Multiple sequence alignment - TraesCS1B01G081400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G081400 chr1B 100.000 3518 0 0 1 3518 63961546 63958029 0.000000e+00 6497.0
1 TraesCS1B01G081400 chr1B 94.536 183 6 2 3257 3439 63944359 63944181 2.670000e-71 279.0
2 TraesCS1B01G081400 chr1B 94.536 183 6 2 3257 3439 63951349 63951171 2.670000e-71 279.0
3 TraesCS1B01G081400 chr1B 93.989 183 7 2 3257 3439 63936814 63936636 1.240000e-69 274.0
4 TraesCS1B01G081400 chr1D 89.298 1140 86 25 470 1598 44643406 44642292 0.000000e+00 1397.0
5 TraesCS1B01G081400 chr1D 89.727 915 43 27 2084 2976 44641894 44641009 0.000000e+00 1122.0
6 TraesCS1B01G081400 chr1D 94.150 359 16 3 1726 2082 44642294 44641939 3.090000e-150 542.0
7 TraesCS1B01G081400 chr1D 87.448 239 23 4 2591 2826 44640930 44640696 5.790000e-68 268.0
8 TraesCS1B01G081400 chr1D 95.556 45 2 0 3314 3358 44640237 44640193 4.870000e-09 73.1
9 TraesCS1B01G081400 chr1D 96.970 33 1 0 2975 3007 44640996 44640964 4.910000e-04 56.5
10 TraesCS1B01G081400 chr1A 84.350 1393 122 41 1 1326 44408963 44407600 0.000000e+00 1277.0
11 TraesCS1B01G081400 chr1A 94.492 817 30 9 2084 2900 44407018 44406217 0.000000e+00 1245.0
12 TraesCS1B01G081400 chr1A 92.344 627 32 2 2827 3439 44406217 44405593 0.000000e+00 878.0
13 TraesCS1B01G081400 chr1A 92.308 325 19 3 1759 2082 44407382 44407063 1.150000e-124 457.0
14 TraesCS1B01G081400 chr3D 89.621 896 65 16 2078 2953 297466355 297465468 0.000000e+00 1114.0
15 TraesCS1B01G081400 chr3A 89.409 897 62 26 2080 2953 391489918 391490804 0.000000e+00 1099.0
16 TraesCS1B01G081400 chr3A 88.321 137 12 2 1762 1895 108218036 108217901 1.010000e-35 161.0
17 TraesCS1B01G081400 chr3B 89.075 897 64 17 2078 2953 391873721 391872838 0.000000e+00 1083.0
18 TraesCS1B01G081400 chr3B 88.235 136 13 1 1763 1895 313230501 313230366 3.630000e-35 159.0
19 TraesCS1B01G081400 chr7A 76.862 752 93 29 1188 1895 546937276 546936562 2.010000e-92 350.0
20 TraesCS1B01G081400 chrUn 94.536 183 6 2 3257 3439 339391380 339391558 2.670000e-71 279.0
21 TraesCS1B01G081400 chrUn 94.536 183 6 2 3257 3439 352526103 352526281 2.670000e-71 279.0
22 TraesCS1B01G081400 chrUn 94.536 183 6 2 3257 3439 403970600 403970778 2.670000e-71 279.0
23 TraesCS1B01G081400 chrUn 98.113 159 1 1 3360 3518 352526257 352526413 3.460000e-70 276.0
24 TraesCS1B01G081400 chrUn 98.113 159 1 1 3360 3518 403970754 403970910 3.460000e-70 276.0
25 TraesCS1B01G081400 chr5D 89.855 138 10 2 1761 1895 235592227 235592363 1.300000e-39 174.0
26 TraesCS1B01G081400 chr5D 88.406 138 13 1 1761 1895 545794476 545794613 2.810000e-36 163.0
27 TraesCS1B01G081400 chr7D 88.406 138 13 1 1761 1895 485652688 485652551 2.810000e-36 163.0
28 TraesCS1B01G081400 chr7D 85.185 54 8 0 912 965 141639336 141639283 4.910000e-04 56.5
29 TraesCS1B01G081400 chr2D 88.406 138 13 1 1761 1895 592920073 592920210 2.810000e-36 163.0
30 TraesCS1B01G081400 chr2D 84.247 146 11 6 1271 1413 548512744 548512880 7.920000e-27 132.0
31 TraesCS1B01G081400 chr2D 90.000 50 3 2 3314 3361 24900959 24901008 2.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G081400 chr1B 63958029 63961546 3517 True 6497.000000 6497 100.0000 1 3518 1 chr1B.!!$R4 3517
1 TraesCS1B01G081400 chr1D 44640193 44643406 3213 True 576.433333 1397 92.1915 470 3358 6 chr1D.!!$R1 2888
2 TraesCS1B01G081400 chr1A 44405593 44408963 3370 True 964.250000 1277 90.8735 1 3439 4 chr1A.!!$R1 3438
3 TraesCS1B01G081400 chr3D 297465468 297466355 887 True 1114.000000 1114 89.6210 2078 2953 1 chr3D.!!$R1 875
4 TraesCS1B01G081400 chr3A 391489918 391490804 886 False 1099.000000 1099 89.4090 2080 2953 1 chr3A.!!$F1 873
5 TraesCS1B01G081400 chr3B 391872838 391873721 883 True 1083.000000 1083 89.0750 2078 2953 1 chr3B.!!$R2 875
6 TraesCS1B01G081400 chr7A 546936562 546937276 714 True 350.000000 350 76.8620 1188 1895 1 chr7A.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 845 0.036448 CTACGGAGGGAGATAGGCGA 59.964 60.0 0.0 0.0 0.0 5.54 F
1386 1639 0.110295 TGCCTGCCTTTTGTGCTAGA 59.890 50.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2190 0.036388 ATGAGTATTATGCGGGGGCG 60.036 55.0 0.0 0.0 0.0 6.13 R
3304 4053 0.801251 CTTGCTTCGCTGGAAAGAGG 59.199 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 8.236585 TCCATTATCATTATCACCAACAAAGG 57.763 34.615 0.00 0.00 0.00 3.11
85 86 4.776837 TCATTATCACCAACAAAGGCCAAT 59.223 37.500 5.01 0.00 0.00 3.16
103 104 4.400884 GCCAATACATACAACCATCAACCA 59.599 41.667 0.00 0.00 0.00 3.67
104 105 5.678616 GCCAATACATACAACCATCAACCAC 60.679 44.000 0.00 0.00 0.00 4.16
105 106 5.417266 CCAATACATACAACCATCAACCACA 59.583 40.000 0.00 0.00 0.00 4.17
107 108 7.363705 CCAATACATACAACCATCAACCACAAT 60.364 37.037 0.00 0.00 0.00 2.71
108 109 5.389859 ACATACAACCATCAACCACAATG 57.610 39.130 0.00 0.00 0.00 2.82
117 119 2.866726 AACCACAATGCAACCGGGC 61.867 57.895 6.32 0.00 0.00 6.13
135 137 2.126346 GCTGGTCATGCGCAAACC 60.126 61.111 28.99 28.99 0.00 3.27
151 153 3.380142 CAAACCGTTTGCATGCTAACTT 58.620 40.909 32.08 22.14 33.36 2.66
152 154 4.541779 CAAACCGTTTGCATGCTAACTTA 58.458 39.130 32.08 6.27 33.36 2.24
153 155 4.419522 AACCGTTTGCATGCTAACTTAG 57.580 40.909 32.08 24.60 31.39 2.18
167 169 3.349488 AACTTAGAAGCAAAACGTGGC 57.651 42.857 0.00 0.00 0.00 5.01
168 170 2.572290 ACTTAGAAGCAAAACGTGGCT 58.428 42.857 4.01 4.01 43.46 4.75
173 175 2.422276 AAGCAAAACGTGGCTTCATC 57.578 45.000 14.42 0.00 46.82 2.92
174 176 1.609208 AGCAAAACGTGGCTTCATCT 58.391 45.000 4.01 0.00 36.92 2.90
175 177 1.956477 AGCAAAACGTGGCTTCATCTT 59.044 42.857 4.01 0.00 36.92 2.40
195 197 8.571336 TCATCTTCTGAAGAATTTTTGGAAGAC 58.429 33.333 22.68 0.00 41.63 3.01
198 200 9.627123 TCTTCTGAAGAATTTTTGGAAGACTTA 57.373 29.630 17.32 0.00 34.70 2.24
222 227 9.899661 TTAAGATTAGCTTAATTTGGCTACTGA 57.100 29.630 10.31 0.31 42.58 3.41
290 328 6.374053 TGCAAAATAAGCAGCTATGTAACAGA 59.626 34.615 0.00 0.00 37.02 3.41
342 389 7.068226 GGATACAGTGCTAAATGGGTGTTAAAT 59.932 37.037 0.00 0.00 0.00 1.40
343 390 6.024552 ACAGTGCTAAATGGGTGTTAAATG 57.975 37.500 0.00 0.00 0.00 2.32
371 418 3.181484 ATTGTCATGGAACAATCATGCCG 60.181 43.478 6.89 0.00 44.53 5.69
383 430 2.107950 TCATGCCGTCAAAACTAGGG 57.892 50.000 0.00 0.00 0.00 3.53
405 452 6.500751 AGGGTCTGATCTTCCTTGTAGTTTTA 59.499 38.462 0.00 0.00 0.00 1.52
413 460 9.886132 GATCTTCCTTGTAGTTTTACCAGATAA 57.114 33.333 0.00 0.00 0.00 1.75
426 473 9.880157 GTTTTACCAGATAATACTACACAGGAA 57.120 33.333 0.00 0.00 0.00 3.36
435 482 9.765795 GATAATACTACACAGGAAGCTTGTTAT 57.234 33.333 2.10 0.00 0.00 1.89
450 497 9.878599 GAAGCTTGTTATATTATTGTACGCATT 57.121 29.630 2.10 0.00 0.00 3.56
461 508 5.637006 ATTGTACGCATTAACATGTGGTT 57.363 34.783 0.00 0.00 44.13 3.67
462 509 6.745159 ATTGTACGCATTAACATGTGGTTA 57.255 33.333 0.00 0.00 44.13 2.85
464 511 6.745159 TGTACGCATTAACATGTGGTTATT 57.255 33.333 0.00 0.00 44.13 1.40
466 513 7.911343 TGTACGCATTAACATGTGGTTATTAG 58.089 34.615 0.00 0.00 44.13 1.73
467 514 6.995511 ACGCATTAACATGTGGTTATTAGT 57.004 33.333 0.00 0.00 44.13 2.24
469 516 8.495361 ACGCATTAACATGTGGTTATTAGTTA 57.505 30.769 0.00 0.00 44.13 2.24
475 522 9.961264 TTAACATGTGGTTATTAGTTATGTGGA 57.039 29.630 0.00 0.00 41.43 4.02
538 586 2.978824 GGGAAGCAGCGAGGTACA 59.021 61.111 0.00 0.00 0.00 2.90
663 716 2.247437 GGTTCCCGCTCGATGATGC 61.247 63.158 0.00 0.00 0.00 3.91
776 834 3.528370 CGGGGAGCACTACGGAGG 61.528 72.222 0.00 0.00 0.00 4.30
777 835 3.155167 GGGGAGCACTACGGAGGG 61.155 72.222 0.00 0.00 0.00 4.30
780 838 1.076923 GGAGCACTACGGAGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
781 839 0.468400 GGAGCACTACGGAGGGAGAT 60.468 60.000 0.00 0.00 0.00 2.75
782 840 1.202903 GGAGCACTACGGAGGGAGATA 60.203 57.143 0.00 0.00 0.00 1.98
785 843 1.249407 CACTACGGAGGGAGATAGGC 58.751 60.000 0.00 0.00 0.00 3.93
787 845 0.036448 CTACGGAGGGAGATAGGCGA 59.964 60.000 0.00 0.00 0.00 5.54
789 847 1.073373 CGGAGGGAGATAGGCGAGA 59.927 63.158 0.00 0.00 0.00 4.04
790 848 0.958382 CGGAGGGAGATAGGCGAGAG 60.958 65.000 0.00 0.00 0.00 3.20
791 849 0.402504 GGAGGGAGATAGGCGAGAGA 59.597 60.000 0.00 0.00 0.00 3.10
863 925 0.670854 GACGAGGGACCTCTTTGCAC 60.671 60.000 15.83 0.00 40.69 4.57
871 933 1.534595 GACCTCTTTGCACAGAAGCAG 59.465 52.381 3.79 0.00 46.54 4.24
874 936 2.216046 CTCTTTGCACAGAAGCAGTCA 58.784 47.619 3.79 0.00 46.54 3.41
875 937 2.812591 CTCTTTGCACAGAAGCAGTCAT 59.187 45.455 3.79 0.00 46.54 3.06
889 951 4.613944 AGCAGTCATTTCATTTGTGTGTG 58.386 39.130 0.00 0.00 0.00 3.82
940 1004 4.158394 CCATTCATCTTCAATCCAACGGTT 59.842 41.667 0.00 0.00 0.00 4.44
957 1021 1.462670 GGTTCAGCTTCGCTTCTTCTG 59.537 52.381 0.00 0.00 36.40 3.02
1166 1233 0.250901 GCTTCTTCTTGCCCCTGTCA 60.251 55.000 0.00 0.00 0.00 3.58
1207 1274 1.333931 GCCTAAGCGAATAAGGTTGGC 59.666 52.381 0.00 0.00 38.00 4.52
1232 1302 1.897225 GCTCTCCTTGCAGCCTGAGA 61.897 60.000 0.00 8.87 33.14 3.27
1247 1317 2.550180 CCTGAGAGCTTCATATCGTCGA 59.450 50.000 0.00 0.00 34.68 4.20
1326 1399 3.322466 CGGCAGTGAGAACCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
1328 1401 1.920835 GGCAGTGAGAACCCCCTCT 60.921 63.158 0.00 0.00 34.38 3.69
1329 1402 1.492993 GGCAGTGAGAACCCCCTCTT 61.493 60.000 0.00 0.00 34.38 2.85
1334 1410 2.001838 GAGAACCCCCTCTTCCCCC 61.002 68.421 0.00 0.00 0.00 5.40
1350 1597 1.705002 CCCCCGGCTATGGATGAACA 61.705 60.000 0.00 0.00 0.00 3.18
1354 1601 2.224621 CCCGGCTATGGATGAACAGAAT 60.225 50.000 0.00 0.00 0.00 2.40
1356 1603 3.885297 CCGGCTATGGATGAACAGAATTT 59.115 43.478 0.00 0.00 0.00 1.82
1384 1637 0.673437 GTTGCCTGCCTTTTGTGCTA 59.327 50.000 0.00 0.00 0.00 3.49
1386 1639 0.110295 TGCCTGCCTTTTGTGCTAGA 59.890 50.000 0.00 0.00 0.00 2.43
1387 1640 0.523519 GCCTGCCTTTTGTGCTAGAC 59.476 55.000 0.00 0.00 0.00 2.59
1389 1642 1.808945 CCTGCCTTTTGTGCTAGACTG 59.191 52.381 0.00 0.00 0.00 3.51
1390 1643 1.198637 CTGCCTTTTGTGCTAGACTGC 59.801 52.381 0.00 0.00 0.00 4.40
1391 1644 1.202806 TGCCTTTTGTGCTAGACTGCT 60.203 47.619 0.00 0.00 0.00 4.24
1392 1645 2.038426 TGCCTTTTGTGCTAGACTGCTA 59.962 45.455 0.00 0.00 0.00 3.49
1393 1646 2.675348 GCCTTTTGTGCTAGACTGCTAG 59.325 50.000 0.00 0.00 45.63 3.42
1394 1647 3.866449 GCCTTTTGTGCTAGACTGCTAGT 60.866 47.826 0.00 0.00 44.84 2.57
1398 1651 3.081710 TGTGCTAGACTGCTAGTGGTA 57.918 47.619 0.00 0.00 44.84 3.25
1505 1762 9.921637 ATACTTAGCTGCTTCAAATATCTACTC 57.078 33.333 7.79 0.00 0.00 2.59
1506 1763 6.920758 ACTTAGCTGCTTCAAATATCTACTCG 59.079 38.462 7.79 0.00 0.00 4.18
1541 1798 7.559170 GGGAGTAGTTAACTGATTACTAGGACA 59.441 40.741 18.56 0.00 39.07 4.02
1542 1799 9.134055 GGAGTAGTTAACTGATTACTAGGACAT 57.866 37.037 18.56 0.00 39.07 3.06
1617 1878 9.436866 AGAGAAGATATATAGCATCATCCATGT 57.563 33.333 6.06 0.00 34.56 3.21
1618 1879 9.478768 GAGAAGATATATAGCATCATCCATGTG 57.521 37.037 6.06 0.00 34.56 3.21
1619 1880 8.990203 AGAAGATATATAGCATCATCCATGTGT 58.010 33.333 6.06 0.00 34.56 3.72
1620 1881 9.258826 GAAGATATATAGCATCATCCATGTGTC 57.741 37.037 0.07 0.00 34.56 3.67
1621 1882 8.315220 AGATATATAGCATCATCCATGTGTCA 57.685 34.615 0.07 0.00 34.56 3.58
1622 1883 8.765517 AGATATATAGCATCATCCATGTGTCAA 58.234 33.333 0.07 0.00 34.56 3.18
1623 1884 8.728337 ATATATAGCATCATCCATGTGTCAAC 57.272 34.615 0.00 0.00 34.56 3.18
1639 1900 3.449377 TGTCAACTGTCAACTCACTGGTA 59.551 43.478 0.00 0.00 0.00 3.25
1657 1918 2.222027 GTAACAAGAGGCAGCAGTGTT 58.778 47.619 0.00 1.23 36.45 3.32
1658 1919 1.767759 AACAAGAGGCAGCAGTGTTT 58.232 45.000 0.00 0.00 0.00 2.83
1668 1933 3.501950 GCAGCAGTGTTTAATACCTTGC 58.498 45.455 0.00 0.00 36.12 4.01
1671 1936 4.917415 CAGCAGTGTTTAATACCTTGCAAC 59.083 41.667 0.00 0.00 37.48 4.17
1672 1937 4.022329 AGCAGTGTTTAATACCTTGCAACC 60.022 41.667 0.00 0.00 37.48 3.77
1673 1938 4.261825 GCAGTGTTTAATACCTTGCAACCA 60.262 41.667 0.00 0.00 36.00 3.67
1674 1939 5.219633 CAGTGTTTAATACCTTGCAACCAC 58.780 41.667 0.00 0.00 0.00 4.16
1675 1940 4.890581 AGTGTTTAATACCTTGCAACCACA 59.109 37.500 0.00 0.00 0.00 4.17
1678 1943 5.361285 TGTTTAATACCTTGCAACCACAACT 59.639 36.000 0.00 0.00 0.00 3.16
1682 1947 1.064758 ACCTTGCAACCACAACTCTGA 60.065 47.619 0.00 0.00 0.00 3.27
1687 1952 2.618241 TGCAACCACAACTCTGAATGAC 59.382 45.455 0.00 0.00 0.00 3.06
1688 1953 2.618241 GCAACCACAACTCTGAATGACA 59.382 45.455 0.00 0.00 0.00 3.58
1689 1954 3.548818 GCAACCACAACTCTGAATGACAC 60.549 47.826 0.00 0.00 0.00 3.67
1692 1957 2.221749 CCACAACTCTGAATGACACACG 59.778 50.000 0.00 0.00 0.00 4.49
1693 1958 3.123050 CACAACTCTGAATGACACACGA 58.877 45.455 0.00 0.00 0.00 4.35
1695 1960 4.923281 CACAACTCTGAATGACACACGATA 59.077 41.667 0.00 0.00 0.00 2.92
1696 1961 5.405269 CACAACTCTGAATGACACACGATAA 59.595 40.000 0.00 0.00 0.00 1.75
1697 1962 5.635280 ACAACTCTGAATGACACACGATAAG 59.365 40.000 0.00 0.00 0.00 1.73
1703 1968 6.366061 TCTGAATGACACACGATAAGTTCAAG 59.634 38.462 0.00 0.00 0.00 3.02
1704 1969 6.220201 TGAATGACACACGATAAGTTCAAGA 58.780 36.000 0.00 0.00 0.00 3.02
1706 1971 6.893958 ATGACACACGATAAGTTCAAGATC 57.106 37.500 0.00 0.00 0.00 2.75
1709 1974 3.000322 CACACGATAAGTTCAAGATCGCC 60.000 47.826 5.82 0.00 44.90 5.54
1711 1976 2.159282 ACGATAAGTTCAAGATCGCCGT 60.159 45.455 5.82 0.00 44.90 5.68
1712 1977 2.858344 CGATAAGTTCAAGATCGCCGTT 59.142 45.455 0.00 0.00 36.41 4.44
1908 2197 1.033574 TTTTAATTATGCCGCCCCCG 58.966 50.000 0.00 0.00 0.00 5.73
2222 2556 2.280628 GCCTATGAAAGAGGAACCGTG 58.719 52.381 0.00 0.00 35.99 4.94
2242 2576 5.685511 CCGTGTTTCTTCAGGTAAATTGTTG 59.314 40.000 0.00 0.00 0.00 3.33
2506 2847 3.384467 AGAAAATGGGGTGAACACTTGTG 59.616 43.478 4.96 0.00 0.00 3.33
2732 3080 9.369672 ACCAGATTACCTTATTGTTACCAAAAA 57.630 29.630 0.00 0.00 33.44 1.94
2740 3089 8.088365 ACCTTATTGTTACCAAAAATTGCTCTC 58.912 33.333 0.00 0.00 33.44 3.20
2775 3124 4.083324 ACGATACATTGTTGCTGGAAGTTG 60.083 41.667 0.00 0.00 35.30 3.16
2837 3186 4.038271 TCATTCTTTGCTCCCATCTTGT 57.962 40.909 0.00 0.00 0.00 3.16
2896 3330 1.228552 TTCCTCTTTGGCCACCTGC 60.229 57.895 3.88 0.00 40.16 4.85
2958 3392 5.604650 CCTGGAGGAACTGGATAAGTAAGAT 59.395 44.000 0.00 0.00 41.55 2.40
3003 3451 1.143620 CTCTGCTACCTCTGCTGGC 59.856 63.158 0.00 0.00 0.00 4.85
3010 3458 4.154347 CCTCTGCTGGCGACCTCC 62.154 72.222 0.00 0.00 0.00 4.30
3018 3466 0.467384 CTGGCGACCTCCTTGATCAT 59.533 55.000 0.00 0.00 0.00 2.45
3086 3534 7.416817 CGTTGAAATGCAGATGGAATTACATA 58.583 34.615 2.23 0.00 0.00 2.29
3090 3538 9.358406 TGAAATGCAGATGGAATTACATAATCT 57.642 29.630 2.23 0.00 0.00 2.40
3091 3539 9.837525 GAAATGCAGATGGAATTACATAATCTC 57.162 33.333 2.23 0.00 0.00 2.75
3111 3559 5.012239 TCTCATGGATTAATATGCAAGGGC 58.988 41.667 0.00 0.00 35.61 5.19
3180 3929 7.606839 GGCAGGTCTATACTTGTTAAAGTTTCT 59.393 37.037 0.00 0.00 44.47 2.52
3245 3994 7.282585 TGGACCTATAATTTCCAGTTGATGAG 58.717 38.462 0.00 0.00 34.35 2.90
3280 4029 4.161942 TCATTTACCAATTTCCATGGGCTG 59.838 41.667 13.02 4.20 42.48 4.85
3304 4053 4.341487 ACAAAGATAGTAAAACAGGGGGC 58.659 43.478 0.00 0.00 0.00 5.80
3381 4249 5.687285 GGTAAAACTCTTTGCAGTTCATGTG 59.313 40.000 0.00 0.00 35.45 3.21
3397 4265 6.760770 AGTTCATGTGTAAACCCAAAACAATG 59.239 34.615 0.00 0.00 0.00 2.82
3405 4273 9.915629 GTGTAAACCCAAAACAATGTAATGATA 57.084 29.630 0.00 0.00 0.00 2.15
3434 4302 8.389779 TCATAAAACTCTTTGCAGTTCATGTA 57.610 30.769 0.00 0.00 35.45 2.29
3440 4308 9.846248 AAACTCTTTGCAGTTCATGTATAAATC 57.154 29.630 0.00 0.00 35.45 2.17
3441 4309 8.798859 ACTCTTTGCAGTTCATGTATAAATCT 57.201 30.769 0.00 0.00 0.00 2.40
3442 4310 9.890629 ACTCTTTGCAGTTCATGTATAAATCTA 57.109 29.630 0.00 0.00 0.00 1.98
3448 4316 9.665719 TGCAGTTCATGTATAAATCTAACTTGA 57.334 29.630 0.00 0.00 0.00 3.02
3462 4330 8.950208 AATCTAACTTGAAGGAGTATTGTAGC 57.050 34.615 0.00 0.00 0.00 3.58
3463 4331 7.719871 TCTAACTTGAAGGAGTATTGTAGCT 57.280 36.000 0.00 0.00 0.00 3.32
3464 4332 8.135382 TCTAACTTGAAGGAGTATTGTAGCTT 57.865 34.615 0.00 0.00 0.00 3.74
3465 4333 8.594550 TCTAACTTGAAGGAGTATTGTAGCTTT 58.405 33.333 0.00 0.00 0.00 3.51
3466 4334 9.220767 CTAACTTGAAGGAGTATTGTAGCTTTT 57.779 33.333 0.00 0.00 0.00 2.27
3467 4335 8.465273 AACTTGAAGGAGTATTGTAGCTTTTT 57.535 30.769 0.00 0.00 0.00 1.94
3500 4368 7.317722 ACTTATCTATAGTAGCCCCAAAAGG 57.682 40.000 0.00 0.00 0.00 3.11
3501 4369 6.850231 ACTTATCTATAGTAGCCCCAAAAGGT 59.150 38.462 0.00 0.00 0.00 3.50
3502 4370 7.350124 ACTTATCTATAGTAGCCCCAAAAGGTT 59.650 37.037 0.00 0.00 0.00 3.50
3503 4371 6.592207 ATCTATAGTAGCCCCAAAAGGTTT 57.408 37.500 0.00 0.00 0.00 3.27
3504 4372 7.701257 ATCTATAGTAGCCCCAAAAGGTTTA 57.299 36.000 0.00 0.00 0.00 2.01
3505 4373 7.513560 TCTATAGTAGCCCCAAAAGGTTTAA 57.486 36.000 0.00 0.00 0.00 1.52
3506 4374 7.341030 TCTATAGTAGCCCCAAAAGGTTTAAC 58.659 38.462 0.00 0.00 0.00 2.01
3507 4375 4.464652 AGTAGCCCCAAAAGGTTTAACT 57.535 40.909 0.00 0.00 0.00 2.24
3508 4376 4.149598 AGTAGCCCCAAAAGGTTTAACTG 58.850 43.478 0.00 0.00 0.00 3.16
3509 4377 3.322191 AGCCCCAAAAGGTTTAACTGA 57.678 42.857 0.00 0.00 0.00 3.41
3510 4378 3.856900 AGCCCCAAAAGGTTTAACTGAT 58.143 40.909 0.00 0.00 0.00 2.90
3511 4379 3.578282 AGCCCCAAAAGGTTTAACTGATG 59.422 43.478 0.00 0.00 0.00 3.07
3512 4380 3.864540 GCCCCAAAAGGTTTAACTGATGC 60.865 47.826 0.00 0.00 0.00 3.91
3513 4381 3.323403 CCCCAAAAGGTTTAACTGATGCA 59.677 43.478 0.00 0.00 0.00 3.96
3514 4382 4.020307 CCCCAAAAGGTTTAACTGATGCAT 60.020 41.667 0.00 0.00 0.00 3.96
3515 4383 5.170748 CCCAAAAGGTTTAACTGATGCATC 58.829 41.667 20.14 20.14 0.00 3.91
3516 4384 5.170748 CCAAAAGGTTTAACTGATGCATCC 58.829 41.667 23.67 6.46 0.00 3.51
3517 4385 5.170748 CAAAAGGTTTAACTGATGCATCCC 58.829 41.667 23.67 14.96 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.694535 TTTTTGGTGACGTTAACGCAT 57.305 38.095 27.07 9.49 44.43 4.73
30 31 7.778470 ATATAGCAAAATATCGCTTCTAGGC 57.222 36.000 0.00 0.00 39.70 3.93
33 34 9.890629 ATGGAATATAGCAAAATATCGCTTCTA 57.109 29.630 0.00 0.00 39.70 2.10
77 78 4.865905 TGATGGTTGTATGTATTGGCCTT 58.134 39.130 3.32 0.00 0.00 4.35
80 81 4.400884 TGGTTGATGGTTGTATGTATTGGC 59.599 41.667 0.00 0.00 0.00 4.52
85 86 5.105957 GCATTGTGGTTGATGGTTGTATGTA 60.106 40.000 0.00 0.00 0.00 2.29
104 105 4.781959 CAGCGCCCGGTTGCATTG 62.782 66.667 16.43 4.32 0.00 2.82
119 121 2.128853 AACGGTTTGCGCATGACCAG 62.129 55.000 30.82 25.90 32.95 4.00
122 124 2.132402 CAAACGGTTTGCGCATGAC 58.868 52.632 19.49 13.63 33.36 3.06
135 137 4.091424 GCTTCTAAGTTAGCATGCAAACG 58.909 43.478 21.98 1.27 37.35 3.60
168 170 9.135189 TCTTCCAAAAATTCTTCAGAAGATGAA 57.865 29.630 13.86 0.00 45.79 2.57
169 171 8.571336 GTCTTCCAAAAATTCTTCAGAAGATGA 58.429 33.333 13.86 0.13 40.05 2.92
170 172 8.574737 AGTCTTCCAAAAATTCTTCAGAAGATG 58.425 33.333 13.86 8.49 40.05 2.90
171 173 8.703378 AGTCTTCCAAAAATTCTTCAGAAGAT 57.297 30.769 13.86 0.00 40.05 2.40
172 174 8.525290 AAGTCTTCCAAAAATTCTTCAGAAGA 57.475 30.769 8.95 8.95 37.48 2.87
175 177 9.627123 TCTTAAGTCTTCCAAAAATTCTTCAGA 57.373 29.630 1.63 0.00 0.00 3.27
198 200 8.807948 TTCAGTAGCCAAATTAAGCTAATCTT 57.192 30.769 10.12 0.00 42.92 2.40
232 246 9.737427 TCACTAATCTTACTGAATTCGAGATTC 57.263 33.333 20.15 11.20 37.94 2.52
241 255 9.757227 GCATCTAACTCACTAATCTTACTGAAT 57.243 33.333 0.00 0.00 0.00 2.57
252 266 8.560355 TGCTTATTTTGCATCTAACTCACTAA 57.440 30.769 0.00 0.00 35.31 2.24
262 276 7.067372 TGTTACATAGCTGCTTATTTTGCATCT 59.933 33.333 7.79 0.00 39.86 2.90
308 346 2.717639 AGCACTGTATCCATGGGAAC 57.282 50.000 13.02 11.02 34.34 3.62
311 349 3.822735 CCATTTAGCACTGTATCCATGGG 59.177 47.826 13.02 0.00 0.00 4.00
323 361 8.629158 TGATATCATTTAACACCCATTTAGCAC 58.371 33.333 0.00 0.00 0.00 4.40
324 362 8.759481 TGATATCATTTAACACCCATTTAGCA 57.241 30.769 0.00 0.00 0.00 3.49
352 399 1.745087 ACGGCATGATTGTTCCATGAC 59.255 47.619 0.00 3.30 44.49 3.06
371 418 5.046231 AGGAAGATCAGACCCTAGTTTTGAC 60.046 44.000 0.00 0.00 0.00 3.18
383 430 7.159372 TGGTAAAACTACAAGGAAGATCAGAC 58.841 38.462 0.00 0.00 0.00 3.51
405 452 5.900123 AGCTTCCTGTGTAGTATTATCTGGT 59.100 40.000 0.00 0.00 0.00 4.00
417 464 9.899661 ACAATAATATAACAAGCTTCCTGTGTA 57.100 29.630 0.00 0.00 0.00 2.90
418 465 8.807948 ACAATAATATAACAAGCTTCCTGTGT 57.192 30.769 0.00 0.00 0.00 3.72
435 482 8.439993 ACCACATGTTAATGCGTACAATAATA 57.560 30.769 0.00 0.00 37.29 0.98
438 485 6.745159 AACCACATGTTAATGCGTACAATA 57.255 33.333 0.00 0.00 37.29 1.90
442 489 7.912383 ACTAATAACCACATGTTAATGCGTAC 58.088 34.615 0.00 0.00 42.51 3.67
445 492 9.381027 CATAACTAATAACCACATGTTAATGCG 57.619 33.333 0.00 0.00 42.51 4.73
450 497 9.961264 TTCCACATAACTAATAACCACATGTTA 57.039 29.630 0.00 0.00 43.35 2.41
452 499 7.067008 GCTTCCACATAACTAATAACCACATGT 59.933 37.037 0.00 0.00 0.00 3.21
453 500 7.417612 GCTTCCACATAACTAATAACCACATG 58.582 38.462 0.00 0.00 0.00 3.21
454 501 6.260050 CGCTTCCACATAACTAATAACCACAT 59.740 38.462 0.00 0.00 0.00 3.21
456 503 5.813672 TCGCTTCCACATAACTAATAACCAC 59.186 40.000 0.00 0.00 0.00 4.16
457 504 5.979993 TCGCTTCCACATAACTAATAACCA 58.020 37.500 0.00 0.00 0.00 3.67
458 505 5.050295 GCTCGCTTCCACATAACTAATAACC 60.050 44.000 0.00 0.00 0.00 2.85
461 508 5.047847 GTGCTCGCTTCCACATAACTAATA 58.952 41.667 0.00 0.00 32.37 0.98
462 509 3.871594 GTGCTCGCTTCCACATAACTAAT 59.128 43.478 0.00 0.00 32.37 1.73
464 511 2.232696 TGTGCTCGCTTCCACATAACTA 59.767 45.455 0.00 0.00 37.07 2.24
466 513 1.438651 TGTGCTCGCTTCCACATAAC 58.561 50.000 0.00 0.00 37.07 1.89
467 514 3.925453 TGTGCTCGCTTCCACATAA 57.075 47.368 0.00 0.00 37.07 1.90
520 568 2.202756 GTACCTCGCTGCTTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
688 741 2.044252 AGCTACTCCCGCCGAAGA 60.044 61.111 0.00 0.00 0.00 2.87
758 816 3.528370 CTCCGTAGTGCTCCCCGG 61.528 72.222 0.00 0.00 41.75 5.73
763 821 2.156098 CTATCTCCCTCCGTAGTGCTC 58.844 57.143 0.00 0.00 0.00 4.26
768 826 0.036448 TCGCCTATCTCCCTCCGTAG 59.964 60.000 0.00 0.00 0.00 3.51
770 828 1.228306 CTCGCCTATCTCCCTCCGT 60.228 63.158 0.00 0.00 0.00 4.69
776 834 1.243902 CACCTCTCTCGCCTATCTCC 58.756 60.000 0.00 0.00 0.00 3.71
777 835 1.243902 CCACCTCTCTCGCCTATCTC 58.756 60.000 0.00 0.00 0.00 2.75
780 838 0.757188 CACCCACCTCTCTCGCCTAT 60.757 60.000 0.00 0.00 0.00 2.57
781 839 1.379977 CACCCACCTCTCTCGCCTA 60.380 63.158 0.00 0.00 0.00 3.93
782 840 2.522198 ATCACCCACCTCTCTCGCCT 62.522 60.000 0.00 0.00 0.00 5.52
785 843 0.898320 ACAATCACCCACCTCTCTCG 59.102 55.000 0.00 0.00 0.00 4.04
787 845 0.987294 CCACAATCACCCACCTCTCT 59.013 55.000 0.00 0.00 0.00 3.10
789 847 1.136329 AGCCACAATCACCCACCTCT 61.136 55.000 0.00 0.00 0.00 3.69
790 848 0.251341 AAGCCACAATCACCCACCTC 60.251 55.000 0.00 0.00 0.00 3.85
791 849 0.540365 CAAGCCACAATCACCCACCT 60.540 55.000 0.00 0.00 0.00 4.00
863 925 5.401376 CACACAAATGAAATGACTGCTTCTG 59.599 40.000 0.00 0.00 0.00 3.02
871 933 4.612614 CGTAGCACACACAAATGAAATGAC 59.387 41.667 0.00 0.00 0.00 3.06
874 936 3.818210 TCCGTAGCACACACAAATGAAAT 59.182 39.130 0.00 0.00 0.00 2.17
875 937 3.206964 TCCGTAGCACACACAAATGAAA 58.793 40.909 0.00 0.00 0.00 2.69
889 951 1.227380 CAGTGCTGGGATCCGTAGC 60.227 63.158 24.99 24.99 37.93 3.58
957 1021 1.808411 TGGATTGAGGACGCAGAAAC 58.192 50.000 0.00 0.00 0.00 2.78
1166 1233 2.739996 CGCTGGGGGAGCTGAATCT 61.740 63.158 0.00 0.00 46.64 2.40
1195 1262 2.636768 GCACACAGCCAACCTTATTC 57.363 50.000 0.00 0.00 37.23 1.75
1207 1274 1.575576 GCTGCAAGGAGAGCACACAG 61.576 60.000 0.00 0.00 37.02 3.66
1232 1302 1.600663 CGCCTTCGACGATATGAAGCT 60.601 52.381 0.00 0.00 40.16 3.74
1313 1386 0.547954 GGGAAGAGGGGGTTCTCACT 60.548 60.000 0.00 0.00 36.30 3.41
1334 1410 2.620251 TTCTGTTCATCCATAGCCGG 57.380 50.000 0.00 0.00 0.00 6.13
1350 1597 2.159114 AGGCAACACGCAAACAAATTCT 60.159 40.909 0.00 0.00 45.17 2.40
1354 1601 1.080995 GCAGGCAACACGCAAACAAA 61.081 50.000 0.00 0.00 45.17 2.83
1356 1603 2.103934 GCAGGCAACACGCAAACA 59.896 55.556 0.00 0.00 45.17 2.83
1384 1637 4.319037 ACCTAACTACCACTAGCAGTCT 57.681 45.455 0.00 0.00 0.00 3.24
1386 1639 6.666546 TCATTAACCTAACTACCACTAGCAGT 59.333 38.462 0.00 0.00 0.00 4.40
1387 1640 7.108841 TCATTAACCTAACTACCACTAGCAG 57.891 40.000 0.00 0.00 0.00 4.24
1389 1642 8.782339 TTTTCATTAACCTAACTACCACTAGC 57.218 34.615 0.00 0.00 0.00 3.42
1392 1645 9.020731 CCAATTTTCATTAACCTAACTACCACT 57.979 33.333 0.00 0.00 0.00 4.00
1393 1646 9.016438 TCCAATTTTCATTAACCTAACTACCAC 57.984 33.333 0.00 0.00 0.00 4.16
1394 1647 9.016438 GTCCAATTTTCATTAACCTAACTACCA 57.984 33.333 0.00 0.00 0.00 3.25
1505 1762 2.198980 CTACTCCCTCCCTCCCCG 59.801 72.222 0.00 0.00 0.00 5.73
1506 1763 0.939698 TAACTACTCCCTCCCTCCCC 59.060 60.000 0.00 0.00 0.00 4.81
1573 1830 8.429493 TCTTCTCTGTGTTATTGAGCAATATG 57.571 34.615 3.96 0.00 33.71 1.78
1600 1861 6.653740 CAGTTGACACATGGATGATGCTATAT 59.346 38.462 0.00 0.00 35.15 0.86
1605 1866 2.751259 ACAGTTGACACATGGATGATGC 59.249 45.455 0.00 0.00 35.15 3.91
1617 1878 2.236146 ACCAGTGAGTTGACAGTTGACA 59.764 45.455 0.00 0.00 0.00 3.58
1618 1879 2.906354 ACCAGTGAGTTGACAGTTGAC 58.094 47.619 0.00 0.00 0.00 3.18
1619 1880 4.081365 TGTTACCAGTGAGTTGACAGTTGA 60.081 41.667 0.00 0.00 0.00 3.18
1620 1881 4.188462 TGTTACCAGTGAGTTGACAGTTG 58.812 43.478 0.00 0.00 0.00 3.16
1621 1882 4.481368 TGTTACCAGTGAGTTGACAGTT 57.519 40.909 0.00 0.00 0.00 3.16
1622 1883 4.161565 TCTTGTTACCAGTGAGTTGACAGT 59.838 41.667 0.00 0.00 0.00 3.55
1623 1884 4.693283 TCTTGTTACCAGTGAGTTGACAG 58.307 43.478 0.00 0.00 0.00 3.51
1639 1900 1.767759 AAACACTGCTGCCTCTTGTT 58.232 45.000 0.00 0.00 31.74 2.83
1657 1918 5.240623 CAGAGTTGTGGTTGCAAGGTATTAA 59.759 40.000 0.00 0.00 0.00 1.40
1658 1919 4.759693 CAGAGTTGTGGTTGCAAGGTATTA 59.240 41.667 0.00 0.00 0.00 0.98
1668 1933 3.627123 TGTGTCATTCAGAGTTGTGGTTG 59.373 43.478 0.00 0.00 0.00 3.77
1671 1936 2.221749 CGTGTGTCATTCAGAGTTGTGG 59.778 50.000 0.00 0.00 0.00 4.17
1672 1937 3.123050 TCGTGTGTCATTCAGAGTTGTG 58.877 45.455 0.00 0.00 0.00 3.33
1673 1938 3.452755 TCGTGTGTCATTCAGAGTTGT 57.547 42.857 0.00 0.00 0.00 3.32
1674 1939 5.635280 ACTTATCGTGTGTCATTCAGAGTTG 59.365 40.000 0.00 0.00 0.00 3.16
1675 1940 5.784177 ACTTATCGTGTGTCATTCAGAGTT 58.216 37.500 0.00 0.00 0.00 3.01
1678 1943 5.778862 TGAACTTATCGTGTGTCATTCAGA 58.221 37.500 0.00 0.00 0.00 3.27
1682 1947 6.035005 CGATCTTGAACTTATCGTGTGTCATT 59.965 38.462 0.00 0.00 38.12 2.57
1687 1952 3.000322 GGCGATCTTGAACTTATCGTGTG 60.000 47.826 0.00 0.00 43.33 3.82
1688 1953 3.187700 GGCGATCTTGAACTTATCGTGT 58.812 45.455 0.00 0.00 43.33 4.49
1689 1954 2.216488 CGGCGATCTTGAACTTATCGTG 59.784 50.000 0.00 0.00 43.33 4.35
1692 1957 3.617263 ACAACGGCGATCTTGAACTTATC 59.383 43.478 16.62 0.00 0.00 1.75
1693 1958 3.596214 ACAACGGCGATCTTGAACTTAT 58.404 40.909 16.62 0.00 0.00 1.73
1695 1960 1.878953 ACAACGGCGATCTTGAACTT 58.121 45.000 16.62 0.00 0.00 2.66
1696 1961 1.878953 AACAACGGCGATCTTGAACT 58.121 45.000 16.62 0.00 0.00 3.01
1697 1962 3.369756 TGATAACAACGGCGATCTTGAAC 59.630 43.478 16.62 3.60 0.00 3.18
1726 1991 7.714377 CACCTCATTCTAATAATCTCACAAGCT 59.286 37.037 0.00 0.00 0.00 3.74
1851 2137 5.063880 AGACTGAAAGAACGCAAAAGGTAT 58.936 37.500 0.00 0.00 37.43 2.73
1901 2190 0.036388 ATGAGTATTATGCGGGGGCG 60.036 55.000 0.00 0.00 0.00 6.13
1908 2197 6.572070 GCACATTGCTGCATGAGTATTATGC 61.572 44.000 1.84 2.65 41.56 3.14
1959 2248 4.843728 CTTTCAGCCTACCCAGTCAATAA 58.156 43.478 0.00 0.00 0.00 1.40
1961 2250 2.619074 GCTTTCAGCCTACCCAGTCAAT 60.619 50.000 0.00 0.00 34.48 2.57
2222 2556 7.931275 ACTCTCAACAATTTACCTGAAGAAAC 58.069 34.615 0.00 0.00 0.00 2.78
2506 2847 4.217118 ACACATTCCAAATCAGTCTTCAGC 59.783 41.667 0.00 0.00 0.00 4.26
2734 3082 9.764363 ATGTATCGTTTTTCTATAATGAGAGCA 57.236 29.630 0.00 0.00 0.00 4.26
2775 3124 6.537566 CGAATATCATACAATTAGTGCCAGC 58.462 40.000 0.00 0.00 0.00 4.85
2808 3157 3.490419 GGGAGCAAAGAATGATGATGTGC 60.490 47.826 0.00 0.00 0.00 4.57
2816 3165 4.038271 ACAAGATGGGAGCAAAGAATGA 57.962 40.909 0.00 0.00 0.00 2.57
2817 3166 4.219070 TCAACAAGATGGGAGCAAAGAATG 59.781 41.667 0.00 0.00 0.00 2.67
2818 3167 4.410099 TCAACAAGATGGGAGCAAAGAAT 58.590 39.130 0.00 0.00 0.00 2.40
2837 3186 6.149973 GTGATGTTCCAGACAATCAAGATCAA 59.850 38.462 0.00 0.00 42.62 2.57
2874 3308 1.499007 AGGTGGCCAAAGAGGAAGAAA 59.501 47.619 7.24 0.00 41.22 2.52
2896 3330 4.053295 CTGGCAAAACAGAAAATGTGGAG 58.947 43.478 0.00 0.00 43.00 3.86
2958 3392 3.758554 TCATGAGACATCACACTCGAAGA 59.241 43.478 0.00 0.00 38.57 2.87
3003 3451 3.801698 ACATCAATGATCAAGGAGGTCG 58.198 45.455 10.38 1.26 0.00 4.79
3010 3458 6.872020 AGCTTTTGGAAACATCAATGATCAAG 59.128 34.615 0.00 0.00 42.32 3.02
3086 3534 6.154021 GCCCTTGCATATTAATCCATGAGATT 59.846 38.462 12.25 12.25 42.01 2.40
3090 3538 4.738685 TGCCCTTGCATATTAATCCATGA 58.261 39.130 0.00 0.00 44.23 3.07
3111 3559 3.681593 TGTGCATTCATTTTCCCCTTG 57.318 42.857 0.00 0.00 0.00 3.61
3180 3929 2.345991 GCCGCCTACACTGACCAA 59.654 61.111 0.00 0.00 0.00 3.67
3220 3969 7.127186 TCTCATCAACTGGAAATTATAGGTCCA 59.873 37.037 0.00 0.00 39.14 4.02
3245 3994 5.890424 TTGGTAAATGATTCGGTTCCTTC 57.110 39.130 0.00 0.00 0.00 3.46
3280 4029 5.105877 GCCCCCTGTTTTACTATCTTTGTTC 60.106 44.000 0.00 0.00 0.00 3.18
3304 4053 0.801251 CTTGCTTCGCTGGAAAGAGG 59.199 55.000 0.00 0.00 0.00 3.69
3362 4230 6.265577 GTTTACACATGAACTGCAAAGAGTT 58.734 36.000 0.00 0.00 38.94 3.01
3381 4249 9.915629 TGTATCATTACATTGTTTTGGGTTTAC 57.084 29.630 0.00 0.00 33.37 2.01
3405 4273 7.715657 TGAACTGCAAAGAGTTTTATGAATGT 58.284 30.769 0.00 0.00 36.27 2.71
3439 4307 7.719871 AGCTACAATACTCCTTCAAGTTAGA 57.280 36.000 0.00 0.00 0.00 2.10
3440 4308 8.779354 AAAGCTACAATACTCCTTCAAGTTAG 57.221 34.615 0.00 0.00 0.00 2.34
3441 4309 9.569122 AAAAAGCTACAATACTCCTTCAAGTTA 57.431 29.630 0.00 0.00 0.00 2.24
3442 4310 8.465273 AAAAAGCTACAATACTCCTTCAAGTT 57.535 30.769 0.00 0.00 0.00 2.66
3474 4342 9.047947 CCTTTTGGGGCTACTATAGATAAGTAT 57.952 37.037 6.78 0.00 35.46 2.12
3475 4343 8.014859 ACCTTTTGGGGCTACTATAGATAAGTA 58.985 37.037 6.78 0.00 46.08 2.24
3476 4344 6.850231 ACCTTTTGGGGCTACTATAGATAAGT 59.150 38.462 6.78 0.00 46.08 2.24
3477 4345 7.317722 ACCTTTTGGGGCTACTATAGATAAG 57.682 40.000 6.78 2.21 46.08 1.73
3478 4346 7.701257 AACCTTTTGGGGCTACTATAGATAA 57.299 36.000 6.78 0.00 46.08 1.75
3479 4347 7.701257 AAACCTTTTGGGGCTACTATAGATA 57.299 36.000 6.78 0.00 46.08 1.98
3480 4348 6.592207 AAACCTTTTGGGGCTACTATAGAT 57.408 37.500 6.78 0.00 46.08 1.98
3481 4349 7.183293 AGTTAAACCTTTTGGGGCTACTATAGA 59.817 37.037 6.78 0.00 46.08 1.98
3482 4350 7.282450 CAGTTAAACCTTTTGGGGCTACTATAG 59.718 40.741 0.00 0.00 46.08 1.31
3483 4351 7.037442 TCAGTTAAACCTTTTGGGGCTACTATA 60.037 37.037 0.00 0.00 46.08 1.31
3484 4352 5.949952 CAGTTAAACCTTTTGGGGCTACTAT 59.050 40.000 0.00 0.00 46.08 2.12
3485 4353 5.073417 TCAGTTAAACCTTTTGGGGCTACTA 59.927 40.000 0.00 0.00 46.08 1.82
3486 4354 4.141111 TCAGTTAAACCTTTTGGGGCTACT 60.141 41.667 0.00 0.00 46.08 2.57
3487 4355 4.146564 TCAGTTAAACCTTTTGGGGCTAC 58.853 43.478 0.00 0.00 46.08 3.58
3488 4356 4.456662 TCAGTTAAACCTTTTGGGGCTA 57.543 40.909 0.00 0.00 46.08 3.93
3489 4357 3.322191 TCAGTTAAACCTTTTGGGGCT 57.678 42.857 0.00 0.00 46.08 5.19
3490 4358 3.864540 GCATCAGTTAAACCTTTTGGGGC 60.865 47.826 0.00 0.00 46.08 5.80
3491 4359 3.323403 TGCATCAGTTAAACCTTTTGGGG 59.677 43.478 0.00 0.00 46.08 4.96
3492 4360 4.599047 TGCATCAGTTAAACCTTTTGGG 57.401 40.909 0.00 0.00 46.08 4.12
3494 4362 5.170748 GGGATGCATCAGTTAAACCTTTTG 58.829 41.667 27.25 0.00 0.00 2.44
3495 4363 5.405935 GGGATGCATCAGTTAAACCTTTT 57.594 39.130 27.25 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.