Multiple sequence alignment - TraesCS1B01G065000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G065000 chr1B 100.000 2513 0 0 1 2513 49428904 49431416 0.000000e+00 4641.0
1 TraesCS1B01G065000 chr1B 94.396 1499 43 12 513 2010 49016112 49017570 0.000000e+00 2265.0
2 TraesCS1B01G065000 chr1B 98.950 476 2 3 2040 2513 403401778 403402252 0.000000e+00 848.0
3 TraesCS1B01G065000 chr1B 100.000 173 0 0 2752 2924 49431655 49431827 1.310000e-83 320.0
4 TraesCS1B01G065000 chr1B 98.266 173 3 0 2752 2924 403402336 403402508 1.320000e-78 303.0
5 TraesCS1B01G065000 chr1B 92.437 119 5 3 1 117 49015675 49015791 1.800000e-37 167.0
6 TraesCS1B01G065000 chr1B 100.000 33 0 0 2008 2040 447180498 447180466 8.750000e-06 62.1
7 TraesCS1B01G065000 chr1B 86.792 53 7 0 463 515 634867359 634867411 3.150000e-05 60.2
8 TraesCS1B01G065000 chr2D 92.755 1532 58 22 513 2010 22767134 22768646 0.000000e+00 2165.0
9 TraesCS1B01G065000 chr2A 95.231 1342 46 8 686 2010 24363635 24364975 0.000000e+00 2108.0
10 TraesCS1B01G065000 chr2A 97.895 475 6 4 2040 2512 719347911 719348383 0.000000e+00 819.0
11 TraesCS1B01G065000 chr2A 98.266 173 3 0 2752 2924 719348468 719348640 1.320000e-78 303.0
12 TraesCS1B01G065000 chr2A 91.489 141 4 3 1 138 24363366 24363501 1.380000e-43 187.0
13 TraesCS1B01G065000 chr2A 94.444 108 5 1 513 619 24363499 24363606 6.480000e-37 165.0
14 TraesCS1B01G065000 chr6B 98.529 476 5 2 2040 2513 639153 638678 0.000000e+00 839.0
15 TraesCS1B01G065000 chr6B 97.688 173 4 0 2752 2924 638594 638422 6.130000e-77 298.0
16 TraesCS1B01G065000 chr6B 88.776 196 17 5 2040 2231 560787929 560787735 4.870000e-58 235.0
17 TraesCS1B01G065000 chr6B 87.879 198 17 6 2040 2231 560690698 560690502 2.930000e-55 226.0
18 TraesCS1B01G065000 chr7A 98.529 476 4 3 2040 2513 129074907 129074433 0.000000e+00 837.0
19 TraesCS1B01G065000 chr7A 97.688 173 4 0 2752 2924 129074349 129074177 6.130000e-77 298.0
20 TraesCS1B01G065000 chr3A 98.643 442 3 3 2074 2513 184631411 184631851 0.000000e+00 780.0
21 TraesCS1B01G065000 chr3A 98.266 173 3 0 2752 2924 184631935 184632107 1.320000e-78 303.0
22 TraesCS1B01G065000 chr1A 98.417 379 6 0 137 515 71689435 71689057 0.000000e+00 667.0
23 TraesCS1B01G065000 chr2B 98.158 380 7 0 136 515 154507233 154507612 0.000000e+00 664.0
24 TraesCS1B01G065000 chr3B 98.153 379 7 0 137 515 641808745 641808367 0.000000e+00 662.0
25 TraesCS1B01G065000 chr3B 95.630 389 8 1 137 516 816618889 816619277 1.150000e-173 619.0
26 TraesCS1B01G065000 chr3B 87.342 158 17 2 2763 2920 809080997 809081151 8.330000e-41 178.0
27 TraesCS1B01G065000 chr5A 97.895 380 8 0 136 515 689647018 689647397 0.000000e+00 658.0
28 TraesCS1B01G065000 chr5A 74.240 559 121 17 1089 1637 531019330 531019875 2.280000e-51 213.0
29 TraesCS1B01G065000 chr4B 96.500 400 8 5 2040 2437 657155750 657156145 0.000000e+00 656.0
30 TraesCS1B01G065000 chr4B 94.737 380 9 1 136 515 652972716 652972348 5.430000e-162 580.0
31 TraesCS1B01G065000 chr4B 86.709 158 18 3 2763 2920 165040511 165040357 3.870000e-39 172.0
32 TraesCS1B01G065000 chr5B 97.105 380 11 0 136 515 659600742 659600363 2.460000e-180 641.0
33 TraesCS1B01G065000 chr5B 92.876 379 26 1 137 515 94776223 94775846 1.530000e-152 549.0
34 TraesCS1B01G065000 chr5B 74.373 558 122 17 1089 1637 504775459 504776004 4.910000e-53 219.0
35 TraesCS1B01G065000 chrUn 98.973 292 3 0 137 428 445361642 445361933 9.280000e-145 523.0
36 TraesCS1B01G065000 chrUn 86.792 53 7 0 463 515 350029268 350029216 3.150000e-05 60.2
37 TraesCS1B01G065000 chr1D 88.325 197 17 6 2040 2231 480637730 480637535 6.300000e-57 231.0
38 TraesCS1B01G065000 chr1D 87.342 158 17 2 2763 2920 480636915 480636761 8.330000e-41 178.0
39 TraesCS1B01G065000 chr7B 89.189 148 13 3 2773 2920 489773958 489773814 6.440000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G065000 chr1B 49428904 49431827 2923 False 2480.5 4641 100.000000 1 2924 2 chr1B.!!$F3 2923
1 TraesCS1B01G065000 chr1B 49015675 49017570 1895 False 1216.0 2265 93.416500 1 2010 2 chr1B.!!$F2 2009
2 TraesCS1B01G065000 chr1B 403401778 403402508 730 False 575.5 848 98.608000 2040 2924 2 chr1B.!!$F4 884
3 TraesCS1B01G065000 chr2D 22767134 22768646 1512 False 2165.0 2165 92.755000 513 2010 1 chr2D.!!$F1 1497
4 TraesCS1B01G065000 chr2A 24363366 24364975 1609 False 820.0 2108 93.721333 1 2010 3 chr2A.!!$F1 2009
5 TraesCS1B01G065000 chr2A 719347911 719348640 729 False 561.0 819 98.080500 2040 2924 2 chr2A.!!$F2 884
6 TraesCS1B01G065000 chr6B 638422 639153 731 True 568.5 839 98.108500 2040 2924 2 chr6B.!!$R3 884
7 TraesCS1B01G065000 chr7A 129074177 129074907 730 True 567.5 837 98.108500 2040 2924 2 chr7A.!!$R1 884
8 TraesCS1B01G065000 chr3A 184631411 184632107 696 False 541.5 780 98.454500 2074 2924 2 chr3A.!!$F1 850
9 TraesCS1B01G065000 chr5A 531019330 531019875 545 False 213.0 213 74.240000 1089 1637 1 chr5A.!!$F1 548
10 TraesCS1B01G065000 chr5B 504775459 504776004 545 False 219.0 219 74.373000 1089 1637 1 chr5B.!!$F1 548
11 TraesCS1B01G065000 chr1D 480636761 480637730 969 True 204.5 231 87.833500 2040 2920 2 chr1D.!!$R1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 660 0.031857 TGGTTGGTTGCATGCGAAAG 59.968 50.0 9.83 0.0 0.0 2.62 F
356 661 0.031994 GGTTGGTTGCATGCGAAAGT 59.968 50.0 9.83 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 2249 0.928505 ATCAGGCCCATCCATTGACA 59.071 50.000 0.0 0.0 37.29 3.58 R
2038 2389 2.991190 CGCACGGACATTTGTACTAGTT 59.009 45.455 0.0 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 8.540388 TGTATCTAGCTTTAGGATGTGTCTTTT 58.460 33.333 0.00 0.00 0.00 2.27
138 443 3.197983 ACCTTCAACCAGGAGCTATGTAC 59.802 47.826 0.00 0.00 37.39 2.90
139 444 3.452627 CCTTCAACCAGGAGCTATGTACT 59.547 47.826 0.00 0.00 35.71 2.73
146 451 1.249407 GGAGCTATGTACTCCCTCCG 58.751 60.000 0.00 0.00 46.81 4.63
147 452 1.479021 GGAGCTATGTACTCCCTCCGT 60.479 57.143 0.00 0.00 46.81 4.69
148 453 1.881324 GAGCTATGTACTCCCTCCGTC 59.119 57.143 0.00 0.00 0.00 4.79
149 454 0.960286 GCTATGTACTCCCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
150 455 1.236628 CTATGTACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
151 456 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
152 457 2.832201 GTACTCCCTCCGTCCGGG 60.832 72.222 0.00 0.00 43.38 5.73
153 458 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
154 459 2.922704 TACTCCCTCCGTCCGGGTT 61.923 63.158 0.00 0.00 42.56 4.11
155 460 2.445492 TACTCCCTCCGTCCGGGTTT 62.445 60.000 0.00 0.00 42.56 3.27
156 461 1.683365 CTCCCTCCGTCCGGGTTTA 60.683 63.158 0.00 0.00 42.56 2.01
157 462 1.002017 TCCCTCCGTCCGGGTTTAT 59.998 57.895 0.00 0.00 42.56 1.40
158 463 0.618393 TCCCTCCGTCCGGGTTTATT 60.618 55.000 0.00 0.00 42.56 1.40
159 464 0.463116 CCCTCCGTCCGGGTTTATTG 60.463 60.000 0.00 0.00 36.91 1.90
160 465 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
161 466 0.463116 CTCCGTCCGGGTTTATTGGG 60.463 60.000 0.00 0.00 37.00 4.12
162 467 2.116533 CCGTCCGGGTTTATTGGGC 61.117 63.158 0.00 0.00 0.00 5.36
163 468 1.078001 CGTCCGGGTTTATTGGGCT 60.078 57.895 0.00 0.00 0.00 5.19
164 469 0.678684 CGTCCGGGTTTATTGGGCTT 60.679 55.000 0.00 0.00 0.00 4.35
165 470 1.100510 GTCCGGGTTTATTGGGCTTC 58.899 55.000 0.00 0.00 0.00 3.86
166 471 0.996583 TCCGGGTTTATTGGGCTTCT 59.003 50.000 0.00 0.00 0.00 2.85
167 472 1.356398 TCCGGGTTTATTGGGCTTCTT 59.644 47.619 0.00 0.00 0.00 2.52
168 473 2.577105 TCCGGGTTTATTGGGCTTCTTA 59.423 45.455 0.00 0.00 0.00 2.10
169 474 2.949644 CCGGGTTTATTGGGCTTCTTAG 59.050 50.000 0.00 0.00 0.00 2.18
193 498 6.506464 CAAGTTTGCTCTGATCTGTTTTTG 57.494 37.500 0.00 0.00 0.00 2.44
194 499 5.841957 AGTTTGCTCTGATCTGTTTTTGT 57.158 34.783 0.00 0.00 0.00 2.83
195 500 6.942532 AGTTTGCTCTGATCTGTTTTTGTA 57.057 33.333 0.00 0.00 0.00 2.41
196 501 7.333528 AGTTTGCTCTGATCTGTTTTTGTAA 57.666 32.000 0.00 0.00 0.00 2.41
197 502 7.420800 AGTTTGCTCTGATCTGTTTTTGTAAG 58.579 34.615 0.00 0.00 0.00 2.34
198 503 5.947228 TGCTCTGATCTGTTTTTGTAAGG 57.053 39.130 0.00 0.00 0.00 2.69
199 504 4.216257 TGCTCTGATCTGTTTTTGTAAGGC 59.784 41.667 0.00 0.00 0.00 4.35
200 505 4.379918 GCTCTGATCTGTTTTTGTAAGGCC 60.380 45.833 0.00 0.00 0.00 5.19
201 506 4.079253 TCTGATCTGTTTTTGTAAGGCCC 58.921 43.478 0.00 0.00 0.00 5.80
202 507 3.161866 TGATCTGTTTTTGTAAGGCCCC 58.838 45.455 0.00 0.00 0.00 5.80
203 508 1.611519 TCTGTTTTTGTAAGGCCCCG 58.388 50.000 0.00 0.00 0.00 5.73
204 509 0.038618 CTGTTTTTGTAAGGCCCCGC 60.039 55.000 0.00 0.00 0.00 6.13
205 510 0.468400 TGTTTTTGTAAGGCCCCGCT 60.468 50.000 0.00 0.00 0.00 5.52
206 511 1.202903 TGTTTTTGTAAGGCCCCGCTA 60.203 47.619 0.00 0.00 0.00 4.26
207 512 1.887854 GTTTTTGTAAGGCCCCGCTAA 59.112 47.619 0.00 0.00 0.00 3.09
208 513 2.289592 TTTTGTAAGGCCCCGCTAAA 57.710 45.000 0.00 0.00 0.00 1.85
209 514 2.517998 TTTGTAAGGCCCCGCTAAAT 57.482 45.000 0.00 0.00 0.00 1.40
210 515 3.648507 TTTGTAAGGCCCCGCTAAATA 57.351 42.857 0.00 0.00 0.00 1.40
211 516 3.868619 TTGTAAGGCCCCGCTAAATAT 57.131 42.857 0.00 0.00 0.00 1.28
212 517 3.134574 TGTAAGGCCCCGCTAAATATG 57.865 47.619 0.00 0.00 0.00 1.78
213 518 1.810755 GTAAGGCCCCGCTAAATATGC 59.189 52.381 0.00 0.00 0.00 3.14
227 532 6.782150 GCTAAATATGCGTGTTTACTTTCCT 58.218 36.000 3.94 0.00 0.00 3.36
228 533 6.905609 GCTAAATATGCGTGTTTACTTTCCTC 59.094 38.462 3.94 0.00 0.00 3.71
229 534 5.464965 AATATGCGTGTTTACTTTCCTCG 57.535 39.130 0.00 0.00 0.00 4.63
230 535 2.512485 TGCGTGTTTACTTTCCTCGA 57.488 45.000 0.00 0.00 0.00 4.04
231 536 3.034721 TGCGTGTTTACTTTCCTCGAT 57.965 42.857 0.00 0.00 0.00 3.59
232 537 2.991190 TGCGTGTTTACTTTCCTCGATC 59.009 45.455 0.00 0.00 0.00 3.69
233 538 2.991190 GCGTGTTTACTTTCCTCGATCA 59.009 45.455 0.00 0.00 0.00 2.92
234 539 3.060895 GCGTGTTTACTTTCCTCGATCAG 59.939 47.826 0.00 0.00 0.00 2.90
235 540 3.060895 CGTGTTTACTTTCCTCGATCAGC 59.939 47.826 0.00 0.00 0.00 4.26
236 541 4.246458 GTGTTTACTTTCCTCGATCAGCT 58.754 43.478 0.00 0.00 0.00 4.24
237 542 4.327627 GTGTTTACTTTCCTCGATCAGCTC 59.672 45.833 0.00 0.00 0.00 4.09
238 543 3.802948 TTACTTTCCTCGATCAGCTCC 57.197 47.619 0.00 0.00 0.00 4.70
239 544 0.457851 ACTTTCCTCGATCAGCTCCG 59.542 55.000 0.00 0.00 0.00 4.63
240 545 0.873743 CTTTCCTCGATCAGCTCCGC 60.874 60.000 0.00 0.00 0.00 5.54
241 546 2.298158 TTTCCTCGATCAGCTCCGCC 62.298 60.000 0.00 0.00 0.00 6.13
242 547 4.637489 CCTCGATCAGCTCCGCCG 62.637 72.222 0.00 0.00 0.00 6.46
243 548 3.586961 CTCGATCAGCTCCGCCGA 61.587 66.667 0.00 0.00 0.00 5.54
244 549 3.534970 CTCGATCAGCTCCGCCGAG 62.535 68.421 9.08 9.08 40.28 4.63
257 562 3.112075 CCGAGCACGCACACGATT 61.112 61.111 0.00 0.00 43.93 3.34
258 563 2.094539 CGAGCACGCACACGATTG 59.905 61.111 0.00 0.00 43.93 2.67
259 564 2.476051 GAGCACGCACACGATTGG 59.524 61.111 0.00 0.00 43.93 3.16
260 565 3.027170 GAGCACGCACACGATTGGG 62.027 63.158 0.00 0.00 43.93 4.12
266 571 3.803082 CACACGATTGGGCTGCCG 61.803 66.667 13.40 2.93 0.00 5.69
267 572 4.329545 ACACGATTGGGCTGCCGT 62.330 61.111 13.40 3.65 35.46 5.68
268 573 3.055719 CACGATTGGGCTGCCGTT 61.056 61.111 13.40 0.00 32.50 4.44
269 574 2.282180 ACGATTGGGCTGCCGTTT 60.282 55.556 13.40 0.00 30.41 3.60
270 575 2.332654 ACGATTGGGCTGCCGTTTC 61.333 57.895 13.40 7.86 30.41 2.78
271 576 2.485122 GATTGGGCTGCCGTTTCG 59.515 61.111 13.40 0.00 0.00 3.46
281 586 2.399611 CCGTTTCGGCTTCATCGC 59.600 61.111 0.00 0.00 41.17 4.58
282 587 2.100631 CCGTTTCGGCTTCATCGCT 61.101 57.895 0.00 0.00 41.17 4.93
283 588 1.059369 CGTTTCGGCTTCATCGCTG 59.941 57.895 0.00 0.00 37.63 5.18
284 589 1.226128 GTTTCGGCTTCATCGCTGC 60.226 57.895 0.00 0.00 36.24 5.25
285 590 1.670730 TTTCGGCTTCATCGCTGCA 60.671 52.632 0.00 0.00 36.24 4.41
286 591 1.026182 TTTCGGCTTCATCGCTGCAT 61.026 50.000 0.00 0.00 36.24 3.96
287 592 1.708193 TTCGGCTTCATCGCTGCATG 61.708 55.000 0.00 3.21 36.24 4.06
288 593 2.025727 GGCTTCATCGCTGCATGC 59.974 61.111 11.82 11.82 38.57 4.06
297 602 2.650196 GCTGCATGCGGGAAAACA 59.350 55.556 27.34 0.00 0.00 2.83
298 603 1.444895 GCTGCATGCGGGAAAACAG 60.445 57.895 27.34 10.65 0.00 3.16
299 604 1.444895 CTGCATGCGGGAAAACAGC 60.445 57.895 19.33 0.00 40.96 4.40
306 611 2.046283 GCGGGAAAACAGCAAAGTAC 57.954 50.000 0.00 0.00 40.25 2.73
307 612 1.335597 GCGGGAAAACAGCAAAGTACC 60.336 52.381 0.00 0.00 40.25 3.34
308 613 1.950909 CGGGAAAACAGCAAAGTACCA 59.049 47.619 0.00 0.00 0.00 3.25
309 614 2.031157 CGGGAAAACAGCAAAGTACCAG 60.031 50.000 0.00 0.00 0.00 4.00
310 615 2.288213 GGGAAAACAGCAAAGTACCAGC 60.288 50.000 0.00 0.00 0.00 4.85
311 616 2.623416 GGAAAACAGCAAAGTACCAGCT 59.377 45.455 0.00 0.00 39.63 4.24
316 621 2.175878 AGCAAAGTACCAGCTGTGAG 57.824 50.000 13.81 0.00 37.20 3.51
317 622 0.519077 GCAAAGTACCAGCTGTGAGC 59.481 55.000 13.81 3.03 42.84 4.26
318 623 1.882912 CAAAGTACCAGCTGTGAGCA 58.117 50.000 13.81 0.00 45.56 4.26
319 624 2.221169 CAAAGTACCAGCTGTGAGCAA 58.779 47.619 13.81 0.00 45.56 3.91
320 625 2.816087 CAAAGTACCAGCTGTGAGCAAT 59.184 45.455 13.81 0.00 45.56 3.56
321 626 3.981071 AAGTACCAGCTGTGAGCAATA 57.019 42.857 13.81 0.00 45.56 1.90
322 627 3.981071 AGTACCAGCTGTGAGCAATAA 57.019 42.857 13.81 0.00 45.56 1.40
323 628 3.600388 AGTACCAGCTGTGAGCAATAAC 58.400 45.455 13.81 0.00 45.56 1.89
324 629 2.867109 ACCAGCTGTGAGCAATAACT 57.133 45.000 13.81 0.00 45.56 2.24
325 630 2.430465 ACCAGCTGTGAGCAATAACTG 58.570 47.619 13.81 0.00 45.56 3.16
333 638 2.023320 GCAATAACTGCCTCGCGC 59.977 61.111 0.00 0.00 46.13 6.86
334 639 2.464459 GCAATAACTGCCTCGCGCT 61.464 57.895 5.56 0.00 46.13 5.92
335 640 1.349627 CAATAACTGCCTCGCGCTG 59.650 57.895 5.56 0.00 41.91 5.18
343 648 4.988598 CCTCGCGCTGTGGTTGGT 62.989 66.667 5.56 0.00 0.00 3.67
344 649 2.972505 CTCGCGCTGTGGTTGGTT 60.973 61.111 5.56 0.00 0.00 3.67
345 650 3.240606 CTCGCGCTGTGGTTGGTTG 62.241 63.158 5.56 0.00 0.00 3.77
346 651 4.980903 CGCGCTGTGGTTGGTTGC 62.981 66.667 5.56 0.00 0.00 4.17
347 652 3.898509 GCGCTGTGGTTGGTTGCA 61.899 61.111 0.00 0.00 0.00 4.08
348 653 3.041701 CGCTGTGGTTGGTTGCAT 58.958 55.556 0.00 0.00 0.00 3.96
349 654 1.372004 CGCTGTGGTTGGTTGCATG 60.372 57.895 0.00 0.00 0.00 4.06
350 655 1.665599 GCTGTGGTTGGTTGCATGC 60.666 57.895 11.82 11.82 0.00 4.06
351 656 1.372004 CTGTGGTTGGTTGCATGCG 60.372 57.895 14.09 0.00 0.00 4.73
352 657 1.794151 CTGTGGTTGGTTGCATGCGA 61.794 55.000 14.09 8.74 0.00 5.10
353 658 1.361993 GTGGTTGGTTGCATGCGAA 59.638 52.632 9.83 3.73 0.00 4.70
354 659 0.249238 GTGGTTGGTTGCATGCGAAA 60.249 50.000 9.83 0.00 0.00 3.46
355 660 0.031857 TGGTTGGTTGCATGCGAAAG 59.968 50.000 9.83 0.00 0.00 2.62
356 661 0.031994 GGTTGGTTGCATGCGAAAGT 59.968 50.000 9.83 0.00 0.00 2.66
357 662 1.268352 GGTTGGTTGCATGCGAAAGTA 59.732 47.619 9.83 0.00 0.00 2.24
358 663 2.287909 GGTTGGTTGCATGCGAAAGTAA 60.288 45.455 9.83 0.00 0.00 2.24
359 664 3.376540 GTTGGTTGCATGCGAAAGTAAA 58.623 40.909 9.83 0.00 0.00 2.01
360 665 3.281341 TGGTTGCATGCGAAAGTAAAG 57.719 42.857 9.83 0.00 0.00 1.85
361 666 1.985684 GGTTGCATGCGAAAGTAAAGC 59.014 47.619 9.83 3.57 0.00 3.51
362 667 2.351738 GGTTGCATGCGAAAGTAAAGCT 60.352 45.455 9.83 0.00 33.38 3.74
363 668 2.617250 TGCATGCGAAAGTAAAGCTG 57.383 45.000 14.09 0.00 33.38 4.24
364 669 1.199789 TGCATGCGAAAGTAAAGCTGG 59.800 47.619 14.09 0.00 33.38 4.85
365 670 1.468054 GCATGCGAAAGTAAAGCTGGG 60.468 52.381 0.00 0.00 0.00 4.45
366 671 0.811281 ATGCGAAAGTAAAGCTGGGC 59.189 50.000 0.00 0.00 0.00 5.36
367 672 0.536233 TGCGAAAGTAAAGCTGGGCA 60.536 50.000 0.00 0.00 0.00 5.36
368 673 0.596082 GCGAAAGTAAAGCTGGGCAA 59.404 50.000 0.00 0.00 0.00 4.52
369 674 1.202348 GCGAAAGTAAAGCTGGGCAAT 59.798 47.619 0.00 0.00 0.00 3.56
370 675 2.352715 GCGAAAGTAAAGCTGGGCAATT 60.353 45.455 0.00 0.00 0.00 2.32
371 676 3.119637 GCGAAAGTAAAGCTGGGCAATTA 60.120 43.478 0.00 0.00 0.00 1.40
372 677 4.662145 CGAAAGTAAAGCTGGGCAATTAG 58.338 43.478 0.00 0.00 0.00 1.73
373 678 4.424626 GAAAGTAAAGCTGGGCAATTAGC 58.575 43.478 0.00 0.00 44.65 3.09
379 684 2.044123 GCTGGGCAATTAGCTACTGT 57.956 50.000 0.00 0.00 44.79 3.55
380 685 1.672881 GCTGGGCAATTAGCTACTGTG 59.327 52.381 0.00 0.00 44.79 3.66
381 686 2.680805 GCTGGGCAATTAGCTACTGTGA 60.681 50.000 0.00 0.00 44.79 3.58
382 687 3.201290 CTGGGCAATTAGCTACTGTGAG 58.799 50.000 0.00 0.00 44.79 3.51
383 688 2.092968 TGGGCAATTAGCTACTGTGAGG 60.093 50.000 0.00 0.00 44.79 3.86
384 689 1.943340 GGCAATTAGCTACTGTGAGGC 59.057 52.381 0.00 0.00 44.79 4.70
385 690 2.420687 GGCAATTAGCTACTGTGAGGCT 60.421 50.000 0.00 9.05 44.79 4.58
386 691 3.274288 GCAATTAGCTACTGTGAGGCTT 58.726 45.455 0.00 0.00 41.15 4.35
387 692 3.691609 GCAATTAGCTACTGTGAGGCTTT 59.308 43.478 0.00 0.00 41.15 3.51
388 693 4.437930 GCAATTAGCTACTGTGAGGCTTTG 60.438 45.833 0.00 9.61 41.15 2.77
389 694 3.334583 TTAGCTACTGTGAGGCTTTGG 57.665 47.619 0.00 0.00 37.50 3.28
390 695 1.352083 AGCTACTGTGAGGCTTTGGA 58.648 50.000 0.00 0.00 31.81 3.53
391 696 1.699634 AGCTACTGTGAGGCTTTGGAA 59.300 47.619 0.00 0.00 31.81 3.53
392 697 2.307098 AGCTACTGTGAGGCTTTGGAAT 59.693 45.455 0.00 0.00 31.81 3.01
393 698 3.519510 AGCTACTGTGAGGCTTTGGAATA 59.480 43.478 0.00 0.00 31.81 1.75
394 699 4.019321 AGCTACTGTGAGGCTTTGGAATAA 60.019 41.667 0.00 0.00 31.81 1.40
395 700 4.095036 GCTACTGTGAGGCTTTGGAATAAC 59.905 45.833 0.00 0.00 0.00 1.89
396 701 4.373156 ACTGTGAGGCTTTGGAATAACT 57.627 40.909 0.00 0.00 0.00 2.24
397 702 4.074970 ACTGTGAGGCTTTGGAATAACTG 58.925 43.478 0.00 0.00 0.00 3.16
398 703 2.819608 TGTGAGGCTTTGGAATAACTGC 59.180 45.455 0.00 0.00 0.00 4.40
399 704 2.819608 GTGAGGCTTTGGAATAACTGCA 59.180 45.455 0.00 0.00 0.00 4.41
400 705 3.084039 TGAGGCTTTGGAATAACTGCAG 58.916 45.455 13.48 13.48 0.00 4.41
401 706 3.244875 TGAGGCTTTGGAATAACTGCAGA 60.245 43.478 23.35 0.00 0.00 4.26
402 707 3.950395 GAGGCTTTGGAATAACTGCAGAT 59.050 43.478 23.35 12.06 0.00 2.90
403 708 4.347607 AGGCTTTGGAATAACTGCAGATT 58.652 39.130 23.35 10.83 0.00 2.40
404 709 5.509498 AGGCTTTGGAATAACTGCAGATTA 58.491 37.500 23.35 15.12 0.00 1.75
405 710 5.951747 AGGCTTTGGAATAACTGCAGATTAA 59.048 36.000 23.35 2.41 0.00 1.40
406 711 6.608808 AGGCTTTGGAATAACTGCAGATTAAT 59.391 34.615 23.35 8.41 0.00 1.40
407 712 6.920210 GGCTTTGGAATAACTGCAGATTAATC 59.080 38.462 23.35 16.01 0.00 1.75
408 713 7.201857 GGCTTTGGAATAACTGCAGATTAATCT 60.202 37.037 23.35 12.37 37.72 2.40
409 714 8.840321 GCTTTGGAATAACTGCAGATTAATCTA 58.160 33.333 23.35 12.29 34.85 1.98
415 720 9.617975 GAATAACTGCAGATTAATCTAATTGGC 57.382 33.333 23.35 15.87 34.85 4.52
416 721 8.930846 ATAACTGCAGATTAATCTAATTGGCT 57.069 30.769 23.35 4.39 34.85 4.75
417 722 6.630444 ACTGCAGATTAATCTAATTGGCTG 57.370 37.500 23.35 19.39 34.85 4.85
418 723 5.009410 ACTGCAGATTAATCTAATTGGCTGC 59.991 40.000 23.35 14.65 45.52 5.25
419 724 5.135383 TGCAGATTAATCTAATTGGCTGCT 58.865 37.500 17.53 0.00 45.52 4.24
420 725 5.009310 TGCAGATTAATCTAATTGGCTGCTG 59.991 40.000 17.53 3.47 45.52 4.41
421 726 5.458891 CAGATTAATCTAATTGGCTGCTGC 58.541 41.667 17.53 7.10 34.85 5.25
422 727 5.241064 CAGATTAATCTAATTGGCTGCTGCT 59.759 40.000 17.53 0.00 35.85 4.24
423 728 6.429078 CAGATTAATCTAATTGGCTGCTGCTA 59.571 38.462 17.53 6.53 35.85 3.49
424 729 6.429385 AGATTAATCTAATTGGCTGCTGCTAC 59.571 38.462 16.50 0.08 35.85 3.58
425 730 3.853355 ATCTAATTGGCTGCTGCTACT 57.147 42.857 15.64 0.26 39.59 2.57
426 731 3.634397 TCTAATTGGCTGCTGCTACTT 57.366 42.857 15.64 12.08 39.59 2.24
427 732 3.955471 TCTAATTGGCTGCTGCTACTTT 58.045 40.909 15.64 8.27 39.59 2.66
428 733 3.941483 TCTAATTGGCTGCTGCTACTTTC 59.059 43.478 15.64 0.00 39.59 2.62
429 734 2.205022 ATTGGCTGCTGCTACTTTCA 57.795 45.000 15.64 0.69 39.59 2.69
430 735 2.205022 TTGGCTGCTGCTACTTTCAT 57.795 45.000 15.64 0.00 39.59 2.57
431 736 3.348647 TTGGCTGCTGCTACTTTCATA 57.651 42.857 15.64 0.00 39.59 2.15
432 737 3.348647 TGGCTGCTGCTACTTTCATAA 57.651 42.857 15.64 0.00 39.59 1.90
433 738 3.273434 TGGCTGCTGCTACTTTCATAAG 58.727 45.455 15.64 0.00 39.59 1.73
434 739 3.274288 GGCTGCTGCTACTTTCATAAGT 58.726 45.455 15.64 0.00 40.75 2.24
435 740 3.311048 GGCTGCTGCTACTTTCATAAGTC 59.689 47.826 15.64 0.00 38.56 3.01
436 741 3.935203 GCTGCTGCTACTTTCATAAGTCA 59.065 43.478 8.53 0.00 43.45 3.41
437 742 4.201763 GCTGCTGCTACTTTCATAAGTCAC 60.202 45.833 8.53 0.00 43.45 3.67
438 743 3.926527 TGCTGCTACTTTCATAAGTCACG 59.073 43.478 0.00 0.00 43.45 4.35
439 744 3.307242 GCTGCTACTTTCATAAGTCACGG 59.693 47.826 0.00 0.00 43.45 4.94
440 745 4.744570 CTGCTACTTTCATAAGTCACGGA 58.255 43.478 0.00 0.00 43.45 4.69
441 746 5.339008 TGCTACTTTCATAAGTCACGGAT 57.661 39.130 0.00 0.00 43.45 4.18
442 747 5.109210 TGCTACTTTCATAAGTCACGGATG 58.891 41.667 0.00 0.00 43.45 3.51
443 748 4.508124 GCTACTTTCATAAGTCACGGATGG 59.492 45.833 0.00 0.00 43.45 3.51
444 749 4.553330 ACTTTCATAAGTCACGGATGGT 57.447 40.909 0.00 0.00 40.60 3.55
445 750 4.906618 ACTTTCATAAGTCACGGATGGTT 58.093 39.130 0.00 0.00 40.60 3.67
446 751 6.045072 ACTTTCATAAGTCACGGATGGTTA 57.955 37.500 0.00 0.00 40.60 2.85
447 752 5.873164 ACTTTCATAAGTCACGGATGGTTAC 59.127 40.000 0.00 0.00 40.60 2.50
448 753 4.395959 TCATAAGTCACGGATGGTTACC 57.604 45.455 0.00 0.00 0.00 2.85
449 754 3.770388 TCATAAGTCACGGATGGTTACCA 59.230 43.478 6.53 6.53 38.19 3.25
450 755 2.762535 AAGTCACGGATGGTTACCAG 57.237 50.000 10.74 0.00 36.75 4.00
451 756 1.640917 AGTCACGGATGGTTACCAGT 58.359 50.000 10.74 0.00 36.75 4.00
452 757 2.811410 AGTCACGGATGGTTACCAGTA 58.189 47.619 10.74 0.00 36.75 2.74
453 758 3.167485 AGTCACGGATGGTTACCAGTAA 58.833 45.455 10.74 0.00 36.75 2.24
454 759 3.773119 AGTCACGGATGGTTACCAGTAAT 59.227 43.478 10.74 0.00 36.75 1.89
455 760 4.957954 AGTCACGGATGGTTACCAGTAATA 59.042 41.667 10.74 0.00 36.75 0.98
456 761 5.601313 AGTCACGGATGGTTACCAGTAATAT 59.399 40.000 10.74 0.00 36.75 1.28
457 762 6.099269 AGTCACGGATGGTTACCAGTAATATT 59.901 38.462 10.74 0.00 36.75 1.28
458 763 6.423001 GTCACGGATGGTTACCAGTAATATTC 59.577 42.308 10.74 0.01 36.75 1.75
459 764 6.325545 TCACGGATGGTTACCAGTAATATTCT 59.674 38.462 10.74 0.00 36.75 2.40
460 765 6.990349 CACGGATGGTTACCAGTAATATTCTT 59.010 38.462 10.74 0.00 36.75 2.52
461 766 7.170998 CACGGATGGTTACCAGTAATATTCTTC 59.829 40.741 10.74 0.00 36.75 2.87
462 767 6.649557 CGGATGGTTACCAGTAATATTCTTCC 59.350 42.308 10.74 6.75 36.75 3.46
463 768 7.472945 CGGATGGTTACCAGTAATATTCTTCCT 60.473 40.741 10.74 0.00 36.75 3.36
464 769 8.218488 GGATGGTTACCAGTAATATTCTTCCTT 58.782 37.037 10.74 0.00 36.75 3.36
465 770 8.980481 ATGGTTACCAGTAATATTCTTCCTTG 57.020 34.615 10.74 0.00 36.75 3.61
466 771 7.343357 TGGTTACCAGTAATATTCTTCCTTGG 58.657 38.462 0.00 0.00 0.00 3.61
467 772 7.037153 TGGTTACCAGTAATATTCTTCCTTGGT 60.037 37.037 0.00 1.58 40.51 3.67
468 773 7.498239 GGTTACCAGTAATATTCTTCCTTGGTC 59.502 40.741 0.00 0.00 38.53 4.02
469 774 6.002653 ACCAGTAATATTCTTCCTTGGTCC 57.997 41.667 0.00 0.00 32.52 4.46
470 775 5.731678 ACCAGTAATATTCTTCCTTGGTCCT 59.268 40.000 0.00 0.00 32.52 3.85
471 776 6.126739 ACCAGTAATATTCTTCCTTGGTCCTC 60.127 42.308 0.00 0.00 32.52 3.71
472 777 5.986135 CAGTAATATTCTTCCTTGGTCCTCG 59.014 44.000 0.00 0.00 0.00 4.63
473 778 5.661759 AGTAATATTCTTCCTTGGTCCTCGT 59.338 40.000 0.00 0.00 0.00 4.18
474 779 2.770164 ATTCTTCCTTGGTCCTCGTG 57.230 50.000 0.00 0.00 0.00 4.35
475 780 0.034896 TTCTTCCTTGGTCCTCGTGC 59.965 55.000 0.00 0.00 0.00 5.34
476 781 1.376037 CTTCCTTGGTCCTCGTGCC 60.376 63.158 0.00 0.00 0.00 5.01
477 782 3.234630 TTCCTTGGTCCTCGTGCCG 62.235 63.158 0.00 0.00 0.00 5.69
478 783 4.003788 CCTTGGTCCTCGTGCCGT 62.004 66.667 0.00 0.00 0.00 5.68
479 784 2.738521 CTTGGTCCTCGTGCCGTG 60.739 66.667 0.00 0.00 0.00 4.94
480 785 4.308458 TTGGTCCTCGTGCCGTGG 62.308 66.667 8.75 8.75 41.16 4.94
483 788 3.755628 GTCCTCGTGCCGTGGCTA 61.756 66.667 12.84 0.00 39.87 3.93
484 789 2.992689 TCCTCGTGCCGTGGCTAA 60.993 61.111 12.84 0.00 39.87 3.09
485 790 2.813908 CCTCGTGCCGTGGCTAAC 60.814 66.667 12.84 1.74 42.51 2.34
486 791 2.048597 CTCGTGCCGTGGCTAACA 60.049 61.111 12.84 0.00 42.51 2.41
487 792 2.048597 TCGTGCCGTGGCTAACAG 60.049 61.111 12.84 0.53 42.51 3.16
488 793 2.048597 CGTGCCGTGGCTAACAGA 60.049 61.111 12.84 0.00 42.51 3.41
489 794 2.380410 CGTGCCGTGGCTAACAGAC 61.380 63.158 12.84 0.00 42.51 3.51
490 795 2.033194 GTGCCGTGGCTAACAGACC 61.033 63.158 12.84 0.00 42.51 3.85
491 796 2.436115 GCCGTGGCTAACAGACCC 60.436 66.667 2.98 0.00 38.26 4.46
492 797 3.065306 CCGTGGCTAACAGACCCA 58.935 61.111 0.00 0.00 0.00 4.51
493 798 1.373435 CCGTGGCTAACAGACCCAA 59.627 57.895 0.00 0.00 0.00 4.12
494 799 0.035439 CCGTGGCTAACAGACCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
495 800 1.208535 CCGTGGCTAACAGACCCAATA 59.791 52.381 0.00 0.00 0.00 1.90
496 801 2.355310 CCGTGGCTAACAGACCCAATAA 60.355 50.000 0.00 0.00 0.00 1.40
497 802 3.340034 CGTGGCTAACAGACCCAATAAA 58.660 45.455 0.00 0.00 0.00 1.40
498 803 3.126343 CGTGGCTAACAGACCCAATAAAC 59.874 47.826 0.00 0.00 0.00 2.01
499 804 3.442625 GTGGCTAACAGACCCAATAAACC 59.557 47.826 0.00 0.00 0.00 3.27
500 805 3.332485 TGGCTAACAGACCCAATAAACCT 59.668 43.478 0.00 0.00 0.00 3.50
501 806 3.694566 GGCTAACAGACCCAATAAACCTG 59.305 47.826 0.00 0.00 0.00 4.00
502 807 3.694566 GCTAACAGACCCAATAAACCTGG 59.305 47.826 0.00 0.00 0.00 4.45
503 808 4.566907 GCTAACAGACCCAATAAACCTGGA 60.567 45.833 0.00 0.00 35.85 3.86
504 809 3.434940 ACAGACCCAATAAACCTGGAC 57.565 47.619 0.00 0.00 35.85 4.02
505 810 2.290071 ACAGACCCAATAAACCTGGACG 60.290 50.000 0.00 0.00 35.85 4.79
506 811 1.280998 AGACCCAATAAACCTGGACGG 59.719 52.381 0.00 0.00 35.85 4.79
507 812 1.279846 GACCCAATAAACCTGGACGGA 59.720 52.381 0.00 0.00 35.85 4.69
508 813 1.280998 ACCCAATAAACCTGGACGGAG 59.719 52.381 0.00 0.00 35.85 4.63
509 814 1.408266 CCCAATAAACCTGGACGGAGG 60.408 57.143 0.00 0.00 35.85 4.30
510 815 1.408266 CCAATAAACCTGGACGGAGGG 60.408 57.143 0.00 0.00 37.45 4.30
511 816 1.557832 CAATAAACCTGGACGGAGGGA 59.442 52.381 0.00 0.00 37.45 4.20
512 817 1.497161 ATAAACCTGGACGGAGGGAG 58.503 55.000 0.00 0.00 37.45 4.30
513 818 0.115745 TAAACCTGGACGGAGGGAGT 59.884 55.000 0.00 0.00 37.45 3.85
514 819 0.115745 AAACCTGGACGGAGGGAGTA 59.884 55.000 0.00 0.00 37.45 2.59
515 820 0.324460 AACCTGGACGGAGGGAGTAG 60.324 60.000 0.00 0.00 37.45 2.57
516 821 2.128507 CCTGGACGGAGGGAGTAGC 61.129 68.421 0.00 0.00 33.16 3.58
517 822 2.043248 TGGACGGAGGGAGTAGCC 60.043 66.667 0.00 0.00 0.00 3.93
523 828 1.033574 CGGAGGGAGTAGCCACTAAG 58.966 60.000 0.00 0.00 38.95 2.18
554 859 1.066430 TGCTAGGTCCACCTTTTAGCG 60.066 52.381 2.90 0.00 46.09 4.26
624 933 2.515057 ACCAAAGGAACACGCGCA 60.515 55.556 5.73 0.00 0.00 6.09
655 964 4.505324 TCTACTTAGCTAGCTGTCCTGA 57.495 45.455 27.68 15.87 0.00 3.86
695 1010 1.663911 AGCCACCCCTTGTATACACA 58.336 50.000 4.68 0.00 0.00 3.72
781 1099 4.388080 TGCATTCGCTGTGCACGC 62.388 61.111 19.33 19.33 46.76 5.34
841 1162 1.135024 CCTGTTTTCCCATGCATTCCG 60.135 52.381 0.00 0.00 0.00 4.30
892 1224 5.893500 ACTCCTACCTTAGCTGCATCTATA 58.106 41.667 1.02 0.00 0.00 1.31
894 1226 7.644062 ACTCCTACCTTAGCTGCATCTATATA 58.356 38.462 1.02 0.00 0.00 0.86
961 1293 2.749621 GCCTTCAAGTTCCTACACCATG 59.250 50.000 0.00 0.00 0.00 3.66
999 1331 1.597854 CTCACTGCAAACCTCCGCA 60.598 57.895 0.00 0.00 36.52 5.69
1521 1865 3.175594 TGAAGGGTACAACCGGTTCTAT 58.824 45.455 19.24 8.74 39.83 1.98
1526 1870 0.526096 TACAACCGGTTCTATCGCGC 60.526 55.000 19.24 0.00 0.00 6.86
1826 2170 0.686441 TACTACGACCTGCTGCCCAT 60.686 55.000 0.00 0.00 0.00 4.00
1928 2272 1.072173 CAATGGATGGGCCTGATCGTA 59.928 52.381 4.53 0.00 37.63 3.43
2005 2356 4.092383 GTGTGTACGAATAAAACGGCATCT 59.908 41.667 0.00 0.00 34.93 2.90
2010 2361 8.371053 GTGTACGAATAAAACGGCATCTATATC 58.629 37.037 0.00 0.00 34.93 1.63
2011 2362 8.301720 TGTACGAATAAAACGGCATCTATATCT 58.698 33.333 0.00 0.00 34.93 1.98
2012 2363 9.136952 GTACGAATAAAACGGCATCTATATCTT 57.863 33.333 0.00 0.00 34.93 2.40
2013 2364 8.603242 ACGAATAAAACGGCATCTATATCTTT 57.397 30.769 0.00 0.00 34.93 2.52
2014 2365 9.701098 ACGAATAAAACGGCATCTATATCTTTA 57.299 29.630 0.00 0.00 34.93 1.85
2015 2366 9.953825 CGAATAAAACGGCATCTATATCTTTAC 57.046 33.333 0.00 0.00 0.00 2.01
2021 2372 9.654663 AAACGGCATCTATATCTTTACCTAATC 57.345 33.333 0.00 0.00 0.00 1.75
2022 2373 8.596781 ACGGCATCTATATCTTTACCTAATCT 57.403 34.615 0.00 0.00 0.00 2.40
2023 2374 9.036980 ACGGCATCTATATCTTTACCTAATCTT 57.963 33.333 0.00 0.00 0.00 2.40
2024 2375 9.877178 CGGCATCTATATCTTTACCTAATCTTT 57.123 33.333 0.00 0.00 0.00 2.52
2826 3353 8.646004 TGGATGTGAATGAAAACATTAAAAGGA 58.354 29.630 0.00 0.00 37.15 3.36
2827 3354 9.487790 GGATGTGAATGAAAACATTAAAAGGAA 57.512 29.630 0.00 0.00 37.15 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 3.118884 GGTACGAGCCCAGTCAAAGATTA 60.119 47.826 0.00 0.00 0.00 1.75
141 446 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
142 447 0.463116 CCCAATAAACCCGGACGGAG 60.463 60.000 13.13 5.04 37.50 4.63
143 448 1.603306 CCCAATAAACCCGGACGGA 59.397 57.895 13.13 0.00 37.50 4.69
144 449 2.116533 GCCCAATAAACCCGGACGG 61.117 63.158 0.73 3.25 37.81 4.79
145 450 0.678684 AAGCCCAATAAACCCGGACG 60.679 55.000 0.73 0.00 0.00 4.79
146 451 1.100510 GAAGCCCAATAAACCCGGAC 58.899 55.000 0.73 0.00 0.00 4.79
147 452 0.996583 AGAAGCCCAATAAACCCGGA 59.003 50.000 0.73 0.00 0.00 5.14
148 453 1.847328 AAGAAGCCCAATAAACCCGG 58.153 50.000 0.00 0.00 0.00 5.73
149 454 2.357952 GCTAAGAAGCCCAATAAACCCG 59.642 50.000 0.00 0.00 43.40 5.28
170 475 6.038356 ACAAAAACAGATCAGAGCAAACTTG 58.962 36.000 0.00 0.00 0.00 3.16
171 476 6.212888 ACAAAAACAGATCAGAGCAAACTT 57.787 33.333 0.00 0.00 0.00 2.66
172 477 5.841957 ACAAAAACAGATCAGAGCAAACT 57.158 34.783 0.00 0.00 0.00 2.66
173 478 6.638468 CCTTACAAAAACAGATCAGAGCAAAC 59.362 38.462 0.00 0.00 0.00 2.93
174 479 6.735694 GCCTTACAAAAACAGATCAGAGCAAA 60.736 38.462 0.00 0.00 0.00 3.68
175 480 5.278463 GCCTTACAAAAACAGATCAGAGCAA 60.278 40.000 0.00 0.00 0.00 3.91
176 481 4.216257 GCCTTACAAAAACAGATCAGAGCA 59.784 41.667 0.00 0.00 0.00 4.26
177 482 4.379918 GGCCTTACAAAAACAGATCAGAGC 60.380 45.833 0.00 0.00 0.00 4.09
178 483 4.156739 GGGCCTTACAAAAACAGATCAGAG 59.843 45.833 0.84 0.00 0.00 3.35
179 484 4.079253 GGGCCTTACAAAAACAGATCAGA 58.921 43.478 0.84 0.00 0.00 3.27
180 485 3.193479 GGGGCCTTACAAAAACAGATCAG 59.807 47.826 0.84 0.00 0.00 2.90
181 486 3.161866 GGGGCCTTACAAAAACAGATCA 58.838 45.455 0.84 0.00 0.00 2.92
182 487 2.163613 CGGGGCCTTACAAAAACAGATC 59.836 50.000 0.84 0.00 0.00 2.75
183 488 2.167662 CGGGGCCTTACAAAAACAGAT 58.832 47.619 0.84 0.00 0.00 2.90
184 489 1.611519 CGGGGCCTTACAAAAACAGA 58.388 50.000 0.84 0.00 0.00 3.41
185 490 0.038618 GCGGGGCCTTACAAAAACAG 60.039 55.000 0.84 0.00 0.00 3.16
186 491 0.468400 AGCGGGGCCTTACAAAAACA 60.468 50.000 0.84 0.00 0.00 2.83
187 492 1.536940 TAGCGGGGCCTTACAAAAAC 58.463 50.000 0.84 0.00 0.00 2.43
188 493 2.289592 TTAGCGGGGCCTTACAAAAA 57.710 45.000 0.84 0.00 0.00 1.94
189 494 2.289592 TTTAGCGGGGCCTTACAAAA 57.710 45.000 0.84 0.00 0.00 2.44
190 495 2.517998 ATTTAGCGGGGCCTTACAAA 57.482 45.000 0.84 0.00 0.00 2.83
191 496 3.482436 CATATTTAGCGGGGCCTTACAA 58.518 45.455 0.84 0.00 0.00 2.41
192 497 2.812613 GCATATTTAGCGGGGCCTTACA 60.813 50.000 0.84 0.00 0.00 2.41
193 498 1.810755 GCATATTTAGCGGGGCCTTAC 59.189 52.381 0.84 0.00 0.00 2.34
194 499 2.194201 GCATATTTAGCGGGGCCTTA 57.806 50.000 0.84 0.00 0.00 2.69
195 500 3.036431 GCATATTTAGCGGGGCCTT 57.964 52.632 0.84 0.00 0.00 4.35
196 501 4.821935 GCATATTTAGCGGGGCCT 57.178 55.556 0.84 0.00 0.00 5.19
203 508 6.782150 AGGAAAGTAAACACGCATATTTAGC 58.218 36.000 0.00 0.00 0.00 3.09
204 509 7.009815 TCGAGGAAAGTAAACACGCATATTTAG 59.990 37.037 0.00 0.00 0.00 1.85
205 510 6.812656 TCGAGGAAAGTAAACACGCATATTTA 59.187 34.615 0.00 0.00 0.00 1.40
206 511 5.640357 TCGAGGAAAGTAAACACGCATATTT 59.360 36.000 0.00 0.00 0.00 1.40
207 512 5.172934 TCGAGGAAAGTAAACACGCATATT 58.827 37.500 0.00 0.00 0.00 1.28
208 513 4.751060 TCGAGGAAAGTAAACACGCATAT 58.249 39.130 0.00 0.00 0.00 1.78
209 514 4.177165 TCGAGGAAAGTAAACACGCATA 57.823 40.909 0.00 0.00 0.00 3.14
210 515 3.034721 TCGAGGAAAGTAAACACGCAT 57.965 42.857 0.00 0.00 0.00 4.73
211 516 2.512485 TCGAGGAAAGTAAACACGCA 57.488 45.000 0.00 0.00 0.00 5.24
212 517 2.991190 TGATCGAGGAAAGTAAACACGC 59.009 45.455 0.00 0.00 0.00 5.34
213 518 3.060895 GCTGATCGAGGAAAGTAAACACG 59.939 47.826 0.00 0.00 0.00 4.49
214 519 4.246458 AGCTGATCGAGGAAAGTAAACAC 58.754 43.478 0.00 0.00 0.00 3.32
215 520 4.495422 GAGCTGATCGAGGAAAGTAAACA 58.505 43.478 0.00 0.00 0.00 2.83
216 521 3.866327 GGAGCTGATCGAGGAAAGTAAAC 59.134 47.826 0.00 0.00 0.00 2.01
217 522 3.428999 CGGAGCTGATCGAGGAAAGTAAA 60.429 47.826 0.00 0.00 0.00 2.01
218 523 2.099263 CGGAGCTGATCGAGGAAAGTAA 59.901 50.000 0.00 0.00 0.00 2.24
219 524 1.676529 CGGAGCTGATCGAGGAAAGTA 59.323 52.381 0.00 0.00 0.00 2.24
220 525 0.457851 CGGAGCTGATCGAGGAAAGT 59.542 55.000 0.00 0.00 0.00 2.66
221 526 3.264666 CGGAGCTGATCGAGGAAAG 57.735 57.895 0.00 0.00 0.00 2.62
240 545 3.112075 AATCGTGTGCGTGCTCGG 61.112 61.111 10.52 0.00 39.49 4.63
241 546 2.094539 CAATCGTGTGCGTGCTCG 59.905 61.111 3.31 3.31 39.49 5.03
242 547 2.476051 CCAATCGTGTGCGTGCTC 59.524 61.111 0.00 0.00 39.49 4.26
243 548 3.049674 CCCAATCGTGTGCGTGCT 61.050 61.111 0.00 0.00 39.49 4.40
244 549 4.759096 GCCCAATCGTGTGCGTGC 62.759 66.667 0.00 0.00 39.49 5.34
245 550 3.049674 AGCCCAATCGTGTGCGTG 61.050 61.111 0.00 0.00 39.49 5.34
246 551 3.049674 CAGCCCAATCGTGTGCGT 61.050 61.111 0.00 0.00 39.49 5.24
247 552 4.465512 GCAGCCCAATCGTGTGCG 62.466 66.667 0.00 0.00 39.92 5.34
248 553 4.120331 GGCAGCCCAATCGTGTGC 62.120 66.667 0.00 0.00 0.00 4.57
249 554 3.803082 CGGCAGCCCAATCGTGTG 61.803 66.667 5.63 0.00 0.00 3.82
250 555 3.842925 AACGGCAGCCCAATCGTGT 62.843 57.895 5.63 0.00 35.93 4.49
251 556 2.527547 GAAACGGCAGCCCAATCGTG 62.528 60.000 5.63 0.00 35.93 4.35
252 557 2.282180 AAACGGCAGCCCAATCGT 60.282 55.556 5.63 0.00 37.45 3.73
253 558 2.485122 GAAACGGCAGCCCAATCG 59.515 61.111 5.63 0.00 0.00 3.34
254 559 2.485122 CGAAACGGCAGCCCAATC 59.515 61.111 5.63 0.06 0.00 2.67
255 560 3.061848 CCGAAACGGCAGCCCAAT 61.062 61.111 5.63 0.00 41.17 3.16
265 570 1.059369 CAGCGATGAAGCCGAAACG 59.941 57.895 0.00 0.00 38.01 3.60
266 571 1.226128 GCAGCGATGAAGCCGAAAC 60.226 57.895 4.02 0.00 38.01 2.78
267 572 1.026182 ATGCAGCGATGAAGCCGAAA 61.026 50.000 4.02 0.00 38.01 3.46
268 573 1.450134 ATGCAGCGATGAAGCCGAA 60.450 52.632 4.02 0.00 38.01 4.30
269 574 2.175621 CATGCAGCGATGAAGCCGA 61.176 57.895 4.02 0.00 38.01 5.54
270 575 2.326897 CATGCAGCGATGAAGCCG 59.673 61.111 4.02 0.00 38.01 5.52
271 576 2.025727 GCATGCAGCGATGAAGCC 59.974 61.111 14.21 0.00 38.01 4.35
280 585 1.444895 CTGTTTTCCCGCATGCAGC 60.445 57.895 19.57 0.00 40.87 5.25
281 586 1.444895 GCTGTTTTCCCGCATGCAG 60.445 57.895 19.57 6.15 0.00 4.41
282 587 1.742324 TTGCTGTTTTCCCGCATGCA 61.742 50.000 19.57 0.00 33.15 3.96
283 588 0.599728 TTTGCTGTTTTCCCGCATGC 60.600 50.000 7.91 7.91 33.15 4.06
284 589 1.269726 ACTTTGCTGTTTTCCCGCATG 60.270 47.619 0.00 0.00 33.15 4.06
285 590 1.039856 ACTTTGCTGTTTTCCCGCAT 58.960 45.000 0.00 0.00 33.15 4.73
286 591 1.335496 GTACTTTGCTGTTTTCCCGCA 59.665 47.619 0.00 0.00 0.00 5.69
287 592 1.335597 GGTACTTTGCTGTTTTCCCGC 60.336 52.381 0.00 0.00 0.00 6.13
288 593 1.950909 TGGTACTTTGCTGTTTTCCCG 59.049 47.619 0.00 0.00 0.00 5.14
289 594 2.288213 GCTGGTACTTTGCTGTTTTCCC 60.288 50.000 0.00 0.00 0.00 3.97
290 595 2.623416 AGCTGGTACTTTGCTGTTTTCC 59.377 45.455 6.92 0.00 35.54 3.13
291 596 3.632189 CAGCTGGTACTTTGCTGTTTTC 58.368 45.455 19.47 0.00 46.23 2.29
292 597 3.715628 CAGCTGGTACTTTGCTGTTTT 57.284 42.857 19.47 0.00 46.23 2.43
297 602 1.879796 GCTCACAGCTGGTACTTTGCT 60.880 52.381 19.93 0.00 38.45 3.91
298 603 0.519077 GCTCACAGCTGGTACTTTGC 59.481 55.000 19.93 8.34 38.45 3.68
299 604 1.882912 TGCTCACAGCTGGTACTTTG 58.117 50.000 19.93 6.01 42.97 2.77
300 605 2.638480 TTGCTCACAGCTGGTACTTT 57.362 45.000 19.93 0.00 42.97 2.66
301 606 2.867109 ATTGCTCACAGCTGGTACTT 57.133 45.000 19.93 0.00 42.97 2.24
302 607 3.261897 AGTTATTGCTCACAGCTGGTACT 59.738 43.478 19.93 4.63 42.97 2.73
303 608 3.372206 CAGTTATTGCTCACAGCTGGTAC 59.628 47.826 19.93 4.99 42.97 3.34
304 609 3.599343 CAGTTATTGCTCACAGCTGGTA 58.401 45.455 19.93 4.23 42.97 3.25
305 610 2.430465 CAGTTATTGCTCACAGCTGGT 58.570 47.619 19.93 0.24 42.97 4.00
326 631 4.988598 ACCAACCACAGCGCGAGG 62.989 66.667 12.10 13.15 0.00 4.63
327 632 2.972505 AACCAACCACAGCGCGAG 60.973 61.111 12.10 3.23 0.00 5.03
328 633 3.276091 CAACCAACCACAGCGCGA 61.276 61.111 12.10 0.00 0.00 5.87
329 634 4.980903 GCAACCAACCACAGCGCG 62.981 66.667 0.00 0.00 0.00 6.86
330 635 3.211564 ATGCAACCAACCACAGCGC 62.212 57.895 0.00 0.00 0.00 5.92
331 636 1.372004 CATGCAACCAACCACAGCG 60.372 57.895 0.00 0.00 0.00 5.18
332 637 1.665599 GCATGCAACCAACCACAGC 60.666 57.895 14.21 0.00 0.00 4.40
333 638 1.372004 CGCATGCAACCAACCACAG 60.372 57.895 19.57 0.00 0.00 3.66
334 639 1.387295 TTCGCATGCAACCAACCACA 61.387 50.000 19.57 0.00 0.00 4.17
335 640 0.249238 TTTCGCATGCAACCAACCAC 60.249 50.000 19.57 0.00 0.00 4.16
336 641 0.031857 CTTTCGCATGCAACCAACCA 59.968 50.000 19.57 0.00 0.00 3.67
337 642 0.031994 ACTTTCGCATGCAACCAACC 59.968 50.000 19.57 0.00 0.00 3.77
338 643 2.697431 TACTTTCGCATGCAACCAAC 57.303 45.000 19.57 0.00 0.00 3.77
339 644 3.637432 CTTTACTTTCGCATGCAACCAA 58.363 40.909 19.57 1.20 0.00 3.67
340 645 2.606795 GCTTTACTTTCGCATGCAACCA 60.607 45.455 19.57 0.00 0.00 3.67
341 646 1.985684 GCTTTACTTTCGCATGCAACC 59.014 47.619 19.57 0.00 0.00 3.77
342 647 2.658325 CAGCTTTACTTTCGCATGCAAC 59.342 45.455 19.57 0.00 0.00 4.17
343 648 2.351641 CCAGCTTTACTTTCGCATGCAA 60.352 45.455 19.57 8.45 0.00 4.08
344 649 1.199789 CCAGCTTTACTTTCGCATGCA 59.800 47.619 19.57 1.73 0.00 3.96
345 650 1.468054 CCCAGCTTTACTTTCGCATGC 60.468 52.381 7.91 7.91 0.00 4.06
346 651 1.468054 GCCCAGCTTTACTTTCGCATG 60.468 52.381 0.00 0.00 0.00 4.06
347 652 0.811281 GCCCAGCTTTACTTTCGCAT 59.189 50.000 0.00 0.00 0.00 4.73
348 653 0.536233 TGCCCAGCTTTACTTTCGCA 60.536 50.000 0.00 0.00 0.00 5.10
349 654 0.596082 TTGCCCAGCTTTACTTTCGC 59.404 50.000 0.00 0.00 0.00 4.70
350 655 3.575965 AATTGCCCAGCTTTACTTTCG 57.424 42.857 0.00 0.00 0.00 3.46
351 656 4.158579 AGCTAATTGCCCAGCTTTACTTTC 59.841 41.667 0.00 0.00 45.80 2.62
352 657 4.089361 AGCTAATTGCCCAGCTTTACTTT 58.911 39.130 0.00 0.00 45.80 2.66
353 658 3.701664 AGCTAATTGCCCAGCTTTACTT 58.298 40.909 0.00 0.00 45.80 2.24
354 659 3.372440 AGCTAATTGCCCAGCTTTACT 57.628 42.857 0.00 0.00 45.80 2.24
355 660 4.035675 CAGTAGCTAATTGCCCAGCTTTAC 59.964 45.833 5.80 0.23 45.80 2.01
356 661 4.199310 CAGTAGCTAATTGCCCAGCTTTA 58.801 43.478 5.80 0.00 45.80 1.85
357 662 3.019564 CAGTAGCTAATTGCCCAGCTTT 58.980 45.455 5.80 0.00 45.80 3.51
358 663 2.025887 ACAGTAGCTAATTGCCCAGCTT 60.026 45.455 5.80 0.00 45.80 3.74
360 665 1.672881 CACAGTAGCTAATTGCCCAGC 59.327 52.381 0.00 0.00 44.23 4.85
361 666 3.201290 CTCACAGTAGCTAATTGCCCAG 58.799 50.000 0.00 0.00 44.23 4.45
362 667 2.092968 CCTCACAGTAGCTAATTGCCCA 60.093 50.000 0.00 0.00 44.23 5.36
363 668 2.565841 CCTCACAGTAGCTAATTGCCC 58.434 52.381 0.00 0.00 44.23 5.36
364 669 1.943340 GCCTCACAGTAGCTAATTGCC 59.057 52.381 0.00 0.00 44.23 4.52
365 670 2.911484 AGCCTCACAGTAGCTAATTGC 58.089 47.619 0.00 0.00 43.29 3.56
366 671 4.095483 CCAAAGCCTCACAGTAGCTAATTG 59.905 45.833 0.00 0.00 35.30 2.32
367 672 4.019321 TCCAAAGCCTCACAGTAGCTAATT 60.019 41.667 0.00 0.00 35.30 1.40
368 673 3.519510 TCCAAAGCCTCACAGTAGCTAAT 59.480 43.478 0.00 0.00 35.30 1.73
369 674 2.903784 TCCAAAGCCTCACAGTAGCTAA 59.096 45.455 0.00 0.00 35.30 3.09
370 675 2.536066 TCCAAAGCCTCACAGTAGCTA 58.464 47.619 0.00 0.00 35.30 3.32
371 676 1.352083 TCCAAAGCCTCACAGTAGCT 58.648 50.000 0.00 0.00 38.88 3.32
372 677 2.185004 TTCCAAAGCCTCACAGTAGC 57.815 50.000 0.00 0.00 0.00 3.58
373 678 5.352569 CAGTTATTCCAAAGCCTCACAGTAG 59.647 44.000 0.00 0.00 0.00 2.57
374 679 5.245531 CAGTTATTCCAAAGCCTCACAGTA 58.754 41.667 0.00 0.00 0.00 2.74
375 680 4.074970 CAGTTATTCCAAAGCCTCACAGT 58.925 43.478 0.00 0.00 0.00 3.55
376 681 3.119708 GCAGTTATTCCAAAGCCTCACAG 60.120 47.826 0.00 0.00 0.00 3.66
377 682 2.819608 GCAGTTATTCCAAAGCCTCACA 59.180 45.455 0.00 0.00 0.00 3.58
378 683 2.819608 TGCAGTTATTCCAAAGCCTCAC 59.180 45.455 0.00 0.00 0.00 3.51
379 684 3.084039 CTGCAGTTATTCCAAAGCCTCA 58.916 45.455 5.25 0.00 0.00 3.86
380 685 3.347216 TCTGCAGTTATTCCAAAGCCTC 58.653 45.455 14.67 0.00 0.00 4.70
381 686 3.439857 TCTGCAGTTATTCCAAAGCCT 57.560 42.857 14.67 0.00 0.00 4.58
382 687 4.725790 AATCTGCAGTTATTCCAAAGCC 57.274 40.909 14.67 0.00 0.00 4.35
383 688 7.710896 AGATTAATCTGCAGTTATTCCAAAGC 58.289 34.615 17.26 1.95 35.42 3.51
389 694 9.617975 GCCAATTAGATTAATCTGCAGTTATTC 57.382 33.333 25.22 15.26 37.76 1.75
390 695 9.359653 AGCCAATTAGATTAATCTGCAGTTATT 57.640 29.630 25.22 9.68 37.76 1.40
391 696 8.790718 CAGCCAATTAGATTAATCTGCAGTTAT 58.209 33.333 25.22 6.47 37.76 1.89
392 697 7.255242 GCAGCCAATTAGATTAATCTGCAGTTA 60.255 37.037 25.22 8.95 40.44 2.24
393 698 6.460676 GCAGCCAATTAGATTAATCTGCAGTT 60.461 38.462 25.22 12.57 40.44 3.16
394 699 5.009410 GCAGCCAATTAGATTAATCTGCAGT 59.991 40.000 25.22 10.25 40.44 4.40
395 700 5.241064 AGCAGCCAATTAGATTAATCTGCAG 59.759 40.000 25.22 17.18 41.87 4.41
396 701 5.009310 CAGCAGCCAATTAGATTAATCTGCA 59.991 40.000 25.22 13.58 41.87 4.41
397 702 5.458891 CAGCAGCCAATTAGATTAATCTGC 58.541 41.667 25.22 19.18 40.75 4.26
398 703 5.241064 AGCAGCAGCCAATTAGATTAATCTG 59.759 40.000 25.22 11.08 43.56 2.90
399 704 5.383476 AGCAGCAGCCAATTAGATTAATCT 58.617 37.500 21.28 21.28 43.56 2.40
400 705 5.702349 AGCAGCAGCCAATTAGATTAATC 57.298 39.130 7.41 7.41 43.56 1.75
401 706 6.302269 AGTAGCAGCAGCCAATTAGATTAAT 58.698 36.000 0.00 0.00 43.56 1.40
402 707 5.684704 AGTAGCAGCAGCCAATTAGATTAA 58.315 37.500 0.00 0.00 43.56 1.40
403 708 5.296151 AGTAGCAGCAGCCAATTAGATTA 57.704 39.130 0.00 0.00 43.56 1.75
404 709 4.162040 AGTAGCAGCAGCCAATTAGATT 57.838 40.909 0.00 0.00 43.56 2.40
405 710 3.853355 AGTAGCAGCAGCCAATTAGAT 57.147 42.857 0.00 0.00 43.56 1.98
406 711 3.634397 AAGTAGCAGCAGCCAATTAGA 57.366 42.857 0.00 0.00 43.56 2.10
407 712 3.691118 TGAAAGTAGCAGCAGCCAATTAG 59.309 43.478 0.00 0.00 43.56 1.73
408 713 3.684908 TGAAAGTAGCAGCAGCCAATTA 58.315 40.909 0.00 0.00 43.56 1.40
409 714 2.517959 TGAAAGTAGCAGCAGCCAATT 58.482 42.857 0.00 0.00 43.56 2.32
410 715 2.205022 TGAAAGTAGCAGCAGCCAAT 57.795 45.000 0.00 0.00 43.56 3.16
411 716 2.205022 ATGAAAGTAGCAGCAGCCAA 57.795 45.000 0.00 0.00 43.56 4.52
412 717 3.273434 CTTATGAAAGTAGCAGCAGCCA 58.727 45.455 0.00 0.00 43.56 4.75
413 718 3.274288 ACTTATGAAAGTAGCAGCAGCC 58.726 45.455 0.00 0.00 44.26 4.85
414 719 3.935203 TGACTTATGAAAGTAGCAGCAGC 59.065 43.478 0.00 0.00 46.09 5.25
415 720 4.032217 CGTGACTTATGAAAGTAGCAGCAG 59.968 45.833 0.00 0.00 46.09 4.24
416 721 3.926527 CGTGACTTATGAAAGTAGCAGCA 59.073 43.478 0.00 0.00 46.09 4.41
417 722 3.307242 CCGTGACTTATGAAAGTAGCAGC 59.693 47.826 0.00 0.00 46.09 5.25
418 723 4.744570 TCCGTGACTTATGAAAGTAGCAG 58.255 43.478 0.00 0.00 46.09 4.24
419 724 4.794278 TCCGTGACTTATGAAAGTAGCA 57.206 40.909 0.00 0.00 46.09 3.49
420 725 4.508124 CCATCCGTGACTTATGAAAGTAGC 59.492 45.833 0.00 0.00 46.09 3.58
421 726 5.661458 ACCATCCGTGACTTATGAAAGTAG 58.339 41.667 0.00 0.00 46.09 2.57
422 727 5.670792 ACCATCCGTGACTTATGAAAGTA 57.329 39.130 0.00 0.00 46.09 2.24
424 729 5.293569 GGTAACCATCCGTGACTTATGAAAG 59.706 44.000 0.00 0.00 38.77 2.62
425 730 5.180271 GGTAACCATCCGTGACTTATGAAA 58.820 41.667 0.00 0.00 0.00 2.69
426 731 4.223255 TGGTAACCATCCGTGACTTATGAA 59.777 41.667 0.00 0.00 0.00 2.57
427 732 3.770388 TGGTAACCATCCGTGACTTATGA 59.230 43.478 0.00 0.00 0.00 2.15
428 733 4.119862 CTGGTAACCATCCGTGACTTATG 58.880 47.826 0.00 0.00 30.82 1.90
429 734 3.773119 ACTGGTAACCATCCGTGACTTAT 59.227 43.478 0.00 0.00 30.82 1.73
430 735 3.167485 ACTGGTAACCATCCGTGACTTA 58.833 45.455 0.00 0.00 30.82 2.24
431 736 1.975680 ACTGGTAACCATCCGTGACTT 59.024 47.619 0.00 0.00 30.82 3.01
432 737 1.640917 ACTGGTAACCATCCGTGACT 58.359 50.000 0.00 0.00 30.82 3.41
433 738 3.598019 TTACTGGTAACCATCCGTGAC 57.402 47.619 0.00 0.00 30.82 3.67
434 739 6.325545 AGAATATTACTGGTAACCATCCGTGA 59.674 38.462 0.00 0.00 30.82 4.35
435 740 6.522054 AGAATATTACTGGTAACCATCCGTG 58.478 40.000 0.00 0.00 30.82 4.94
436 741 6.742559 AGAATATTACTGGTAACCATCCGT 57.257 37.500 0.00 0.00 30.82 4.69
437 742 6.649557 GGAAGAATATTACTGGTAACCATCCG 59.350 42.308 0.00 0.00 30.82 4.18
438 743 7.746703 AGGAAGAATATTACTGGTAACCATCC 58.253 38.462 0.00 0.00 30.82 3.51
439 744 9.057089 CAAGGAAGAATATTACTGGTAACCATC 57.943 37.037 0.00 0.00 30.82 3.51
440 745 7.998964 CCAAGGAAGAATATTACTGGTAACCAT 59.001 37.037 0.00 0.00 30.82 3.55
441 746 7.037153 ACCAAGGAAGAATATTACTGGTAACCA 60.037 37.037 0.00 0.00 0.00 3.67
442 747 7.344134 ACCAAGGAAGAATATTACTGGTAACC 58.656 38.462 0.00 0.00 0.00 2.85
443 748 7.498239 GGACCAAGGAAGAATATTACTGGTAAC 59.502 40.741 0.00 0.00 0.00 2.50
444 749 7.404980 AGGACCAAGGAAGAATATTACTGGTAA 59.595 37.037 0.00 0.00 0.00 2.85
445 750 6.906901 AGGACCAAGGAAGAATATTACTGGTA 59.093 38.462 0.00 0.00 0.00 3.25
446 751 5.731678 AGGACCAAGGAAGAATATTACTGGT 59.268 40.000 0.00 0.00 0.00 4.00
447 752 6.253946 AGGACCAAGGAAGAATATTACTGG 57.746 41.667 0.00 0.00 0.00 4.00
448 753 5.986135 CGAGGACCAAGGAAGAATATTACTG 59.014 44.000 0.00 0.00 0.00 2.74
449 754 5.661759 ACGAGGACCAAGGAAGAATATTACT 59.338 40.000 0.00 0.00 0.00 2.24
450 755 5.753921 CACGAGGACCAAGGAAGAATATTAC 59.246 44.000 0.00 0.00 0.00 1.89
451 756 5.684030 GCACGAGGACCAAGGAAGAATATTA 60.684 44.000 0.00 0.00 0.00 0.98
452 757 4.770795 CACGAGGACCAAGGAAGAATATT 58.229 43.478 0.00 0.00 0.00 1.28
453 758 3.432326 GCACGAGGACCAAGGAAGAATAT 60.432 47.826 0.00 0.00 0.00 1.28
454 759 2.093658 GCACGAGGACCAAGGAAGAATA 60.094 50.000 0.00 0.00 0.00 1.75
455 760 1.339151 GCACGAGGACCAAGGAAGAAT 60.339 52.381 0.00 0.00 0.00 2.40
456 761 0.034896 GCACGAGGACCAAGGAAGAA 59.965 55.000 0.00 0.00 0.00 2.52
457 762 1.671742 GCACGAGGACCAAGGAAGA 59.328 57.895 0.00 0.00 0.00 2.87
458 763 1.376037 GGCACGAGGACCAAGGAAG 60.376 63.158 0.00 0.00 0.00 3.46
459 764 2.747686 GGCACGAGGACCAAGGAA 59.252 61.111 0.00 0.00 0.00 3.36
472 777 2.033194 GGTCTGTTAGCCACGGCAC 61.033 63.158 11.35 0.91 44.88 5.01
473 778 2.345991 GGTCTGTTAGCCACGGCA 59.654 61.111 11.35 0.00 44.88 5.69
474 779 2.436115 GGGTCTGTTAGCCACGGC 60.436 66.667 0.00 0.00 45.71 5.68
479 784 3.694566 CAGGTTTATTGGGTCTGTTAGCC 59.305 47.826 0.00 0.00 46.67 3.93
480 785 3.694566 CCAGGTTTATTGGGTCTGTTAGC 59.305 47.826 0.00 0.00 31.87 3.09
481 786 4.941873 GTCCAGGTTTATTGGGTCTGTTAG 59.058 45.833 0.00 0.00 36.34 2.34
482 787 4.563993 CGTCCAGGTTTATTGGGTCTGTTA 60.564 45.833 0.00 0.00 36.34 2.41
483 788 3.763057 GTCCAGGTTTATTGGGTCTGTT 58.237 45.455 0.00 0.00 36.34 3.16
484 789 2.290071 CGTCCAGGTTTATTGGGTCTGT 60.290 50.000 0.00 0.00 36.34 3.41
485 790 2.356135 CGTCCAGGTTTATTGGGTCTG 58.644 52.381 0.00 0.00 36.34 3.51
486 791 1.280998 CCGTCCAGGTTTATTGGGTCT 59.719 52.381 0.00 0.00 36.34 3.85
487 792 1.279846 TCCGTCCAGGTTTATTGGGTC 59.720 52.381 0.00 0.00 41.99 4.46
488 793 1.280998 CTCCGTCCAGGTTTATTGGGT 59.719 52.381 0.00 0.00 41.99 4.51
489 794 1.408266 CCTCCGTCCAGGTTTATTGGG 60.408 57.143 0.00 0.00 41.99 4.12
490 795 1.408266 CCCTCCGTCCAGGTTTATTGG 60.408 57.143 0.00 0.00 41.99 3.16
491 796 1.557832 TCCCTCCGTCCAGGTTTATTG 59.442 52.381 0.00 0.00 41.99 1.90
492 797 1.838077 CTCCCTCCGTCCAGGTTTATT 59.162 52.381 0.00 0.00 41.99 1.40
493 798 1.273666 ACTCCCTCCGTCCAGGTTTAT 60.274 52.381 0.00 0.00 41.99 1.40
494 799 0.115745 ACTCCCTCCGTCCAGGTTTA 59.884 55.000 0.00 0.00 41.99 2.01
495 800 0.115745 TACTCCCTCCGTCCAGGTTT 59.884 55.000 0.00 0.00 41.99 3.27
496 801 0.324460 CTACTCCCTCCGTCCAGGTT 60.324 60.000 0.00 0.00 41.99 3.50
497 802 1.306970 CTACTCCCTCCGTCCAGGT 59.693 63.158 0.00 0.00 41.99 4.00
498 803 2.128507 GCTACTCCCTCCGTCCAGG 61.129 68.421 0.00 0.00 42.97 4.45
499 804 2.128507 GGCTACTCCCTCCGTCCAG 61.129 68.421 0.00 0.00 0.00 3.86
500 805 2.043248 GGCTACTCCCTCCGTCCA 60.043 66.667 0.00 0.00 0.00 4.02
501 806 2.043248 TGGCTACTCCCTCCGTCC 60.043 66.667 0.00 0.00 0.00 4.79
502 807 0.106819 TAGTGGCTACTCCCTCCGTC 60.107 60.000 5.78 0.00 38.36 4.79
503 808 0.333993 TTAGTGGCTACTCCCTCCGT 59.666 55.000 5.78 0.00 38.36 4.69
504 809 1.033574 CTTAGTGGCTACTCCCTCCG 58.966 60.000 5.78 0.00 38.36 4.63
505 810 0.753867 GCTTAGTGGCTACTCCCTCC 59.246 60.000 5.78 0.00 38.36 4.30
506 811 0.386113 CGCTTAGTGGCTACTCCCTC 59.614 60.000 5.78 0.00 38.36 4.30
507 812 1.043673 CCGCTTAGTGGCTACTCCCT 61.044 60.000 5.78 0.00 38.36 4.20
508 813 1.041447 TCCGCTTAGTGGCTACTCCC 61.041 60.000 5.78 0.00 38.36 4.30
509 814 0.822164 TTCCGCTTAGTGGCTACTCC 59.178 55.000 5.78 0.00 38.36 3.85
510 815 2.094130 ACTTTCCGCTTAGTGGCTACTC 60.094 50.000 5.78 0.00 38.36 2.59
511 816 1.900486 ACTTTCCGCTTAGTGGCTACT 59.100 47.619 8.18 8.18 40.99 2.57
512 817 2.381725 ACTTTCCGCTTAGTGGCTAC 57.618 50.000 6.99 0.00 32.51 3.58
513 818 3.412237 AAACTTTCCGCTTAGTGGCTA 57.588 42.857 6.99 0.00 32.51 3.93
514 819 2.271944 AAACTTTCCGCTTAGTGGCT 57.728 45.000 6.99 0.00 32.51 4.75
515 820 2.661594 CAAAACTTTCCGCTTAGTGGC 58.338 47.619 6.99 0.00 32.51 5.01
516 821 2.293399 AGCAAAACTTTCCGCTTAGTGG 59.707 45.455 5.29 5.29 33.99 4.00
517 822 3.626028 AGCAAAACTTTCCGCTTAGTG 57.374 42.857 0.00 0.00 0.00 2.74
523 828 1.199327 GGACCTAGCAAAACTTTCCGC 59.801 52.381 0.00 0.00 0.00 5.54
624 933 7.038659 CAGCTAGCTAAGTAGAAAATGTCACT 58.961 38.462 18.86 0.00 0.00 3.41
655 964 5.049828 GCTTTATTGTTTGAAGGTGCAGTT 58.950 37.500 0.00 0.00 0.00 3.16
730 1045 3.557898 GGGCATGACTGTTATCGATCCAT 60.558 47.826 0.00 0.00 0.00 3.41
774 1092 3.050275 GGGGAAGTGAGCGTGCAC 61.050 66.667 6.82 6.82 39.05 4.57
781 1099 2.106511 TGAAGAAACAGGGGGAAGTGAG 59.893 50.000 0.00 0.00 0.00 3.51
841 1162 2.025441 TGTTTTCTTGTGCGCCGC 59.975 55.556 4.18 0.00 0.00 6.53
892 1224 2.401583 TTTGGCACACGAGCTCATAT 57.598 45.000 15.40 0.00 39.29 1.78
894 1226 0.593128 GTTTTGGCACACGAGCTCAT 59.407 50.000 15.40 0.00 39.29 2.90
961 1293 3.679389 AGATGGTTCTGGATGTTGTGTC 58.321 45.455 0.00 0.00 0.00 3.67
1503 1847 1.753073 CGATAGAACCGGTTGTACCCT 59.247 52.381 27.87 17.45 33.52 4.34
1677 2021 1.918293 CTCCCACTGCCCTACCACA 60.918 63.158 0.00 0.00 0.00 4.17
1826 2170 1.153066 TTGTTCGCCTTCTGCACCA 60.153 52.632 0.00 0.00 41.33 4.17
1905 2249 0.928505 ATCAGGCCCATCCATTGACA 59.071 50.000 0.00 0.00 37.29 3.58
2029 2380 8.677300 CGGACATTTGTACTAGTTAGTAGGTAA 58.323 37.037 0.00 0.00 39.29 2.85
2030 2381 7.829211 ACGGACATTTGTACTAGTTAGTAGGTA 59.171 37.037 0.00 0.00 39.29 3.08
2031 2382 6.660949 ACGGACATTTGTACTAGTTAGTAGGT 59.339 38.462 0.00 0.00 39.29 3.08
2032 2383 6.971184 CACGGACATTTGTACTAGTTAGTAGG 59.029 42.308 0.00 0.00 39.29 3.18
2033 2384 6.471519 GCACGGACATTTGTACTAGTTAGTAG 59.528 42.308 0.00 0.00 39.29 2.57
2034 2385 6.324819 GCACGGACATTTGTACTAGTTAGTA 58.675 40.000 0.00 0.00 37.73 1.82
2035 2386 5.166398 GCACGGACATTTGTACTAGTTAGT 58.834 41.667 0.00 0.00 40.24 2.24
2036 2387 4.264614 CGCACGGACATTTGTACTAGTTAG 59.735 45.833 0.00 0.00 0.00 2.34
2037 2388 4.168014 CGCACGGACATTTGTACTAGTTA 58.832 43.478 0.00 0.00 0.00 2.24
2038 2389 2.991190 CGCACGGACATTTGTACTAGTT 59.009 45.455 0.00 0.00 0.00 2.24
2754 3281 9.180678 GACGAAACAGTTTATCAACATCAATTT 57.819 29.630 0.00 0.00 35.05 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.