Multiple sequence alignment - TraesCS1B01G056100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G056100 chr1B 100.000 2501 0 0 1 2501 39235825 39233325 0.000000e+00 4619.0
1 TraesCS1B01G056100 chr1B 97.423 582 12 2 1846 2425 606185835 606186415 0.000000e+00 989.0
2 TraesCS1B01G056100 chr1D 92.936 1090 39 15 768 1857 22736019 22737070 0.000000e+00 1552.0
3 TraesCS1B01G056100 chr1D 83.955 268 23 4 1 261 22734838 22735092 3.210000e-59 239.0
4 TraesCS1B01G056100 chr1D 83.772 228 16 7 209 416 22735793 22736019 1.960000e-46 196.0
5 TraesCS1B01G056100 chr1A 91.540 792 30 15 734 1515 23828159 23828923 0.000000e+00 1057.0
6 TraesCS1B01G056100 chr1A 88.498 313 15 2 1539 1849 23828916 23829209 2.370000e-95 359.0
7 TraesCS1B01G056100 chr1A 88.688 221 17 2 1 214 23827880 23828099 1.910000e-66 263.0
8 TraesCS1B01G056100 chr5D 88.926 596 36 12 1856 2422 248980090 248979496 0.000000e+00 708.0
9 TraesCS1B01G056100 chr5D 81.646 158 25 4 573 728 442358577 442358422 7.260000e-26 128.0
10 TraesCS1B01G056100 chr2B 85.880 602 47 20 1856 2423 607955952 607956549 7.650000e-170 606.0
11 TraesCS1B01G056100 chr2B 83.577 615 54 18 1856 2424 464880325 464879712 1.320000e-147 532.0
12 TraesCS1B01G056100 chr2B 85.306 245 32 4 1980 2222 186362107 186361865 1.490000e-62 250.0
13 TraesCS1B01G056100 chr2B 95.455 66 3 0 2356 2421 755977082 755977017 3.400000e-19 106.0
14 TraesCS1B01G056100 chr2D 84.824 626 36 17 1852 2423 469160216 469160836 2.160000e-160 575.0
15 TraesCS1B01G056100 chr2D 78.744 207 36 7 2219 2423 2442080 2441880 5.610000e-27 132.0
16 TraesCS1B01G056100 chr2D 91.667 48 4 0 2376 2423 634854438 634854391 1.610000e-07 67.6
17 TraesCS1B01G056100 chr6A 84.006 619 32 24 1856 2422 404875168 404875771 1.320000e-147 532.0
18 TraesCS1B01G056100 chr2A 83.575 621 37 24 1855 2423 587969491 587970098 2.850000e-144 521.0
19 TraesCS1B01G056100 chr2A 80.077 261 40 9 468 728 727601442 727601194 1.530000e-42 183.0
20 TraesCS1B01G056100 chr4B 82.298 531 40 18 1940 2422 345282632 345283156 6.440000e-111 411.0
21 TraesCS1B01G056100 chr4B 92.937 269 15 1 465 733 107849877 107849613 3.020000e-104 388.0
22 TraesCS1B01G056100 chr7D 93.309 269 14 1 465 733 544371421 544371685 6.480000e-106 394.0
23 TraesCS1B01G056100 chr5A 92.565 269 16 1 465 733 23431698 23431962 1.400000e-102 383.0
24 TraesCS1B01G056100 chr5A 82.188 393 34 21 1856 2222 680083755 680083373 3.130000e-79 305.0
25 TraesCS1B01G056100 chr7B 78.737 649 73 31 1845 2432 32678886 32678242 8.450000e-100 374.0
26 TraesCS1B01G056100 chr7B 78.937 489 53 20 1980 2422 547703117 547702633 1.130000e-73 287.0
27 TraesCS1B01G056100 chr3A 91.822 269 18 1 465 733 24682217 24681953 3.040000e-99 372.0
28 TraesCS1B01G056100 chr3A 86.957 69 8 1 1856 1924 552212126 552212059 2.670000e-10 76.8
29 TraesCS1B01G056100 chr6D 79.925 533 54 25 1940 2422 54852652 54852123 2.380000e-90 342.0
30 TraesCS1B01G056100 chr3D 83.459 399 31 18 1856 2222 519338708 519339103 3.080000e-89 339.0
31 TraesCS1B01G056100 chr6B 88.364 275 23 4 464 733 116461240 116461510 3.100000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G056100 chr1B 39233325 39235825 2500 True 4619.000000 4619 100.000000 1 2501 1 chr1B.!!$R1 2500
1 TraesCS1B01G056100 chr1B 606185835 606186415 580 False 989.000000 989 97.423000 1846 2425 1 chr1B.!!$F1 579
2 TraesCS1B01G056100 chr1D 22734838 22737070 2232 False 662.333333 1552 86.887667 1 1857 3 chr1D.!!$F1 1856
3 TraesCS1B01G056100 chr1A 23827880 23829209 1329 False 559.666667 1057 89.575333 1 1849 3 chr1A.!!$F1 1848
4 TraesCS1B01G056100 chr5D 248979496 248980090 594 True 708.000000 708 88.926000 1856 2422 1 chr5D.!!$R1 566
5 TraesCS1B01G056100 chr2B 607955952 607956549 597 False 606.000000 606 85.880000 1856 2423 1 chr2B.!!$F1 567
6 TraesCS1B01G056100 chr2B 464879712 464880325 613 True 532.000000 532 83.577000 1856 2424 1 chr2B.!!$R2 568
7 TraesCS1B01G056100 chr2D 469160216 469160836 620 False 575.000000 575 84.824000 1852 2423 1 chr2D.!!$F1 571
8 TraesCS1B01G056100 chr6A 404875168 404875771 603 False 532.000000 532 84.006000 1856 2422 1 chr6A.!!$F1 566
9 TraesCS1B01G056100 chr2A 587969491 587970098 607 False 521.000000 521 83.575000 1855 2423 1 chr2A.!!$F1 568
10 TraesCS1B01G056100 chr4B 345282632 345283156 524 False 411.000000 411 82.298000 1940 2422 1 chr4B.!!$F1 482
11 TraesCS1B01G056100 chr7B 32678242 32678886 644 True 374.000000 374 78.737000 1845 2432 1 chr7B.!!$R1 587
12 TraesCS1B01G056100 chr6D 54852123 54852652 529 True 342.000000 342 79.925000 1940 2422 1 chr6D.!!$R1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 1639 0.034896 CATAATTAGCCCGCGGAGGT 59.965 55.0 30.73 23.91 38.74 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 2655 0.535335 GTAGATTCGCCACTGGTCCA 59.465 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.603596 TCTTTGTTACAACGTGGTCTATGT 58.396 37.500 0.00 0.00 0.00 2.29
48 49 3.478857 ACGTGGTCTATGTTTCAACCA 57.521 42.857 0.00 0.00 39.42 3.67
64 65 2.136878 CCATCTCGGCTGCTACCCT 61.137 63.158 0.00 0.00 0.00 4.34
91 92 2.281692 AGCATGCCTCGTGTTGCA 60.282 55.556 15.66 0.00 42.52 4.08
187 202 0.245539 ATGAGCCATGTTGCAAGCAC 59.754 50.000 0.00 0.00 0.00 4.40
189 204 0.245539 GAGCCATGTTGCAAGCACAT 59.754 50.000 0.00 0.00 0.00 3.21
235 995 4.388007 CGTATAACACGCCTCGCA 57.612 55.556 0.00 0.00 45.03 5.10
245 1005 3.426568 GCCTCGCACTGCCTGTTC 61.427 66.667 0.00 0.00 0.00 3.18
275 1035 6.813214 ACATGACCTGTGTTGCAATTGCAG 62.813 45.833 30.25 20.70 44.17 4.41
283 1043 4.507879 GCAATTGCAGCATGACCC 57.492 55.556 25.36 0.00 39.69 4.46
284 1044 1.517694 GCAATTGCAGCATGACCCG 60.518 57.895 25.36 0.00 39.69 5.28
360 1122 0.179121 AGACGACACGACTTGCAACA 60.179 50.000 0.00 0.00 0.00 3.33
383 1162 3.666374 CGTTGCAAAATCTGACTGAGCTC 60.666 47.826 6.82 6.82 0.00 4.09
386 1165 2.419324 GCAAAATCTGACTGAGCTCCTG 59.581 50.000 12.15 6.77 0.00 3.86
438 1217 4.724602 GGCACGACGCAGCTGAGA 62.725 66.667 25.03 0.00 45.17 3.27
487 1266 4.419522 TTTTTGCGGTAATCAAGAGAGC 57.580 40.909 0.00 0.00 0.00 4.09
488 1267 3.334583 TTTGCGGTAATCAAGAGAGCT 57.665 42.857 0.00 0.00 0.00 4.09
489 1268 3.334583 TTGCGGTAATCAAGAGAGCTT 57.665 42.857 0.00 0.00 33.74 3.74
490 1269 3.334583 TGCGGTAATCAAGAGAGCTTT 57.665 42.857 0.00 0.00 30.14 3.51
491 1270 4.465632 TGCGGTAATCAAGAGAGCTTTA 57.534 40.909 0.00 0.00 30.14 1.85
492 1271 4.181578 TGCGGTAATCAAGAGAGCTTTAC 58.818 43.478 0.00 0.00 30.14 2.01
493 1272 4.081642 TGCGGTAATCAAGAGAGCTTTACT 60.082 41.667 0.00 0.00 30.14 2.24
494 1273 5.126545 TGCGGTAATCAAGAGAGCTTTACTA 59.873 40.000 0.00 0.00 30.14 1.82
495 1274 6.040878 GCGGTAATCAAGAGAGCTTTACTAA 58.959 40.000 0.00 0.00 30.14 2.24
496 1275 6.534079 GCGGTAATCAAGAGAGCTTTACTAAA 59.466 38.462 0.00 0.00 30.14 1.85
497 1276 7.224949 GCGGTAATCAAGAGAGCTTTACTAAAT 59.775 37.037 0.00 0.00 30.14 1.40
498 1277 8.756864 CGGTAATCAAGAGAGCTTTACTAAATC 58.243 37.037 0.00 0.00 30.14 2.17
499 1278 9.601217 GGTAATCAAGAGAGCTTTACTAAATCA 57.399 33.333 0.00 0.00 30.14 2.57
502 1281 8.715191 ATCAAGAGAGCTTTACTAAATCACAG 57.285 34.615 0.00 0.00 30.14 3.66
503 1282 6.591834 TCAAGAGAGCTTTACTAAATCACAGC 59.408 38.462 0.00 0.00 30.14 4.40
504 1283 6.042638 AGAGAGCTTTACTAAATCACAGCA 57.957 37.500 0.00 0.00 0.00 4.41
505 1284 6.105333 AGAGAGCTTTACTAAATCACAGCAG 58.895 40.000 0.00 0.00 0.00 4.24
506 1285 6.042638 AGAGCTTTACTAAATCACAGCAGA 57.957 37.500 0.00 0.00 0.00 4.26
507 1286 5.872070 AGAGCTTTACTAAATCACAGCAGAC 59.128 40.000 0.00 0.00 0.00 3.51
508 1287 4.938226 AGCTTTACTAAATCACAGCAGACC 59.062 41.667 0.00 0.00 0.00 3.85
509 1288 4.938226 GCTTTACTAAATCACAGCAGACCT 59.062 41.667 0.00 0.00 0.00 3.85
510 1289 6.070767 AGCTTTACTAAATCACAGCAGACCTA 60.071 38.462 0.00 0.00 0.00 3.08
511 1290 6.256757 GCTTTACTAAATCACAGCAGACCTAG 59.743 42.308 0.00 0.00 0.00 3.02
512 1291 4.744795 ACTAAATCACAGCAGACCTAGG 57.255 45.455 7.41 7.41 0.00 3.02
513 1292 4.353777 ACTAAATCACAGCAGACCTAGGA 58.646 43.478 17.98 0.00 0.00 2.94
514 1293 3.618690 AAATCACAGCAGACCTAGGAC 57.381 47.619 17.98 9.98 0.00 3.85
515 1294 2.238084 ATCACAGCAGACCTAGGACA 57.762 50.000 17.98 0.00 0.00 4.02
516 1295 2.009681 TCACAGCAGACCTAGGACAA 57.990 50.000 17.98 0.00 0.00 3.18
517 1296 2.540383 TCACAGCAGACCTAGGACAAT 58.460 47.619 17.98 0.00 0.00 2.71
518 1297 2.497675 TCACAGCAGACCTAGGACAATC 59.502 50.000 17.98 1.78 0.00 2.67
519 1298 2.234661 CACAGCAGACCTAGGACAATCA 59.765 50.000 17.98 0.00 0.00 2.57
520 1299 2.906389 ACAGCAGACCTAGGACAATCAA 59.094 45.455 17.98 0.00 0.00 2.57
521 1300 3.265791 CAGCAGACCTAGGACAATCAAC 58.734 50.000 17.98 0.00 0.00 3.18
522 1301 2.237392 AGCAGACCTAGGACAATCAACC 59.763 50.000 17.98 0.00 0.00 3.77
523 1302 2.027192 GCAGACCTAGGACAATCAACCA 60.027 50.000 17.98 0.00 0.00 3.67
524 1303 3.370953 GCAGACCTAGGACAATCAACCAT 60.371 47.826 17.98 0.00 0.00 3.55
525 1304 4.446371 CAGACCTAGGACAATCAACCATC 58.554 47.826 17.98 0.00 0.00 3.51
526 1305 4.080919 CAGACCTAGGACAATCAACCATCA 60.081 45.833 17.98 0.00 0.00 3.07
527 1306 4.536090 AGACCTAGGACAATCAACCATCAA 59.464 41.667 17.98 0.00 0.00 2.57
528 1307 4.848357 ACCTAGGACAATCAACCATCAAG 58.152 43.478 17.98 0.00 0.00 3.02
529 1308 3.629398 CCTAGGACAATCAACCATCAAGC 59.371 47.826 1.05 0.00 0.00 4.01
530 1309 3.446442 AGGACAATCAACCATCAAGCT 57.554 42.857 0.00 0.00 0.00 3.74
531 1310 4.574674 AGGACAATCAACCATCAAGCTA 57.425 40.909 0.00 0.00 0.00 3.32
532 1311 4.521146 AGGACAATCAACCATCAAGCTAG 58.479 43.478 0.00 0.00 0.00 3.42
533 1312 4.018960 AGGACAATCAACCATCAAGCTAGT 60.019 41.667 0.00 0.00 0.00 2.57
534 1313 4.333926 GGACAATCAACCATCAAGCTAGTC 59.666 45.833 0.00 0.00 0.00 2.59
535 1314 4.910195 ACAATCAACCATCAAGCTAGTCA 58.090 39.130 0.00 0.00 0.00 3.41
536 1315 4.697352 ACAATCAACCATCAAGCTAGTCAC 59.303 41.667 0.00 0.00 0.00 3.67
537 1316 4.833478 ATCAACCATCAAGCTAGTCACT 57.167 40.909 0.00 0.00 0.00 3.41
538 1317 5.939764 ATCAACCATCAAGCTAGTCACTA 57.060 39.130 0.00 0.00 0.00 2.74
539 1318 5.330455 TCAACCATCAAGCTAGTCACTAG 57.670 43.478 7.56 7.56 37.16 2.57
540 1319 4.160439 TCAACCATCAAGCTAGTCACTAGG 59.840 45.833 13.95 0.00 34.88 3.02
541 1320 3.982516 ACCATCAAGCTAGTCACTAGGA 58.017 45.455 13.95 3.01 34.88 2.94
542 1321 4.353777 ACCATCAAGCTAGTCACTAGGAA 58.646 43.478 13.95 0.00 34.88 3.36
543 1322 4.404073 ACCATCAAGCTAGTCACTAGGAAG 59.596 45.833 13.95 0.09 34.88 3.46
544 1323 4.367450 CATCAAGCTAGTCACTAGGAAGC 58.633 47.826 13.95 1.26 34.88 3.86
545 1324 3.702792 TCAAGCTAGTCACTAGGAAGCT 58.297 45.455 13.95 3.87 45.12 3.74
546 1325 4.856509 TCAAGCTAGTCACTAGGAAGCTA 58.143 43.478 13.95 0.00 42.49 3.32
547 1326 4.641094 TCAAGCTAGTCACTAGGAAGCTAC 59.359 45.833 13.95 0.00 42.49 3.58
548 1327 3.207778 AGCTAGTCACTAGGAAGCTACG 58.792 50.000 13.95 0.00 41.56 3.51
549 1328 2.944349 GCTAGTCACTAGGAAGCTACGT 59.056 50.000 13.95 0.00 34.88 3.57
550 1329 4.125703 GCTAGTCACTAGGAAGCTACGTA 58.874 47.826 13.95 0.00 34.88 3.57
551 1330 4.756135 GCTAGTCACTAGGAAGCTACGTAT 59.244 45.833 13.95 0.00 34.88 3.06
552 1331 5.106987 GCTAGTCACTAGGAAGCTACGTATC 60.107 48.000 13.95 0.00 34.88 2.24
553 1332 4.778579 AGTCACTAGGAAGCTACGTATCA 58.221 43.478 0.00 0.00 0.00 2.15
554 1333 4.575645 AGTCACTAGGAAGCTACGTATCAC 59.424 45.833 0.00 0.00 0.00 3.06
555 1334 4.334759 GTCACTAGGAAGCTACGTATCACA 59.665 45.833 0.00 0.00 0.00 3.58
556 1335 5.008811 GTCACTAGGAAGCTACGTATCACAT 59.991 44.000 0.00 0.00 0.00 3.21
557 1336 5.238868 TCACTAGGAAGCTACGTATCACATC 59.761 44.000 0.00 0.00 0.00 3.06
558 1337 3.627732 AGGAAGCTACGTATCACATCG 57.372 47.619 0.00 0.00 0.00 3.84
559 1338 3.211865 AGGAAGCTACGTATCACATCGA 58.788 45.455 0.00 0.00 0.00 3.59
560 1339 3.251245 AGGAAGCTACGTATCACATCGAG 59.749 47.826 0.00 0.00 0.00 4.04
561 1340 2.690173 AGCTACGTATCACATCGAGC 57.310 50.000 0.00 0.00 33.80 5.03
562 1341 1.267261 AGCTACGTATCACATCGAGCC 59.733 52.381 0.00 0.00 33.96 4.70
563 1342 1.001706 GCTACGTATCACATCGAGCCA 60.002 52.381 0.00 0.00 0.00 4.75
564 1343 2.918549 GCTACGTATCACATCGAGCCAG 60.919 54.545 0.00 0.00 0.00 4.85
565 1344 0.249073 ACGTATCACATCGAGCCAGC 60.249 55.000 0.00 0.00 0.00 4.85
566 1345 0.941463 CGTATCACATCGAGCCAGCC 60.941 60.000 0.00 0.00 0.00 4.85
567 1346 0.104855 GTATCACATCGAGCCAGCCA 59.895 55.000 0.00 0.00 0.00 4.75
568 1347 0.390492 TATCACATCGAGCCAGCCAG 59.610 55.000 0.00 0.00 0.00 4.85
569 1348 2.937379 ATCACATCGAGCCAGCCAGC 62.937 60.000 0.00 0.00 0.00 4.85
570 1349 3.709633 ACATCGAGCCAGCCAGCA 61.710 61.111 0.00 0.00 34.23 4.41
571 1350 2.203167 CATCGAGCCAGCCAGCAT 60.203 61.111 0.00 0.00 34.23 3.79
572 1351 1.822613 CATCGAGCCAGCCAGCATT 60.823 57.895 0.00 0.00 34.23 3.56
573 1352 1.525535 ATCGAGCCAGCCAGCATTC 60.526 57.895 0.00 0.00 34.23 2.67
574 1353 3.570638 CGAGCCAGCCAGCATTCG 61.571 66.667 0.00 0.00 34.23 3.34
575 1354 3.207669 GAGCCAGCCAGCATTCGG 61.208 66.667 0.00 0.00 34.23 4.30
576 1355 3.984193 GAGCCAGCCAGCATTCGGT 62.984 63.158 0.00 0.00 34.23 4.69
577 1356 3.512516 GCCAGCCAGCATTCGGTC 61.513 66.667 0.00 0.00 0.00 4.79
578 1357 2.046023 CCAGCCAGCATTCGGTCA 60.046 61.111 0.00 0.00 0.00 4.02
579 1358 2.401766 CCAGCCAGCATTCGGTCAC 61.402 63.158 0.00 0.00 0.00 3.67
580 1359 1.672030 CAGCCAGCATTCGGTCACA 60.672 57.895 0.00 0.00 0.00 3.58
581 1360 1.028330 CAGCCAGCATTCGGTCACAT 61.028 55.000 0.00 0.00 0.00 3.21
582 1361 0.322816 AGCCAGCATTCGGTCACATT 60.323 50.000 0.00 0.00 0.00 2.71
583 1362 0.099436 GCCAGCATTCGGTCACATTC 59.901 55.000 0.00 0.00 0.00 2.67
584 1363 1.452110 CCAGCATTCGGTCACATTCA 58.548 50.000 0.00 0.00 0.00 2.57
585 1364 1.811965 CCAGCATTCGGTCACATTCAA 59.188 47.619 0.00 0.00 0.00 2.69
586 1365 2.424601 CCAGCATTCGGTCACATTCAAT 59.575 45.455 0.00 0.00 0.00 2.57
587 1366 3.431856 CAGCATTCGGTCACATTCAATG 58.568 45.455 0.00 0.00 0.00 2.82
588 1367 3.084039 AGCATTCGGTCACATTCAATGT 58.916 40.909 0.00 0.00 46.22 2.71
597 1376 2.665649 ACATTCAATGTGCAGGCATG 57.334 45.000 0.98 0.00 43.01 4.06
598 1377 1.897133 ACATTCAATGTGCAGGCATGT 59.103 42.857 0.98 0.00 43.01 3.21
599 1378 2.300723 ACATTCAATGTGCAGGCATGTT 59.699 40.909 0.98 0.00 43.01 2.71
600 1379 3.244284 ACATTCAATGTGCAGGCATGTTT 60.244 39.130 0.98 0.00 43.01 2.83
601 1380 4.021280 ACATTCAATGTGCAGGCATGTTTA 60.021 37.500 0.98 0.00 43.01 2.01
602 1381 4.597404 TTCAATGTGCAGGCATGTTTAA 57.403 36.364 0.00 0.00 0.00 1.52
603 1382 3.911868 TCAATGTGCAGGCATGTTTAAC 58.088 40.909 0.00 0.00 0.00 2.01
604 1383 3.320256 TCAATGTGCAGGCATGTTTAACA 59.680 39.130 0.00 0.00 0.00 2.41
605 1384 2.791383 TGTGCAGGCATGTTTAACAC 57.209 45.000 0.00 0.00 0.00 3.32
606 1385 2.027385 TGTGCAGGCATGTTTAACACA 58.973 42.857 0.00 2.25 40.71 3.72
607 1386 2.428530 TGTGCAGGCATGTTTAACACAA 59.571 40.909 0.00 0.00 39.50 3.33
608 1387 3.118992 TGTGCAGGCATGTTTAACACAAA 60.119 39.130 0.00 0.00 39.50 2.83
609 1388 3.490526 GTGCAGGCATGTTTAACACAAAG 59.509 43.478 0.00 0.00 39.50 2.77
610 1389 3.382865 TGCAGGCATGTTTAACACAAAGA 59.617 39.130 0.00 0.00 39.50 2.52
611 1390 4.039004 TGCAGGCATGTTTAACACAAAGAT 59.961 37.500 0.00 0.00 39.50 2.40
612 1391 4.386652 GCAGGCATGTTTAACACAAAGATG 59.613 41.667 0.00 0.00 39.50 2.90
613 1392 5.771469 CAGGCATGTTTAACACAAAGATGA 58.229 37.500 0.00 0.00 39.50 2.92
614 1393 5.860182 CAGGCATGTTTAACACAAAGATGAG 59.140 40.000 0.00 0.00 39.50 2.90
615 1394 4.622740 GGCATGTTTAACACAAAGATGAGC 59.377 41.667 0.00 0.00 39.50 4.26
616 1395 4.622740 GCATGTTTAACACAAAGATGAGCC 59.377 41.667 0.00 0.00 39.50 4.70
617 1396 4.481930 TGTTTAACACAAAGATGAGCCG 57.518 40.909 0.00 0.00 29.87 5.52
618 1397 3.252215 TGTTTAACACAAAGATGAGCCGG 59.748 43.478 0.00 0.00 29.87 6.13
619 1398 3.410631 TTAACACAAAGATGAGCCGGA 57.589 42.857 5.05 0.00 0.00 5.14
620 1399 2.270352 AACACAAAGATGAGCCGGAA 57.730 45.000 5.05 0.00 0.00 4.30
621 1400 1.523758 ACACAAAGATGAGCCGGAAC 58.476 50.000 5.05 0.00 0.00 3.62
643 1422 8.988934 GGAACGTTAGCTGAATGATTTATATGA 58.011 33.333 0.00 0.00 0.00 2.15
646 1425 9.547753 ACGTTAGCTGAATGATTTATATGAAGT 57.452 29.630 0.00 0.00 0.00 3.01
690 1469 6.356757 GCTAACTAGCTCTCCAATTTCAAG 57.643 41.667 0.00 0.00 45.62 3.02
691 1470 5.877564 GCTAACTAGCTCTCCAATTTCAAGT 59.122 40.000 0.00 0.00 45.62 3.16
692 1471 7.042335 GCTAACTAGCTCTCCAATTTCAAGTA 58.958 38.462 0.00 0.00 45.62 2.24
693 1472 7.549488 GCTAACTAGCTCTCCAATTTCAAGTAA 59.451 37.037 0.00 0.00 45.62 2.24
694 1473 7.913674 AACTAGCTCTCCAATTTCAAGTAAG 57.086 36.000 0.00 0.00 0.00 2.34
695 1474 7.246171 ACTAGCTCTCCAATTTCAAGTAAGA 57.754 36.000 0.00 0.00 0.00 2.10
696 1475 7.856415 ACTAGCTCTCCAATTTCAAGTAAGAT 58.144 34.615 0.00 0.00 0.00 2.40
697 1476 8.982723 ACTAGCTCTCCAATTTCAAGTAAGATA 58.017 33.333 0.00 0.00 0.00 1.98
698 1477 9.474920 CTAGCTCTCCAATTTCAAGTAAGATAG 57.525 37.037 0.00 0.00 0.00 2.08
699 1478 7.278875 AGCTCTCCAATTTCAAGTAAGATAGG 58.721 38.462 0.00 0.00 0.00 2.57
700 1479 7.126421 AGCTCTCCAATTTCAAGTAAGATAGGA 59.874 37.037 0.00 0.00 0.00 2.94
701 1480 7.440856 GCTCTCCAATTTCAAGTAAGATAGGAG 59.559 40.741 0.00 0.00 40.10 3.69
702 1481 7.275920 TCTCCAATTTCAAGTAAGATAGGAGC 58.724 38.462 0.00 0.00 38.95 4.70
703 1482 6.357367 TCCAATTTCAAGTAAGATAGGAGCC 58.643 40.000 0.00 0.00 0.00 4.70
704 1483 6.069673 TCCAATTTCAAGTAAGATAGGAGCCA 60.070 38.462 0.00 0.00 0.00 4.75
705 1484 6.774656 CCAATTTCAAGTAAGATAGGAGCCAT 59.225 38.462 0.00 0.00 0.00 4.40
706 1485 7.939039 CCAATTTCAAGTAAGATAGGAGCCATA 59.061 37.037 0.00 0.00 0.00 2.74
707 1486 9.342308 CAATTTCAAGTAAGATAGGAGCCATAA 57.658 33.333 0.00 0.00 0.00 1.90
710 1489 8.908786 TTCAAGTAAGATAGGAGCCATAATTG 57.091 34.615 0.00 0.00 0.00 2.32
711 1490 8.262601 TCAAGTAAGATAGGAGCCATAATTGA 57.737 34.615 0.00 0.00 0.00 2.57
712 1491 8.713971 TCAAGTAAGATAGGAGCCATAATTGAA 58.286 33.333 0.00 0.00 28.30 2.69
713 1492 8.778358 CAAGTAAGATAGGAGCCATAATTGAAC 58.222 37.037 0.00 0.00 0.00 3.18
714 1493 7.155328 AGTAAGATAGGAGCCATAATTGAACG 58.845 38.462 0.00 0.00 0.00 3.95
715 1494 5.808366 AGATAGGAGCCATAATTGAACGA 57.192 39.130 0.00 0.00 0.00 3.85
716 1495 5.788450 AGATAGGAGCCATAATTGAACGAG 58.212 41.667 0.00 0.00 0.00 4.18
717 1496 5.540337 AGATAGGAGCCATAATTGAACGAGA 59.460 40.000 0.00 0.00 0.00 4.04
718 1497 4.487714 AGGAGCCATAATTGAACGAGAA 57.512 40.909 0.00 0.00 0.00 2.87
719 1498 5.041191 AGGAGCCATAATTGAACGAGAAT 57.959 39.130 0.00 0.00 0.00 2.40
720 1499 5.440610 AGGAGCCATAATTGAACGAGAATT 58.559 37.500 0.00 0.00 0.00 2.17
721 1500 5.297776 AGGAGCCATAATTGAACGAGAATTG 59.702 40.000 0.00 0.00 0.00 2.32
722 1501 5.066505 GGAGCCATAATTGAACGAGAATTGT 59.933 40.000 0.00 0.00 0.00 2.71
723 1502 5.883661 AGCCATAATTGAACGAGAATTGTG 58.116 37.500 0.00 0.00 33.82 3.33
724 1503 5.036737 GCCATAATTGAACGAGAATTGTGG 58.963 41.667 19.73 19.73 46.78 4.17
725 1504 5.036737 CCATAATTGAACGAGAATTGTGGC 58.963 41.667 15.51 0.00 41.95 5.01
726 1505 2.900122 ATTGAACGAGAATTGTGGCG 57.100 45.000 0.00 0.00 29.05 5.69
727 1506 1.872388 TTGAACGAGAATTGTGGCGA 58.128 45.000 0.00 0.00 29.05 5.54
728 1507 1.428448 TGAACGAGAATTGTGGCGAG 58.572 50.000 0.00 0.00 29.05 5.03
729 1508 1.270094 TGAACGAGAATTGTGGCGAGT 60.270 47.619 0.00 0.00 29.05 4.18
730 1509 2.029739 TGAACGAGAATTGTGGCGAGTA 60.030 45.455 0.00 0.00 29.05 2.59
731 1510 2.961526 ACGAGAATTGTGGCGAGTAT 57.038 45.000 0.00 0.00 0.00 2.12
732 1511 3.247006 ACGAGAATTGTGGCGAGTATT 57.753 42.857 0.00 0.00 0.00 1.89
742 1521 1.287425 GGCGAGTATTTGGAGGAACG 58.713 55.000 0.00 0.00 0.00 3.95
744 1523 2.344025 GCGAGTATTTGGAGGAACGTT 58.656 47.619 0.00 0.00 0.00 3.99
754 1538 9.189723 GTATTTGGAGGAACGTTGTATATACTC 57.810 37.037 5.00 0.00 0.00 2.59
757 1541 5.533903 TGGAGGAACGTTGTATATACTCCTC 59.466 44.000 25.94 25.94 42.77 3.71
762 1546 8.654997 AGGAACGTTGTATATACTCCTCTACTA 58.345 37.037 5.00 0.00 0.00 1.82
855 1639 0.034896 CATAATTAGCCCGCGGAGGT 59.965 55.000 30.73 23.91 38.74 3.85
946 1731 5.717119 TCCTCGTTCTGTCCAACTAATTAC 58.283 41.667 0.00 0.00 0.00 1.89
957 1742 3.301388 CCAACTAATTACTACGCGCGTTC 60.301 47.826 42.10 0.00 0.00 3.95
1048 1833 1.952133 GCGCACCTGACGTGTAACA 60.952 57.895 0.30 0.00 44.97 2.41
1269 2069 3.424105 GAAGGGGAGGGGCAGCAT 61.424 66.667 0.00 0.00 0.00 3.79
1270 2070 3.424105 AAGGGGAGGGGCAGCATC 61.424 66.667 0.00 0.00 0.00 3.91
1271 2071 4.765970 AGGGGAGGGGCAGCATCA 62.766 66.667 0.00 0.00 0.00 3.07
1272 2072 4.201122 GGGGAGGGGCAGCATCAG 62.201 72.222 0.00 0.00 0.00 2.90
1273 2073 4.891037 GGGAGGGGCAGCATCAGC 62.891 72.222 0.00 0.00 42.56 4.26
1274 2074 4.119363 GGAGGGGCAGCATCAGCA 62.119 66.667 0.00 0.00 45.49 4.41
1275 2075 2.516460 GAGGGGCAGCATCAGCAG 60.516 66.667 0.00 0.00 45.49 4.24
1282 2082 1.429825 CAGCATCAGCAGCAGAAGC 59.570 57.895 6.90 6.90 45.49 3.86
1283 2083 1.002502 AGCATCAGCAGCAGAAGCA 60.003 52.632 16.23 0.00 45.49 3.91
1284 2084 1.027255 AGCATCAGCAGCAGAAGCAG 61.027 55.000 16.23 0.00 45.49 4.24
1285 2085 1.025113 GCATCAGCAGCAGAAGCAGA 61.025 55.000 9.89 0.00 45.49 4.26
1286 2086 1.669604 CATCAGCAGCAGAAGCAGAT 58.330 50.000 0.00 0.00 45.49 2.90
1478 2281 1.682684 GGAGCTTCGAGGACCTCCA 60.683 63.158 16.13 0.00 42.66 3.86
1500 2303 3.358707 GGCAACAACGCCGCCTAA 61.359 61.111 0.00 0.00 43.52 2.69
1507 2310 2.652095 AACGCCGCCTAAGCACCTA 61.652 57.895 0.00 0.00 39.83 3.08
1509 2312 1.956170 CGCCGCCTAAGCACCTATG 60.956 63.158 0.00 0.00 39.83 2.23
1510 2313 1.146263 GCCGCCTAAGCACCTATGT 59.854 57.895 0.00 0.00 39.83 2.29
1517 2320 5.761234 CCGCCTAAGCACCTATGTAAAATAA 59.239 40.000 0.00 0.00 39.83 1.40
1649 2452 0.313043 CCGATTGGCCTGCATCAATC 59.687 55.000 19.23 19.23 43.26 2.67
1712 2515 6.920758 TCTCCATTCGGTTAACAACAAATTTG 59.079 34.615 16.67 16.67 0.00 2.32
1716 2519 7.863375 CCATTCGGTTAACAACAAATTTGTCTA 59.137 33.333 23.47 12.64 41.31 2.59
1800 2605 7.657354 TCTCTATGGTGCAATGTACATATGAAC 59.343 37.037 9.21 13.29 0.00 3.18
1801 2606 7.278875 TCTATGGTGCAATGTACATATGAACA 58.721 34.615 21.05 13.13 0.00 3.18
1803 2608 6.772360 TGGTGCAATGTACATATGAACATT 57.228 33.333 21.05 2.09 44.94 2.71
1819 2624 6.926280 TGAACATTATTCATTGTTGCGAAC 57.074 33.333 0.00 0.00 36.25 3.95
1850 2655 5.997129 CCATTTTTCATACCCAACTTGCTTT 59.003 36.000 0.00 0.00 0.00 3.51
1894 2699 5.198602 AGAAAATGAAGGGTAGGCTCAAT 57.801 39.130 0.00 0.00 0.00 2.57
1913 2718 4.151689 TCAATTGAACGGCGAGAAAACTAG 59.848 41.667 16.62 0.00 0.00 2.57
2135 2999 5.670361 ACAATAGCAAAGGGAAGGGTATCTA 59.330 40.000 0.00 0.00 0.00 1.98
2425 3361 1.446272 GTAGACTCGCCGCTGCTTT 60.446 57.895 0.00 0.00 34.43 3.51
2432 3368 3.294493 GCCGCTGCTTTGGACCAA 61.294 61.111 1.69 1.69 33.53 3.67
2433 3369 2.855514 GCCGCTGCTTTGGACCAAA 61.856 57.895 18.59 18.59 33.53 3.28
2445 3381 5.413309 TTTGGACCAAAGATTGTTGTTGT 57.587 34.783 15.89 0.00 0.00 3.32
2446 3382 5.413309 TTGGACCAAAGATTGTTGTTGTT 57.587 34.783 3.84 0.00 0.00 2.83
2447 3383 4.753233 TGGACCAAAGATTGTTGTTGTTG 58.247 39.130 0.00 0.00 0.00 3.33
2448 3384 4.221703 TGGACCAAAGATTGTTGTTGTTGT 59.778 37.500 0.00 0.00 0.00 3.32
2449 3385 5.175127 GGACCAAAGATTGTTGTTGTTGTT 58.825 37.500 0.00 0.00 0.00 2.83
2450 3386 5.063312 GGACCAAAGATTGTTGTTGTTGTTG 59.937 40.000 0.00 0.00 0.00 3.33
2451 3387 5.546526 ACCAAAGATTGTTGTTGTTGTTGT 58.453 33.333 0.00 0.00 0.00 3.32
2452 3388 5.994668 ACCAAAGATTGTTGTTGTTGTTGTT 59.005 32.000 0.00 0.00 0.00 2.83
2453 3389 6.073331 ACCAAAGATTGTTGTTGTTGTTGTTG 60.073 34.615 0.00 0.00 0.00 3.33
2454 3390 6.305639 CAAAGATTGTTGTTGTTGTTGTTGG 58.694 36.000 0.00 0.00 0.00 3.77
2455 3391 5.398603 AGATTGTTGTTGTTGTTGTTGGA 57.601 34.783 0.00 0.00 0.00 3.53
2456 3392 5.788450 AGATTGTTGTTGTTGTTGTTGGAA 58.212 33.333 0.00 0.00 0.00 3.53
2457 3393 6.405538 AGATTGTTGTTGTTGTTGTTGGAAT 58.594 32.000 0.00 0.00 0.00 3.01
2458 3394 6.534793 AGATTGTTGTTGTTGTTGTTGGAATC 59.465 34.615 0.00 0.00 0.00 2.52
2459 3395 4.499183 TGTTGTTGTTGTTGTTGGAATCC 58.501 39.130 0.00 0.00 0.00 3.01
2460 3396 3.810310 TGTTGTTGTTGTTGGAATCCC 57.190 42.857 0.00 0.00 0.00 3.85
2461 3397 3.099905 TGTTGTTGTTGTTGGAATCCCA 58.900 40.909 0.00 0.00 41.64 4.37
2476 3412 7.135591 TGGAATCCCAAAACAAGAAAAATCT 57.864 32.000 0.00 0.00 40.09 2.40
2477 3413 6.991531 TGGAATCCCAAAACAAGAAAAATCTG 59.008 34.615 0.00 0.00 40.09 2.90
2478 3414 6.992123 GGAATCCCAAAACAAGAAAAATCTGT 59.008 34.615 0.00 0.00 0.00 3.41
2479 3415 8.147704 GGAATCCCAAAACAAGAAAAATCTGTA 58.852 33.333 0.00 0.00 0.00 2.74
2480 3416 9.196552 GAATCCCAAAACAAGAAAAATCTGTAG 57.803 33.333 0.00 0.00 0.00 2.74
2481 3417 7.889873 TCCCAAAACAAGAAAAATCTGTAGA 57.110 32.000 0.00 0.00 0.00 2.59
2482 3418 7.712797 TCCCAAAACAAGAAAAATCTGTAGAC 58.287 34.615 0.00 0.00 0.00 2.59
2483 3419 7.340743 TCCCAAAACAAGAAAAATCTGTAGACA 59.659 33.333 0.00 0.00 0.00 3.41
2484 3420 7.649306 CCCAAAACAAGAAAAATCTGTAGACAG 59.351 37.037 3.12 3.12 45.08 3.51
2495 3431 2.911484 CTGTAGACAGATCCTTTGGGC 58.089 52.381 3.45 0.00 46.59 5.36
2496 3432 1.559682 TGTAGACAGATCCTTTGGGCC 59.440 52.381 0.00 0.00 0.00 5.80
2497 3433 1.840635 GTAGACAGATCCTTTGGGCCT 59.159 52.381 4.53 0.00 0.00 5.19
2498 3434 1.376649 AGACAGATCCTTTGGGCCTT 58.623 50.000 4.53 0.00 0.00 4.35
2499 3435 1.713078 AGACAGATCCTTTGGGCCTTT 59.287 47.619 4.53 0.00 0.00 3.11
2500 3436 2.095461 GACAGATCCTTTGGGCCTTTC 58.905 52.381 4.53 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.228258 ACATAGACCACGTTGTAACAAAGAT 58.772 36.000 0.00 0.00 0.00 2.40
21 22 5.358090 TGAAACATAGACCACGTTGTAACA 58.642 37.500 0.00 0.00 0.00 2.41
48 49 1.381872 ACAGGGTAGCAGCCGAGAT 60.382 57.895 0.00 0.00 41.56 2.75
128 129 4.901123 TGTGACGCGTGTGTGGGG 62.901 66.667 20.70 0.00 0.00 4.96
229 989 2.738213 AAGGAACAGGCAGTGCGAGG 62.738 60.000 9.45 3.31 0.00 4.63
245 1005 3.796504 GCAACACAGGTCATGTTCAAAGG 60.797 47.826 0.00 0.00 41.41 3.11
275 1035 2.645730 TTTTACAATGCGGGTCATGC 57.354 45.000 0.00 0.00 35.13 4.06
284 1044 4.925068 AGCTCATTCGGATTTTACAATGC 58.075 39.130 0.00 0.00 0.00 3.56
337 1099 1.880601 GCAAGTCGTGTCGTCTGCTG 61.881 60.000 0.00 0.00 0.00 4.41
360 1122 2.031682 GCTCAGTCAGATTTTGCAACGT 60.032 45.455 0.00 0.00 0.00 3.99
375 1154 1.123861 TGTCCTTGCAGGAGCTCAGT 61.124 55.000 17.19 0.00 46.90 3.41
383 1162 1.162698 CTGACACATGTCCTTGCAGG 58.837 55.000 9.48 0.00 44.15 4.85
386 1165 1.878775 GCCTGACACATGTCCTTGC 59.121 57.895 9.48 5.80 44.15 4.01
421 1200 4.724602 TCTCAGCTGCGTCGTGCC 62.725 66.667 9.47 0.00 45.60 5.01
422 1201 3.177920 CTCTCAGCTGCGTCGTGC 61.178 66.667 9.47 4.59 46.70 5.34
423 1202 3.177920 GCTCTCAGCTGCGTCGTG 61.178 66.667 9.47 0.00 38.45 4.35
433 1212 6.876257 TCTTTTAGAAAAAGGCTAGCTCTCAG 59.124 38.462 15.72 6.54 0.00 3.35
468 1247 3.334583 AGCTCTCTTGATTACCGCAAA 57.665 42.857 0.00 0.00 0.00 3.68
470 1249 3.334583 AAAGCTCTCTTGATTACCGCA 57.665 42.857 0.00 0.00 31.78 5.69
472 1251 8.649973 ATTTAGTAAAGCTCTCTTGATTACCG 57.350 34.615 1.21 0.00 31.78 4.02
473 1252 9.601217 TGATTTAGTAAAGCTCTCTTGATTACC 57.399 33.333 11.85 0.00 31.78 2.85
477 1256 7.279758 GCTGTGATTTAGTAAAGCTCTCTTGAT 59.720 37.037 11.85 0.00 31.78 2.57
479 1258 6.369890 TGCTGTGATTTAGTAAAGCTCTCTTG 59.630 38.462 11.85 3.20 31.78 3.02
480 1259 6.467677 TGCTGTGATTTAGTAAAGCTCTCTT 58.532 36.000 11.85 0.00 0.00 2.85
481 1260 6.042638 TGCTGTGATTTAGTAAAGCTCTCT 57.957 37.500 11.85 0.00 0.00 3.10
482 1261 6.035542 GTCTGCTGTGATTTAGTAAAGCTCTC 59.964 42.308 11.85 5.88 0.00 3.20
483 1262 5.872070 GTCTGCTGTGATTTAGTAAAGCTCT 59.128 40.000 11.85 0.00 0.00 4.09
484 1263 5.064071 GGTCTGCTGTGATTTAGTAAAGCTC 59.936 44.000 11.85 8.87 0.00 4.09
485 1264 4.938226 GGTCTGCTGTGATTTAGTAAAGCT 59.062 41.667 11.85 0.00 0.00 3.74
486 1265 4.938226 AGGTCTGCTGTGATTTAGTAAAGC 59.062 41.667 3.90 3.90 0.00 3.51
487 1266 6.758886 CCTAGGTCTGCTGTGATTTAGTAAAG 59.241 42.308 0.00 0.00 0.00 1.85
488 1267 6.439375 TCCTAGGTCTGCTGTGATTTAGTAAA 59.561 38.462 9.08 0.00 0.00 2.01
489 1268 5.955959 TCCTAGGTCTGCTGTGATTTAGTAA 59.044 40.000 9.08 0.00 0.00 2.24
490 1269 5.360144 GTCCTAGGTCTGCTGTGATTTAGTA 59.640 44.000 9.08 0.00 0.00 1.82
491 1270 4.160626 GTCCTAGGTCTGCTGTGATTTAGT 59.839 45.833 9.08 0.00 0.00 2.24
492 1271 4.160439 TGTCCTAGGTCTGCTGTGATTTAG 59.840 45.833 9.08 0.00 0.00 1.85
493 1272 4.093743 TGTCCTAGGTCTGCTGTGATTTA 58.906 43.478 9.08 0.00 0.00 1.40
494 1273 2.906389 TGTCCTAGGTCTGCTGTGATTT 59.094 45.455 9.08 0.00 0.00 2.17
495 1274 2.540383 TGTCCTAGGTCTGCTGTGATT 58.460 47.619 9.08 0.00 0.00 2.57
496 1275 2.238084 TGTCCTAGGTCTGCTGTGAT 57.762 50.000 9.08 0.00 0.00 3.06
497 1276 2.009681 TTGTCCTAGGTCTGCTGTGA 57.990 50.000 9.08 0.00 0.00 3.58
498 1277 2.234661 TGATTGTCCTAGGTCTGCTGTG 59.765 50.000 9.08 0.00 0.00 3.66
499 1278 2.540383 TGATTGTCCTAGGTCTGCTGT 58.460 47.619 9.08 0.00 0.00 4.40
500 1279 3.265791 GTTGATTGTCCTAGGTCTGCTG 58.734 50.000 9.08 0.00 0.00 4.41
501 1280 2.237392 GGTTGATTGTCCTAGGTCTGCT 59.763 50.000 9.08 0.00 0.00 4.24
502 1281 2.027192 TGGTTGATTGTCCTAGGTCTGC 60.027 50.000 9.08 0.00 0.00 4.26
503 1282 3.981071 TGGTTGATTGTCCTAGGTCTG 57.019 47.619 9.08 0.00 0.00 3.51
504 1283 4.104086 TGATGGTTGATTGTCCTAGGTCT 58.896 43.478 9.08 0.00 0.00 3.85
505 1284 4.487714 TGATGGTTGATTGTCCTAGGTC 57.512 45.455 9.08 3.43 0.00 3.85
506 1285 4.848357 CTTGATGGTTGATTGTCCTAGGT 58.152 43.478 9.08 0.00 0.00 3.08
507 1286 3.629398 GCTTGATGGTTGATTGTCCTAGG 59.371 47.826 0.82 0.82 0.00 3.02
508 1287 4.521146 AGCTTGATGGTTGATTGTCCTAG 58.479 43.478 0.00 0.00 0.00 3.02
509 1288 4.574674 AGCTTGATGGTTGATTGTCCTA 57.425 40.909 0.00 0.00 0.00 2.94
510 1289 3.446442 AGCTTGATGGTTGATTGTCCT 57.554 42.857 0.00 0.00 0.00 3.85
511 1290 4.265073 ACTAGCTTGATGGTTGATTGTCC 58.735 43.478 1.04 0.00 0.00 4.02
512 1291 4.937620 TGACTAGCTTGATGGTTGATTGTC 59.062 41.667 1.04 0.00 0.00 3.18
513 1292 4.697352 GTGACTAGCTTGATGGTTGATTGT 59.303 41.667 1.04 0.00 0.00 2.71
514 1293 4.940046 AGTGACTAGCTTGATGGTTGATTG 59.060 41.667 1.04 0.00 0.00 2.67
515 1294 5.171339 AGTGACTAGCTTGATGGTTGATT 57.829 39.130 1.04 0.00 0.00 2.57
516 1295 4.833478 AGTGACTAGCTTGATGGTTGAT 57.167 40.909 1.04 0.00 0.00 2.57
517 1296 4.160439 CCTAGTGACTAGCTTGATGGTTGA 59.840 45.833 14.06 0.00 33.12 3.18
518 1297 4.160439 TCCTAGTGACTAGCTTGATGGTTG 59.840 45.833 14.06 0.00 33.12 3.77
519 1298 4.353777 TCCTAGTGACTAGCTTGATGGTT 58.646 43.478 14.06 0.00 33.12 3.67
520 1299 3.982516 TCCTAGTGACTAGCTTGATGGT 58.017 45.455 14.06 0.00 33.12 3.55
521 1300 4.739137 GCTTCCTAGTGACTAGCTTGATGG 60.739 50.000 14.06 0.00 33.12 3.51
522 1301 4.099266 AGCTTCCTAGTGACTAGCTTGATG 59.901 45.833 14.06 9.28 38.99 3.07
523 1302 4.285863 AGCTTCCTAGTGACTAGCTTGAT 58.714 43.478 14.06 2.06 38.99 2.57
524 1303 3.702792 AGCTTCCTAGTGACTAGCTTGA 58.297 45.455 14.06 3.73 38.99 3.02
525 1304 4.496673 CGTAGCTTCCTAGTGACTAGCTTG 60.497 50.000 14.06 6.82 41.93 4.01
526 1305 3.628487 CGTAGCTTCCTAGTGACTAGCTT 59.372 47.826 14.06 0.48 41.93 3.74
527 1306 3.207778 CGTAGCTTCCTAGTGACTAGCT 58.792 50.000 14.06 12.85 43.93 3.32
528 1307 2.944349 ACGTAGCTTCCTAGTGACTAGC 59.056 50.000 14.06 5.54 33.12 3.42
529 1308 5.990386 TGATACGTAGCTTCCTAGTGACTAG 59.010 44.000 12.62 12.62 34.16 2.57
530 1309 5.757320 GTGATACGTAGCTTCCTAGTGACTA 59.243 44.000 12.66 0.00 0.00 2.59
531 1310 4.575645 GTGATACGTAGCTTCCTAGTGACT 59.424 45.833 12.66 0.00 0.00 3.41
532 1311 4.334759 TGTGATACGTAGCTTCCTAGTGAC 59.665 45.833 12.66 0.00 0.00 3.67
533 1312 4.520179 TGTGATACGTAGCTTCCTAGTGA 58.480 43.478 12.66 0.00 0.00 3.41
534 1313 4.895224 TGTGATACGTAGCTTCCTAGTG 57.105 45.455 12.66 0.00 0.00 2.74
535 1314 4.213694 CGATGTGATACGTAGCTTCCTAGT 59.786 45.833 12.66 0.00 0.00 2.57
536 1315 4.451435 TCGATGTGATACGTAGCTTCCTAG 59.549 45.833 12.66 0.02 0.00 3.02
537 1316 4.383173 TCGATGTGATACGTAGCTTCCTA 58.617 43.478 12.66 0.00 0.00 2.94
538 1317 3.211865 TCGATGTGATACGTAGCTTCCT 58.788 45.455 12.66 0.00 0.00 3.36
539 1318 3.556513 CTCGATGTGATACGTAGCTTCC 58.443 50.000 12.66 0.90 0.00 3.46
540 1319 2.974536 GCTCGATGTGATACGTAGCTTC 59.025 50.000 12.66 6.07 33.57 3.86
541 1320 2.287668 GGCTCGATGTGATACGTAGCTT 60.288 50.000 12.66 0.00 35.17 3.74
542 1321 1.267261 GGCTCGATGTGATACGTAGCT 59.733 52.381 12.66 0.00 35.17 3.32
543 1322 1.001706 TGGCTCGATGTGATACGTAGC 60.002 52.381 3.32 3.32 34.60 3.58
544 1323 2.918549 GCTGGCTCGATGTGATACGTAG 60.919 54.545 0.08 0.00 0.00 3.51
545 1324 1.001706 GCTGGCTCGATGTGATACGTA 60.002 52.381 0.00 0.00 0.00 3.57
546 1325 0.249073 GCTGGCTCGATGTGATACGT 60.249 55.000 0.00 0.00 0.00 3.57
547 1326 0.941463 GGCTGGCTCGATGTGATACG 60.941 60.000 0.00 0.00 0.00 3.06
548 1327 0.104855 TGGCTGGCTCGATGTGATAC 59.895 55.000 2.00 0.00 0.00 2.24
549 1328 0.390492 CTGGCTGGCTCGATGTGATA 59.610 55.000 2.00 0.00 0.00 2.15
550 1329 1.145598 CTGGCTGGCTCGATGTGAT 59.854 57.895 2.00 0.00 0.00 3.06
551 1330 2.580815 CTGGCTGGCTCGATGTGA 59.419 61.111 2.00 0.00 0.00 3.58
552 1331 3.200593 GCTGGCTGGCTCGATGTG 61.201 66.667 2.00 0.00 0.00 3.21
553 1332 2.547640 AATGCTGGCTGGCTCGATGT 62.548 55.000 2.00 0.00 0.00 3.06
554 1333 1.783031 GAATGCTGGCTGGCTCGATG 61.783 60.000 2.00 0.00 0.00 3.84
555 1334 1.525535 GAATGCTGGCTGGCTCGAT 60.526 57.895 2.00 0.00 0.00 3.59
556 1335 2.124983 GAATGCTGGCTGGCTCGA 60.125 61.111 2.00 0.00 0.00 4.04
557 1336 3.570638 CGAATGCTGGCTGGCTCG 61.571 66.667 2.00 0.00 0.00 5.03
558 1337 3.207669 CCGAATGCTGGCTGGCTC 61.208 66.667 2.00 0.00 0.00 4.70
559 1338 3.984193 GACCGAATGCTGGCTGGCT 62.984 63.158 2.00 0.00 0.00 4.75
560 1339 3.512516 GACCGAATGCTGGCTGGC 61.513 66.667 0.00 0.00 0.00 4.85
561 1340 2.046023 TGACCGAATGCTGGCTGG 60.046 61.111 0.00 0.00 0.00 4.85
562 1341 1.028330 ATGTGACCGAATGCTGGCTG 61.028 55.000 0.00 0.00 0.00 4.85
563 1342 0.322816 AATGTGACCGAATGCTGGCT 60.323 50.000 0.00 0.00 0.00 4.75
564 1343 0.099436 GAATGTGACCGAATGCTGGC 59.901 55.000 0.00 0.00 0.00 4.85
565 1344 1.452110 TGAATGTGACCGAATGCTGG 58.548 50.000 0.00 0.00 0.00 4.85
566 1345 3.119743 ACATTGAATGTGACCGAATGCTG 60.120 43.478 10.45 0.00 43.01 4.41
567 1346 3.084039 ACATTGAATGTGACCGAATGCT 58.916 40.909 10.45 0.00 43.01 3.79
568 1347 3.492421 ACATTGAATGTGACCGAATGC 57.508 42.857 10.45 0.00 43.01 3.56
578 1357 1.897133 ACATGCCTGCACATTGAATGT 59.103 42.857 4.72 4.72 46.22 2.71
579 1358 2.665649 ACATGCCTGCACATTGAATG 57.334 45.000 3.16 3.16 0.00 2.67
580 1359 3.688694 AAACATGCCTGCACATTGAAT 57.311 38.095 0.00 0.00 0.00 2.57
581 1360 4.202192 TGTTAAACATGCCTGCACATTGAA 60.202 37.500 0.00 0.00 0.00 2.69
582 1361 3.320256 TGTTAAACATGCCTGCACATTGA 59.680 39.130 0.00 0.00 0.00 2.57
583 1362 3.429543 GTGTTAAACATGCCTGCACATTG 59.570 43.478 0.00 0.00 0.00 2.82
584 1363 3.069300 TGTGTTAAACATGCCTGCACATT 59.931 39.130 0.00 0.00 32.36 2.71
585 1364 2.627221 TGTGTTAAACATGCCTGCACAT 59.373 40.909 0.00 0.00 32.36 3.21
586 1365 2.027385 TGTGTTAAACATGCCTGCACA 58.973 42.857 0.00 0.00 32.36 4.57
587 1366 2.791383 TGTGTTAAACATGCCTGCAC 57.209 45.000 0.00 0.00 32.36 4.57
588 1367 3.382865 TCTTTGTGTTAAACATGCCTGCA 59.617 39.130 0.00 0.00 38.99 4.41
589 1368 3.976169 TCTTTGTGTTAAACATGCCTGC 58.024 40.909 0.00 0.00 38.99 4.85
590 1369 5.771469 TCATCTTTGTGTTAAACATGCCTG 58.229 37.500 0.00 0.00 38.99 4.85
591 1370 5.565439 GCTCATCTTTGTGTTAAACATGCCT 60.565 40.000 0.00 0.00 38.99 4.75
592 1371 4.622740 GCTCATCTTTGTGTTAAACATGCC 59.377 41.667 0.00 0.00 38.99 4.40
593 1372 4.622740 GGCTCATCTTTGTGTTAAACATGC 59.377 41.667 0.00 0.00 38.99 4.06
594 1373 4.853196 CGGCTCATCTTTGTGTTAAACATG 59.147 41.667 0.00 0.00 38.99 3.21
595 1374 4.082787 CCGGCTCATCTTTGTGTTAAACAT 60.083 41.667 0.00 0.00 38.99 2.71
596 1375 3.252215 CCGGCTCATCTTTGTGTTAAACA 59.748 43.478 0.00 0.00 36.85 2.83
597 1376 3.500680 TCCGGCTCATCTTTGTGTTAAAC 59.499 43.478 0.00 0.00 0.00 2.01
598 1377 3.745799 TCCGGCTCATCTTTGTGTTAAA 58.254 40.909 0.00 0.00 0.00 1.52
599 1378 3.410631 TCCGGCTCATCTTTGTGTTAA 57.589 42.857 0.00 0.00 0.00 2.01
600 1379 3.071479 GTTCCGGCTCATCTTTGTGTTA 58.929 45.455 0.00 0.00 0.00 2.41
601 1380 1.880027 GTTCCGGCTCATCTTTGTGTT 59.120 47.619 0.00 0.00 0.00 3.32
602 1381 1.523758 GTTCCGGCTCATCTTTGTGT 58.476 50.000 0.00 0.00 0.00 3.72
603 1382 0.443869 CGTTCCGGCTCATCTTTGTG 59.556 55.000 0.00 0.00 0.00 3.33
604 1383 0.034896 ACGTTCCGGCTCATCTTTGT 59.965 50.000 0.00 0.00 0.00 2.83
605 1384 1.156736 AACGTTCCGGCTCATCTTTG 58.843 50.000 0.00 0.00 0.00 2.77
606 1385 2.618053 CTAACGTTCCGGCTCATCTTT 58.382 47.619 2.82 0.00 0.00 2.52
607 1386 1.739371 GCTAACGTTCCGGCTCATCTT 60.739 52.381 2.82 0.00 0.00 2.40
608 1387 0.179108 GCTAACGTTCCGGCTCATCT 60.179 55.000 2.82 0.00 0.00 2.90
609 1388 0.179108 AGCTAACGTTCCGGCTCATC 60.179 55.000 2.82 0.00 0.00 2.92
610 1389 0.460284 CAGCTAACGTTCCGGCTCAT 60.460 55.000 16.68 0.00 32.30 2.90
611 1390 1.080093 CAGCTAACGTTCCGGCTCA 60.080 57.895 16.68 0.00 32.30 4.26
612 1391 0.389426 TTCAGCTAACGTTCCGGCTC 60.389 55.000 16.68 0.00 32.30 4.70
613 1392 0.249398 ATTCAGCTAACGTTCCGGCT 59.751 50.000 2.82 10.74 35.23 5.52
614 1393 0.373716 CATTCAGCTAACGTTCCGGC 59.626 55.000 2.82 8.41 0.00 6.13
615 1394 2.004583 TCATTCAGCTAACGTTCCGG 57.995 50.000 2.82 0.00 0.00 5.14
616 1395 4.600012 AAATCATTCAGCTAACGTTCCG 57.400 40.909 2.82 0.00 0.00 4.30
617 1396 8.988934 TCATATAAATCATTCAGCTAACGTTCC 58.011 33.333 2.82 0.00 0.00 3.62
620 1399 9.547753 ACTTCATATAAATCATTCAGCTAACGT 57.452 29.630 0.00 0.00 0.00 3.99
668 1447 9.092876 CTTACTTGAAATTGGAGAGCTAGTTAG 57.907 37.037 0.00 0.00 0.00 2.34
669 1448 8.812972 TCTTACTTGAAATTGGAGAGCTAGTTA 58.187 33.333 0.00 0.00 0.00 2.24
670 1449 7.680730 TCTTACTTGAAATTGGAGAGCTAGTT 58.319 34.615 0.00 0.00 0.00 2.24
671 1450 7.246171 TCTTACTTGAAATTGGAGAGCTAGT 57.754 36.000 0.00 0.00 0.00 2.57
672 1451 9.474920 CTATCTTACTTGAAATTGGAGAGCTAG 57.525 37.037 0.00 0.00 0.00 3.42
673 1452 8.424918 CCTATCTTACTTGAAATTGGAGAGCTA 58.575 37.037 0.00 0.00 0.00 3.32
674 1453 7.126421 TCCTATCTTACTTGAAATTGGAGAGCT 59.874 37.037 0.00 0.00 0.00 4.09
675 1454 7.275920 TCCTATCTTACTTGAAATTGGAGAGC 58.724 38.462 0.00 0.00 0.00 4.09
676 1455 7.440856 GCTCCTATCTTACTTGAAATTGGAGAG 59.559 40.741 13.45 0.00 39.54 3.20
677 1456 7.275920 GCTCCTATCTTACTTGAAATTGGAGA 58.724 38.462 13.45 0.00 39.54 3.71
678 1457 6.484977 GGCTCCTATCTTACTTGAAATTGGAG 59.515 42.308 0.00 0.00 39.99 3.86
679 1458 6.069673 TGGCTCCTATCTTACTTGAAATTGGA 60.070 38.462 0.00 0.00 0.00 3.53
680 1459 6.122277 TGGCTCCTATCTTACTTGAAATTGG 58.878 40.000 0.00 0.00 0.00 3.16
681 1460 7.814264 ATGGCTCCTATCTTACTTGAAATTG 57.186 36.000 0.00 0.00 0.00 2.32
684 1463 9.342308 CAATTATGGCTCCTATCTTACTTGAAA 57.658 33.333 0.00 0.00 0.00 2.69
685 1464 8.713971 TCAATTATGGCTCCTATCTTACTTGAA 58.286 33.333 0.00 0.00 0.00 2.69
686 1465 8.262601 TCAATTATGGCTCCTATCTTACTTGA 57.737 34.615 0.00 0.00 0.00 3.02
687 1466 8.778358 GTTCAATTATGGCTCCTATCTTACTTG 58.222 37.037 0.00 0.00 0.00 3.16
688 1467 7.657761 CGTTCAATTATGGCTCCTATCTTACTT 59.342 37.037 0.00 0.00 0.00 2.24
689 1468 7.015292 TCGTTCAATTATGGCTCCTATCTTACT 59.985 37.037 0.00 0.00 0.00 2.24
690 1469 7.152645 TCGTTCAATTATGGCTCCTATCTTAC 58.847 38.462 0.00 0.00 0.00 2.34
691 1470 7.232737 TCTCGTTCAATTATGGCTCCTATCTTA 59.767 37.037 0.00 0.00 0.00 2.10
692 1471 6.042093 TCTCGTTCAATTATGGCTCCTATCTT 59.958 38.462 0.00 0.00 0.00 2.40
693 1472 5.540337 TCTCGTTCAATTATGGCTCCTATCT 59.460 40.000 0.00 0.00 0.00 1.98
694 1473 5.784177 TCTCGTTCAATTATGGCTCCTATC 58.216 41.667 0.00 0.00 0.00 2.08
695 1474 5.808366 TCTCGTTCAATTATGGCTCCTAT 57.192 39.130 0.00 0.00 0.00 2.57
696 1475 5.607939 TTCTCGTTCAATTATGGCTCCTA 57.392 39.130 0.00 0.00 0.00 2.94
697 1476 4.487714 TTCTCGTTCAATTATGGCTCCT 57.512 40.909 0.00 0.00 0.00 3.69
698 1477 5.066505 ACAATTCTCGTTCAATTATGGCTCC 59.933 40.000 0.00 0.00 0.00 4.70
699 1478 5.967674 CACAATTCTCGTTCAATTATGGCTC 59.032 40.000 0.00 0.00 0.00 4.70
700 1479 5.163622 CCACAATTCTCGTTCAATTATGGCT 60.164 40.000 2.38 0.00 32.44 4.75
701 1480 5.036737 CCACAATTCTCGTTCAATTATGGC 58.963 41.667 2.38 0.00 32.44 4.40
702 1481 5.036737 GCCACAATTCTCGTTCAATTATGG 58.963 41.667 8.51 8.51 39.76 2.74
703 1482 4.730042 CGCCACAATTCTCGTTCAATTATG 59.270 41.667 0.00 0.00 0.00 1.90
704 1483 4.634004 TCGCCACAATTCTCGTTCAATTAT 59.366 37.500 0.00 0.00 0.00 1.28
705 1484 3.997681 TCGCCACAATTCTCGTTCAATTA 59.002 39.130 0.00 0.00 0.00 1.40
706 1485 2.811431 TCGCCACAATTCTCGTTCAATT 59.189 40.909 0.00 0.00 0.00 2.32
707 1486 2.416547 CTCGCCACAATTCTCGTTCAAT 59.583 45.455 0.00 0.00 0.00 2.57
708 1487 1.798223 CTCGCCACAATTCTCGTTCAA 59.202 47.619 0.00 0.00 0.00 2.69
709 1488 1.270094 ACTCGCCACAATTCTCGTTCA 60.270 47.619 0.00 0.00 0.00 3.18
710 1489 1.429463 ACTCGCCACAATTCTCGTTC 58.571 50.000 0.00 0.00 0.00 3.95
711 1490 2.736144 TACTCGCCACAATTCTCGTT 57.264 45.000 0.00 0.00 0.00 3.85
712 1491 2.961526 ATACTCGCCACAATTCTCGT 57.038 45.000 0.00 0.00 0.00 4.18
713 1492 3.242413 CCAAATACTCGCCACAATTCTCG 60.242 47.826 0.00 0.00 0.00 4.04
714 1493 3.938963 TCCAAATACTCGCCACAATTCTC 59.061 43.478 0.00 0.00 0.00 2.87
715 1494 3.941483 CTCCAAATACTCGCCACAATTCT 59.059 43.478 0.00 0.00 0.00 2.40
716 1495 3.065371 CCTCCAAATACTCGCCACAATTC 59.935 47.826 0.00 0.00 0.00 2.17
717 1496 3.016736 CCTCCAAATACTCGCCACAATT 58.983 45.455 0.00 0.00 0.00 2.32
718 1497 2.238646 TCCTCCAAATACTCGCCACAAT 59.761 45.455 0.00 0.00 0.00 2.71
719 1498 1.626321 TCCTCCAAATACTCGCCACAA 59.374 47.619 0.00 0.00 0.00 3.33
720 1499 1.271856 TCCTCCAAATACTCGCCACA 58.728 50.000 0.00 0.00 0.00 4.17
721 1500 2.007608 GTTCCTCCAAATACTCGCCAC 58.992 52.381 0.00 0.00 0.00 5.01
722 1501 1.404986 CGTTCCTCCAAATACTCGCCA 60.405 52.381 0.00 0.00 0.00 5.69
723 1502 1.287425 CGTTCCTCCAAATACTCGCC 58.713 55.000 0.00 0.00 0.00 5.54
724 1503 2.005971 ACGTTCCTCCAAATACTCGC 57.994 50.000 0.00 0.00 0.00 5.03
725 1504 3.323243 ACAACGTTCCTCCAAATACTCG 58.677 45.455 0.00 0.00 0.00 4.18
726 1505 9.189723 GTATATACAACGTTCCTCCAAATACTC 57.810 37.037 8.05 0.00 0.00 2.59
727 1506 8.921205 AGTATATACAACGTTCCTCCAAATACT 58.079 33.333 15.18 3.45 0.00 2.12
728 1507 9.189723 GAGTATATACAACGTTCCTCCAAATAC 57.810 37.037 15.18 1.21 0.00 1.89
729 1508 8.362639 GGAGTATATACAACGTTCCTCCAAATA 58.637 37.037 15.18 0.00 37.71 1.40
730 1509 7.070821 AGGAGTATATACAACGTTCCTCCAAAT 59.929 37.037 15.18 0.00 39.73 2.32
731 1510 6.381994 AGGAGTATATACAACGTTCCTCCAAA 59.618 38.462 15.18 0.00 39.73 3.28
732 1511 5.895534 AGGAGTATATACAACGTTCCTCCAA 59.104 40.000 15.18 0.00 39.73 3.53
784 1568 2.480419 GCTGCAACACGTGTCTCTATTT 59.520 45.455 23.61 0.38 0.00 1.40
785 1569 2.069273 GCTGCAACACGTGTCTCTATT 58.931 47.619 23.61 1.26 0.00 1.73
786 1570 1.273606 AGCTGCAACACGTGTCTCTAT 59.726 47.619 23.61 2.14 0.00 1.98
855 1639 2.758327 ATGCTAGGCGACACCCGA 60.758 61.111 0.00 0.00 41.76 5.14
923 1708 4.884668 AATTAGTTGGACAGAACGAGGA 57.115 40.909 0.00 0.00 0.00 3.71
946 1731 2.774951 CGAACAGGAACGCGCGTAG 61.775 63.158 37.93 26.47 0.00 3.51
957 1742 1.080298 GGTACGTGGGTCGAACAGG 60.080 63.158 1.31 6.16 42.86 4.00
1254 2042 4.765970 TGATGCTGCCCCTCCCCT 62.766 66.667 0.00 0.00 0.00 4.79
1269 2069 1.025113 GCATCTGCTTCTGCTGCTGA 61.025 55.000 5.03 5.03 41.29 4.26
1270 2070 1.305930 TGCATCTGCTTCTGCTGCTG 61.306 55.000 0.00 0.00 42.66 4.41
1271 2071 1.002502 TGCATCTGCTTCTGCTGCT 60.003 52.632 0.00 0.00 42.66 4.24
1272 2072 1.025113 TCTGCATCTGCTTCTGCTGC 61.025 55.000 3.53 0.00 42.66 5.25
1273 2073 1.398739 CTTCTGCATCTGCTTCTGCTG 59.601 52.381 3.53 6.15 42.66 4.41
1274 2074 1.740297 CTTCTGCATCTGCTTCTGCT 58.260 50.000 3.53 0.00 42.66 4.24
1275 2075 0.099082 GCTTCTGCATCTGCTTCTGC 59.901 55.000 3.53 0.23 42.66 4.26
1276 2076 1.450025 TGCTTCTGCATCTGCTTCTG 58.550 50.000 3.53 0.00 45.31 3.02
1277 2077 3.950869 TGCTTCTGCATCTGCTTCT 57.049 47.368 3.53 0.00 45.31 2.85
1302 2102 4.699522 GCCCTCTTGGTCGGCGTT 62.700 66.667 6.85 0.00 36.04 4.84
1458 2261 2.510664 GAGGTCCTCGAAGCTCCAT 58.489 57.895 2.28 0.00 37.73 3.41
1517 2320 7.745717 TCCAGACGGATCCAAGATTATTTATT 58.254 34.615 13.41 0.00 35.91 1.40
1712 2515 0.969409 AGCCACTACCCCACGTAGAC 60.969 60.000 4.00 0.00 46.53 2.59
1716 2519 3.379445 CGAGCCACTACCCCACGT 61.379 66.667 0.00 0.00 0.00 4.49
1780 2585 6.772360 AATGTTCATATGTACATTGCACCA 57.228 33.333 29.19 6.66 42.03 4.17
1819 2624 5.574891 TGGGTATGAAAAATGGACGATTG 57.425 39.130 0.00 0.00 0.00 2.67
1831 2636 4.038642 GTCCAAAGCAAGTTGGGTATGAAA 59.961 41.667 4.75 0.00 46.89 2.69
1850 2655 0.535335 GTAGATTCGCCACTGGTCCA 59.465 55.000 0.00 0.00 0.00 4.02
1894 2699 2.409975 CCTAGTTTTCTCGCCGTTCAA 58.590 47.619 0.00 0.00 0.00 2.69
2135 2999 7.349859 TGAACCTATCCCAACTAATATGAACCT 59.650 37.037 0.00 0.00 0.00 3.50
2425 3361 4.221703 ACAACAACAACAATCTTTGGTCCA 59.778 37.500 0.00 0.00 34.12 4.02
2432 3368 5.788450 TCCAACAACAACAACAACAATCTT 58.212 33.333 0.00 0.00 0.00 2.40
2433 3369 5.398603 TCCAACAACAACAACAACAATCT 57.601 34.783 0.00 0.00 0.00 2.40
2434 3370 6.238076 GGATTCCAACAACAACAACAACAATC 60.238 38.462 0.00 0.00 0.00 2.67
2435 3371 5.584251 GGATTCCAACAACAACAACAACAAT 59.416 36.000 0.00 0.00 0.00 2.71
2436 3372 4.932200 GGATTCCAACAACAACAACAACAA 59.068 37.500 0.00 0.00 0.00 2.83
2437 3373 4.499183 GGATTCCAACAACAACAACAACA 58.501 39.130 0.00 0.00 0.00 3.33
2438 3374 3.868661 GGGATTCCAACAACAACAACAAC 59.131 43.478 4.80 0.00 0.00 3.32
2439 3375 3.515502 TGGGATTCCAACAACAACAACAA 59.484 39.130 4.80 0.00 40.73 2.83
2440 3376 3.099905 TGGGATTCCAACAACAACAACA 58.900 40.909 4.80 0.00 40.73 3.33
2441 3377 3.810310 TGGGATTCCAACAACAACAAC 57.190 42.857 4.80 0.00 40.73 3.32
2452 3388 6.991531 CAGATTTTTCTTGTTTTGGGATTCCA 59.008 34.615 4.80 0.00 42.25 3.53
2453 3389 6.992123 ACAGATTTTTCTTGTTTTGGGATTCC 59.008 34.615 0.00 0.00 0.00 3.01
2454 3390 9.196552 CTACAGATTTTTCTTGTTTTGGGATTC 57.803 33.333 0.00 0.00 0.00 2.52
2455 3391 8.923270 TCTACAGATTTTTCTTGTTTTGGGATT 58.077 29.630 0.00 0.00 0.00 3.01
2456 3392 8.360390 GTCTACAGATTTTTCTTGTTTTGGGAT 58.640 33.333 0.00 0.00 0.00 3.85
2457 3393 7.340743 TGTCTACAGATTTTTCTTGTTTTGGGA 59.659 33.333 0.00 0.00 0.00 4.37
2458 3394 7.488322 TGTCTACAGATTTTTCTTGTTTTGGG 58.512 34.615 0.00 0.00 0.00 4.12
2459 3395 8.566008 CTGTCTACAGATTTTTCTTGTTTTGG 57.434 34.615 3.99 0.00 46.59 3.28
2475 3411 2.420687 GGCCCAAAGGATCTGTCTACAG 60.421 54.545 3.64 3.64 39.51 2.74
2476 3412 1.559682 GGCCCAAAGGATCTGTCTACA 59.440 52.381 0.00 0.00 33.47 2.74
2477 3413 1.840635 AGGCCCAAAGGATCTGTCTAC 59.159 52.381 0.00 0.00 33.47 2.59
2478 3414 2.270434 AGGCCCAAAGGATCTGTCTA 57.730 50.000 0.00 0.00 33.47 2.59
2479 3415 1.376649 AAGGCCCAAAGGATCTGTCT 58.623 50.000 0.00 0.00 33.47 3.41
2480 3416 2.095461 GAAAGGCCCAAAGGATCTGTC 58.905 52.381 0.00 0.00 33.47 3.51
2481 3417 2.222227 GAAAGGCCCAAAGGATCTGT 57.778 50.000 0.00 0.00 33.47 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.