>input_sequence_49384
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-----------------------ATGGCGGCGACGGCTGCGGCGTACAGCTGCTCGGCGGCGGCGGCGGCGCTGCCGTTC
CCGGGGAGCCCCTTCGCCCGTCGCTCGCCCCCGTCCCGCGTTCACCTCGCCTCCTCCAATCCCAAGCTCGGGAAGCCCGT
TCCCAGGTACGCTT---CTTCTTGCCCCTGTCAGATTCAGCTCCCCCAGCGACGCCTAAGCGAATAAGGTTGGCTGTGTG
CTCTCCTTGCAG---CCTGAGAGCTTCATATCGTCGAAGGCGACCGCATGTCCGCGCGTGCTCCAGCGAGGTTGATCCGG
---ACGCCTCGGCAGCGTCACCGGCAGTGAGAACCCCCTCTTC---CCCCCGGCTAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGATGAACAGAA
TTTGTT---TGCGTGTTGC---CTGCCTTTTGTGCTAGACTGCTAGTGGTAGTTAGGTTAATGAAAATTGGACTAGTTAA
CTATGGCAAGCGATTCTGCAAATGTTTGTGGATTTGGCAG----CAATATGAACTATACTTAGCTGCTTCAAATATCTAC
TCGGGGAGGGAGGGAGTAGTTAACTGATTACTAGGACATTTTTTTTTAATCTGGAATAAAAATTACCAACATATTG----
CTCAATAACACAGAGAAGATATATAGCATCATCCATGTGTCAACTGTCAACTCACTGGTAACAAGAGGCAGCAGTGTTT-
---AATACCTTGCAACCACAACTCTGAATGACACACGATAAGTTCAAGATCGCCGTTGTTATCAACCTTAA-----GCTT
GTGAG-ATTATTAGAATGAGGTGTGGTTTGC---------------CTTTTATGCACCGGTTCAGATCACTTGTTGAATG
CGCTTGTGCAATCCTAGTCCAGTTCAAATACAAATGCTAAACATATTATAGATGATATACCTTTTGCGTTCTTTCAGTCT
TGTACTTTTAGG---CATTTTAATTATGCCGCCCCCGCATAATACTCATGCAGCAATGTGCCCTTCAAAACTTGGCACAA
ACCATAGTTATTG-ACTGGGTAGGCTGAAA-GCTTAATGATGTAGATATTCATCCTTATATCATACTCCTATATATACTA
ACATAGGAAATTTTACTGTATGAAATCACACTTTGAAATTGAATCATCATAC----------------------------
---------------ATTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACCGTGTTTC
TTCAGGTAAATTGTTGAGAGTATTT--AT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGAC
CTTACCTGCCTACCGCACTCTTTTTTTAAAAGTATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTG
TTCATTACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTGCTGAAGACTGA----------------------
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-----------------------------------------------------------------
>chr1B_1_TraesCS1B01G081400
GTAAACCATGCGTTAACGTCACCAAAAAACGCCTAGAAGCGATATTTTGCTATATTCCATTATCATTATCACCAACAAAG
GCCAATACATACAACCATCAACCACAATG-CAACCGGGCGCTGGTCATGCGCAAACCGTTTGCATGCTAACTTAGAAGCA
AAACGTGGCTTCATCTTCTGAAGAATTTTTGGAAGACTTAAGATTAGCTTAAT---TTGGCTACTGAAGC---------T
TCTTCGAATCTCGAATTCAGTAAGATTAGTGAGTTAGATGCAAAATAAGCAGCTATGTAA--------------------
----CAGACTGTTTCAACAGTCACAGTTCCCATGGATACAGTGCTAAA---------TGGGTGTTAAATGATATCATTGT
CATGGAACAATCATGCCGTCAAAACTAGGGTCTGATCTTCCTTGTAGTTTTACCAGATAATACTACACAGGAAGCTTGTT
ATATTATTGTACGCATTAACATGTGGTTATTAGTTATGTGGAAGCGAGCACATAATGCATCCCATCCGGGATGGCATTGG
GG-GGAACGGGAAGCAGCGAGGTACACACCTTGCAGCTTGCGCAC-----GGGGAGGGCGAGGGCGGGCTCCTCCCCGCC
GTAGATGTGCCGGAGGCGGTGCGCCCGCGGCCCCCGGGCGTGGCGGCGGCGGCGGCCGGTTCCCGCTCGATGATGCGGAG
CCGGGTTGCCCCGTAGGCGGTCTTCGGCGGGAGTAGCTG-----GGGAAGGGAAGGGGCGCGCTTGGCAGTAGATCTGGA
GCAGCGCCGCCGCCGCCGGGGAGCACTACGGAGGGAGATAGGCGAGAGA----GGTGGGTGATTGTGGCTTGAAGGAGGA
GGACGGCGGAAGCAAATTCACCAAAGACGAGGGACCTCTTTGCACAGAAGCAGTCATTTCATTTGTGTGTGC--TACGGA
TCCCAGCACTGCAATCTGTGCCATTCATCTTCAATCCAACGGTTCAGCTTCGCTTCTTCTGTTTCTGCGTCCTCAATCCA
ATCCAGTAGCCACCGGCCGGCCGATGGCGGCGACGGCTGCGGCGTACAGCTGCTCGGCGGCGGCGGCGGCGCTGCCGTTC
CCGGGGAGCCCCTTCGCCCGTCGCTCGCCCCCGTCCCGCGTTCACCTCGCCTCCTCCAATCCCAAGCTCGGGAAGCCCGT
TCCCAGGTACGCTT---CTTCTTGCCCCTGTCAGATTCAGCTCCCCCAGCGACGCCTAAGCGAATAAGGTTGGCTGTGTG
CTCTCCTTGCAG---CCTGAGAGCTTCATATCGTCGAAGGCGACCGCATGTCCGCGCGTGCTCCAGCGAGGTTGATCCGG
---ACGCCTCGGCAGCGTCACCGGCAGTGAGAACCCCCTCTTC---CCCCCGGCTAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGATGAACAGAA
TTTGTT---TGCGTGTTGC---CTGCCTTTTGTGCTAGACTGCTAGTGGTAGTTAGGTTAATGAAAATTGGACTAGTTAA
CTATGGCAAGCGATTCTGCAAATGTTTGTGGATTTGGCAG----CAATATGAACTATACTTAGCTGCTTCAAATATCTAC
TCGGGGAGGGAGGGAGTAGTTAACTGATTACTAGGACATTTTTTTTTAATCTGGAATAAAAATTACCAACATATTG----
CTCAATAACACAGAGAAGATATATAGCATCATCCATGTGTCAACTGTCAACTCACTGGTAACAAGAGGCAGCAGTGTTT-
---AATACCTTGCAACCACAACTCTGAATGACACACGATAAGTTCAAGATCGCCGTTGTTATCAACCTTAA-----GCTT
GTGAG-ATTATTAGAATGAGGTGTGGTTTGC---------------CTTTTATGCACCGGTTCAGATCACTTGTTGAATG
CGCTTGTGCAATCCTAGTCCAGTTCAAATACAAATGCTAAACATATTATAGATGATATACCTTTTGCGTTCTTTCAGTCT
TGTACTTTTAGG---CATTTTAATTATGCCGCCCCCGCATAATACTCATGCAGCAATGTGCCCTTCAAAACTTGGCACAA
ACCATAGTTATTG-ACTGGGTAGGCTGAAA-GCTTAATGATGTAGATATTCATCCTTATATCATACTCCTATATATACTA
ACATAGGAAATTTTACTGTATGAAATCACACTTTGAAATTGAATCATCATAC----------------------------
---------------ATTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACCGTGTTTC
TTCAGGTAAATTGTTGAGAGTATTT--AT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGAC
CTTACCTGCCTACCGCACTCTTTTTTTAAAAGTATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTG
TTCATTACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTGCTGAAGACTGATTTGGAAT-GTGTCA-TAGAAG
CCAGGCATGCTAAGTTTCCTCTAAATATACTAGGTTTGAGTCTTGACAACATTGACTATTTGAACCTTGTAGACTGCTTA
TATTGAACAGTATTTGTGCATTGAAATAGCAGCT-----TACTCAGTTCATAACTGGGTTTATATGGACTCAAATAGTAT
CACAATTCACAATACCAGATTACCTTATTGTTACCAAAAATTG-CTCTCATTATAGAAAAACGATACATTGTTGCTGGAA
GTTGCTGGCACTAATTGTATGATATTCGCACTGTATGCACATCATCATTCTTTGCTCCCATCTTGTTG---ATCTTGATT
GTCTGGAACATCACTT----------------------------------------------------------------
-----TTT-------------TCTCTTTTTCTTCCTCTTTGGCCACCTGCTCCACATTTTCTGTTTTGCCAGCGCCATCT
TTCTTTCCCTGGAGGAACTGGATAAGTAAGATCTTCGAGTGTGATGTCT--------------CATGAGCACCTCTGCTA
CCTCTGCTGGCGACCTCCTTGATCATTGATGTTTCCAAAAGCTCTTGGCTACCAGAATATGCTACTCCCGTTGAAATGCA
GATGGAATTACATAATCTCATGGATTAATATGCAAGGGCAAGGGGAAAATGAATGCACAAGTAGACTACA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TACATACCTAAGGCAGGTCTATACTTGTT
AAAGTTTCTTGGTCAGTGTAGGCGGCGCACACTCTGGCGGTGTTGCCATGGACCTATAATTTCCAGTTGATGAGAAGGAA
CCGAATCATTTACCAATTTCCATGGGCTGAACAAAGATAGTAAAACAGGGGGCCTCTTTCCAGCG---------------
--------------------------------------------------------------------------------
------------------------AAGCAAGTGTGCACCAGTCCTTTTTAGTACAGAAAATCATGGTAAAACTCTTTGCA
GTTCATGTGTAAACCCAAAACAATGTAATGATACATTCATAAAACTCTTTGCAGTTCATGTATAAATCTAACTTGAAGGA
GTATTGTAGCTTTTTTTGTAAATACTTATCTATAGTAGCCCCAAAAGGTTTAACTGATGCATCCC
>chr1A_1
GTAAACCG-GCGTTAGCATCACCAAAAAACACCGAGAAGCCACATTTTGCTATATTCCATTATCATTATCACCAACATAG
ACCAACACATACAACCATCAACCGACAATACAACCGGGTGGTGCTCATGCGCAAACTGTTTGCATGCTAACT---AAGCA
AAATGTGG---------CTGAAGAATTTTTGGAAGATTTGAGATTACCTTAATAATTTGGCTACTGGAGAATGCTCGTTT
TCTTCAAATCTCGAGTTCAGTAAGACTAGTGAGTTGGATGCAAAATAAGCAGCTATGTAAACCTAGAGTGCAGGAGCTAT
GTAACAGGCTGTTTCAACAGTCACATTTGCCATGGATACAACACTAAATAAATAGGTTGGGTGTTAAACAATATCATTAT
CATGGAACAATCATGCCATCAAAACTAGGATCTGATCTTCCTTGTAGTTTTGCCAGATAT------ACAGGAGGCTTGTT
ACATGATTATATGCATCATGGTCATGTATTAACATGTGGT--AGCGAGCACATAATGCATCCCATCCGGAATGGCATTGG
GG-GGAAGGGGAAGCAGCGAGGTACCCACCTTGCAGCTTGCGCGCGAGCAGGGCAGGGAGAGCTCCT-------CCCGCC
GTAGATGTGTCGGAGGCGGTGCGCCCGCGGCCCCCGGGCGTGGCGGCGGCGGCGGCCGGTTCCCGTTCGATGATGTGGGG
CCGGGTTGCCCCGTAGGCGGCCTTCGGCGGGAGTAGTTGGGGAAGGGAAGGGAAGGGGTGCGCTTGGCCGTAGATCTGGA
GCAGCGCCGCCGCCGTCGGGAAGCAGTGCGGAGATAGGCGGGAGTGGTGGCCTGGTGGGTGATTGTGGCTTGAAGGAGGA
GGATGGCGGAAGCAAATTCACCAAAGACGAGGGACCTCTTTGCATACAAGCATTCCCCTCATTTGCGTGTAC--TACGGA
TCCCAGCACTGCGATCTGTGCCATTCATCATCAATCCAACGGTCCAACTTCGCGTTTTCTATTTCTCCATCTTCAGTCCA
ATCCAGTAGCCACCGGCCGGCCGATGGCGACGACGGCTGCGGCGTACGGCTGCT---CGGCGGCGGCGGCGCTGCCGTTC
CCGGGGAGCCCCTTCACCCGTAGCTCACCCCCGTCACGAGTTCACGTCGCCTCCTCCAATCCCATGCCCGGGACGCCCGC
TCCCAGGTACTAGCTTGCTTCTTGCCCTTGTCGGATTCAGCTCCCCCAACGACGCCTGAGCTAATAAGGTTGGTTGTGTG
CTCTCCTTGCAGGAGCCTGAGGGTTTCATGTCGTCGTAGGCGACTGTATGTGTGTGCCTGCTCCGGCGAGGTTGGTCCGG
ACAACGCCTCGGCAGCGTCACCGGCGGTGAGAACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAT-----GAA
CTGGTTGTCTGCGTGTTGCCTG----------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------CCTTTTGTGCACCGGTTCAGATCACTTGTTGAATG
CGCTTATGCAATCCTATTCCAGTTCAAATACAAATGCTAAACGTATCATAGACGATGTACCTTTTGGGTTCTTTCAGTCT
TGTACTTTTAGG---CATTTTAATTATGCAGCCCCCACATAATACTCATGCAGCAATGTACTCTTCAAAACTTGGCACAA
ACCATAGCTTTTGAACTGGGTAGGCTGAAA-GCTTAATGATGTAGATATTCAT---TATACCATACTCCTATATA--CTA
AAATAGTAAATTGTACTGTATGAAATCACACTTTGAAATTGAATCGTCATACTGCGGATTAACCTGTTGTCTAGAATGGC
TTTAAAACAACATATGTTTCTTATCTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGT
GAAGTTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTC
TTCAGGTAAATTGTTCAGAGTATTT--AT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGAC
CTTATCTGCCTACCGCGCTCTCTTTTT--TAATATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTG
TTCATTACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTCA-TAGAAG
CCAGGCATGCTAAGTTTCCTTTAAATATACTAGGTTTGAGTTTTGACTACATTGACTATTTGAACCTTGTAGACTGCTTA
TATTGAACAGTATTTGTGCATTGAAATAGCAGCT-----TACTCAGTTCATAACTTGGTTTGTATGCACTCAAATTGTAT
CACAATTCACGATACCAGATTACCTTATTGTTACCAAAATTGATATCG--TTATAGAAAAACGATACATTGTTGCTGGAA
GTTCCTGGCACTAATTGTATGATATTCGCATTGTATACACATTA----------CTCCTATCTTGCTG---ATCTTGATT
GTCTGGAACATCACTTCTCTCTTGTTCTTCCTCTTTGGCCACCTGGTCCTCCTATCTTGCTGATCTTGATTGTCTGGAAC
ATCACTTC-------------TCTCTTGTTCTTCCTCTTTGGCCACCTGGTCCACATTTTCTGTTTTGCCAGCGCCATCT
TTCTTTCCCTGGAGGAACTGGATAAGTAAGACCTTCGAGTGTGATGTCTGTCTCTTCATTCCTCATGAGCACCTCTGCTA
TCTCTGCTGGAGACCTCTTTGATCACTGATGTTTCCAAAAGCTCTTGGCTACCAGAATATGCTACTCCTGTTGAAATGCA
GATGGAATTACATGATCAGATGGATTCATATGCAAGGGGAAGGGGAAAATGAATGCACAAGTAGACTACA----------
--------------------------------------------------------------------------------
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---------------------------------------------------TACATACTTAAGGCAGGTCTATACTTGTT
AAAGTTTCATGGTCAGTGTAGGCGGCGCACACTCCGGCAGTGTTGCCACGGACCTATAATTTCCAGTTGATGAAAAGGAA
CCGAATCATTTACCAATTTCGATGGGCTTAACAAAGATAGTAAAACAGGGGGGCTCTTTCCAGCG---------------
--------------------------------------------------------------------------------
------------------------AAGCAAGTGTGCACCAGTCCTTTTTAGTACAGGAAATCATGGTAAGACTCTTTGCA
GTTCATGTATAAACCCAAAACAATATAATGATCCATTCCTAAAACTCTTTGCAGTTCATGTGTAAA--------------
-----------------------------------------------------------------
>chr1D_470
ATGTG---------------------------------------------------------------------------
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-------------------------------------GGT--AGCGAGCGCATAATGCATCCCACCGGGAATGGCATTGG
GGAGGAAGGGAAAGCAGCGAGGTACCCACCTTGCAGCTTGCGCGC-----GGGCAGGGCGAGGGCGGGCTCCTCCCCGGC
GTAGATGTGCAGGAGGCGGTGCGCCCGCGGCCCCCGGGCGT---GGCGGCGGCGGCCGGTTCCCGCTCGATGATGTGGAG
CCCGGTTGCTCCGTAGGCGGCCTTCAGCGGGAGTAGCTGGGGAA------GGAAGGGACGCGCTTGGCAGTAGATCTGGA
GCGGCGCCGCCGCCGTCGGGAAGCAGTGCGGAGATAGGCGGGAGTGGTGG--------GTGATTGTGGCTGGAAGGAGGA
GGACGGCGGAAGCAAATTCACCTAAGACGAGGGACTTCTTTGCATAGAAGCACTCCCTCCCTCCCTCATTTCTGTACAGA
TACCAGCACTGCAATCTGTGCCGTTCATCTTTAATCCCACGGTCCAGCTTCGCTTCTTCTATTTCTGCGTCCTCAATCCA
ATCCAGTAGCCACCGGCCGGCCGATGGCGACGACGGCTGCGGCGTACGGCTGCT---CGGCGGCGCCGGCGCTTTCGCTC
CCGGGGAGCCCCTTCGCCCGTCGCTCGCCCCCGTCCCGCGTTCACCTCGCCTCCTCCAATCCCAAGCTCGGGAAGCCCGT
TCCCAGGT--GCTT---CTTCTTGCCCCAGTCGGATTCAGCTCCCCCAGCGATTGC-GAGCTAATAAGGTTGGTTGTGTG
CTCTC-TTGCAGCAGCCTGAGGGCTTCATATCGTCGTAGGCGACCGTATGTCTGCGCGTGCTCCGGCGAGGTTGGTCCAG
---ACGCCTCGGCGGCGTCACCGGCGGTGAGAACGCCGCCCCCCCTCCCTCGGCTAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGATGAACGGAA
CTGGTT---TGCGTGTTGC---CTGCCTTTTGTGCTCG-----C---GGTGTTTAGGTTAATGAAAATTGGGCTAGCTAA
TTACGGCAAGCGATTCTGCAAATGTTTGTGCATTTGGCAG----CAATATGAACTATACTTAGCTGCTTCAAATATCTAC
TTTGGGAAGGAGGGAGTAGTTAACTGATTACTAGGACTC-TTTTTTTAATCTGGAATAAAAATTACCAATGTATTG----
CTTAATAACACAGAGAAG--------------------------------------------------------------
-----------------------------------------------------------------------------CTT
GTGAG-GTTATTAGAATGAGGTGTGGTTTGC---------------CTTTTATGCACCGGTTCAGATCACCTGTTGAATA
CGCTTGTGCAATCCTAGTCCAGTTCAAATACAAATGCTAAACATATCGTAGATGATGTACCTTTTGCGTTCTTTCAGTCT
TGTACTTTTAGG---CATCTTCATTATGCAGCCCCCACACAATACTCATGCAGCAATGTGCCCTTCAAAACT---CACAA
ACCATAGCTTTTGAACTGGGTAGGCTGAAAAGCTTAATGATGTAGATATTTATCCTTATATCATACTCCTATATATACTA
ACATAGGAAATTGTATTGTATGAAATCACACTTTGAAATTGAATCATCATACTGTGGATTAACCTGTTGTCTAGAATGGC
TTTAAAACAACATGTGTTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACCGTTTTTC
TTCAGGTAAATTGTTCAGCGTGTTT--AT--TTACTTATTACATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGAC
CTTATCTGCCTACCGCGCTCTCTTTTTTTTAATATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTG
TTCATTACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGC-----GAAG
CCAGGCATGCTAGGTTTCCTCTA----------------GTTTTGACAACATTGATTATTGGAACCTTGTAGACTGCTTA
TATTGAACGATATTTGTGCATTGAAATAA---CT-----TACTCAGTTCATAACTGAGCTTACATGCACTCAA-TAGTAT
CACAGTGCACAGTACCAGATTATCTTATTGTTATCAAAATTGATCTCTTATTATAGCAAAATGATACATAGTTGCTGGAA
GTTCCTGGCACTAACTGTATGATATTCACACTATATACACATCA---TTCTTTGCTCCCATCTTGCTGGTTATCTTGATT
GTCTGGGACATCATTT----------------------------------------------------------------
-----TTTGTCATCATCTCTATCTCTTGTTCTTCCTCCTTGGCCACCTGGTCCACATTTTCTGTTTTGCCAGCACCATCT
TTCTTTCTCTTGAGGAACTGGATAAGTAAGACCTTCAAGTGCGATGTCTGTCACTTCGTTCCTCATGAGCACCTCTGCTA
CCTCTGCTGGAGACTGCTTATATTTCAATGCACAAATACTTGTAGACTGATTATTTGAACCTTGTAGACTGCTTATATTG
AACATTATTTGTGCATTCAAATAGCTTACTCAGTTCATAACTGAGTTTATATGCACTCAAATGGTATCACAGTTCACAAT
AGCAGATTATCTTATTGTTACCAAAATTGATCTCATATTATAGTAAAATGATATATTGTTGCTGGAAGTTCTTCGATTTA
GTTGTATGATATTCACACTGTATACACATCAATCATTTTTTGTCTGGGACATCACTTTCCGTCCTCATCTCTTTCTCTTG
TTCTTCCTCGCTCCTTAGGCATAGAAATAATATGCAGCCATTAGGCTTTATTTTAGGACAAATGAGAATGACGCTGATAA
TTATTTAGTTGTCTCACATATTGCATATGTCTAACGAAAGTAGACAAAAGCTTCACATCTGACACAAGTATATACTTAAT
AAGCAGTTATTATCCTACCGAGTTGCACTACTATTAATGTTCATAATAAATTCACTATCACTAACGAACATAATCAGCTT
TATTGAAGCAATATGCATATCCTATTATAATACTCCCTCCGTCCAAACATACTTGTCTTTACAATGAATAAAAAGGGATG
TATCTAGAACTAAAATACGTCTACATCTCCTTTTATTCATCTTGATGACAAGTACTTCCGGACGGAGGGAGTATTTGGCA
ACCGATCATAAACAGTAAGGAGCAAAGCAAGTGCGCACCAGTCCTTTTTAGTACAGAAAATCATG---------------
--------------------------------------------------------------------------------
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>chr7A_1188
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-----------------------------------------------------GCCTAAGTTAATAAGGTTGGTTGTGTG
CCCTCCTTGCAGCAACCTGAGGGTTTCATGTCATCGTAGAAGACTGTATGTTCGTGCGTGCAATAGCGAGGTTGATCCGG
---ACGGCTCGGCAGCGTCACCGGCGGTGAGAACCCCCCTCCC---TTCGCGGTTAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGAT-----GAA
CTGGTT---TGCGTGTTACCTGCTGCCTTTTGTGCTCGTGTTGC---GGTGGTTAGGTTAATGAAAATTGAACTAGTTAA
CTATGGTAAGCGATTCTACAATTGTTTGTGGATCTGGCAGGAAGCAGTATGAACCTAGTTTAGCTGATTCACATAACTAC
TACTCTAGTTAATAATA---------ATTACTAGGAC------TTTAAATCTGAAATAAAAATTACCAATATACGTACAA
CTTAATAACATAG---AGATGTATAACATCATCCATG-------TGTCAACTCACTGGTCACAAGAGGCAGCAGTGTACA
AACAATACCTTGTAAAGCAGACCCTGGATGATGTACACTT--TTCAATGTGGCTGCCGTTATCAACCTTATTATACGCTT
GTGAACATTATTAGAATGAGGTGTGGTTTGCTAGCACCAGCAGTTCCTTTTATGCACCGGTTCAGATCACTTGCTGGATA
CGCTTGTGCAATCCTATTCCAGTTCAAATAGAAACGCTAAACATATCATAAATGATGCACCTTTTGCATTCTTCCAGTCT
TGTATTTTTAGGAAGCATTTTAA---------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_2078
--------------------------------------------------------------------------------
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-----------------------------------------------CATAC----------------------------
---------------ATTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTAATAAATGTGATGCAAGGACAAAACGTTTGATAAACAGGGTGGGCTATGAAAGAGGAACAGTTTTTC
TTCAGGTAAATTGTTCAGTGTGTTT--AT--TTACTTAAT---TTGTACAGCCAACAGCTTTGCTTATATTAGTACGGAC
CTTATCTGCCTACCGCTCTCTTTTTTAGTATTA---AAACAAGACCATGTCTATGCTCATTTATTTTCGGAGATATGCTG
TTCATTATTTTCTAACATGCACTGCACACACAGTGTGCAGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGTCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGTGTGAACACTTGTACTGAAGACTGATTTGGAGAAGTGTTATTAGAAG
CCAGACATGCTAAGTTTCCTCTAAAAACATTAGGTTTGAGTCTTGACAAAATTGATTATTTCAACCTTGTTGACTGCTTA
TATTGAACAGTATTTCTGCATTGAAATAA---CTACCAATACTGAGTTCATAACTGGGTTTATATGCACTCAAATAGTAT
AACTGTTCACAATACCAGATTATTTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCTCGAA
GTTCCTGGCACTAATTGTATGATATTCACACTGTATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTCATT
ATCTGGGACATCACTT----------------------------------------------------------------
-----TTCGTCATCATCTCCTTCTCTTGTTCTTCCTCCTTCGCCACCTGGTCCACATTTTCCGGTTTGCCAGCGCCATCT
TTCTTTCTCTTGAGGAACTGGATAAG------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr3B_2078
--------------------------------------------------------------------------------
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-----------------------------------------------CATAC----------------------------
---------------GTTTCTTATGTCATATTGCAGGAAGCTAGTTTTGATATAAAGCTGCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTAATAAATGTGATGCAAGGACAAAACGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTC
TTCAGGTAAATTGTTCAGTGTGTTT--ATATTTACTTAAT---TTGTACAGCCAGCAGCTTTGCTTATATTAGTACGGAC
CTTATCTGCCTACCACTCTCTTTTTTTATATTA---AAACAAGACCATGTCTGTGCTCATTTATTTTGTGAGATATACTG
CTTATTATTTTCTAACATGCACTGCACACACAGTGCGCAGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGTCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTTATTAGAAG
CCAGACATGCTAAGTTTCCTCTAAAAACATTAGGTTTGAGTCTTGACA-----GATTATTTGAACCTTGTAGACTGCTTA
TATTGAACAGTATTTCTGCATTGAAATAG---CTACCAATACTCATTTCATAACTGGGTTTATATGCACTCAAATAGTAT
AACTGTGCACAATACCAGATTATCTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCTCGAA
GTTTCTGGCACTAATTGTATGATATTCGCACTAAATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTGATT
GTCTGGAACATCACTT----------------------------------------------------------------
-----TGTGCCATCATCTCTTTCTCTTGTTCTTCCTCCTTCGCTACCTGGTCCACATTTTCCGGTTTGCCAGCACCATCT
TTCTTTCTCTTGAGGAACTGGATAAG------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr3A_2080
--------------------------------------------------------------------------------
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-------------------------------------------------TAC----------------------------
---------------GTTTCTTATGTGATATCGCAGGAAGCTAGTTTTGATATAAAGCTGCCTAGAAGAAGCTTGCTTGT
TCAGTTTACATGTAATAAATGTGACGCAAGGACAAAACGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTC
TTCAGGTAAATTGTTCAGTGTGTTTATAT--TTACTTAAT---TTGTACAGCCAGCAGCTTTGCTTATATTAGTACGGAC
CTTATCTGCCTACCACTCTCTTTTTTAATATTA---AAACAAGACCATGTCTATGCTCATTTATTTTCTGAGATATGCTG
CTCATTATTTTCTAACATGCACTGCACACACAGTGCGCAGGGTGCCAAGTGTATCACAAGTTTGTTGACAATCTTGGTCT
AATTGTCGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTTATTAGAAG
CCAGACATGCTAAGTTTCCTTTAAAATCATTAGGTTTGAGTCTTGACAAAATTGATTATTTGAATCTTGTAGACTGCTTA
TATTGAACAGTATTTCTGCATTGAAATAG---CTACCAATACTCATTTCATAACTGGGTTAATATGCATTCAAATGGTAT
AACTGTTCACAATACCAGATTATCTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCCCGAA
GTTCCTGGCACTAATTGTACGATATTCGCACTGTATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTGATT
GTCTGGAACATCACTT----------------------------------------------------------------
-----TTTGTCATCATCTCTTTCTCTTGTTCTTCCTCCTTTGCTACCTGGTCCACATTTTCCTGTTTGCCAGCGCCATCT
TTCTTTCTCTTGAGGAACTGGATAAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>SNPs
-------SS------S-S------------S--S------S-S----------------------------------S--
S----S-----------------SSS-SS---------S-S--S------------S---------------SSS-----
---S----SSSSSSSSS-------------------S--S------S-------------------S--S----------
-----S--------S----------S---------S--------------------------------------------
-------S-----------------S--S-----------SSS-------------------------SS--------S-
-----------------S-----------S---------------------S-------SSSSSSS------S-------
-S--S---S--S----S-SSS-SSS--SS-S-SS-S--SSSS---------------------------S----------
-------S-----------------S-----------------S---------S--------------------------
---------------------------------------------------------------------------S----
--------------------S-----------------------------------------------------------
---------------S----S----S-S-----SS--SSS--S-S-SSS-------------------------------
--------------------------------------------S-------S--SS-------------S---------
-------------------------------------------S----------------S-------------------
-----------------------------S-----------------S------SSS-----------------------
--------------------------------------------------------------------------------
--------------------------------S----------------------------S-----------S------
---------------------S--------------S---------S---------------------------------
-------------------------S------------S-SS-------S------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
S-S---------------------------------S-SS-SSSSSS---S-----------------------------
--------------------------------------------------------------------------------
-SS----------------------------------SSS-----------------------------S----------
--S-----------------S----S-----------SSSSSSS---------------S-----------------SS-
------------S--SSSSS--S---S----SSS--SS-SSS-----SS-S--S-SS-------------S---------
--------------------------------------------------------------------------------
----------------------------------------------S---------S-----------------------
-----------------------------S------S-------------------------------------------
-------S-S----------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------S----------------------------------------------------------------
----S-----------S-----------S--S------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------S-SS-----S-------------------------------
---S--------------------------------S-------SSS------------------S--------------
--------------------------------------------------------------------------------
---------------------------S---------------------S------------------------------
-------------------------------S------------------------------------------------
----------S------S-------S------------------------------------------------------
-------------S---SS-------S-----------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S---------------------------------------S------------------------S------
----------------------------S-----------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------S---------------S-------S-----S----------------------S----SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CTACGGAGGGAGATAGGCGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2190
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CGCCCCCGCATAATACTCAT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_1639
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TGCCTGCCTTTTGTGCTAGA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_4053
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CCTCTTTCCAGCGAAGCAAG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
