 TraesCS1B01G083700 chr4D 96.497 571 18 2 2341 2909 30938053 30937483 0.000000e+00 942.0
20 TraesCS1B01G083700 chr7D 96.497 571 16 3 2341 2909 51477204 51477772 0.000000e+00 941.0
21 TraesCS1B01G083700 chr7D 76.829 164 22 10 10 168 53627995 53628147 8.640000e-11 78.7
22 TraesCS1B01G083700 chr6B 96.497 571 17 3 2341 2909 677526373 677526942 0.000000e+00 941.0
23 TraesCS1B01G083700 chr3A 81.481 162 27 3 11 171 572347525 572347684 2.350000e-26 130.0
24 TraesCS1B01G083700 chr4B 79.290 169 30 4 5 171 419994543 419994708 2.370000e-21 113.0
25 TraesCS1B01G083700 chr7B 89.091 55 5 1 2290 2343 614900494 614900548 1.870000e-07 67.6
26 TraesCS1B01G083700 chr4A 91.489 47 4 0 2296 2342 596539952 596539906 6.730000e-07 65.8
27 TraesCS1B01G083700 chr3D 91.111 45 2 2 2292 2336 524755989 524755947 3.130000e-05 60.2
28 TraesCS1B01G083700 chr3D 87.037 54 3 3 2291 2342 68929064 68929115 1.130000e-04 58.4
29 TraesCS1B01G083700 chr3D 82.258 62 11 0 1565 1626 243324373 243324434 1.000000e-03 54.7
30 TraesCS1B01G083700 chr6A 90.698 43 3 1 2292 2334 608568775 608568734 4.050000e-04 56.5
31 TraesCS1B01G083700 chr2A 96.970 33 1 0 2294 2326 195317466 195317434 4.050000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G083700 chr1B 67641401 67644309 2908 True 5373.000000 5373 100.000000 1 2909 1 chr1B.!!$R1 2908
1 TraesCS1B01G083700 chr1D 47881760 47883630 1870 True 2750.000000 2750 93.193000 415 2296 1 chr1D.!!$R1 1881
2 TraesCS1B01G083700 chr1D 47933787 47936173 2386 True 1286.000000 2270 90.471000 415 2296 2 chr1D.!!$R3 1881
3 TraesCS1B01G083700 chr1D 423228379 423228945 566 True 946.000000 946 96.825000 2344 2909 1 chr1D.!!$R2 565
4 TraesCS1B01G083700 chr1A 47813639 47815751 2112 True 901.666667 1487 92.302333 415 2296 3 chr1A.!!$R1 1881
5 TraesCS1B01G083700 chr2B 362010512 362011086 574 True 950.000000 950 96.522000 2337 2909 1 chr2B.!!$R1 572
6 TraesCS1B01G083700 chr5D 390757180 390757746 566 True 946.000000 946 96.825000 2344 2909 1 chr5D.!!$R1 565
7 TraesCS1B01G083700 chr2D 486234376 486234941 565 False 946.000000 946 96.825000 2344 2909 1 chr2D.!!$F1 565
8 TraesCS1B01G083700 chr2D 599820775 599821341 566 True 946.000000 946 96.825000 2344 2909 1 chr2D.!!$R4 565
9 TraesCS1B01G083700 chr2D 505611179 505611757 578 True 931.000000 931 95.697000 2330 2909 1 chr2D.!!$R3 579
10 TraesCS1B01G083700 chr4D 30937483 30938053 570 True 942.000000 942 96.497000 2341 2909 1 chr4D.!!$R1 568
11 TraesCS1B01G083700 chr7D 51477204 51477772 568 False 941.000000 941 96.497000 2341 2909 1 chr7D.!!$F1 568
12 TraesCS1B01G083700 chr6B 677526373 677526942 569 False 941.000000 941 96.497000 2341 2909 1 chr6B.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.041312 CGTTCAAAACAGTGAGCCGG 60.041 55.0 0.0 0.0 0.00 6.13 F
392 393 0.041400 CGAGCACAAATCGCAACACA 60.041 50.0 0.0 0.0 32.81 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 1527 0.035630 GGATCTGCTGGCTGTTGAGT 60.036 55.0 0.0 0.0 0.0 3.41 R
2273 3182 0.108424 GCTCGATGGACTGAAGCACT 60.108 55.0 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.699895 TTTAACACAGTACATAAGCAGACG 57.300 37.500 0.00 0.00 0.00 4.18
40 41 2.607187 ACACAGTACATAAGCAGACGC 58.393 47.619 0.00 0.00 38.99 5.19
54 55 4.694012 GCAGACGCTTATACATACACAC 57.306 45.455 0.00 0.00 34.30 3.82
55 56 4.109766 GCAGACGCTTATACATACACACA 58.890 43.478 0.00 0.00 34.30 3.72
56 57 4.745125 GCAGACGCTTATACATACACACAT 59.255 41.667 0.00 0.00 34.30 3.21
57 58 5.918576 GCAGACGCTTATACATACACACATA 59.081 40.000 0.00 0.00 34.30 2.29
58 59 6.129168 GCAGACGCTTATACATACACACATAC 60.129 42.308 0.00 0.00 34.30 2.39
59 60 6.915843 CAGACGCTTATACATACACACATACA 59.084 38.462 0.00 0.00 0.00 2.29
60 61 6.916387 AGACGCTTATACATACACACATACAC 59.084 38.462 0.00 0.00 0.00 2.90
61 62 6.802608 ACGCTTATACATACACACATACACT 58.197 36.000 0.00 0.00 0.00 3.55
62 63 7.262772 ACGCTTATACATACACACATACACTT 58.737 34.615 0.00 0.00 0.00 3.16
63 64 8.407832 ACGCTTATACATACACACATACACTTA 58.592 33.333 0.00 0.00 0.00 2.24
64 65 8.688184 CGCTTATACATACACACATACACTTAC 58.312 37.037 0.00 0.00 0.00 2.34
65 66 8.688184 GCTTATACATACACACATACACTTACG 58.312 37.037 0.00 0.00 0.00 3.18
66 67 9.726232 CTTATACATACACACATACACTTACGT 57.274 33.333 0.00 0.00 0.00 3.57
67 68 9.720667 TTATACATACACACATACACTTACGTC 57.279 33.333 0.00 0.00 0.00 4.34
68 69 6.263516 ACATACACACATACACTTACGTCT 57.736 37.500 0.00 0.00 0.00 4.18
69 70 7.381766 ACATACACACATACACTTACGTCTA 57.618 36.000 0.00 0.00 0.00 2.59
70 71 7.993101 ACATACACACATACACTTACGTCTAT 58.007 34.615 0.00 0.00 0.00 1.98
71 72 9.112725 ACATACACACATACACTTACGTCTATA 57.887 33.333 0.00 0.00 0.00 1.31
72 73 9.940166 CATACACACATACACTTACGTCTATAA 57.060 33.333 0.00 0.00 0.00 0.98
74 75 8.679288 ACACACATACACTTACGTCTATAAAC 57.321 34.615 0.00 0.00 0.00 2.01
75 76 8.298854 ACACACATACACTTACGTCTATAAACA 58.701 33.333 0.00 0.00 0.00 2.83
76 77 8.581263 CACACATACACTTACGTCTATAAACAC 58.419 37.037 0.00 0.00 0.00 3.32
77 78 8.298854 ACACATACACTTACGTCTATAAACACA 58.701 33.333 0.00 0.00 0.00 3.72
78 79 9.297586 CACATACACTTACGTCTATAAACACAT 57.702 33.333 0.00 0.00 0.00 3.21
79 80 9.297586 ACATACACTTACGTCTATAAACACATG 57.702 33.333 0.00 0.00 0.00 3.21
80 81 6.642683 ACACTTACGTCTATAAACACATGC 57.357 37.500 0.00 0.00 0.00 4.06
81 82 6.160684 ACACTTACGTCTATAAACACATGCA 58.839 36.000 0.00 0.00 0.00 3.96
82 83 6.090358 ACACTTACGTCTATAAACACATGCAC 59.910 38.462 0.00 0.00 0.00 4.57
83 84 6.090223 CACTTACGTCTATAAACACATGCACA 59.910 38.462 0.00 0.00 0.00 4.57
84 85 4.921470 ACGTCTATAAACACATGCACAC 57.079 40.909 0.00 0.00 0.00 3.82
85 86 4.311606 ACGTCTATAAACACATGCACACA 58.688 39.130 0.00 0.00 0.00 3.72
86 87 4.151689 ACGTCTATAAACACATGCACACAC 59.848 41.667 0.00 0.00 0.00 3.82
87 88 4.151512 CGTCTATAAACACATGCACACACA 59.848 41.667 0.00 0.00 0.00 3.72
88 89 5.333721 CGTCTATAAACACATGCACACACAA 60.334 40.000 0.00 0.00 0.00 3.33
89 90 5.851177 GTCTATAAACACATGCACACACAAC 59.149 40.000 0.00 0.00 0.00 3.32
90 91 2.292103 AAACACATGCACACACAACC 57.708 45.000 0.00 0.00 0.00 3.77
91 92 1.473258 AACACATGCACACACAACCT 58.527 45.000 0.00 0.00 0.00 3.50
92 93 2.340210 ACACATGCACACACAACCTA 57.660 45.000 0.00 0.00 0.00 3.08
93 94 1.946768 ACACATGCACACACAACCTAC 59.053 47.619 0.00 0.00 0.00 3.18
94 95 1.266718 CACATGCACACACAACCTACC 59.733 52.381 0.00 0.00 0.00 3.18
95 96 1.142870 ACATGCACACACAACCTACCT 59.857 47.619 0.00 0.00 0.00 3.08
96 97 1.806542 CATGCACACACAACCTACCTC 59.193 52.381 0.00 0.00 0.00 3.85
97 98 1.128200 TGCACACACAACCTACCTCT 58.872 50.000 0.00 0.00 0.00 3.69
98 99 2.321719 TGCACACACAACCTACCTCTA 58.678 47.619 0.00 0.00 0.00 2.43
99 100 2.903784 TGCACACACAACCTACCTCTAT 59.096 45.455 0.00 0.00 0.00 1.98
100 101 3.262420 GCACACACAACCTACCTCTATG 58.738 50.000 0.00 0.00 0.00 2.23
101 102 3.056107 GCACACACAACCTACCTCTATGA 60.056 47.826 0.00 0.00 0.00 2.15
102 103 4.748892 CACACACAACCTACCTCTATGAG 58.251 47.826 0.00 0.00 0.00 2.90
103 104 3.195825 ACACACAACCTACCTCTATGAGC 59.804 47.826 0.00 0.00 0.00 4.26
104 105 3.195610 CACACAACCTACCTCTATGAGCA 59.804 47.826 0.00 0.00 0.00 4.26
105 106 3.195825 ACACAACCTACCTCTATGAGCAC 59.804 47.826 0.00 0.00 0.00 4.40
106 107 2.427453 ACAACCTACCTCTATGAGCACG 59.573 50.000 0.00 0.00 0.00 5.34
107 108 2.427453 CAACCTACCTCTATGAGCACGT 59.573 50.000 0.00 0.00 0.00 4.49
108 109 2.736347 ACCTACCTCTATGAGCACGTT 58.264 47.619 0.00 0.00 0.00 3.99
109 110 2.688958 ACCTACCTCTATGAGCACGTTC 59.311 50.000 0.00 0.00 0.00 3.95
110 111 2.688446 CCTACCTCTATGAGCACGTTCA 59.312 50.000 0.00 0.00 0.00 3.18
111 112 3.130516 CCTACCTCTATGAGCACGTTCAA 59.869 47.826 0.00 0.00 0.00 2.69
112 113 3.678056 ACCTCTATGAGCACGTTCAAA 57.322 42.857 0.00 0.00 0.00 2.69
113 114 4.002906 ACCTCTATGAGCACGTTCAAAA 57.997 40.909 0.00 0.00 0.00 2.44
114 115 3.746492 ACCTCTATGAGCACGTTCAAAAC 59.254 43.478 0.00 0.00 0.00 2.43
115 116 3.745975 CCTCTATGAGCACGTTCAAAACA 59.254 43.478 0.00 0.00 0.00 2.83
116 117 4.143030 CCTCTATGAGCACGTTCAAAACAG 60.143 45.833 0.00 0.00 0.00 3.16
117 118 4.377021 TCTATGAGCACGTTCAAAACAGT 58.623 39.130 0.00 0.00 0.00 3.55
118 119 2.823196 TGAGCACGTTCAAAACAGTG 57.177 45.000 0.00 9.08 38.24 3.66
119 120 2.351455 TGAGCACGTTCAAAACAGTGA 58.649 42.857 14.45 0.00 37.78 3.41
120 121 2.351418 TGAGCACGTTCAAAACAGTGAG 59.649 45.455 14.45 0.00 37.78 3.51
121 122 1.064060 AGCACGTTCAAAACAGTGAGC 59.936 47.619 14.45 0.00 37.78 4.26
122 123 1.859998 GCACGTTCAAAACAGTGAGCC 60.860 52.381 14.45 0.45 37.78 4.70
123 124 0.655733 ACGTTCAAAACAGTGAGCCG 59.344 50.000 0.00 0.00 32.87 5.52
124 125 0.041312 CGTTCAAAACAGTGAGCCGG 60.041 55.000 0.00 0.00 0.00 6.13
125 126 0.317854 GTTCAAAACAGTGAGCCGGC 60.318 55.000 21.89 21.89 0.00 6.13
126 127 0.749818 TTCAAAACAGTGAGCCGGCA 60.750 50.000 31.54 5.56 0.00 5.69
127 128 1.008538 CAAAACAGTGAGCCGGCAC 60.009 57.895 31.54 24.60 39.05 5.01
128 129 1.453015 AAAACAGTGAGCCGGCACA 60.453 52.632 31.54 27.37 41.19 4.57
129 130 0.823356 AAAACAGTGAGCCGGCACAT 60.823 50.000 29.26 15.29 41.19 3.21
130 131 1.237285 AAACAGTGAGCCGGCACATC 61.237 55.000 29.26 21.06 41.19 3.06
131 132 2.046988 CAGTGAGCCGGCACATCA 60.047 61.111 29.26 20.79 41.19 3.07
132 133 1.450848 CAGTGAGCCGGCACATCAT 60.451 57.895 29.26 15.61 41.19 2.45
133 134 1.028330 CAGTGAGCCGGCACATCATT 61.028 55.000 29.26 17.34 41.19 2.57
134 135 0.322816 AGTGAGCCGGCACATCATTT 60.323 50.000 29.26 13.03 41.19 2.32
135 136 0.527565 GTGAGCCGGCACATCATTTT 59.472 50.000 29.26 3.92 38.63 1.82
136 137 0.527113 TGAGCCGGCACATCATTTTG 59.473 50.000 31.54 0.00 0.00 2.44
137 138 0.810648 GAGCCGGCACATCATTTTGA 59.189 50.000 31.54 0.00 0.00 2.69
138 139 0.813184 AGCCGGCACATCATTTTGAG 59.187 50.000 31.54 0.00 0.00 3.02
139 140 0.810648 GCCGGCACATCATTTTGAGA 59.189 50.000 24.80 0.00 0.00 3.27
140 141 1.406539 GCCGGCACATCATTTTGAGAT 59.593 47.619 24.80 0.00 0.00 2.75
141 142 2.159198 GCCGGCACATCATTTTGAGATT 60.159 45.455 24.80 0.00 0.00 2.40
142 143 3.441163 CCGGCACATCATTTTGAGATTG 58.559 45.455 0.00 0.00 0.00 2.67
143 144 3.129113 CCGGCACATCATTTTGAGATTGA 59.871 43.478 0.00 0.00 0.00 2.57
144 145 4.202080 CCGGCACATCATTTTGAGATTGAT 60.202 41.667 0.00 0.00 0.00 2.57
145 146 5.008911 CCGGCACATCATTTTGAGATTGATA 59.991 40.000 0.00 0.00 29.59 2.15
146 147 6.459985 CCGGCACATCATTTTGAGATTGATAA 60.460 38.462 0.00 0.00 29.59 1.75
147 148 6.974048 CGGCACATCATTTTGAGATTGATAAA 59.026 34.615 0.00 0.00 29.59 1.40
148 149 7.488792 CGGCACATCATTTTGAGATTGATAAAA 59.511 33.333 0.00 0.00 29.59 1.52
149 150 9.321562 GGCACATCATTTTGAGATTGATAAAAT 57.678 29.630 0.00 0.00 35.14 1.82
160 161 9.816354 TTGAGATTGATAAAATCGACATAGACA 57.184 29.630 0.00 0.00 0.00 3.41
161 162 9.249457 TGAGATTGATAAAATCGACATAGACAC 57.751 33.333 0.00 0.00 0.00 3.67
162 163 9.249457 GAGATTGATAAAATCGACATAGACACA 57.751 33.333 0.00 0.00 0.00 3.72
163 164 9.770097 AGATTGATAAAATCGACATAGACACAT 57.230 29.630 0.00 0.00 0.00 3.21
166 167 8.061125 TGATAAAATCGACATAGACACATTCG 57.939 34.615 0.00 0.00 0.00 3.34
167 168 7.704899 TGATAAAATCGACATAGACACATTCGT 59.295 33.333 0.00 0.00 0.00 3.85
168 169 9.177304 GATAAAATCGACATAGACACATTCGTA 57.823 33.333 0.00 0.00 0.00 3.43
169 170 7.451281 AAAATCGACATAGACACATTCGTAG 57.549 36.000 0.00 0.00 0.00 3.51
170 171 5.752892 ATCGACATAGACACATTCGTAGT 57.247 39.130 0.00 0.00 0.00 2.73
171 172 6.856135 ATCGACATAGACACATTCGTAGTA 57.144 37.500 0.00 0.00 0.00 1.82
172 173 6.040962 TCGACATAGACACATTCGTAGTAC 57.959 41.667 0.00 0.00 0.00 2.73
173 174 5.581874 TCGACATAGACACATTCGTAGTACA 59.418 40.000 0.38 0.00 0.00 2.90
174 175 6.092533 TCGACATAGACACATTCGTAGTACAA 59.907 38.462 0.38 0.00 0.00 2.41
175 176 6.744082 CGACATAGACACATTCGTAGTACAAA 59.256 38.462 0.38 0.00 0.00 2.83
176 177 7.271868 CGACATAGACACATTCGTAGTACAAAA 59.728 37.037 0.38 0.00 0.00 2.44
177 178 8.236084 ACATAGACACATTCGTAGTACAAAAC 57.764 34.615 0.38 0.00 0.00 2.43
178 179 5.817616 AGACACATTCGTAGTACAAAACG 57.182 39.130 8.59 8.59 40.40 3.60
179 180 4.682860 AGACACATTCGTAGTACAAAACGG 59.317 41.667 13.26 3.33 39.52 4.44
180 181 4.370917 ACACATTCGTAGTACAAAACGGT 58.629 39.130 13.26 3.82 39.52 4.83
181 182 4.209703 ACACATTCGTAGTACAAAACGGTG 59.790 41.667 13.26 14.29 39.52 4.94
182 183 4.445052 CACATTCGTAGTACAAAACGGTGA 59.555 41.667 18.55 8.11 39.52 4.02
183 184 5.049167 ACATTCGTAGTACAAAACGGTGAA 58.951 37.500 18.55 8.46 39.52 3.18
184 185 5.176223 ACATTCGTAGTACAAAACGGTGAAG 59.824 40.000 18.55 8.94 39.52 3.02
185 186 3.052036 TCGTAGTACAAAACGGTGAAGC 58.948 45.455 13.26 0.00 39.52 3.86
186 187 2.156310 CGTAGTACAAAACGGTGAAGCC 59.844 50.000 0.38 0.00 35.51 4.35
187 188 2.335316 AGTACAAAACGGTGAAGCCA 57.665 45.000 0.00 0.00 36.97 4.75
188 189 1.944709 AGTACAAAACGGTGAAGCCAC 59.055 47.619 0.00 0.00 42.46 5.01
189 190 0.938713 TACAAAACGGTGAAGCCACG 59.061 50.000 0.00 0.00 44.09 4.94
190 191 1.027792 ACAAAACGGTGAAGCCACGT 61.028 50.000 0.00 0.00 44.09 4.49
191 192 0.938713 CAAAACGGTGAAGCCACGTA 59.061 50.000 0.00 0.00 44.09 3.57
192 193 1.533731 CAAAACGGTGAAGCCACGTAT 59.466 47.619 0.00 0.00 44.09 3.06
193 194 1.153353 AAACGGTGAAGCCACGTATG 58.847 50.000 0.00 0.00 44.09 2.39
202 203 2.744318 CCACGTATGGCCACGCAA 60.744 61.111 8.16 0.00 45.77 4.85
203 204 2.478746 CACGTATGGCCACGCAAC 59.521 61.111 8.16 3.10 45.77 4.17
204 205 2.031314 ACGTATGGCCACGCAACA 59.969 55.556 8.16 0.00 45.77 3.33
205 206 1.376683 ACGTATGGCCACGCAACAT 60.377 52.632 8.16 0.00 45.77 2.71
206 207 0.108089 ACGTATGGCCACGCAACATA 60.108 50.000 8.16 0.00 45.77 2.29
207 208 0.581529 CGTATGGCCACGCAACATAG 59.418 55.000 8.16 0.00 34.78 2.23
208 209 0.944386 GTATGGCCACGCAACATAGG 59.056 55.000 8.16 0.00 0.00 2.57
209 210 0.544223 TATGGCCACGCAACATAGGT 59.456 50.000 8.16 0.00 0.00 3.08
210 211 0.544223 ATGGCCACGCAACATAGGTA 59.456 50.000 8.16 0.00 0.00 3.08
211 212 0.107897 TGGCCACGCAACATAGGTAG 60.108 55.000 0.00 0.00 0.00 3.18
212 213 0.107848 GGCCACGCAACATAGGTAGT 60.108 55.000 0.00 0.00 0.00 2.73
213 214 1.677820 GGCCACGCAACATAGGTAGTT 60.678 52.381 0.00 0.00 0.00 2.24
214 215 1.664151 GCCACGCAACATAGGTAGTTC 59.336 52.381 0.00 0.00 0.00 3.01
215 216 2.677037 GCCACGCAACATAGGTAGTTCT 60.677 50.000 0.00 0.00 0.00 3.01
216 217 2.930040 CCACGCAACATAGGTAGTTCTG 59.070 50.000 0.00 0.00 0.00 3.02
217 218 3.368013 CCACGCAACATAGGTAGTTCTGA 60.368 47.826 0.00 0.00 0.00 3.27
218 219 4.242475 CACGCAACATAGGTAGTTCTGAA 58.758 43.478 0.00 0.00 0.00 3.02
219 220 4.091509 CACGCAACATAGGTAGTTCTGAAC 59.908 45.833 12.54 12.54 0.00 3.18
220 221 3.303495 CGCAACATAGGTAGTTCTGAACG 59.697 47.826 14.35 1.86 36.23 3.95
221 222 4.491676 GCAACATAGGTAGTTCTGAACGA 58.508 43.478 14.35 7.07 36.23 3.85
222 223 4.326548 GCAACATAGGTAGTTCTGAACGAC 59.673 45.833 20.98 20.98 36.44 4.34
223 224 4.352600 ACATAGGTAGTTCTGAACGACG 57.647 45.455 21.85 13.46 37.81 5.12
224 225 4.005650 ACATAGGTAGTTCTGAACGACGA 58.994 43.478 21.85 15.12 37.81 4.20
225 226 4.094590 ACATAGGTAGTTCTGAACGACGAG 59.905 45.833 21.85 15.25 37.81 4.18
226 227 1.811359 AGGTAGTTCTGAACGACGAGG 59.189 52.381 21.85 0.00 37.81 4.63
227 228 1.538950 GGTAGTTCTGAACGACGAGGT 59.461 52.381 21.85 4.94 37.81 3.85
228 229 2.744202 GGTAGTTCTGAACGACGAGGTA 59.256 50.000 21.85 4.09 37.81 3.08
229 230 3.189287 GGTAGTTCTGAACGACGAGGTAA 59.811 47.826 21.85 0.00 37.81 2.85
230 231 3.996150 AGTTCTGAACGACGAGGTAAA 57.004 42.857 14.35 0.00 36.23 2.01
231 232 3.636381 AGTTCTGAACGACGAGGTAAAC 58.364 45.455 14.35 0.58 36.23 2.01
232 233 3.067180 AGTTCTGAACGACGAGGTAAACA 59.933 43.478 14.35 0.00 36.23 2.83
233 234 3.928727 TCTGAACGACGAGGTAAACAT 57.071 42.857 0.00 0.00 0.00 2.71
234 235 5.048504 AGTTCTGAACGACGAGGTAAACATA 60.049 40.000 14.35 0.00 36.23 2.29
235 236 5.375417 TCTGAACGACGAGGTAAACATAA 57.625 39.130 0.00 0.00 0.00 1.90
236 237 5.156355 TCTGAACGACGAGGTAAACATAAC 58.844 41.667 0.00 0.00 0.00 1.89
237 238 5.048504 TCTGAACGACGAGGTAAACATAACT 60.049 40.000 0.00 0.00 0.00 2.24
238 239 6.149308 TCTGAACGACGAGGTAAACATAACTA 59.851 38.462 0.00 0.00 0.00 2.24
239 240 6.317088 TGAACGACGAGGTAAACATAACTAG 58.683 40.000 0.00 0.00 0.00 2.57
240 241 5.240713 ACGACGAGGTAAACATAACTAGG 57.759 43.478 0.00 0.00 0.00 3.02
241 242 4.040376 CGACGAGGTAAACATAACTAGGC 58.960 47.826 0.00 0.00 0.00 3.93
242 243 4.439153 CGACGAGGTAAACATAACTAGGCA 60.439 45.833 0.00 0.00 0.00 4.75
243 244 5.410355 ACGAGGTAAACATAACTAGGCAA 57.590 39.130 0.00 0.00 0.00 4.52
244 245 5.173664 ACGAGGTAAACATAACTAGGCAAC 58.826 41.667 0.00 0.00 0.00 4.17
245 246 5.172934 CGAGGTAAACATAACTAGGCAACA 58.827 41.667 0.00 0.00 41.41 3.33
246 247 5.640357 CGAGGTAAACATAACTAGGCAACAA 59.360 40.000 0.00 0.00 41.41 2.83
247 248 6.148150 CGAGGTAAACATAACTAGGCAACAAA 59.852 38.462 0.00 0.00 41.41 2.83
248 249 7.308109 CGAGGTAAACATAACTAGGCAACAAAA 60.308 37.037 0.00 0.00 41.41 2.44
249 250 7.654568 AGGTAAACATAACTAGGCAACAAAAC 58.345 34.615 0.00 0.00 41.41 2.43
250 251 6.579666 GGTAAACATAACTAGGCAACAAAACG 59.420 38.462 0.00 0.00 41.41 3.60
251 252 4.759516 ACATAACTAGGCAACAAAACGG 57.240 40.909 0.00 0.00 41.41 4.44
252 253 4.391155 ACATAACTAGGCAACAAAACGGA 58.609 39.130 0.00 0.00 41.41 4.69
253 254 4.822896 ACATAACTAGGCAACAAAACGGAA 59.177 37.500 0.00 0.00 41.41 4.30
254 255 5.299782 ACATAACTAGGCAACAAAACGGAAA 59.700 36.000 0.00 0.00 41.41 3.13
255 256 4.722361 AACTAGGCAACAAAACGGAAAA 57.278 36.364 0.00 0.00 41.41 2.29
256 257 4.722361 ACTAGGCAACAAAACGGAAAAA 57.278 36.364 0.00 0.00 41.41 1.94
257 258 5.270893 ACTAGGCAACAAAACGGAAAAAT 57.729 34.783 0.00 0.00 41.41 1.82
258 259 6.394025 ACTAGGCAACAAAACGGAAAAATA 57.606 33.333 0.00 0.00 41.41 1.40
259 260 6.807789 ACTAGGCAACAAAACGGAAAAATAA 58.192 32.000 0.00 0.00 41.41 1.40
260 261 7.266400 ACTAGGCAACAAAACGGAAAAATAAA 58.734 30.769 0.00 0.00 41.41 1.40
261 262 6.352682 AGGCAACAAAACGGAAAAATAAAC 57.647 33.333 0.00 0.00 41.41 2.01
262 263 6.110033 AGGCAACAAAACGGAAAAATAAACT 58.890 32.000 0.00 0.00 41.41 2.66
263 264 7.266400 AGGCAACAAAACGGAAAAATAAACTA 58.734 30.769 0.00 0.00 41.41 2.24
264 265 7.223193 AGGCAACAAAACGGAAAAATAAACTAC 59.777 33.333 0.00 0.00 41.41 2.73
265 266 7.010275 GGCAACAAAACGGAAAAATAAACTACA 59.990 33.333 0.00 0.00 0.00 2.74
266 267 8.381387 GCAACAAAACGGAAAAATAAACTACAA 58.619 29.630 0.00 0.00 0.00 2.41
267 268 9.894439 CAACAAAACGGAAAAATAAACTACAAG 57.106 29.630 0.00 0.00 0.00 3.16
268 269 9.642327 AACAAAACGGAAAAATAAACTACAAGT 57.358 25.926 0.00 0.00 0.00 3.16
269 270 9.642327 ACAAAACGGAAAAATAAACTACAAGTT 57.358 25.926 0.00 0.00 40.80 2.66
273 274 9.726232 AACGGAAAAATAAACTACAAGTTCTTC 57.274 29.630 0.00 0.00 37.47 2.87
274 275 9.117183 ACGGAAAAATAAACTACAAGTTCTTCT 57.883 29.630 0.00 0.00 37.47 2.85
275 276 9.382244 CGGAAAAATAAACTACAAGTTCTTCTG 57.618 33.333 0.00 0.00 37.47 3.02
287 288 1.724082 GTTCTTCTGAACGAGCAGAGC 59.276 52.381 10.77 0.00 44.93 4.09
288 289 0.244994 TCTTCTGAACGAGCAGAGCC 59.755 55.000 10.77 0.00 44.93 4.70
289 290 0.246086 CTTCTGAACGAGCAGAGCCT 59.754 55.000 10.77 0.00 44.93 4.58
290 291 0.244994 TTCTGAACGAGCAGAGCCTC 59.755 55.000 10.77 0.00 44.93 4.70
291 292 1.153667 CTGAACGAGCAGAGCCTCC 60.154 63.158 3.73 0.00 38.14 4.30
292 293 1.603236 CTGAACGAGCAGAGCCTCCT 61.603 60.000 3.73 0.00 38.14 3.69
293 294 1.140804 GAACGAGCAGAGCCTCCTC 59.859 63.158 0.00 0.00 38.42 3.71
294 295 2.291457 GAACGAGCAGAGCCTCCTCC 62.291 65.000 0.00 0.00 38.96 4.30
295 296 2.441901 CGAGCAGAGCCTCCTCCT 60.442 66.667 0.00 0.00 38.96 3.69
296 297 2.784356 CGAGCAGAGCCTCCTCCTG 61.784 68.421 0.00 0.00 38.96 3.86
297 298 1.381056 GAGCAGAGCCTCCTCCTGA 60.381 63.158 0.00 0.00 38.96 3.86
298 299 0.975040 GAGCAGAGCCTCCTCCTGAA 60.975 60.000 0.00 0.00 38.96 3.02
299 300 0.326427 AGCAGAGCCTCCTCCTGAAT 60.326 55.000 0.00 0.00 38.96 2.57
300 301 1.062581 AGCAGAGCCTCCTCCTGAATA 60.063 52.381 0.00 0.00 38.96 1.75
301 302 1.344114 GCAGAGCCTCCTCCTGAATAG 59.656 57.143 0.00 0.00 38.96 1.73
302 303 2.956132 CAGAGCCTCCTCCTGAATAGA 58.044 52.381 0.00 0.00 38.96 1.98
303 304 3.303938 CAGAGCCTCCTCCTGAATAGAA 58.696 50.000 0.00 0.00 38.96 2.10
304 305 3.321682 CAGAGCCTCCTCCTGAATAGAAG 59.678 52.174 0.00 0.00 38.96 2.85
305 306 2.037121 GAGCCTCCTCCTGAATAGAAGC 59.963 54.545 0.00 0.00 31.68 3.86
306 307 1.765314 GCCTCCTCCTGAATAGAAGCA 59.235 52.381 0.00 0.00 0.00 3.91
307 308 2.171448 GCCTCCTCCTGAATAGAAGCAA 59.829 50.000 0.00 0.00 0.00 3.91
308 309 3.743899 GCCTCCTCCTGAATAGAAGCAAG 60.744 52.174 0.00 0.00 0.00 4.01
309 310 3.708631 CCTCCTCCTGAATAGAAGCAAGA 59.291 47.826 0.00 0.00 0.00 3.02
310 311 4.442753 CCTCCTCCTGAATAGAAGCAAGAC 60.443 50.000 0.00 0.00 0.00 3.01
311 312 4.096681 TCCTCCTGAATAGAAGCAAGACA 58.903 43.478 0.00 0.00 0.00 3.41
312 313 4.532126 TCCTCCTGAATAGAAGCAAGACAA 59.468 41.667 0.00 0.00 0.00 3.18
313 314 4.633565 CCTCCTGAATAGAAGCAAGACAAC 59.366 45.833 0.00 0.00 0.00 3.32
314 315 5.227569 TCCTGAATAGAAGCAAGACAACA 57.772 39.130 0.00 0.00 0.00 3.33
315 316 5.809001 TCCTGAATAGAAGCAAGACAACAT 58.191 37.500 0.00 0.00 0.00 2.71
316 317 6.946340 TCCTGAATAGAAGCAAGACAACATA 58.054 36.000 0.00 0.00 0.00 2.29
317 318 7.044181 TCCTGAATAGAAGCAAGACAACATAG 58.956 38.462 0.00 0.00 0.00 2.23
318 319 6.238320 CCTGAATAGAAGCAAGACAACATAGC 60.238 42.308 0.00 0.00 0.00 2.97
319 320 5.586243 TGAATAGAAGCAAGACAACATAGCC 59.414 40.000 0.00 0.00 0.00 3.93
320 321 3.710209 AGAAGCAAGACAACATAGCCT 57.290 42.857 0.00 0.00 0.00 4.58
321 322 4.826274 AGAAGCAAGACAACATAGCCTA 57.174 40.909 0.00 0.00 0.00 3.93
322 323 4.764172 AGAAGCAAGACAACATAGCCTAG 58.236 43.478 0.00 0.00 0.00 3.02
323 324 2.911484 AGCAAGACAACATAGCCTAGC 58.089 47.619 0.00 0.00 0.00 3.42
324 325 2.503356 AGCAAGACAACATAGCCTAGCT 59.497 45.455 0.00 0.00 43.41 3.32
325 326 3.706594 AGCAAGACAACATAGCCTAGCTA 59.293 43.478 0.00 0.00 45.55 3.32
326 327 4.054671 GCAAGACAACATAGCCTAGCTAG 58.945 47.826 14.20 14.20 44.66 3.42
327 328 4.054671 CAAGACAACATAGCCTAGCTAGC 58.945 47.826 15.74 6.62 44.66 3.42
328 329 3.571590 AGACAACATAGCCTAGCTAGCT 58.428 45.455 23.12 23.12 44.66 3.32
329 330 3.320541 AGACAACATAGCCTAGCTAGCTG 59.679 47.826 27.68 16.13 44.66 4.24
330 331 2.224161 ACAACATAGCCTAGCTAGCTGC 60.224 50.000 27.68 21.95 44.66 5.25
342 343 2.643551 GCTAGCTGCTTACCAAATCCA 58.356 47.619 7.79 0.00 38.95 3.41
343 344 3.016736 GCTAGCTGCTTACCAAATCCAA 58.983 45.455 7.79 0.00 38.95 3.53
344 345 3.181496 GCTAGCTGCTTACCAAATCCAAC 60.181 47.826 7.79 0.00 38.95 3.77
345 346 1.812571 AGCTGCTTACCAAATCCAACG 59.187 47.619 0.00 0.00 0.00 4.10
346 347 1.539827 GCTGCTTACCAAATCCAACGT 59.460 47.619 0.00 0.00 0.00 3.99
347 348 2.745281 GCTGCTTACCAAATCCAACGTA 59.255 45.455 0.00 0.00 0.00 3.57
348 349 3.181510 GCTGCTTACCAAATCCAACGTAG 60.182 47.826 0.00 0.00 0.00 3.51
349 350 2.745281 TGCTTACCAAATCCAACGTAGC 59.255 45.455 0.00 0.00 0.00 3.58
350 351 3.007635 GCTTACCAAATCCAACGTAGCT 58.992 45.455 0.00 0.00 0.00 3.32
351 352 4.186159 GCTTACCAAATCCAACGTAGCTA 58.814 43.478 0.00 0.00 0.00 3.32
352 353 4.270325 GCTTACCAAATCCAACGTAGCTAG 59.730 45.833 0.00 0.00 0.00 3.42
353 354 2.629051 ACCAAATCCAACGTAGCTAGC 58.371 47.619 6.62 6.62 0.00 3.42
354 355 2.236395 ACCAAATCCAACGTAGCTAGCT 59.764 45.455 23.12 23.12 0.00 3.32
355 356 3.270877 CCAAATCCAACGTAGCTAGCTT 58.729 45.455 24.88 1.07 0.00 3.74
356 357 3.689649 CCAAATCCAACGTAGCTAGCTTT 59.310 43.478 24.88 8.61 0.00 3.51
357 358 4.437390 CCAAATCCAACGTAGCTAGCTTTG 60.437 45.833 24.88 20.28 0.00 2.77
358 359 2.380084 TCCAACGTAGCTAGCTTTGG 57.620 50.000 29.37 29.37 38.48 3.28
359 360 1.621814 TCCAACGTAGCTAGCTTTGGT 59.378 47.619 31.70 21.49 38.32 3.67
360 361 2.038033 TCCAACGTAGCTAGCTTTGGTT 59.962 45.455 31.70 24.72 38.32 3.67
361 362 2.159627 CCAACGTAGCTAGCTTTGGTTG 59.840 50.000 27.87 28.74 33.39 3.77
362 363 2.806244 CAACGTAGCTAGCTTTGGTTGT 59.194 45.455 28.75 16.57 31.21 3.32
363 364 3.947910 ACGTAGCTAGCTTTGGTTGTA 57.052 42.857 24.88 0.00 0.00 2.41
364 365 4.467198 ACGTAGCTAGCTTTGGTTGTAT 57.533 40.909 24.88 0.00 0.00 2.29
365 366 4.430908 ACGTAGCTAGCTTTGGTTGTATC 58.569 43.478 24.88 0.70 0.00 2.24
366 367 4.081862 ACGTAGCTAGCTTTGGTTGTATCA 60.082 41.667 24.88 0.00 0.00 2.15
367 368 4.267928 CGTAGCTAGCTTTGGTTGTATCAC 59.732 45.833 24.88 9.14 0.00 3.06
368 369 3.262420 AGCTAGCTTTGGTTGTATCACG 58.738 45.455 12.68 0.00 0.00 4.35
369 370 2.223044 GCTAGCTTTGGTTGTATCACGC 60.223 50.000 7.70 0.00 0.00 5.34
370 371 0.796312 AGCTTTGGTTGTATCACGCG 59.204 50.000 3.53 3.53 0.00 6.01
371 372 0.793104 GCTTTGGTTGTATCACGCGC 60.793 55.000 5.73 0.00 0.00 6.86
372 373 0.518355 CTTTGGTTGTATCACGCGCG 60.518 55.000 30.96 30.96 0.00 6.86
373 374 2.501607 TTTGGTTGTATCACGCGCGC 62.502 55.000 32.58 23.91 0.00 6.86
391 392 2.699910 CGAGCACAAATCGCAACAC 58.300 52.632 0.00 0.00 32.81 3.32
392 393 0.041400 CGAGCACAAATCGCAACACA 60.041 50.000 0.00 0.00 32.81 3.72
393 394 1.400113 CGAGCACAAATCGCAACACAT 60.400 47.619 0.00 0.00 32.81 3.21
394 395 2.159720 CGAGCACAAATCGCAACACATA 60.160 45.455 0.00 0.00 32.81 2.29
395 396 3.419915 GAGCACAAATCGCAACACATAG 58.580 45.455 0.00 0.00 0.00 2.23
396 397 1.913403 GCACAAATCGCAACACATAGC 59.087 47.619 0.00 0.00 0.00 2.97
397 398 2.518949 CACAAATCGCAACACATAGCC 58.481 47.619 0.00 0.00 0.00 3.93
398 399 1.130373 ACAAATCGCAACACATAGCCG 59.870 47.619 0.00 0.00 0.00 5.52
399 400 1.396648 CAAATCGCAACACATAGCCGA 59.603 47.619 0.00 0.00 0.00 5.54
400 401 1.953559 AATCGCAACACATAGCCGAT 58.046 45.000 0.00 0.00 0.00 4.18
401 402 2.812358 ATCGCAACACATAGCCGATA 57.188 45.000 0.00 0.00 0.00 2.92
402 403 1.847818 TCGCAACACATAGCCGATAC 58.152 50.000 0.00 0.00 0.00 2.24
403 404 1.135333 TCGCAACACATAGCCGATACA 59.865 47.619 0.00 0.00 0.00 2.29
404 405 2.135139 CGCAACACATAGCCGATACAT 58.865 47.619 0.00 0.00 0.00 2.29
405 406 2.096762 CGCAACACATAGCCGATACATG 60.097 50.000 0.00 0.00 0.00 3.21
406 407 2.224079 GCAACACATAGCCGATACATGG 59.776 50.000 0.00 0.00 0.00 3.66
413 414 2.111043 CCGATACATGGCCGCCTT 59.889 61.111 11.61 0.47 0.00 4.35
508 509 4.377708 ACGCAGACAGCATCGCCA 62.378 61.111 0.00 0.00 46.13 5.69
545 549 1.007038 GACGTACCACCAGCAACGA 60.007 57.895 0.23 0.00 38.64 3.85
546 550 1.280206 GACGTACCACCAGCAACGAC 61.280 60.000 0.23 0.00 38.64 4.34
547 551 2.369629 CGTACCACCAGCAACGACG 61.370 63.158 0.00 0.00 37.53 5.12
596 600 2.932855 ATCATGCCTGATCAGACCAG 57.067 50.000 24.62 8.29 37.58 4.00
622 633 1.141234 GACCTACGCAGCTACCACC 59.859 63.158 0.00 0.00 0.00 4.61
623 634 1.601419 GACCTACGCAGCTACCACCA 61.601 60.000 0.00 0.00 0.00 4.17
624 635 1.153628 CCTACGCAGCTACCACCAC 60.154 63.158 0.00 0.00 0.00 4.16
625 636 1.589630 CTACGCAGCTACCACCACA 59.410 57.895 0.00 0.00 0.00 4.17
626 637 0.458543 CTACGCAGCTACCACCACAG 60.459 60.000 0.00 0.00 0.00 3.66
627 638 0.896479 TACGCAGCTACCACCACAGA 60.896 55.000 0.00 0.00 0.00 3.41
628 639 1.446792 CGCAGCTACCACCACAGAG 60.447 63.158 0.00 0.00 0.00 3.35
629 640 1.743252 GCAGCTACCACCACAGAGC 60.743 63.158 0.00 0.00 35.07 4.09
630 641 1.446792 CAGCTACCACCACAGAGCG 60.447 63.158 0.00 0.00 39.96 5.03
674 685 3.439008 GCTACTCGAGCCCTCTCC 58.561 66.667 13.61 0.00 46.41 3.71
675 686 2.197605 GCTACTCGAGCCCTCTCCC 61.198 68.421 13.61 0.00 46.41 4.30
676 687 1.894756 CTACTCGAGCCCTCTCCCG 60.895 68.421 13.61 0.00 35.94 5.14
677 688 3.417167 TACTCGAGCCCTCTCCCGG 62.417 68.421 13.61 0.00 35.94 5.73
684 695 4.806339 CCCTCTCCCGGGCCTTCT 62.806 72.222 18.49 0.00 37.41 2.85
685 696 3.157949 CCTCTCCCGGGCCTTCTC 61.158 72.222 18.49 0.00 0.00 2.87
686 697 3.157949 CTCTCCCGGGCCTTCTCC 61.158 72.222 18.49 0.00 0.00 3.71
687 698 4.798682 TCTCCCGGGCCTTCTCCC 62.799 72.222 18.49 0.00 43.02 4.30
733 780 1.687493 CCCTCTCCCGAGCCTTCTT 60.687 63.158 0.00 0.00 35.90 2.52
734 781 1.681486 CCCTCTCCCGAGCCTTCTTC 61.681 65.000 0.00 0.00 35.90 2.87
735 782 0.686112 CCTCTCCCGAGCCTTCTTCT 60.686 60.000 0.00 0.00 35.90 2.85
948 1025 2.266055 CCCGTCACCTTCAGGCTC 59.734 66.667 0.00 0.00 39.32 4.70
1124 1463 0.110464 GACAAGAAGCTCAAGTGCGC 60.110 55.000 0.00 0.00 38.13 6.09
1461 1800 2.963371 GACGACAACTCCGAGGCT 59.037 61.111 0.00 0.00 0.00 4.58
1470 1809 1.153249 CTCCGAGGCTCGAGTCTCT 60.153 63.158 36.51 21.41 44.21 3.10
1824 2163 1.169661 TTCATGACCGTGGGCACAAC 61.170 55.000 0.00 0.00 0.00 3.32
1839 2178 0.748005 ACAACCACAAGCACGCTTCT 60.748 50.000 0.16 0.00 33.42 2.85
1887 2226 1.737793 CTAACCGAATCTGGCACCAAC 59.262 52.381 0.00 0.00 0.00 3.77
1900 2239 1.369625 CACCAACGTAGATCCCAAGC 58.630 55.000 0.00 0.00 0.00 4.01
1940 2306 2.954989 ACACATGCATGGTTGTTGTACA 59.045 40.909 29.41 0.00 0.00 2.90
1960 2327 9.751542 TTGTACATACAACCCTTAATTTTTGTG 57.248 29.630 0.00 0.00 40.93 3.33
1968 2335 3.745458 CCCTTAATTTTTGTGCGTGCAAT 59.255 39.130 0.00 0.00 0.00 3.56
1972 2339 4.707210 AATTTTTGTGCGTGCAATGTAC 57.293 36.364 0.00 0.00 39.06 2.90
2048 2417 7.727181 AGTATCTGTACCAATCATACACCTTC 58.273 38.462 0.00 0.00 0.00 3.46
2059 2968 8.906867 CCAATCATACACCTTCTGTCATTTATT 58.093 33.333 0.00 0.00 33.91 1.40
2060 2969 9.941664 CAATCATACACCTTCTGTCATTTATTC 57.058 33.333 0.00 0.00 33.91 1.75
2080 2989 4.111375 TCGATTACCTTCTGAGAACTGC 57.889 45.455 0.00 0.00 0.00 4.40
2084 2993 5.006165 CGATTACCTTCTGAGAACTGCATTC 59.994 44.000 0.00 0.00 37.62 2.67
2242 3151 3.565482 GCACTCTTGATCTTTGTTGTGGA 59.435 43.478 0.00 0.00 0.00 4.02
2243 3152 4.555511 GCACTCTTGATCTTTGTTGTGGAC 60.556 45.833 0.00 0.00 0.00 4.02
2244 3153 4.818546 CACTCTTGATCTTTGTTGTGGACT 59.181 41.667 0.00 0.00 0.00 3.85
2245 3154 5.297776 CACTCTTGATCTTTGTTGTGGACTT 59.702 40.000 0.00 0.00 0.00 3.01
2246 3155 5.297776 ACTCTTGATCTTTGTTGTGGACTTG 59.702 40.000 0.00 0.00 0.00 3.16
2247 3156 5.192927 TCTTGATCTTTGTTGTGGACTTGT 58.807 37.500 0.00 0.00 0.00 3.16
2248 3157 4.898829 TGATCTTTGTTGTGGACTTGTG 57.101 40.909 0.00 0.00 0.00 3.33
2249 3158 3.631686 TGATCTTTGTTGTGGACTTGTGG 59.368 43.478 0.00 0.00 0.00 4.17
2273 3182 6.428771 GGTTGCTAGTGACAACTTTTGGTATA 59.571 38.462 10.36 0.00 45.34 1.47
2296 3205 2.159184 TGCTTCAGTCCATCGAGCTTAG 60.159 50.000 0.00 0.00 34.56 2.18
2297 3206 2.099921 GCTTCAGTCCATCGAGCTTAGA 59.900 50.000 0.00 0.00 0.00 2.10
2298 3207 3.795150 GCTTCAGTCCATCGAGCTTAGAG 60.795 52.174 0.00 0.00 0.00 2.43
2299 3208 1.678627 TCAGTCCATCGAGCTTAGAGC 59.321 52.381 0.00 0.00 42.84 4.09
2300 3209 1.406898 CAGTCCATCGAGCTTAGAGCA 59.593 52.381 2.47 0.00 45.56 4.26
2301 3210 2.035704 CAGTCCATCGAGCTTAGAGCAT 59.964 50.000 2.47 0.00 45.56 3.79
2302 3211 2.295909 AGTCCATCGAGCTTAGAGCATC 59.704 50.000 2.47 0.00 45.56 3.91
2313 3222 2.725008 GAGCATCTCTAGCCGCGT 59.275 61.111 4.92 0.00 0.00 6.01
2314 3223 1.371145 GAGCATCTCTAGCCGCGTC 60.371 63.158 4.92 0.00 0.00 5.19
2315 3224 2.355244 GCATCTCTAGCCGCGTCC 60.355 66.667 4.92 0.00 0.00 4.79
2316 3225 2.336809 CATCTCTAGCCGCGTCCC 59.663 66.667 4.92 0.00 0.00 4.46
2317 3226 2.913060 ATCTCTAGCCGCGTCCCC 60.913 66.667 4.92 0.00 0.00 4.81
2318 3227 3.733507 ATCTCTAGCCGCGTCCCCA 62.734 63.158 4.92 0.00 0.00 4.96
2319 3228 3.458163 CTCTAGCCGCGTCCCCAA 61.458 66.667 4.92 0.00 0.00 4.12
2320 3229 3.718210 CTCTAGCCGCGTCCCCAAC 62.718 68.421 4.92 0.00 0.00 3.77
2321 3230 4.077184 CTAGCCGCGTCCCCAACA 62.077 66.667 4.92 0.00 0.00 3.33
2322 3231 4.077184 TAGCCGCGTCCCCAACAG 62.077 66.667 4.92 0.00 0.00 3.16
2327 3236 4.740822 GCGTCCCCAACAGGCCAT 62.741 66.667 5.01 0.00 0.00 4.40
2328 3237 2.438434 CGTCCCCAACAGGCCATC 60.438 66.667 5.01 0.00 0.00 3.51
2329 3238 2.043953 GTCCCCAACAGGCCATCC 60.044 66.667 5.01 0.00 0.00 3.51
2330 3239 3.346734 TCCCCAACAGGCCATCCC 61.347 66.667 5.01 0.00 0.00 3.85
2331 3240 4.463788 CCCCAACAGGCCATCCCC 62.464 72.222 5.01 0.00 0.00 4.81
2332 3241 3.671410 CCCAACAGGCCATCCCCA 61.671 66.667 5.01 0.00 0.00 4.96
2333 3242 2.043652 CCAACAGGCCATCCCCAG 60.044 66.667 5.01 0.00 0.00 4.45
2334 3243 2.043652 CAACAGGCCATCCCCAGG 60.044 66.667 5.01 0.00 0.00 4.45
2335 3244 2.535317 AACAGGCCATCCCCAGGT 60.535 61.111 5.01 0.00 0.00 4.00
2336 3245 2.922704 AACAGGCCATCCCCAGGTG 61.923 63.158 5.01 0.00 0.00 4.00
2337 3246 3.341629 CAGGCCATCCCCAGGTGT 61.342 66.667 5.01 0.00 0.00 4.16
2338 3247 2.535317 AGGCCATCCCCAGGTGTT 60.535 61.111 5.01 0.00 0.00 3.32
2339 3248 2.169810 AGGCCATCCCCAGGTGTTT 61.170 57.895 5.01 0.00 0.00 2.83
2340 3249 1.229177 GGCCATCCCCAGGTGTTTT 60.229 57.895 0.00 0.00 0.00 2.43
2341 3250 0.835971 GGCCATCCCCAGGTGTTTTT 60.836 55.000 0.00 0.00 0.00 1.94
2342 3251 0.321346 GCCATCCCCAGGTGTTTTTG 59.679 55.000 0.00 0.00 0.00 2.44
2445 3354 7.774157 TGCTATAATTGTATTAACCGGAAACCA 59.226 33.333 9.46 0.00 0.00 3.67
2525 3434 4.626042 AGCTCGTTGATCAATAGATGGTC 58.374 43.478 19.51 9.51 39.79 4.02
2535 3445 4.792068 TCAATAGATGGTCATGGTTTCCC 58.208 43.478 0.00 0.00 0.00 3.97
2553 3463 6.464222 GTTTCCCGATCATGGACATTAGATA 58.536 40.000 0.49 0.00 0.00 1.98
2615 3525 3.256704 TGGACAAGACCCAATCCTAAGT 58.743 45.455 0.00 0.00 32.06 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.569297 CGTCTGCTTATGTACTGTGTTAAAAA 58.431 34.615 0.00 0.00 0.00 1.94
15 16 6.347079 GCGTCTGCTTATGTACTGTGTTAAAA 60.347 38.462 0.00 0.00 38.39 1.52
16 17 5.119588 GCGTCTGCTTATGTACTGTGTTAAA 59.880 40.000 0.00 0.00 38.39 1.52
17 18 4.624024 GCGTCTGCTTATGTACTGTGTTAA 59.376 41.667 0.00 0.00 38.39 2.01
18 19 4.171005 GCGTCTGCTTATGTACTGTGTTA 58.829 43.478 0.00 0.00 38.39 2.41
19 20 2.993899 GCGTCTGCTTATGTACTGTGTT 59.006 45.455 0.00 0.00 38.39 3.32
20 21 2.607187 GCGTCTGCTTATGTACTGTGT 58.393 47.619 0.00 0.00 38.39 3.72
33 34 4.109766 TGTGTGTATGTATAAGCGTCTGC 58.890 43.478 0.00 0.00 43.24 4.26
34 35 6.915843 TGTATGTGTGTATGTATAAGCGTCTG 59.084 38.462 0.00 0.00 0.00 3.51
35 36 6.916387 GTGTATGTGTGTATGTATAAGCGTCT 59.084 38.462 0.00 0.00 0.00 4.18
36 37 6.916387 AGTGTATGTGTGTATGTATAAGCGTC 59.084 38.462 0.00 0.00 0.00 5.19
37 38 6.802608 AGTGTATGTGTGTATGTATAAGCGT 58.197 36.000 0.00 0.00 0.00 5.07
38 39 7.694388 AAGTGTATGTGTGTATGTATAAGCG 57.306 36.000 0.00 0.00 0.00 4.68
39 40 8.688184 CGTAAGTGTATGTGTGTATGTATAAGC 58.312 37.037 0.00 0.00 0.00 3.09
61 62 5.927115 TGTGTGCATGTGTTTATAGACGTAA 59.073 36.000 0.00 0.00 0.00 3.18
62 63 5.346551 GTGTGTGCATGTGTTTATAGACGTA 59.653 40.000 0.00 0.00 0.00 3.57
63 64 4.151689 GTGTGTGCATGTGTTTATAGACGT 59.848 41.667 0.00 0.00 0.00 4.34
64 65 4.151512 TGTGTGTGCATGTGTTTATAGACG 59.848 41.667 0.00 0.00 0.00 4.18
65 66 5.605564 TGTGTGTGCATGTGTTTATAGAC 57.394 39.130 0.00 0.00 0.00 2.59
66 67 5.049060 GGTTGTGTGTGCATGTGTTTATAGA 60.049 40.000 0.00 0.00 0.00 1.98
67 68 5.048782 AGGTTGTGTGTGCATGTGTTTATAG 60.049 40.000 0.00 0.00 0.00 1.31
68 69 4.824537 AGGTTGTGTGTGCATGTGTTTATA 59.175 37.500 0.00 0.00 0.00 0.98
69 70 3.636300 AGGTTGTGTGTGCATGTGTTTAT 59.364 39.130 0.00 0.00 0.00 1.40
70 71 3.020274 AGGTTGTGTGTGCATGTGTTTA 58.980 40.909 0.00 0.00 0.00 2.01
71 72 1.824230 AGGTTGTGTGTGCATGTGTTT 59.176 42.857 0.00 0.00 0.00 2.83
72 73 1.473258 AGGTTGTGTGTGCATGTGTT 58.527 45.000 0.00 0.00 0.00 3.32
73 74 1.946768 GTAGGTTGTGTGTGCATGTGT 59.053 47.619 0.00 0.00 0.00 3.72
74 75 1.266718 GGTAGGTTGTGTGTGCATGTG 59.733 52.381 0.00 0.00 0.00 3.21
75 76 1.142870 AGGTAGGTTGTGTGTGCATGT 59.857 47.619 0.00 0.00 0.00 3.21
76 77 1.806542 GAGGTAGGTTGTGTGTGCATG 59.193 52.381 0.00 0.00 0.00 4.06
77 78 1.699634 AGAGGTAGGTTGTGTGTGCAT 59.300 47.619 0.00 0.00 0.00 3.96
78 79 1.128200 AGAGGTAGGTTGTGTGTGCA 58.872 50.000 0.00 0.00 0.00 4.57
79 80 3.056107 TCATAGAGGTAGGTTGTGTGTGC 60.056 47.826 0.00 0.00 0.00 4.57
80 81 4.748892 CTCATAGAGGTAGGTTGTGTGTG 58.251 47.826 0.00 0.00 0.00 3.82
81 82 3.195825 GCTCATAGAGGTAGGTTGTGTGT 59.804 47.826 0.00 0.00 0.00 3.72
82 83 3.195610 TGCTCATAGAGGTAGGTTGTGTG 59.804 47.826 0.00 0.00 0.00 3.82
83 84 3.195825 GTGCTCATAGAGGTAGGTTGTGT 59.804 47.826 0.00 0.00 0.00 3.72
84 85 3.735208 CGTGCTCATAGAGGTAGGTTGTG 60.735 52.174 0.00 0.00 0.00 3.33
85 86 2.427453 CGTGCTCATAGAGGTAGGTTGT 59.573 50.000 0.00 0.00 0.00 3.32
86 87 2.427453 ACGTGCTCATAGAGGTAGGTTG 59.573 50.000 0.00 0.00 0.00 3.77
87 88 2.736347 ACGTGCTCATAGAGGTAGGTT 58.264 47.619 0.00 0.00 0.00 3.50
88 89 2.438800 ACGTGCTCATAGAGGTAGGT 57.561 50.000 0.00 0.00 0.00 3.08
89 90 2.688446 TGAACGTGCTCATAGAGGTAGG 59.312 50.000 0.00 0.00 0.00 3.18
90 91 4.371855 TTGAACGTGCTCATAGAGGTAG 57.628 45.455 0.00 0.00 0.00 3.18
91 92 4.794278 TTTGAACGTGCTCATAGAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
92 93 3.678056 TTTGAACGTGCTCATAGAGGT 57.322 42.857 0.00 0.00 0.00 3.85
93 94 3.745975 TGTTTTGAACGTGCTCATAGAGG 59.254 43.478 0.00 0.00 0.00 3.69
94 95 4.449068 ACTGTTTTGAACGTGCTCATAGAG 59.551 41.667 0.00 0.00 0.00 2.43
95 96 4.211164 CACTGTTTTGAACGTGCTCATAGA 59.789 41.667 0.00 0.00 32.44 1.98
96 97 4.211164 TCACTGTTTTGAACGTGCTCATAG 59.789 41.667 0.00 0.00 36.53 2.23
97 98 4.123506 TCACTGTTTTGAACGTGCTCATA 58.876 39.130 0.00 0.00 36.53 2.15
98 99 2.942376 TCACTGTTTTGAACGTGCTCAT 59.058 40.909 0.00 0.00 36.53 2.90
99 100 2.351418 CTCACTGTTTTGAACGTGCTCA 59.649 45.455 0.00 0.00 36.53 4.26
100 101 2.851008 GCTCACTGTTTTGAACGTGCTC 60.851 50.000 0.00 0.00 36.53 4.26
101 102 1.064060 GCTCACTGTTTTGAACGTGCT 59.936 47.619 0.00 0.00 36.53 4.40
102 103 1.466855 GCTCACTGTTTTGAACGTGC 58.533 50.000 0.00 0.00 36.53 5.34
103 104 1.594518 CGGCTCACTGTTTTGAACGTG 60.595 52.381 0.00 8.45 37.30 4.49
104 105 0.655733 CGGCTCACTGTTTTGAACGT 59.344 50.000 0.00 0.00 0.00 3.99
105 106 0.041312 CCGGCTCACTGTTTTGAACG 60.041 55.000 0.00 0.00 0.00 3.95
106 107 0.317854 GCCGGCTCACTGTTTTGAAC 60.318 55.000 22.15 0.00 0.00 3.18
107 108 0.749818 TGCCGGCTCACTGTTTTGAA 60.750 50.000 29.70 0.00 0.00 2.69
108 109 1.153066 TGCCGGCTCACTGTTTTGA 60.153 52.632 29.70 0.00 0.00 2.69
109 110 1.008538 GTGCCGGCTCACTGTTTTG 60.009 57.895 29.70 0.00 34.29 2.44
110 111 0.823356 ATGTGCCGGCTCACTGTTTT 60.823 50.000 31.72 13.50 37.81 2.43
111 112 1.228245 ATGTGCCGGCTCACTGTTT 60.228 52.632 31.72 14.25 37.81 2.83
112 113 1.672356 GATGTGCCGGCTCACTGTT 60.672 57.895 31.72 17.23 37.81 3.16
113 114 2.046892 GATGTGCCGGCTCACTGT 60.047 61.111 31.72 17.61 37.81 3.55
114 115 1.028330 AATGATGTGCCGGCTCACTG 61.028 55.000 31.72 0.00 37.81 3.66
115 116 0.322816 AAATGATGTGCCGGCTCACT 60.323 50.000 31.72 20.48 37.81 3.41
116 117 0.527565 AAAATGATGTGCCGGCTCAC 59.472 50.000 31.72 23.78 37.48 3.51
117 118 0.527113 CAAAATGATGTGCCGGCTCA 59.473 50.000 31.27 31.27 0.00 4.26
118 119 0.810648 TCAAAATGATGTGCCGGCTC 59.189 50.000 29.70 25.38 0.00 4.70
119 120 0.813184 CTCAAAATGATGTGCCGGCT 59.187 50.000 29.70 7.33 0.00 5.52
120 121 0.810648 TCTCAAAATGATGTGCCGGC 59.189 50.000 22.73 22.73 0.00 6.13
121 122 3.129113 TCAATCTCAAAATGATGTGCCGG 59.871 43.478 0.00 0.00 0.00 6.13
122 123 4.359971 TCAATCTCAAAATGATGTGCCG 57.640 40.909 0.00 0.00 0.00 5.69
123 124 8.706492 TTTTATCAATCTCAAAATGATGTGCC 57.294 30.769 0.00 0.00 35.53 5.01
134 135 9.816354 TGTCTATGTCGATTTTATCAATCTCAA 57.184 29.630 0.00 0.00 0.00 3.02
135 136 9.249457 GTGTCTATGTCGATTTTATCAATCTCA 57.751 33.333 0.00 0.00 0.00 3.27
136 137 9.249457 TGTGTCTATGTCGATTTTATCAATCTC 57.751 33.333 0.00 0.00 0.00 2.75
137 138 9.770097 ATGTGTCTATGTCGATTTTATCAATCT 57.230 29.630 0.00 0.00 0.00 2.40
140 141 8.539674 CGAATGTGTCTATGTCGATTTTATCAA 58.460 33.333 0.00 0.00 33.63 2.57
141 142 7.704899 ACGAATGTGTCTATGTCGATTTTATCA 59.295 33.333 0.00 0.00 35.71 2.15
142 143 8.062231 ACGAATGTGTCTATGTCGATTTTATC 57.938 34.615 0.00 0.00 35.71 1.75
143 144 9.181805 CTACGAATGTGTCTATGTCGATTTTAT 57.818 33.333 0.00 0.00 35.71 1.40
144 145 8.186163 ACTACGAATGTGTCTATGTCGATTTTA 58.814 33.333 0.00 0.00 35.71 1.52
145 146 7.033791 ACTACGAATGTGTCTATGTCGATTTT 58.966 34.615 0.00 0.00 35.71 1.82
146 147 6.561614 ACTACGAATGTGTCTATGTCGATTT 58.438 36.000 0.00 0.00 35.71 2.17
147 148 6.132791 ACTACGAATGTGTCTATGTCGATT 57.867 37.500 0.00 0.00 35.71 3.34
148 149 5.752892 ACTACGAATGTGTCTATGTCGAT 57.247 39.130 0.00 0.00 35.71 3.59
149 150 5.581874 TGTACTACGAATGTGTCTATGTCGA 59.418 40.000 0.00 0.00 35.71 4.20
150 151 5.803118 TGTACTACGAATGTGTCTATGTCG 58.197 41.667 0.00 0.00 37.71 4.35
151 152 8.371053 GTTTTGTACTACGAATGTGTCTATGTC 58.629 37.037 0.00 0.00 0.00 3.06
152 153 7.061441 CGTTTTGTACTACGAATGTGTCTATGT 59.939 37.037 9.21 0.00 40.03 2.29
153 154 7.381079 CGTTTTGTACTACGAATGTGTCTATG 58.619 38.462 9.21 0.00 40.03 2.23
154 155 6.529125 CCGTTTTGTACTACGAATGTGTCTAT 59.471 38.462 14.39 0.00 40.03 1.98
155 156 5.858049 CCGTTTTGTACTACGAATGTGTCTA 59.142 40.000 14.39 0.00 40.03 2.59
156 157 4.682860 CCGTTTTGTACTACGAATGTGTCT 59.317 41.667 14.39 0.00 40.03 3.41
157 158 4.445385 ACCGTTTTGTACTACGAATGTGTC 59.555 41.667 14.39 0.00 40.03 3.67
158 159 4.209703 CACCGTTTTGTACTACGAATGTGT 59.790 41.667 14.39 4.10 40.03 3.72
159 160 4.445052 TCACCGTTTTGTACTACGAATGTG 59.555 41.667 14.39 13.32 40.03 3.21
160 161 4.619973 TCACCGTTTTGTACTACGAATGT 58.380 39.130 14.39 4.64 40.03 2.71
161 162 5.579384 TTCACCGTTTTGTACTACGAATG 57.421 39.130 14.39 12.23 40.03 2.67
162 163 4.151157 GCTTCACCGTTTTGTACTACGAAT 59.849 41.667 14.39 3.31 40.03 3.34
163 164 3.490526 GCTTCACCGTTTTGTACTACGAA 59.509 43.478 14.39 3.94 40.03 3.85
164 165 3.052036 GCTTCACCGTTTTGTACTACGA 58.948 45.455 14.39 0.00 40.03 3.43
165 166 2.156310 GGCTTCACCGTTTTGTACTACG 59.844 50.000 8.22 8.22 37.50 3.51
166 167 3.059393 GTGGCTTCACCGTTTTGTACTAC 60.059 47.826 0.00 0.00 43.94 2.73
167 168 3.132925 GTGGCTTCACCGTTTTGTACTA 58.867 45.455 0.00 0.00 43.94 1.82
168 169 1.944709 GTGGCTTCACCGTTTTGTACT 59.055 47.619 0.00 0.00 43.94 2.73
169 170 1.333435 CGTGGCTTCACCGTTTTGTAC 60.333 52.381 0.00 0.00 43.94 2.90
170 171 0.938713 CGTGGCTTCACCGTTTTGTA 59.061 50.000 0.00 0.00 43.94 2.41
171 172 1.027792 ACGTGGCTTCACCGTTTTGT 61.028 50.000 0.00 0.00 43.94 2.83
172 173 0.938713 TACGTGGCTTCACCGTTTTG 59.061 50.000 0.00 0.00 43.94 2.44
173 174 1.533731 CATACGTGGCTTCACCGTTTT 59.466 47.619 0.00 0.00 43.94 2.43
174 175 1.153353 CATACGTGGCTTCACCGTTT 58.847 50.000 0.00 0.00 43.94 3.60
175 176 0.672401 CCATACGTGGCTTCACCGTT 60.672 55.000 0.00 0.00 43.94 4.44
176 177 1.079405 CCATACGTGGCTTCACCGT 60.079 57.895 0.00 0.00 43.94 4.83
177 178 3.794270 CCATACGTGGCTTCACCG 58.206 61.111 0.00 0.00 43.94 4.94
186 187 1.643868 ATGTTGCGTGGCCATACGTG 61.644 55.000 9.72 0.00 45.36 4.49
187 188 0.108089 TATGTTGCGTGGCCATACGT 60.108 50.000 9.72 9.32 45.36 3.57
188 189 0.581529 CTATGTTGCGTGGCCATACG 59.418 55.000 9.72 10.63 46.28 3.06
189 190 0.944386 CCTATGTTGCGTGGCCATAC 59.056 55.000 9.72 4.55 0.00 2.39
190 191 0.544223 ACCTATGTTGCGTGGCCATA 59.456 50.000 9.72 0.00 0.00 2.74
191 192 0.544223 TACCTATGTTGCGTGGCCAT 59.456 50.000 9.72 0.00 0.00 4.40
192 193 0.107897 CTACCTATGTTGCGTGGCCA 60.108 55.000 0.00 0.00 0.00 5.36
193 194 0.107848 ACTACCTATGTTGCGTGGCC 60.108 55.000 0.00 0.00 0.00 5.36
194 195 1.664151 GAACTACCTATGTTGCGTGGC 59.336 52.381 0.00 0.00 0.00 5.01
195 196 2.930040 CAGAACTACCTATGTTGCGTGG 59.070 50.000 0.00 0.00 0.00 4.94
196 197 3.845178 TCAGAACTACCTATGTTGCGTG 58.155 45.455 0.00 0.00 0.00 5.34
197 198 4.243270 GTTCAGAACTACCTATGTTGCGT 58.757 43.478 6.00 0.00 0.00 5.24
198 199 3.303495 CGTTCAGAACTACCTATGTTGCG 59.697 47.826 11.60 0.00 0.00 4.85
199 200 4.326548 GTCGTTCAGAACTACCTATGTTGC 59.673 45.833 11.60 0.00 0.00 4.17
200 201 4.557690 CGTCGTTCAGAACTACCTATGTTG 59.442 45.833 11.60 0.00 0.00 3.33
201 202 4.456911 TCGTCGTTCAGAACTACCTATGTT 59.543 41.667 11.60 0.00 0.00 2.71
202 203 4.005650 TCGTCGTTCAGAACTACCTATGT 58.994 43.478 11.60 0.00 0.00 2.29
203 204 4.496010 CCTCGTCGTTCAGAACTACCTATG 60.496 50.000 11.60 0.00 0.00 2.23
204 205 3.626670 CCTCGTCGTTCAGAACTACCTAT 59.373 47.826 11.60 0.00 0.00 2.57
205 206 3.005554 CCTCGTCGTTCAGAACTACCTA 58.994 50.000 11.60 0.58 0.00 3.08
206 207 1.811359 CCTCGTCGTTCAGAACTACCT 59.189 52.381 11.60 0.00 0.00 3.08
207 208 1.538950 ACCTCGTCGTTCAGAACTACC 59.461 52.381 11.60 0.00 0.00 3.18
208 209 2.985406 ACCTCGTCGTTCAGAACTAC 57.015 50.000 11.60 9.55 0.00 2.73
209 210 4.275689 TGTTTACCTCGTCGTTCAGAACTA 59.724 41.667 11.60 0.00 0.00 2.24
210 211 3.067180 TGTTTACCTCGTCGTTCAGAACT 59.933 43.478 11.60 0.00 0.00 3.01
211 212 3.374745 TGTTTACCTCGTCGTTCAGAAC 58.625 45.455 2.85 2.85 0.00 3.01
212 213 3.713858 TGTTTACCTCGTCGTTCAGAA 57.286 42.857 0.00 0.00 0.00 3.02
213 214 3.928727 ATGTTTACCTCGTCGTTCAGA 57.071 42.857 0.00 0.00 0.00 3.27
214 215 5.159209 AGTTATGTTTACCTCGTCGTTCAG 58.841 41.667 0.00 0.00 0.00 3.02
215 216 5.125100 AGTTATGTTTACCTCGTCGTTCA 57.875 39.130 0.00 0.00 0.00 3.18
216 217 5.741040 CCTAGTTATGTTTACCTCGTCGTTC 59.259 44.000 0.00 0.00 0.00 3.95
217 218 5.644644 CCTAGTTATGTTTACCTCGTCGTT 58.355 41.667 0.00 0.00 0.00 3.85
218 219 4.439289 GCCTAGTTATGTTTACCTCGTCGT 60.439 45.833 0.00 0.00 0.00 4.34
219 220 4.040376 GCCTAGTTATGTTTACCTCGTCG 58.960 47.826 0.00 0.00 0.00 5.12
220 221 5.002464 TGCCTAGTTATGTTTACCTCGTC 57.998 43.478 0.00 0.00 0.00 4.20
221 222 5.173664 GTTGCCTAGTTATGTTTACCTCGT 58.826 41.667 0.00 0.00 0.00 4.18
222 223 5.172934 TGTTGCCTAGTTATGTTTACCTCG 58.827 41.667 0.00 0.00 0.00 4.63
223 224 7.443259 TTTGTTGCCTAGTTATGTTTACCTC 57.557 36.000 0.00 0.00 0.00 3.85
224 225 7.520937 CGTTTTGTTGCCTAGTTATGTTTACCT 60.521 37.037 0.00 0.00 0.00 3.08
225 226 6.579666 CGTTTTGTTGCCTAGTTATGTTTACC 59.420 38.462 0.00 0.00 0.00 2.85
226 227 6.579666 CCGTTTTGTTGCCTAGTTATGTTTAC 59.420 38.462 0.00 0.00 0.00 2.01
227 228 6.485984 TCCGTTTTGTTGCCTAGTTATGTTTA 59.514 34.615 0.00 0.00 0.00 2.01
228 229 5.299782 TCCGTTTTGTTGCCTAGTTATGTTT 59.700 36.000 0.00 0.00 0.00 2.83
229 230 4.822896 TCCGTTTTGTTGCCTAGTTATGTT 59.177 37.500 0.00 0.00 0.00 2.71
230 231 4.391155 TCCGTTTTGTTGCCTAGTTATGT 58.609 39.130 0.00 0.00 0.00 2.29
231 232 5.365403 TTCCGTTTTGTTGCCTAGTTATG 57.635 39.130 0.00 0.00 0.00 1.90
232 233 6.394025 TTTTCCGTTTTGTTGCCTAGTTAT 57.606 33.333 0.00 0.00 0.00 1.89
233 234 5.831702 TTTTCCGTTTTGTTGCCTAGTTA 57.168 34.783 0.00 0.00 0.00 2.24
234 235 4.722361 TTTTCCGTTTTGTTGCCTAGTT 57.278 36.364 0.00 0.00 0.00 2.24
235 236 4.722361 TTTTTCCGTTTTGTTGCCTAGT 57.278 36.364 0.00 0.00 0.00 2.57
236 237 7.436970 AGTTTATTTTTCCGTTTTGTTGCCTAG 59.563 33.333 0.00 0.00 0.00 3.02
237 238 7.266400 AGTTTATTTTTCCGTTTTGTTGCCTA 58.734 30.769 0.00 0.00 0.00 3.93
238 239 6.110033 AGTTTATTTTTCCGTTTTGTTGCCT 58.890 32.000 0.00 0.00 0.00 4.75
239 240 6.352682 AGTTTATTTTTCCGTTTTGTTGCC 57.647 33.333 0.00 0.00 0.00 4.52
240 241 7.896894 TGTAGTTTATTTTTCCGTTTTGTTGC 58.103 30.769 0.00 0.00 0.00 4.17
241 242 9.894439 CTTGTAGTTTATTTTTCCGTTTTGTTG 57.106 29.630 0.00 0.00 0.00 3.33
242 243 9.642327 ACTTGTAGTTTATTTTTCCGTTTTGTT 57.358 25.926 0.00 0.00 0.00 2.83
243 244 9.642327 AACTTGTAGTTTATTTTTCCGTTTTGT 57.358 25.926 0.00 0.00 34.11 2.83
247 248 9.726232 GAAGAACTTGTAGTTTATTTTTCCGTT 57.274 29.630 0.00 0.00 38.80 4.44
248 249 9.117183 AGAAGAACTTGTAGTTTATTTTTCCGT 57.883 29.630 0.00 0.00 38.80 4.69
249 250 9.382244 CAGAAGAACTTGTAGTTTATTTTTCCG 57.618 33.333 0.00 0.00 38.80 4.30
268 269 1.337260 GGCTCTGCTCGTTCAGAAGAA 60.337 52.381 9.78 0.00 41.99 2.52
269 270 0.244994 GGCTCTGCTCGTTCAGAAGA 59.755 55.000 9.78 0.00 41.99 2.87
270 271 0.246086 AGGCTCTGCTCGTTCAGAAG 59.754 55.000 9.78 6.40 41.99 2.85
271 272 0.244994 GAGGCTCTGCTCGTTCAGAA 59.755 55.000 7.40 0.00 41.99 3.02
272 273 1.599606 GGAGGCTCTGCTCGTTCAGA 61.600 60.000 15.23 8.57 40.50 3.27
273 274 1.153667 GGAGGCTCTGCTCGTTCAG 60.154 63.158 15.23 1.24 35.46 3.02
274 275 1.599606 GAGGAGGCTCTGCTCGTTCA 61.600 60.000 15.23 0.00 38.99 3.18
275 276 1.140804 GAGGAGGCTCTGCTCGTTC 59.859 63.158 15.23 0.00 38.99 3.95
276 277 3.293702 GAGGAGGCTCTGCTCGTT 58.706 61.111 15.23 0.00 38.99 3.85
279 280 0.975040 TTCAGGAGGAGGCTCTGCTC 60.975 60.000 15.23 12.86 46.01 4.26
280 281 0.326427 ATTCAGGAGGAGGCTCTGCT 60.326 55.000 15.23 8.21 35.80 4.24
281 282 1.344114 CTATTCAGGAGGAGGCTCTGC 59.656 57.143 15.23 6.54 0.00 4.26
282 283 2.956132 TCTATTCAGGAGGAGGCTCTG 58.044 52.381 15.23 4.74 0.00 3.35
283 284 3.575805 CTTCTATTCAGGAGGAGGCTCT 58.424 50.000 15.23 0.00 0.00 4.09
284 285 2.037121 GCTTCTATTCAGGAGGAGGCTC 59.963 54.545 5.78 5.78 0.00 4.70
285 286 2.046292 GCTTCTATTCAGGAGGAGGCT 58.954 52.381 0.00 0.00 0.00 4.58
286 287 1.765314 TGCTTCTATTCAGGAGGAGGC 59.235 52.381 0.00 0.00 0.00 4.70
287 288 3.708631 TCTTGCTTCTATTCAGGAGGAGG 59.291 47.826 0.00 0.00 27.94 4.30
288 289 4.161189 TGTCTTGCTTCTATTCAGGAGGAG 59.839 45.833 0.00 0.00 27.94 3.69
289 290 4.096681 TGTCTTGCTTCTATTCAGGAGGA 58.903 43.478 0.00 0.00 0.00 3.71
290 291 4.478206 TGTCTTGCTTCTATTCAGGAGG 57.522 45.455 0.00 0.00 0.00 4.30
291 292 5.240891 TGTTGTCTTGCTTCTATTCAGGAG 58.759 41.667 0.00 0.00 0.00 3.69
292 293 5.227569 TGTTGTCTTGCTTCTATTCAGGA 57.772 39.130 0.00 0.00 0.00 3.86
293 294 6.238320 GCTATGTTGTCTTGCTTCTATTCAGG 60.238 42.308 0.00 0.00 0.00 3.86
294 295 6.238320 GGCTATGTTGTCTTGCTTCTATTCAG 60.238 42.308 0.00 0.00 0.00 3.02
295 296 5.586243 GGCTATGTTGTCTTGCTTCTATTCA 59.414 40.000 0.00 0.00 0.00 2.57
296 297 5.819901 AGGCTATGTTGTCTTGCTTCTATTC 59.180 40.000 0.00 0.00 0.00 1.75
297 298 5.749462 AGGCTATGTTGTCTTGCTTCTATT 58.251 37.500 0.00 0.00 0.00 1.73
298 299 5.365021 AGGCTATGTTGTCTTGCTTCTAT 57.635 39.130 0.00 0.00 0.00 1.98
299 300 4.826274 AGGCTATGTTGTCTTGCTTCTA 57.174 40.909 0.00 0.00 0.00 2.10
300 301 3.710209 AGGCTATGTTGTCTTGCTTCT 57.290 42.857 0.00 0.00 0.00 2.85
301 302 3.311048 GCTAGGCTATGTTGTCTTGCTTC 59.689 47.826 0.00 0.00 37.42 3.86
302 303 3.054802 AGCTAGGCTATGTTGTCTTGCTT 60.055 43.478 0.00 0.00 45.33 3.91
303 304 2.503356 AGCTAGGCTATGTTGTCTTGCT 59.497 45.455 0.00 0.00 43.53 3.91
304 305 2.911484 AGCTAGGCTATGTTGTCTTGC 58.089 47.619 0.00 0.00 39.86 4.01
305 306 4.054671 GCTAGCTAGGCTATGTTGTCTTG 58.945 47.826 22.10 0.00 40.54 3.02
306 307 3.964031 AGCTAGCTAGGCTATGTTGTCTT 59.036 43.478 17.69 0.00 40.54 3.01
307 308 3.320541 CAGCTAGCTAGGCTATGTTGTCT 59.679 47.826 18.86 3.82 40.54 3.41
308 309 3.648009 CAGCTAGCTAGGCTATGTTGTC 58.352 50.000 18.86 1.47 40.54 3.18
309 310 2.224161 GCAGCTAGCTAGGCTATGTTGT 60.224 50.000 18.86 0.00 40.54 3.32
310 311 2.411904 GCAGCTAGCTAGGCTATGTTG 58.588 52.381 18.86 2.70 40.54 3.33
311 312 2.829741 GCAGCTAGCTAGGCTATGTT 57.170 50.000 18.86 0.00 40.54 2.71
322 323 2.643551 TGGATTTGGTAAGCAGCTAGC 58.356 47.619 6.62 6.62 46.19 3.42
323 324 3.063997 CGTTGGATTTGGTAAGCAGCTAG 59.936 47.826 0.00 0.00 0.00 3.42
324 325 3.006940 CGTTGGATTTGGTAAGCAGCTA 58.993 45.455 0.00 0.00 0.00 3.32
325 326 1.812571 CGTTGGATTTGGTAAGCAGCT 59.187 47.619 0.00 0.00 0.00 4.24
326 327 1.539827 ACGTTGGATTTGGTAAGCAGC 59.460 47.619 0.00 0.00 0.00 5.25
327 328 3.181510 GCTACGTTGGATTTGGTAAGCAG 60.182 47.826 0.00 0.00 0.00 4.24
328 329 2.745281 GCTACGTTGGATTTGGTAAGCA 59.255 45.455 0.00 0.00 0.00 3.91
329 330 3.007635 AGCTACGTTGGATTTGGTAAGC 58.992 45.455 0.00 0.00 0.00 3.09
330 331 4.270325 GCTAGCTACGTTGGATTTGGTAAG 59.730 45.833 7.70 0.00 0.00 2.34
331 332 4.081309 AGCTAGCTACGTTGGATTTGGTAA 60.081 41.667 17.69 0.00 0.00 2.85
332 333 3.449737 AGCTAGCTACGTTGGATTTGGTA 59.550 43.478 17.69 0.00 0.00 3.25
333 334 2.236395 AGCTAGCTACGTTGGATTTGGT 59.764 45.455 17.69 0.00 0.00 3.67
334 335 2.906354 AGCTAGCTACGTTGGATTTGG 58.094 47.619 17.69 0.00 0.00 3.28
335 336 4.437390 CCAAAGCTAGCTACGTTGGATTTG 60.437 45.833 30.67 21.27 41.05 2.32
336 337 3.689649 CCAAAGCTAGCTACGTTGGATTT 59.310 43.478 30.67 12.55 41.05 2.17
337 338 3.270877 CCAAAGCTAGCTACGTTGGATT 58.729 45.455 30.67 13.19 41.05 3.01
338 339 2.236395 ACCAAAGCTAGCTACGTTGGAT 59.764 45.455 36.64 24.22 41.05 3.41
339 340 1.621814 ACCAAAGCTAGCTACGTTGGA 59.378 47.619 36.64 0.11 41.05 3.53
340 341 2.094762 ACCAAAGCTAGCTACGTTGG 57.905 50.000 31.72 31.72 43.60 3.77
341 342 2.806244 ACAACCAAAGCTAGCTACGTTG 59.194 45.455 30.66 30.66 34.96 4.10
342 343 3.121738 ACAACCAAAGCTAGCTACGTT 57.878 42.857 19.70 16.69 0.00 3.99
343 344 2.833631 ACAACCAAAGCTAGCTACGT 57.166 45.000 19.70 11.43 0.00 3.57
344 345 4.267928 GTGATACAACCAAAGCTAGCTACG 59.732 45.833 19.70 11.98 0.00 3.51
345 346 4.267928 CGTGATACAACCAAAGCTAGCTAC 59.732 45.833 19.70 6.73 0.00 3.58
346 347 4.430007 CGTGATACAACCAAAGCTAGCTA 58.570 43.478 19.70 0.00 0.00 3.32
347 348 3.262420 CGTGATACAACCAAAGCTAGCT 58.738 45.455 12.68 12.68 0.00 3.32
348 349 2.223044 GCGTGATACAACCAAAGCTAGC 60.223 50.000 6.62 6.62 0.00 3.42
349 350 2.029244 CGCGTGATACAACCAAAGCTAG 59.971 50.000 0.00 0.00 0.00 3.42
350 351 1.996898 CGCGTGATACAACCAAAGCTA 59.003 47.619 0.00 0.00 0.00 3.32
351 352 0.796312 CGCGTGATACAACCAAAGCT 59.204 50.000 0.00 0.00 0.00 3.74
352 353 0.793104 GCGCGTGATACAACCAAAGC 60.793 55.000 8.43 0.00 0.00 3.51
353 354 0.518355 CGCGCGTGATACAACCAAAG 60.518 55.000 24.19 0.00 0.00 2.77
354 355 1.493750 CGCGCGTGATACAACCAAA 59.506 52.632 24.19 0.00 0.00 3.28
355 356 3.017656 GCGCGCGTGATACAACCAA 62.018 57.895 32.35 0.00 0.00 3.67
356 357 3.483665 GCGCGCGTGATACAACCA 61.484 61.111 32.35 0.00 0.00 3.67
357 358 4.553101 CGCGCGCGTGATACAACC 62.553 66.667 42.49 13.02 34.35 3.77
358 359 3.458164 CTCGCGCGCGTGATACAAC 62.458 63.158 46.54 17.57 40.74 3.32
359 360 3.244603 CTCGCGCGCGTGATACAA 61.245 61.111 46.54 28.39 40.74 2.41
373 374 0.041400 TGTGTTGCGATTTGTGCTCG 60.041 50.000 0.00 0.00 39.11 5.03
374 375 2.336554 ATGTGTTGCGATTTGTGCTC 57.663 45.000 0.00 0.00 0.00 4.26
375 376 2.414559 GCTATGTGTTGCGATTTGTGCT 60.415 45.455 0.00 0.00 0.00 4.40
376 377 1.913403 GCTATGTGTTGCGATTTGTGC 59.087 47.619 0.00 0.00 0.00 4.57
377 378 2.518949 GGCTATGTGTTGCGATTTGTG 58.481 47.619 0.00 0.00 0.00 3.33
378 379 1.130373 CGGCTATGTGTTGCGATTTGT 59.870 47.619 0.00 0.00 0.00 2.83
379 380 1.396648 TCGGCTATGTGTTGCGATTTG 59.603 47.619 0.00 0.00 0.00 2.32
380 381 1.732941 TCGGCTATGTGTTGCGATTT 58.267 45.000 0.00 0.00 0.00 2.17
381 382 1.953559 ATCGGCTATGTGTTGCGATT 58.046 45.000 0.00 0.00 0.00 3.34
382 383 2.223947 TGTATCGGCTATGTGTTGCGAT 60.224 45.455 0.00 0.00 0.00 4.58
383 384 1.135333 TGTATCGGCTATGTGTTGCGA 59.865 47.619 0.00 0.00 0.00 5.10
384 385 1.566404 TGTATCGGCTATGTGTTGCG 58.434 50.000 0.00 0.00 0.00 4.85
385 386 2.224079 CCATGTATCGGCTATGTGTTGC 59.776 50.000 0.00 0.00 0.00 4.17
386 387 2.224079 GCCATGTATCGGCTATGTGTTG 59.776 50.000 0.00 0.00 46.56 3.33
387 388 2.494059 GCCATGTATCGGCTATGTGTT 58.506 47.619 0.00 0.00 46.56 3.32
388 389 2.169832 GCCATGTATCGGCTATGTGT 57.830 50.000 0.00 0.00 46.56 3.72
396 397 1.961277 GAAGGCGGCCATGTATCGG 60.961 63.158 23.09 0.00 0.00 4.18
397 398 1.961277 GGAAGGCGGCCATGTATCG 60.961 63.158 23.09 0.00 0.00 2.92
398 399 1.961277 CGGAAGGCGGCCATGTATC 60.961 63.158 23.09 10.58 0.00 2.24
399 400 2.111043 CGGAAGGCGGCCATGTAT 59.889 61.111 23.09 1.08 0.00 2.29
400 401 4.849310 GCGGAAGGCGGCCATGTA 62.849 66.667 23.09 0.00 34.59 2.29
433 434 0.976641 AGGATCAGAACTGTCGCCAA 59.023 50.000 0.00 0.00 0.00 4.52
545 549 4.974989 GGTTGGGGCGAACGTCGT 62.975 66.667 0.00 0.00 42.81 4.34
546 550 2.768503 TTAGGTTGGGGCGAACGTCG 62.769 60.000 0.00 0.00 43.89 5.12
547 551 1.004679 TTAGGTTGGGGCGAACGTC 60.005 57.895 0.00 0.00 0.00 4.34
596 600 2.126071 TGCGTAGGTCGAGCTTGC 60.126 61.111 23.90 24.94 42.86 4.01
669 680 3.157949 GGAGAAGGCCCGGGAGAG 61.158 72.222 29.31 0.00 0.00 3.20
670 681 4.798682 GGGAGAAGGCCCGGGAGA 62.799 72.222 29.31 0.00 38.58 3.71
677 688 3.978571 GAAGGTGCGGGAGAAGGCC 62.979 68.421 0.00 0.00 0.00 5.19
678 689 2.436824 GAAGGTGCGGGAGAAGGC 60.437 66.667 0.00 0.00 0.00 4.35
679 690 1.219393 GAGAAGGTGCGGGAGAAGG 59.781 63.158 0.00 0.00 0.00 3.46
680 691 1.219393 GGAGAAGGTGCGGGAGAAG 59.781 63.158 0.00 0.00 0.00 2.85
681 692 2.646175 CGGAGAAGGTGCGGGAGAA 61.646 63.158 0.00 0.00 36.11 2.87
682 693 3.068691 CGGAGAAGGTGCGGGAGA 61.069 66.667 0.00 0.00 36.11 3.71
689 700 3.330720 AAGGCCCCGGAGAAGGTG 61.331 66.667 0.73 0.00 0.00 4.00
690 701 3.009714 GAAGGCCCCGGAGAAGGT 61.010 66.667 0.73 0.00 0.00 3.50
691 702 2.689034 AGAAGGCCCCGGAGAAGG 60.689 66.667 0.73 0.00 0.00 3.46
692 703 2.736826 GGAGAAGGCCCCGGAGAAG 61.737 68.421 0.73 0.00 0.00 2.85
733 780 0.319900 GCGCTTTCACCACTCTGAGA 60.320 55.000 12.44 0.00 0.00 3.27
734 781 1.294659 GGCGCTTTCACCACTCTGAG 61.295 60.000 7.64 2.45 0.00 3.35
735 782 1.301716 GGCGCTTTCACCACTCTGA 60.302 57.895 7.64 0.00 0.00 3.27
789 866 3.228017 TCGTCCTGTTGGCCGTCA 61.228 61.111 0.00 0.00 0.00 4.35
984 1061 1.450312 CATGTTCTCCTCGGGCCAC 60.450 63.158 4.39 0.00 0.00 5.01
1188 1527 0.035630 GGATCTGCTGGCTGTTGAGT 60.036 55.000 0.00 0.00 0.00 3.41
1242 1581 0.680921 CGGTGATGGTGATGCCCTTT 60.681 55.000 0.00 0.00 36.04 3.11
1461 1800 7.101700 TGTAGACTGTTATGTTAGAGACTCGA 58.898 38.462 0.00 0.00 0.00 4.04
1470 1809 4.178540 GCGCCTTGTAGACTGTTATGTTA 58.821 43.478 0.00 0.00 0.00 2.41
1824 2163 2.062361 TTGCAGAAGCGTGCTTGTGG 62.062 55.000 26.62 12.98 44.38 4.17
1839 2178 3.443037 GTTGTTGCATACACTTGTTGCA 58.557 40.909 12.32 12.32 38.91 4.08
1887 2226 1.227674 GCAGGGCTTGGGATCTACG 60.228 63.158 0.00 0.00 0.00 3.51
1900 2239 1.334869 GTTGTTGTTGTCTCAGCAGGG 59.665 52.381 0.00 0.00 31.01 4.45
1940 2306 5.923684 CACGCACAAAAATTAAGGGTTGTAT 59.076 36.000 1.44 0.00 33.04 2.29
1960 2327 7.582435 AGATTATACTATGTACATTGCACGC 57.418 36.000 14.77 1.21 0.00 5.34
2034 2403 9.941664 GAATAAATGACAGAAGGTGTATGATTG 57.058 33.333 0.00 0.00 40.56 2.67
2048 2417 8.648557 TCAGAAGGTAATCGAATAAATGACAG 57.351 34.615 0.00 0.00 0.00 3.51
2059 2968 3.509967 TGCAGTTCTCAGAAGGTAATCGA 59.490 43.478 0.00 0.00 0.00 3.59
2060 2969 3.849911 TGCAGTTCTCAGAAGGTAATCG 58.150 45.455 0.00 0.00 0.00 3.34
2217 3126 5.334414 CCACAACAAAGATCAAGAGTGCTAC 60.334 44.000 0.00 0.00 0.00 3.58
2218 3127 4.756642 CCACAACAAAGATCAAGAGTGCTA 59.243 41.667 0.00 0.00 0.00 3.49
2242 3151 2.943033 GTTGTCACTAGCAACCACAAGT 59.057 45.455 0.00 0.00 40.01 3.16
2243 3152 3.206150 AGTTGTCACTAGCAACCACAAG 58.794 45.455 7.77 0.00 45.14 3.16
2244 3153 3.275617 AGTTGTCACTAGCAACCACAA 57.724 42.857 7.77 0.00 45.14 3.33
2245 3154 3.275617 AAGTTGTCACTAGCAACCACA 57.724 42.857 7.77 0.00 45.14 4.17
2246 3155 4.351192 CAAAAGTTGTCACTAGCAACCAC 58.649 43.478 7.77 0.97 45.14 4.16
2247 3156 3.380004 CCAAAAGTTGTCACTAGCAACCA 59.620 43.478 7.77 0.00 45.14 3.67
2248 3157 3.380320 ACCAAAAGTTGTCACTAGCAACC 59.620 43.478 7.77 0.00 45.14 3.77
2249 3158 4.632538 ACCAAAAGTTGTCACTAGCAAC 57.367 40.909 4.14 4.14 44.57 4.17
2273 3182 0.108424 GCTCGATGGACTGAAGCACT 60.108 55.000 0.00 0.00 0.00 4.40
2296 3205 1.371145 GACGCGGCTAGAGATGCTC 60.371 63.158 12.47 0.00 0.00 4.26
2297 3206 2.725008 GACGCGGCTAGAGATGCT 59.275 61.111 12.47 0.00 0.00 3.79
2298 3207 2.355244 GGACGCGGCTAGAGATGC 60.355 66.667 13.91 0.00 0.00 3.91
2299 3208 2.336809 GGGACGCGGCTAGAGATG 59.663 66.667 13.91 0.00 0.00 2.90
2300 3209 2.913060 GGGGACGCGGCTAGAGAT 60.913 66.667 13.91 0.00 0.00 2.75
2301 3210 3.949885 TTGGGGACGCGGCTAGAGA 62.950 63.158 13.91 0.00 0.00 3.10
2302 3211 3.458163 TTGGGGACGCGGCTAGAG 61.458 66.667 13.91 0.00 0.00 2.43
2303 3212 3.766691 GTTGGGGACGCGGCTAGA 61.767 66.667 13.91 0.00 0.00 2.43
2304 3213 4.077184 TGTTGGGGACGCGGCTAG 62.077 66.667 13.91 0.00 0.00 3.42
2305 3214 4.077184 CTGTTGGGGACGCGGCTA 62.077 66.667 13.91 0.00 0.00 3.93
2310 3219 4.740822 ATGGCCTGTTGGGGACGC 62.741 66.667 3.32 0.00 37.14 5.19
2311 3220 2.438434 GATGGCCTGTTGGGGACG 60.438 66.667 3.32 0.00 37.14 4.79
2312 3221 2.043953 GGATGGCCTGTTGGGGAC 60.044 66.667 3.32 0.00 35.12 4.46
2313 3222 3.346734 GGGATGGCCTGTTGGGGA 61.347 66.667 3.32 0.00 35.12 4.81
2314 3223 4.463788 GGGGATGGCCTGTTGGGG 62.464 72.222 3.32 0.00 35.12 4.96
2315 3224 3.667217 CTGGGGATGGCCTGTTGGG 62.667 68.421 3.32 0.00 38.36 4.12
2316 3225 2.043652 CTGGGGATGGCCTGTTGG 60.044 66.667 3.32 0.00 0.00 3.77
2317 3226 2.043652 CCTGGGGATGGCCTGTTG 60.044 66.667 3.32 0.00 0.00 3.33
2318 3227 2.535317 ACCTGGGGATGGCCTGTT 60.535 61.111 3.32 0.00 0.00 3.16
2319 3228 3.341629 CACCTGGGGATGGCCTGT 61.342 66.667 3.32 0.00 0.00 4.00
2320 3229 2.445492 AAACACCTGGGGATGGCCTG 62.445 60.000 1.10 0.00 0.00 4.85
2321 3230 1.739608 AAAACACCTGGGGATGGCCT 61.740 55.000 1.10 0.00 0.00 5.19
2322 3231 0.835971 AAAAACACCTGGGGATGGCC 60.836 55.000 1.10 0.00 0.00 5.36
2323 3232 0.321346 CAAAAACACCTGGGGATGGC 59.679 55.000 1.10 0.00 0.00 4.40
2324 3233 1.344114 CACAAAAACACCTGGGGATGG 59.656 52.381 1.10 0.00 0.00 3.51
2325 3234 1.344114 CCACAAAAACACCTGGGGATG 59.656 52.381 1.10 0.00 38.51 3.51
2326 3235 1.219213 TCCACAAAAACACCTGGGGAT 59.781 47.619 1.10 0.00 40.31 3.85
2327 3236 0.631753 TCCACAAAAACACCTGGGGA 59.368 50.000 1.10 0.00 43.02 4.81
2328 3237 1.490574 TTCCACAAAAACACCTGGGG 58.509 50.000 0.00 0.00 37.47 4.96
2329 3238 3.836365 ATTTCCACAAAAACACCTGGG 57.164 42.857 0.00 0.00 0.00 4.45
2330 3239 4.690280 GCATATTTCCACAAAAACACCTGG 59.310 41.667 0.00 0.00 0.00 4.45
2331 3240 4.690280 GGCATATTTCCACAAAAACACCTG 59.310 41.667 0.00 0.00 0.00 4.00
2332 3241 4.262851 GGGCATATTTCCACAAAAACACCT 60.263 41.667 0.00 0.00 0.00 4.00
2333 3242 4.000325 GGGCATATTTCCACAAAAACACC 59.000 43.478 0.00 0.00 0.00 4.16
2334 3243 4.893608 AGGGCATATTTCCACAAAAACAC 58.106 39.130 0.00 0.00 0.00 3.32
2335 3244 6.013379 TCTAGGGCATATTTCCACAAAAACA 58.987 36.000 0.00 0.00 0.00 2.83
2336 3245 6.405842 CCTCTAGGGCATATTTCCACAAAAAC 60.406 42.308 0.00 0.00 0.00 2.43
2337 3246 5.656416 CCTCTAGGGCATATTTCCACAAAAA 59.344 40.000 0.00 0.00 0.00 1.94
2338 3247 5.200483 CCTCTAGGGCATATTTCCACAAAA 58.800 41.667 0.00 0.00 0.00 2.44
2339 3248 4.792068 CCTCTAGGGCATATTTCCACAAA 58.208 43.478 0.00 0.00 0.00 2.83
2340 3249 4.437682 CCTCTAGGGCATATTTCCACAA 57.562 45.455 0.00 0.00 0.00 3.33
2437 3346 6.429791 TTCACACATGTATTATGGTTTCCG 57.570 37.500 0.00 0.00 0.00 4.30
2469 3378 2.350522 CTCACTAGGGACATGTTGTGC 58.649 52.381 0.00 0.00 38.03 4.57
2535 3445 8.937634 TCAATGATATCTAATGTCCATGATCG 57.062 34.615 3.98 0.00 0.00 3.69
2553 3463 5.868454 TGATGTGATCCGGTTATCAATGAT 58.132 37.500 7.37 0.00 37.61 2.45
2565 3475 5.787380 TCATTCTCCTAATGATGTGATCCG 58.213 41.667 0.00 0.00 32.21 4.18
2615 3525 5.065602 ACGAACTACACGATCTTGTGCTATA 59.934 40.000 14.69 0.00 43.74 1.31
2722 3632 2.093341 ACTTGTGACGTTTGGTACACCT 60.093 45.455 0.00 0.00 39.29 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.