Multiple sequence alignment - TraesCS1B01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G053500 chr1B 100.000 3329 0 0 1 3329 33980222 33983550 0.000000e+00 6148
1 TraesCS1B01G053500 chr1D 88.251 1515 85 39 11 1496 20054051 20052601 0.000000e+00 1725
2 TraesCS1B01G053500 chr1D 88.730 488 43 8 2261 2747 20051466 20050990 1.330000e-163 586
3 TraesCS1B01G053500 chr1D 91.282 195 10 4 3117 3307 20050889 20050698 3.290000e-65 259
4 TraesCS1B01G053500 chr1D 77.574 437 63 18 1821 2246 20051954 20051542 7.180000e-57 231
5 TraesCS1B01G053500 chr1A 84.759 1496 106 59 17 1480 22290867 22292272 0.000000e+00 1387
6 TraesCS1B01G053500 chr1A 86.272 692 54 21 2258 2927 22293334 22294006 0.000000e+00 713
7 TraesCS1B01G053500 chr1A 91.133 203 11 5 3117 3315 22294197 22294396 5.470000e-68 268
8 TraesCS1B01G053500 chr1A 92.391 92 3 2 2993 3080 22294030 22294121 9.690000e-26 128
9 TraesCS1B01G053500 chr5D 86.041 437 31 15 1085 1494 189929916 189930349 3.050000e-120 442


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G053500 chr1B 33980222 33983550 3328 False 6148.00 6148 100.00000 1 3329 1 chr1B.!!$F1 3328
1 TraesCS1B01G053500 chr1D 20050698 20054051 3353 True 700.25 1725 86.45925 11 3307 4 chr1D.!!$R1 3296
2 TraesCS1B01G053500 chr1A 22290867 22294396 3529 False 624.00 1387 88.63875 17 3315 4 chr1A.!!$F1 3298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.179158 GCTCTCCGTCGGACTTCTTC 60.179 60.0 10.71 0.0 0.0 2.87 F
515 519 1.107945 CTCCTCCGACTTCTTCTCCC 58.892 60.0 0.00 0.0 0.0 4.30 F
1333 1359 0.031043 CATCTGCTCTGCTCTCCTCG 59.969 60.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 1352 0.179018 TCAGGCATCGATCGAGGAGA 60.179 55.0 31.78 21.5 0.00 3.71 R
1778 2373 0.250510 GGCCTTATACTGCAGCCTCC 60.251 60.0 15.27 1.8 40.57 4.30 R
3075 3786 0.110056 GCTCGCAACTTGATGTGTGG 60.110 55.0 0.00 0.0 32.67 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.591059 CTGCTTCTCCGCCTCATCG 60.591 63.158 0.00 0.00 0.00 3.84
94 95 1.298713 CTTCTCCGCCTCATCGTCG 60.299 63.158 0.00 0.00 0.00 5.12
129 130 3.933722 CGCCTCCGCCTCCATCAT 61.934 66.667 0.00 0.00 0.00 2.45
235 236 2.447572 TCCACCACCACCAGCTCA 60.448 61.111 0.00 0.00 0.00 4.26
273 274 4.821589 CGCTTCCGGGTCCAGCTC 62.822 72.222 0.00 0.00 0.00 4.09
274 275 3.394836 GCTTCCGGGTCCAGCTCT 61.395 66.667 0.00 0.00 0.00 4.09
298 299 0.179158 GCTCTCCGTCGGACTTCTTC 60.179 60.000 10.71 0.00 0.00 2.87
419 420 4.069232 CCAGCTCCGCCTTCGACA 62.069 66.667 0.00 0.00 38.10 4.35
504 508 4.465446 CTCCAGGCCCTCCTCCGA 62.465 72.222 0.00 0.00 41.93 4.55
510 514 1.990614 GGCCCTCCTCCGACTTCTT 60.991 63.158 0.00 0.00 0.00 2.52
515 519 1.107945 CTCCTCCGACTTCTTCTCCC 58.892 60.000 0.00 0.00 0.00 4.30
580 584 2.504367 GCCTTCTTGTTCTTGGCACTA 58.496 47.619 0.00 0.00 42.79 2.74
664 668 2.432510 CACCTTTATCTTCCTCGCCTCT 59.567 50.000 0.00 0.00 0.00 3.69
775 779 4.753877 GCGGCGGCGAGGTTTTTC 62.754 66.667 36.87 10.85 0.00 2.29
835 844 2.856557 GACGAGACGGCAAGGTTTATAC 59.143 50.000 0.00 0.00 33.63 1.47
851 860 1.481056 ATACTGGGCCGGGCTGATAC 61.481 60.000 28.80 11.31 0.00 2.24
869 882 3.202706 GGGCCTTCCATCGAACGC 61.203 66.667 0.84 0.00 35.00 4.84
939 952 5.044772 TCTCTTCTCTTCTCTTACCCTAGCA 60.045 44.000 0.00 0.00 0.00 3.49
940 953 5.197451 TCTTCTCTTCTCTTACCCTAGCAG 58.803 45.833 0.00 0.00 0.00 4.24
941 954 3.292460 TCTCTTCTCTTACCCTAGCAGC 58.708 50.000 0.00 0.00 0.00 5.25
942 955 3.053245 TCTCTTCTCTTACCCTAGCAGCT 60.053 47.826 0.00 0.00 0.00 4.24
943 956 3.704061 CTCTTCTCTTACCCTAGCAGCTT 59.296 47.826 0.00 0.00 0.00 3.74
944 957 4.868268 TCTTCTCTTACCCTAGCAGCTTA 58.132 43.478 0.00 0.00 0.00 3.09
945 958 4.890581 TCTTCTCTTACCCTAGCAGCTTAG 59.109 45.833 0.00 0.00 0.00 2.18
946 959 3.567397 TCTCTTACCCTAGCAGCTTAGG 58.433 50.000 0.00 4.31 39.99 2.69
991 1004 3.353770 GAGCAGAGCAGCAGAGCGA 62.354 63.158 0.00 0.00 40.15 4.93
992 1005 2.202905 GCAGAGCAGCAGAGCGAT 60.203 61.111 0.00 0.00 40.15 4.58
993 1006 2.239124 GCAGAGCAGCAGAGCGATC 61.239 63.158 0.00 0.00 40.15 3.69
994 1007 1.141234 CAGAGCAGCAGAGCGATCA 59.859 57.895 2.38 0.00 40.15 2.92
997 1010 2.014064 GAGCAGCAGAGCGATCAGGA 62.014 60.000 2.38 0.00 40.15 3.86
998 1011 1.592131 GCAGCAGAGCGATCAGGAG 60.592 63.158 2.38 0.00 0.00 3.69
1292 1305 2.483889 CCGAGAAGTAATGAGAAGCCCC 60.484 54.545 0.00 0.00 0.00 5.80
1326 1352 4.172512 CCCGCCATCTGCTCTGCT 62.173 66.667 0.00 0.00 38.05 4.24
1328 1354 2.500165 CGCCATCTGCTCTGCTCT 59.500 61.111 0.00 0.00 38.05 4.09
1329 1355 1.592131 CGCCATCTGCTCTGCTCTC 60.592 63.158 0.00 0.00 38.05 3.20
1330 1356 1.227615 GCCATCTGCTCTGCTCTCC 60.228 63.158 0.00 0.00 36.87 3.71
1332 1358 0.390124 CCATCTGCTCTGCTCTCCTC 59.610 60.000 0.00 0.00 0.00 3.71
1333 1359 0.031043 CATCTGCTCTGCTCTCCTCG 59.969 60.000 0.00 0.00 0.00 4.63
1334 1360 0.106769 ATCTGCTCTGCTCTCCTCGA 60.107 55.000 0.00 0.00 0.00 4.04
1345 1375 0.179018 TCTCCTCGATCGATGCCTGA 60.179 55.000 19.78 11.44 0.00 3.86
1346 1376 0.039617 CTCCTCGATCGATGCCTGAC 60.040 60.000 19.78 0.00 0.00 3.51
1444 1499 0.179070 GGTTCGCCTCATCCTTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
1454 1509 2.026822 TCATCCTTCCTCTTGTGCTTCC 60.027 50.000 0.00 0.00 0.00 3.46
1457 1512 1.163554 CTTCCTCTTGTGCTTCCTGC 58.836 55.000 0.00 0.00 43.25 4.85
1461 1516 1.602311 CTCTTGTGCTTCCTGCTGTT 58.398 50.000 0.00 0.00 43.37 3.16
1462 1517 1.534595 CTCTTGTGCTTCCTGCTGTTC 59.465 52.381 0.00 0.00 43.37 3.18
1482 1539 1.518774 CATTTGCCATCCAGTGCCC 59.481 57.895 0.00 0.00 0.00 5.36
1483 1540 1.686800 ATTTGCCATCCAGTGCCCC 60.687 57.895 0.00 0.00 0.00 5.80
1484 1541 2.458969 ATTTGCCATCCAGTGCCCCA 62.459 55.000 0.00 0.00 0.00 4.96
1496 1553 2.201708 TGCCCCACACATTGCAGTG 61.202 57.895 7.79 7.79 44.93 3.66
1508 1565 5.319139 CACATTGCAGTGTTCTTCTAATCG 58.681 41.667 12.76 0.00 34.83 3.34
1510 1567 5.120830 ACATTGCAGTGTTCTTCTAATCGTC 59.879 40.000 9.35 0.00 0.00 4.20
1512 1569 3.057806 TGCAGTGTTCTTCTAATCGTCGA 60.058 43.478 0.00 0.00 0.00 4.20
1513 1570 3.918591 GCAGTGTTCTTCTAATCGTCGAA 59.081 43.478 0.00 0.00 0.00 3.71
1540 1690 1.888512 AGCTTGGGTGTGCTGTTTATG 59.111 47.619 0.00 0.00 38.21 1.90
1545 1695 0.447801 GGTGTGCTGTTTATGGCTCG 59.552 55.000 0.00 0.00 0.00 5.03
1547 1697 0.323302 TGTGCTGTTTATGGCTCGGA 59.677 50.000 0.00 0.00 0.00 4.55
1550 1700 1.828595 TGCTGTTTATGGCTCGGAGTA 59.171 47.619 6.90 0.00 0.00 2.59
1551 1701 2.159099 TGCTGTTTATGGCTCGGAGTAG 60.159 50.000 6.90 0.00 0.00 2.57
1552 1702 2.803492 GCTGTTTATGGCTCGGAGTAGG 60.803 54.545 6.90 0.00 0.00 3.18
1561 1711 3.074094 TGGCTCGGAGTAGGTCTGTATAT 59.926 47.826 6.90 0.00 32.66 0.86
1562 1712 3.690628 GGCTCGGAGTAGGTCTGTATATC 59.309 52.174 6.90 0.00 32.66 1.63
1575 2004 6.812160 AGGTCTGTATATCGAAAATTATCGGC 59.188 38.462 0.00 0.00 42.92 5.54
1581 2010 8.336806 TGTATATCGAAAATTATCGGCGTTTTT 58.663 29.630 6.85 9.27 42.92 1.94
1589 2018 8.522178 AAAATTATCGGCGTTTTTGTTATCAA 57.478 26.923 6.85 0.00 0.00 2.57
1599 2028 7.062839 GGCGTTTTTGTTATCAATGCTTAATCA 59.937 33.333 0.00 0.00 33.32 2.57
1600 2029 7.892731 GCGTTTTTGTTATCAATGCTTAATCAC 59.107 33.333 0.00 0.00 33.32 3.06
1601 2030 8.372521 CGTTTTTGTTATCAATGCTTAATCACC 58.627 33.333 0.00 0.00 33.32 4.02
1603 2032 9.638239 TTTTTGTTATCAATGCTTAATCACCTC 57.362 29.630 0.00 0.00 33.32 3.85
1618 2047 3.581101 TCACCTCTAAGCAGAGCCATAT 58.419 45.455 0.00 0.00 46.08 1.78
1630 2059 3.324268 CAGAGCCATATCTGGAGTCATGT 59.676 47.826 0.32 0.00 46.37 3.21
1644 2073 3.052082 ATGTGCACTGCAGCGGAC 61.052 61.111 18.34 18.34 40.08 4.79
1646 2075 4.996434 GTGCACTGCAGCGGACCT 62.996 66.667 15.27 0.00 40.08 3.85
1647 2076 4.254709 TGCACTGCAGCGGACCTT 62.255 61.111 15.27 0.00 37.31 3.50
1649 2078 2.743928 CACTGCAGCGGACCTTCC 60.744 66.667 15.27 0.00 0.00 3.46
1654 2083 2.032528 CAGCGGACCTTCCTTGCA 59.967 61.111 0.00 0.00 33.30 4.08
1660 2089 2.487934 CGGACCTTCCTTGCATAGATG 58.512 52.381 0.00 0.00 33.30 2.90
1663 2092 3.135530 GGACCTTCCTTGCATAGATGAGT 59.864 47.826 0.00 0.00 32.53 3.41
1676 2253 5.982516 GCATAGATGAGTGACAAGAGGTTAG 59.017 44.000 0.00 0.00 0.00 2.34
1678 2255 3.196685 AGATGAGTGACAAGAGGTTAGGC 59.803 47.826 0.00 0.00 0.00 3.93
1699 2276 3.727726 CACAAGGGATTTCAAACCAACC 58.272 45.455 0.00 0.00 0.00 3.77
1704 2281 2.547855 GGGATTTCAAACCAACCAGTGC 60.548 50.000 0.00 0.00 0.00 4.40
1705 2282 2.102252 GGATTTCAAACCAACCAGTGCA 59.898 45.455 0.00 0.00 0.00 4.57
1711 2288 4.148079 TCAAACCAACCAGTGCAATGATA 58.852 39.130 17.16 0.00 0.00 2.15
1712 2289 4.771577 TCAAACCAACCAGTGCAATGATAT 59.228 37.500 17.16 0.00 0.00 1.63
1713 2290 5.948758 TCAAACCAACCAGTGCAATGATATA 59.051 36.000 17.16 0.00 0.00 0.86
1714 2291 6.095300 TCAAACCAACCAGTGCAATGATATAG 59.905 38.462 17.16 0.22 0.00 1.31
1716 2293 6.247229 ACCAACCAGTGCAATGATATAGTA 57.753 37.500 17.16 0.00 0.00 1.82
1720 2297 8.314021 CCAACCAGTGCAATGATATAGTATCTA 58.686 37.037 17.16 0.00 0.00 1.98
1723 2300 7.895962 ACCAGTGCAATGATATAGTATCTAGGA 59.104 37.037 17.16 0.00 0.00 2.94
1726 2303 8.754080 AGTGCAATGATATAGTATCTAGGAACC 58.246 37.037 0.00 0.00 0.00 3.62
1737 2314 6.308566 AGTATCTAGGAACCTACTCATGGAC 58.691 44.000 0.00 0.00 0.00 4.02
1738 2315 4.603094 TCTAGGAACCTACTCATGGACA 57.397 45.455 0.00 0.00 0.00 4.02
1739 2316 4.942944 TCTAGGAACCTACTCATGGACAA 58.057 43.478 0.00 0.00 0.00 3.18
1743 2320 5.529289 AGGAACCTACTCATGGACAATCTA 58.471 41.667 0.00 0.00 0.00 1.98
1744 2321 5.964477 AGGAACCTACTCATGGACAATCTAA 59.036 40.000 0.00 0.00 0.00 2.10
1746 2323 5.283457 ACCTACTCATGGACAATCTAAGC 57.717 43.478 0.00 0.00 0.00 3.09
1747 2324 4.101741 ACCTACTCATGGACAATCTAAGCC 59.898 45.833 0.00 0.00 0.00 4.35
1748 2325 3.567478 ACTCATGGACAATCTAAGCCC 57.433 47.619 0.00 0.00 0.00 5.19
1749 2326 2.173569 ACTCATGGACAATCTAAGCCCC 59.826 50.000 0.00 0.00 0.00 5.80
1750 2327 1.140852 TCATGGACAATCTAAGCCCCG 59.859 52.381 0.00 0.00 0.00 5.73
1751 2328 1.140852 CATGGACAATCTAAGCCCCGA 59.859 52.381 0.00 0.00 0.00 5.14
1753 2330 1.843851 TGGACAATCTAAGCCCCGATT 59.156 47.619 0.00 0.00 0.00 3.34
1755 2332 1.604278 GACAATCTAAGCCCCGATTGC 59.396 52.381 15.35 7.99 46.43 3.56
1756 2333 1.064758 ACAATCTAAGCCCCGATTGCA 60.065 47.619 15.35 0.00 46.43 4.08
1758 2335 2.191128 ATCTAAGCCCCGATTGCATC 57.809 50.000 0.00 0.00 0.00 3.91
1759 2336 0.108585 TCTAAGCCCCGATTGCATCC 59.891 55.000 0.00 0.00 0.00 3.51
1766 2361 1.404717 CCCCGATTGCATCCTATCTCG 60.405 57.143 0.00 0.00 0.00 4.04
1771 2366 2.936919 TTGCATCCTATCTCGGCATT 57.063 45.000 0.00 0.00 34.03 3.56
1778 2373 5.515184 CATCCTATCTCGGCATTAGATACG 58.485 45.833 0.00 0.00 35.36 3.06
1779 2374 3.945921 TCCTATCTCGGCATTAGATACGG 59.054 47.826 0.00 0.00 35.36 4.02
1789 2384 1.776662 TTAGATACGGAGGCTGCAGT 58.223 50.000 16.64 7.72 0.00 4.40
1790 2385 2.651382 TAGATACGGAGGCTGCAGTA 57.349 50.000 16.64 9.71 0.00 2.74
1791 2386 2.002505 AGATACGGAGGCTGCAGTAT 57.997 50.000 16.64 17.93 32.97 2.12
1792 2387 3.156288 AGATACGGAGGCTGCAGTATA 57.844 47.619 16.64 0.00 30.95 1.47
1794 2389 3.508012 AGATACGGAGGCTGCAGTATAAG 59.492 47.826 16.64 7.30 30.95 1.73
1795 2390 0.753262 ACGGAGGCTGCAGTATAAGG 59.247 55.000 16.64 3.53 0.00 2.69
1796 2391 0.601311 CGGAGGCTGCAGTATAAGGC 60.601 60.000 16.64 0.53 39.18 4.35
1797 2392 0.250510 GGAGGCTGCAGTATAAGGCC 60.251 60.000 16.64 9.32 42.74 5.19
1799 2394 3.314083 GGCTGCAGTATAAGGCCTC 57.686 57.895 16.64 0.00 39.68 4.70
1800 2395 0.761802 GGCTGCAGTATAAGGCCTCT 59.238 55.000 16.64 0.00 39.68 3.69
1801 2396 1.141858 GGCTGCAGTATAAGGCCTCTT 59.858 52.381 16.64 0.00 39.68 2.85
1802 2397 2.216898 GCTGCAGTATAAGGCCTCTTG 58.783 52.381 16.64 1.35 34.59 3.02
1803 2398 2.843701 CTGCAGTATAAGGCCTCTTGG 58.156 52.381 5.23 0.00 34.59 3.61
1804 2399 1.490490 TGCAGTATAAGGCCTCTTGGG 59.510 52.381 5.23 0.00 34.59 4.12
1805 2400 1.490910 GCAGTATAAGGCCTCTTGGGT 59.509 52.381 5.23 0.00 37.43 4.51
1806 2401 2.746472 GCAGTATAAGGCCTCTTGGGTG 60.746 54.545 5.23 0.65 37.43 4.61
1807 2402 1.490910 AGTATAAGGCCTCTTGGGTGC 59.509 52.381 5.23 0.00 37.43 5.01
1808 2403 1.211949 GTATAAGGCCTCTTGGGTGCA 59.788 52.381 5.23 0.00 37.43 4.57
1809 2404 0.704076 ATAAGGCCTCTTGGGTGCAA 59.296 50.000 5.23 0.00 37.43 4.08
1810 2405 0.038166 TAAGGCCTCTTGGGTGCAAG 59.962 55.000 5.23 0.00 37.43 4.01
1811 2406 3.376918 GGCCTCTTGGGTGCAAGC 61.377 66.667 0.00 0.00 37.43 4.01
1843 2438 4.782019 TGGCATACCATTCAAAACAGAC 57.218 40.909 0.00 0.00 42.67 3.51
1845 2440 5.565509 TGGCATACCATTCAAAACAGACTA 58.434 37.500 0.00 0.00 42.67 2.59
1864 2459 7.653713 ACAGACTAATTCATCATTACGGACATC 59.346 37.037 0.00 0.00 0.00 3.06
1892 2493 1.072965 AGAGGTTGCTTCCTGGTCTTG 59.927 52.381 5.07 0.00 38.02 3.02
1896 2497 1.604278 GTTGCTTCCTGGTCTTGTGAC 59.396 52.381 0.00 0.00 42.22 3.67
1912 2513 2.974165 GTGACTTCACAAGAGTTTGCG 58.026 47.619 4.43 0.00 45.75 4.85
1915 2516 1.331756 ACTTCACAAGAGTTTGCGCTG 59.668 47.619 9.73 0.00 37.85 5.18
1918 2519 2.135139 TCACAAGAGTTTGCGCTGTAG 58.865 47.619 9.73 0.00 37.85 2.74
1919 2520 1.195448 CACAAGAGTTTGCGCTGTAGG 59.805 52.381 9.73 0.00 37.85 3.18
1931 2532 1.753956 GCTGTAGGTTTTGTGCAACG 58.246 50.000 0.00 0.00 42.39 4.10
1934 2535 3.187637 GCTGTAGGTTTTGTGCAACGATA 59.812 43.478 0.00 0.00 42.39 2.92
1937 2538 3.848272 AGGTTTTGTGCAACGATATGG 57.152 42.857 0.00 0.00 42.39 2.74
1968 2571 5.747951 ATAAGCTTGCTTGTAAGATGAGC 57.252 39.130 17.04 1.79 36.95 4.26
1969 2572 2.005451 AGCTTGCTTGTAAGATGAGCG 58.995 47.619 2.74 0.00 39.23 5.03
2000 2603 1.132500 GGTTAGGCTGCTAGGATGGT 58.868 55.000 0.00 0.00 0.00 3.55
2001 2604 1.202698 GGTTAGGCTGCTAGGATGGTG 60.203 57.143 0.00 0.00 0.00 4.17
2009 2612 0.320247 GCTAGGATGGTGATGGAGCG 60.320 60.000 0.00 0.00 0.00 5.03
2051 2658 9.288576 TGTGCTGATAATTAAATTCCTGGATAG 57.711 33.333 0.00 0.00 0.00 2.08
2061 2668 8.732746 TTAAATTCCTGGATAGTTGCTACTTC 57.267 34.615 6.03 4.31 35.78 3.01
2070 2677 6.152323 TGGATAGTTGCTACTTCTAGTTCGTT 59.848 38.462 6.03 0.00 35.78 3.85
2072 2679 7.220491 GGATAGTTGCTACTTCTAGTTCGTTTC 59.780 40.741 6.03 0.00 35.78 2.78
2073 2680 6.086785 AGTTGCTACTTCTAGTTCGTTTCT 57.913 37.500 0.00 0.00 0.00 2.52
2079 2686 6.807230 GCTACTTCTAGTTCGTTTCTTCATCA 59.193 38.462 0.00 0.00 0.00 3.07
2090 2697 7.864108 TCGTTTCTTCATCAAACATGGATAT 57.136 32.000 0.00 0.00 33.99 1.63
2111 2718 9.046296 GGATATGATAAATTAGTAATGGCTCGG 57.954 37.037 0.00 0.00 0.00 4.63
2116 2723 7.554835 TGATAAATTAGTAATGGCTCGGTTTGT 59.445 33.333 0.00 0.00 0.00 2.83
2119 2726 3.134574 AGTAATGGCTCGGTTTGTGAA 57.865 42.857 0.00 0.00 0.00 3.18
2127 2734 4.165779 GGCTCGGTTTGTGAAAATATGTG 58.834 43.478 0.00 0.00 0.00 3.21
2131 2738 6.200097 GCTCGGTTTGTGAAAATATGTGTTTT 59.800 34.615 0.00 0.00 34.19 2.43
2160 2767 4.082787 TCAAAAGCTATGCTGCCAGTTTAC 60.083 41.667 0.00 0.00 39.62 2.01
2184 2792 3.113260 AGTTCTTACTCAAGCGTTGCT 57.887 42.857 0.00 0.00 42.56 3.91
2202 2810 5.220303 CGTTGCTTAGTCAAGAGTATGCTTC 60.220 44.000 18.03 12.17 37.90 3.86
2214 2822 5.128919 AGAGTATGCTTCAAGGCTAAATGG 58.871 41.667 0.00 0.00 0.00 3.16
2226 2850 4.012374 AGGCTAAATGGTTGTGATCACTG 58.988 43.478 25.55 6.69 0.00 3.66
2243 2867 5.698741 TCACTGTGGTGATGATTAATCCT 57.301 39.130 12.90 2.79 46.19 3.24
2244 2868 5.430886 TCACTGTGGTGATGATTAATCCTG 58.569 41.667 12.90 2.71 46.19 3.86
2245 2869 5.189539 TCACTGTGGTGATGATTAATCCTGA 59.810 40.000 12.90 0.00 46.19 3.86
2259 2933 8.514594 TGATTAATCCTGATTTGTCTGTGTTTC 58.485 33.333 12.90 0.00 32.50 2.78
2286 2972 6.806751 TCTTCAGAAACGTAGATGGGATAAG 58.193 40.000 0.00 0.00 0.00 1.73
2307 2993 1.506025 AGATGAAAGAGGAGGAGGCC 58.494 55.000 0.00 0.00 0.00 5.19
2340 3026 4.632292 AGGCTACTTAATTAGGGGACTGT 58.368 43.478 0.00 0.00 43.88 3.55
2396 3082 9.155975 CAATCGGGAAGGAACTCATAATATAAG 57.844 37.037 0.00 0.00 38.49 1.73
2503 3191 2.928116 GTCGAAGGGTGTGTAATGTAGC 59.072 50.000 0.00 0.00 0.00 3.58
2505 3193 2.930040 CGAAGGGTGTGTAATGTAGCAG 59.070 50.000 0.00 0.00 0.00 4.24
2515 3203 5.057149 GTGTAATGTAGCAGGTTCATAGGG 58.943 45.833 0.00 0.00 0.00 3.53
2517 3205 3.845781 ATGTAGCAGGTTCATAGGGTG 57.154 47.619 0.00 0.00 0.00 4.61
2538 3228 3.131223 TGATTGGTTTGCGGTCTTTTTCA 59.869 39.130 0.00 0.00 0.00 2.69
2540 3230 1.819288 TGGTTTGCGGTCTTTTTCACA 59.181 42.857 0.00 0.00 0.00 3.58
2543 3233 3.868661 GGTTTGCGGTCTTTTTCACATTT 59.131 39.130 0.00 0.00 0.00 2.32
2544 3234 5.044558 GGTTTGCGGTCTTTTTCACATTTA 58.955 37.500 0.00 0.00 0.00 1.40
2545 3235 5.051307 GGTTTGCGGTCTTTTTCACATTTAC 60.051 40.000 0.00 0.00 0.00 2.01
2546 3236 5.508200 TTGCGGTCTTTTTCACATTTACT 57.492 34.783 0.00 0.00 0.00 2.24
2547 3237 4.854399 TGCGGTCTTTTTCACATTTACTG 58.146 39.130 0.00 0.00 0.00 2.74
2548 3238 4.226761 GCGGTCTTTTTCACATTTACTGG 58.773 43.478 0.00 0.00 0.00 4.00
2549 3239 4.261447 GCGGTCTTTTTCACATTTACTGGT 60.261 41.667 0.00 0.00 0.00 4.00
2550 3240 5.735070 GCGGTCTTTTTCACATTTACTGGTT 60.735 40.000 0.00 0.00 0.00 3.67
2590 3280 2.035704 CCTGCCACACTTTGTAATGCAA 59.964 45.455 0.00 0.00 31.41 4.08
2686 3378 9.545105 TTGCTGAAACAAATCAAAATTATGAGT 57.455 25.926 0.00 0.00 31.76 3.41
2710 3402 9.772973 AGTGTGTGTTTGTTAGTTATTCTCATA 57.227 29.630 0.00 0.00 0.00 2.15
2712 3404 9.772973 TGTGTGTTTGTTAGTTATTCTCATAGT 57.227 29.630 0.00 0.00 0.00 2.12
2747 3439 2.024414 GCAGGGTTTCTTTCTGTGTGT 58.976 47.619 0.00 0.00 0.00 3.72
2748 3440 2.427095 GCAGGGTTTCTTTCTGTGTGTT 59.573 45.455 0.00 0.00 0.00 3.32
2749 3441 3.119137 GCAGGGTTTCTTTCTGTGTGTTT 60.119 43.478 0.00 0.00 0.00 2.83
2750 3442 4.097286 GCAGGGTTTCTTTCTGTGTGTTTA 59.903 41.667 0.00 0.00 0.00 2.01
2751 3443 5.733373 GCAGGGTTTCTTTCTGTGTGTTTAG 60.733 44.000 0.00 0.00 0.00 1.85
2752 3444 5.357032 CAGGGTTTCTTTCTGTGTGTTTAGT 59.643 40.000 0.00 0.00 0.00 2.24
2753 3445 5.949952 AGGGTTTCTTTCTGTGTGTTTAGTT 59.050 36.000 0.00 0.00 0.00 2.24
2755 3447 6.349860 GGGTTTCTTTCTGTGTGTTTAGTTGT 60.350 38.462 0.00 0.00 0.00 3.32
2757 3449 5.811399 TCTTTCTGTGTGTTTAGTTGTGG 57.189 39.130 0.00 0.00 0.00 4.17
2760 3452 2.942376 TCTGTGTGTTTAGTTGTGGCAG 59.058 45.455 0.00 0.00 0.00 4.85
2761 3453 2.942376 CTGTGTGTTTAGTTGTGGCAGA 59.058 45.455 0.00 0.00 0.00 4.26
2762 3454 3.348119 TGTGTGTTTAGTTGTGGCAGAA 58.652 40.909 0.00 0.00 0.00 3.02
2765 3457 5.164954 GTGTGTTTAGTTGTGGCAGAAAAA 58.835 37.500 0.00 0.00 0.00 1.94
2766 3458 5.288472 GTGTGTTTAGTTGTGGCAGAAAAAG 59.712 40.000 0.00 0.00 0.00 2.27
2767 3459 4.803613 GTGTTTAGTTGTGGCAGAAAAAGG 59.196 41.667 0.00 0.00 0.00 3.11
2768 3460 4.464597 TGTTTAGTTGTGGCAGAAAAAGGT 59.535 37.500 0.00 0.00 0.00 3.50
2769 3461 4.911514 TTAGTTGTGGCAGAAAAAGGTC 57.088 40.909 0.00 0.00 0.00 3.85
2779 3484 7.121168 TGTGGCAGAAAAAGGTCAGAATAATAG 59.879 37.037 0.00 0.00 0.00 1.73
2790 3495 6.325286 AGGTCAGAATAATAGGAGAACTGGAC 59.675 42.308 0.00 0.00 0.00 4.02
2799 3504 7.676683 AATAGGAGAACTGGACTATAAGCAA 57.323 36.000 0.00 0.00 0.00 3.91
2854 3565 6.211584 GGAGGAAATGTGCCAGTATATCTAGA 59.788 42.308 0.00 0.00 0.00 2.43
2918 3629 9.618890 ACTATTATTGCACACAAGAATATGACT 57.381 29.630 6.38 0.00 44.61 3.41
2921 3632 8.565896 TTATTGCACACAAGAATATGACTTCT 57.434 30.769 0.00 0.00 39.69 2.85
2922 3633 6.882610 TTGCACACAAGAATATGACTTCTT 57.117 33.333 0.00 0.00 44.34 2.52
2938 3649 7.519032 TGACTTCTTGGTTAAGGTAATTTGG 57.481 36.000 0.00 0.00 34.59 3.28
2939 3650 7.064229 TGACTTCTTGGTTAAGGTAATTTGGT 58.936 34.615 0.00 0.00 34.59 3.67
2941 3652 7.064229 ACTTCTTGGTTAAGGTAATTTGGTCA 58.936 34.615 0.00 0.00 34.59 4.02
2942 3653 7.728532 ACTTCTTGGTTAAGGTAATTTGGTCAT 59.271 33.333 0.00 0.00 34.59 3.06
2943 3654 8.485578 TTCTTGGTTAAGGTAATTTGGTCATT 57.514 30.769 0.00 0.00 34.59 2.57
2945 3656 6.597832 TGGTTAAGGTAATTTGGTCATTGG 57.402 37.500 0.00 0.00 0.00 3.16
2946 3657 6.315714 TGGTTAAGGTAATTTGGTCATTGGA 58.684 36.000 0.00 0.00 0.00 3.53
2947 3658 6.209788 TGGTTAAGGTAATTTGGTCATTGGAC 59.790 38.462 0.00 0.00 43.55 4.02
2948 3659 6.319399 GTTAAGGTAATTTGGTCATTGGACG 58.681 40.000 0.00 0.00 45.28 4.79
2949 3660 4.295141 AGGTAATTTGGTCATTGGACGA 57.705 40.909 0.00 0.00 45.28 4.20
2950 3661 4.855340 AGGTAATTTGGTCATTGGACGAT 58.145 39.130 0.00 0.00 45.28 3.73
2951 3662 5.996644 AGGTAATTTGGTCATTGGACGATA 58.003 37.500 0.00 0.00 45.28 2.92
2952 3663 6.601332 AGGTAATTTGGTCATTGGACGATAT 58.399 36.000 0.00 0.00 45.28 1.63
2953 3664 6.710744 AGGTAATTTGGTCATTGGACGATATC 59.289 38.462 0.00 0.00 45.28 1.63
2954 3665 6.485313 GGTAATTTGGTCATTGGACGATATCA 59.515 38.462 3.12 0.00 45.28 2.15
2955 3666 7.012894 GGTAATTTGGTCATTGGACGATATCAA 59.987 37.037 3.12 0.00 45.28 2.57
2956 3667 7.587037 AATTTGGTCATTGGACGATATCAAT 57.413 32.000 3.12 0.00 45.28 2.57
2957 3668 6.618287 TTTGGTCATTGGACGATATCAATC 57.382 37.500 3.12 0.00 45.28 2.67
2958 3669 5.289083 TGGTCATTGGACGATATCAATCA 57.711 39.130 3.12 0.00 45.28 2.57
2959 3670 5.056480 TGGTCATTGGACGATATCAATCAC 58.944 41.667 3.12 0.00 45.28 3.06
2960 3671 5.056480 GGTCATTGGACGATATCAATCACA 58.944 41.667 3.12 0.00 45.28 3.58
2961 3672 5.702670 GGTCATTGGACGATATCAATCACAT 59.297 40.000 3.12 0.00 45.28 3.21
2962 3673 6.205464 GGTCATTGGACGATATCAATCACATT 59.795 38.462 3.12 0.00 45.28 2.71
2963 3674 7.387673 GGTCATTGGACGATATCAATCACATTA 59.612 37.037 3.12 0.00 45.28 1.90
2964 3675 8.939929 GTCATTGGACGATATCAATCACATTAT 58.060 33.333 3.12 0.00 33.68 1.28
2965 3676 9.154847 TCATTGGACGATATCAATCACATTATC 57.845 33.333 3.12 0.00 31.95 1.75
2966 3677 9.159364 CATTGGACGATATCAATCACATTATCT 57.841 33.333 3.12 0.00 31.95 1.98
2967 3678 8.763049 TTGGACGATATCAATCACATTATCTC 57.237 34.615 3.12 0.00 31.93 2.75
2968 3679 7.895759 TGGACGATATCAATCACATTATCTCA 58.104 34.615 3.12 0.00 31.93 3.27
2969 3680 8.367156 TGGACGATATCAATCACATTATCTCAA 58.633 33.333 3.12 0.00 31.93 3.02
2970 3681 9.208022 GGACGATATCAATCACATTATCTCAAA 57.792 33.333 3.12 0.00 31.93 2.69
2972 3683 9.770097 ACGATATCAATCACATTATCTCAAAGT 57.230 29.630 3.12 0.00 31.93 2.66
2978 3689 9.770097 TCAATCACATTATCTCAAAGTATCTCC 57.230 33.333 0.00 0.00 0.00 3.71
2979 3690 8.706936 CAATCACATTATCTCAAAGTATCTCCG 58.293 37.037 0.00 0.00 0.00 4.63
2980 3691 7.582667 TCACATTATCTCAAAGTATCTCCGA 57.417 36.000 0.00 0.00 0.00 4.55
2981 3692 8.007405 TCACATTATCTCAAAGTATCTCCGAA 57.993 34.615 0.00 0.00 0.00 4.30
2982 3693 8.474831 TCACATTATCTCAAAGTATCTCCGAAA 58.525 33.333 0.00 0.00 0.00 3.46
2983 3694 8.759641 CACATTATCTCAAAGTATCTCCGAAAG 58.240 37.037 0.00 0.00 0.00 2.62
3020 3731 5.871524 GCAGCTGCTAATAATAGACATAGCA 59.128 40.000 31.33 6.22 46.10 3.49
3066 3777 2.363306 TTGAGTTGTGTGGCAGGAAT 57.637 45.000 0.00 0.00 0.00 3.01
3067 3778 1.896220 TGAGTTGTGTGGCAGGAATC 58.104 50.000 0.00 0.00 0.00 2.52
3068 3779 1.168714 GAGTTGTGTGGCAGGAATCC 58.831 55.000 0.00 0.00 0.00 3.01
3069 3780 0.478072 AGTTGTGTGGCAGGAATCCA 59.522 50.000 0.61 0.00 0.00 3.41
3070 3781 0.883833 GTTGTGTGGCAGGAATCCAG 59.116 55.000 0.61 0.00 33.63 3.86
3073 3784 1.021390 GTGTGGCAGGAATCCAGTCG 61.021 60.000 0.61 0.00 33.63 4.18
3074 3785 1.296715 GTGGCAGGAATCCAGTCGT 59.703 57.895 0.61 0.00 33.63 4.34
3075 3786 0.741221 GTGGCAGGAATCCAGTCGTC 60.741 60.000 0.61 0.00 33.63 4.20
3077 3788 1.596934 GCAGGAATCCAGTCGTCCA 59.403 57.895 0.61 0.00 33.57 4.02
3078 3789 0.741221 GCAGGAATCCAGTCGTCCAC 60.741 60.000 0.61 0.00 33.57 4.02
3079 3790 0.608130 CAGGAATCCAGTCGTCCACA 59.392 55.000 0.61 0.00 33.57 4.17
3082 3793 1.066143 GGAATCCAGTCGTCCACACAT 60.066 52.381 0.00 0.00 0.00 3.21
3083 3794 2.271800 GAATCCAGTCGTCCACACATC 58.728 52.381 0.00 0.00 0.00 3.06
3084 3795 1.266178 ATCCAGTCGTCCACACATCA 58.734 50.000 0.00 0.00 0.00 3.07
3085 3796 1.044611 TCCAGTCGTCCACACATCAA 58.955 50.000 0.00 0.00 0.00 2.57
3087 3798 1.270305 CCAGTCGTCCACACATCAAGT 60.270 52.381 0.00 0.00 0.00 3.16
3089 3800 2.221749 CAGTCGTCCACACATCAAGTTG 59.778 50.000 0.00 0.00 0.00 3.16
3090 3801 1.069906 GTCGTCCACACATCAAGTTGC 60.070 52.381 0.00 0.00 0.00 4.17
3091 3802 0.110688 CGTCCACACATCAAGTTGCG 60.111 55.000 0.00 0.00 0.00 4.85
3093 3804 1.195448 GTCCACACATCAAGTTGCGAG 59.805 52.381 0.00 0.00 0.00 5.03
3107 3846 4.479993 CGAGCCAGGCCCCTCTTG 62.480 72.222 8.22 0.00 0.00 3.02
3120 3874 1.742768 CTCTTGGCTAGGCTACCCG 59.257 63.158 18.18 0.00 35.76 5.28
3135 3889 2.446253 CCCGCGTTTGCATTGCATG 61.446 57.895 12.95 6.91 42.97 4.06
3191 3945 6.477360 TGTTTGATTGCATGCATCATATTGTC 59.523 34.615 23.37 9.92 0.00 3.18
3227 3981 4.152647 TCTCAAGAGTGGTGAGAGCTTAA 58.847 43.478 0.04 0.00 45.11 1.85
3251 4005 7.038154 ACAACAAATAACAGCACAACACTAT 57.962 32.000 0.00 0.00 0.00 2.12
3252 4006 8.160521 ACAACAAATAACAGCACAACACTATA 57.839 30.769 0.00 0.00 0.00 1.31
3298 4054 2.163818 TCTTGTCCAAGCTAACCGTG 57.836 50.000 2.09 0.00 38.28 4.94
3299 4055 0.517316 CTTGTCCAAGCTAACCGTGC 59.483 55.000 0.00 0.00 0.00 5.34
3300 4056 0.179043 TTGTCCAAGCTAACCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
3301 4057 0.036164 TGTCCAAGCTAACCGTGCAT 59.964 50.000 0.00 0.00 0.00 3.96
3307 4066 4.083003 TCCAAGCTAACCGTGCATAAAAAG 60.083 41.667 0.00 0.00 0.00 2.27
3315 4074 3.058224 ACCGTGCATAAAAAGACTTGCTC 60.058 43.478 0.00 0.00 36.10 4.26
3316 4075 3.492313 CGTGCATAAAAAGACTTGCTCC 58.508 45.455 0.00 0.00 36.10 4.70
3317 4076 3.189287 CGTGCATAAAAAGACTTGCTCCT 59.811 43.478 0.00 0.00 36.10 3.69
3318 4077 4.391830 CGTGCATAAAAAGACTTGCTCCTA 59.608 41.667 0.00 0.00 36.10 2.94
3319 4078 5.065218 CGTGCATAAAAAGACTTGCTCCTAT 59.935 40.000 0.00 0.00 36.10 2.57
3320 4079 6.261118 GTGCATAAAAAGACTTGCTCCTATG 58.739 40.000 0.00 0.00 36.10 2.23
3321 4080 5.357878 TGCATAAAAAGACTTGCTCCTATGG 59.642 40.000 0.00 0.00 36.10 2.74
3322 4081 5.590259 GCATAAAAAGACTTGCTCCTATGGA 59.410 40.000 0.00 0.00 32.41 3.41
3323 4082 6.264067 GCATAAAAAGACTTGCTCCTATGGAT 59.736 38.462 0.00 0.00 32.41 3.41
3324 4083 7.521261 GCATAAAAAGACTTGCTCCTATGGATC 60.521 40.741 0.00 0.00 32.41 3.36
3325 4084 5.707066 AAAAGACTTGCTCCTATGGATCT 57.293 39.130 0.00 0.00 0.00 2.75
3326 4085 4.686191 AAGACTTGCTCCTATGGATCTG 57.314 45.455 0.00 0.00 0.00 2.90
3327 4086 3.652055 AGACTTGCTCCTATGGATCTGT 58.348 45.455 0.00 0.00 0.00 3.41
3328 4087 4.036518 AGACTTGCTCCTATGGATCTGTT 58.963 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.224670 TGAGTTAACGCTCCCAATGGTT 60.225 45.455 10.78 0.00 34.74 3.67
7 8 1.349688 TGAGTTAACGCTCCCAATGGT 59.650 47.619 10.78 0.00 34.74 3.55
8 9 1.737793 GTGAGTTAACGCTCCCAATGG 59.262 52.381 10.78 0.00 34.74 3.16
9 10 1.737793 GGTGAGTTAACGCTCCCAATG 59.262 52.381 16.80 0.00 34.74 2.82
13 14 2.543238 CGATAGGTGAGTTAACGCTCCC 60.543 54.545 21.95 15.63 34.74 4.30
62 63 1.004440 AGAAGCAGGACGTGGAAGC 60.004 57.895 0.00 0.00 0.00 3.86
91 92 1.615107 CGGCGAACAAGAAGTCCGAC 61.615 60.000 0.00 0.00 39.23 4.79
94 95 2.677979 GGCGGCGAACAAGAAGTCC 61.678 63.158 12.98 0.00 0.00 3.85
129 130 0.336737 GAAGAGGAGGGTCAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
185 186 3.706373 GCAGAAGGCGGAGGTGGA 61.706 66.667 0.00 0.00 0.00 4.02
227 228 1.608717 GACGACCTGGATGAGCTGGT 61.609 60.000 0.00 0.00 35.23 4.00
235 236 2.982130 GGTGCTGACGACCTGGAT 59.018 61.111 0.00 0.00 0.00 3.41
266 267 4.067512 AGAGCCGGGAGAGCTGGA 62.068 66.667 2.18 0.00 41.75 3.86
483 487 4.814041 AGGAGGGCCTGGAGGAGC 62.814 72.222 12.95 0.00 44.90 4.70
492 496 1.962321 GAAGAAGTCGGAGGAGGGCC 61.962 65.000 0.00 0.00 0.00 5.80
493 497 0.973496 AGAAGAAGTCGGAGGAGGGC 60.973 60.000 0.00 0.00 0.00 5.19
494 498 1.107945 GAGAAGAAGTCGGAGGAGGG 58.892 60.000 0.00 0.00 0.00 4.30
504 508 0.615261 GGAGGACCGGGAGAAGAAGT 60.615 60.000 6.32 0.00 0.00 3.01
700 704 1.073897 GCAGAAGCTCCACACCCTT 59.926 57.895 0.00 0.00 37.91 3.95
762 766 0.110823 CTCAACGAAAAACCTCGCCG 60.111 55.000 0.00 0.00 42.69 6.46
764 768 3.001939 TCTTTCTCAACGAAAAACCTCGC 59.998 43.478 0.00 0.00 42.69 5.03
765 769 4.789095 TCTTTCTCAACGAAAAACCTCG 57.211 40.909 0.00 0.00 40.87 4.63
769 773 6.469275 CCACTCTTTCTTTCTCAACGAAAAAC 59.531 38.462 0.00 0.00 40.87 2.43
770 774 6.404293 CCCACTCTTTCTTTCTCAACGAAAAA 60.404 38.462 0.00 0.00 40.87 1.94
771 775 5.065988 CCCACTCTTTCTTTCTCAACGAAAA 59.934 40.000 0.00 0.00 40.87 2.29
772 776 4.574828 CCCACTCTTTCTTTCTCAACGAAA 59.425 41.667 0.00 0.00 39.23 3.46
773 777 4.127171 CCCACTCTTTCTTTCTCAACGAA 58.873 43.478 0.00 0.00 0.00 3.85
774 778 3.494398 CCCCACTCTTTCTTTCTCAACGA 60.494 47.826 0.00 0.00 0.00 3.85
775 779 2.808543 CCCCACTCTTTCTTTCTCAACG 59.191 50.000 0.00 0.00 0.00 4.10
835 844 4.609018 CGTATCAGCCCGGCCCAG 62.609 72.222 5.55 0.00 0.00 4.45
851 860 2.890474 CGTTCGATGGAAGGCCCG 60.890 66.667 0.00 0.00 37.93 6.13
859 868 4.204891 GAACCGCGCGTTCGATGG 62.205 66.667 29.95 13.89 41.51 3.51
912 925 6.086011 AGGGTAAGAGAAGAGAAGAGATCA 57.914 41.667 0.00 0.00 0.00 2.92
991 1004 1.460305 CCCCCGTCATCCTCCTGAT 60.460 63.158 0.00 0.00 0.00 2.90
992 1005 2.041922 CCCCCGTCATCCTCCTGA 60.042 66.667 0.00 0.00 0.00 3.86
1326 1352 0.179018 TCAGGCATCGATCGAGGAGA 60.179 55.000 31.78 21.50 0.00 3.71
1328 1354 0.466372 AGTCAGGCATCGATCGAGGA 60.466 55.000 31.78 16.12 0.00 3.71
1329 1355 0.318529 CAGTCAGGCATCGATCGAGG 60.319 60.000 24.45 24.45 0.00 4.63
1330 1356 0.665298 TCAGTCAGGCATCGATCGAG 59.335 55.000 23.84 15.68 0.00 4.04
1332 1358 2.145958 AATCAGTCAGGCATCGATCG 57.854 50.000 9.36 9.36 0.00 3.69
1333 1359 2.547211 CCAAATCAGTCAGGCATCGATC 59.453 50.000 0.00 0.00 0.00 3.69
1334 1360 2.092753 ACCAAATCAGTCAGGCATCGAT 60.093 45.455 0.00 0.00 0.00 3.59
1345 1375 2.428890 TGCGGAAACAAACCAAATCAGT 59.571 40.909 0.00 0.00 0.00 3.41
1346 1376 3.052036 CTGCGGAAACAAACCAAATCAG 58.948 45.455 0.00 0.00 0.00 2.90
1461 1516 0.971959 GCACTGGATGGCAAATGGGA 60.972 55.000 0.00 0.00 0.00 4.37
1462 1517 1.518774 GCACTGGATGGCAAATGGG 59.481 57.895 0.00 0.00 0.00 4.00
1496 1553 6.872670 ACTGATTTCGACGATTAGAAGAAC 57.127 37.500 0.00 0.00 0.00 3.01
1497 1554 6.691818 GCTACTGATTTCGACGATTAGAAGAA 59.308 38.462 0.00 0.00 0.00 2.52
1499 1556 6.202937 AGCTACTGATTTCGACGATTAGAAG 58.797 40.000 0.00 0.00 0.00 2.85
1501 1558 5.752892 AGCTACTGATTTCGACGATTAGA 57.247 39.130 0.00 0.00 0.00 2.10
1502 1559 5.174035 CCAAGCTACTGATTTCGACGATTAG 59.826 44.000 0.00 0.00 0.00 1.73
1503 1560 5.041287 CCAAGCTACTGATTTCGACGATTA 58.959 41.667 0.00 0.00 0.00 1.75
1508 1565 2.673368 CACCCAAGCTACTGATTTCGAC 59.327 50.000 0.00 0.00 0.00 4.20
1510 1567 2.416547 CACACCCAAGCTACTGATTTCG 59.583 50.000 0.00 0.00 0.00 3.46
1512 1569 2.162681 GCACACCCAAGCTACTGATTT 58.837 47.619 0.00 0.00 0.00 2.17
1513 1570 1.352352 AGCACACCCAAGCTACTGATT 59.648 47.619 0.00 0.00 39.78 2.57
1540 1690 1.984066 ATACAGACCTACTCCGAGCC 58.016 55.000 0.00 0.00 0.00 4.70
1550 1700 6.812160 GCCGATAATTTTCGATATACAGACCT 59.188 38.462 18.24 0.00 41.62 3.85
1551 1701 6.237490 CGCCGATAATTTTCGATATACAGACC 60.237 42.308 18.24 0.00 41.62 3.85
1552 1702 6.307318 ACGCCGATAATTTTCGATATACAGAC 59.693 38.462 18.24 0.00 41.62 3.51
1561 1711 4.785417 ACAAAAACGCCGATAATTTTCGA 58.215 34.783 18.24 0.00 41.62 3.71
1562 1712 5.489011 AACAAAAACGCCGATAATTTTCG 57.511 34.783 10.87 10.87 38.83 3.46
1573 2002 6.698359 TTAAGCATTGATAACAAAAACGCC 57.302 33.333 0.00 0.00 39.54 5.68
1575 2004 8.372521 GGTGATTAAGCATTGATAACAAAAACG 58.627 33.333 0.00 0.00 39.54 3.60
1581 2010 9.330063 CTTAGAGGTGATTAAGCATTGATAACA 57.670 33.333 0.00 0.00 27.31 2.41
1599 2028 3.577848 CAGATATGGCTCTGCTTAGAGGT 59.422 47.826 6.46 0.00 36.53 3.85
1600 2029 3.055963 CCAGATATGGCTCTGCTTAGAGG 60.056 52.174 0.00 0.00 41.12 3.69
1601 2030 3.831333 TCCAGATATGGCTCTGCTTAGAG 59.169 47.826 0.00 0.04 41.12 2.43
1603 2032 3.577848 ACTCCAGATATGGCTCTGCTTAG 59.422 47.826 0.00 0.00 41.12 2.18
1610 2039 3.661944 CACATGACTCCAGATATGGCTC 58.338 50.000 0.00 0.00 0.00 4.70
1618 2047 0.321034 GCAGTGCACATGACTCCAGA 60.321 55.000 21.04 0.00 0.00 3.86
1630 2059 4.254709 AAGGTCCGCTGCAGTGCA 62.255 61.111 22.03 18.58 36.92 4.57
1644 2073 4.125703 GTCACTCATCTATGCAAGGAAGG 58.874 47.826 0.00 0.00 0.00 3.46
1645 2074 4.763073 TGTCACTCATCTATGCAAGGAAG 58.237 43.478 0.00 0.00 0.00 3.46
1646 2075 4.824479 TGTCACTCATCTATGCAAGGAA 57.176 40.909 0.00 0.00 0.00 3.36
1647 2076 4.467438 TCTTGTCACTCATCTATGCAAGGA 59.533 41.667 0.00 0.00 34.02 3.36
1649 2078 4.809958 CCTCTTGTCACTCATCTATGCAAG 59.190 45.833 0.00 0.00 34.27 4.01
1654 2083 5.069781 GCCTAACCTCTTGTCACTCATCTAT 59.930 44.000 0.00 0.00 0.00 1.98
1660 2089 2.037251 TGTGCCTAACCTCTTGTCACTC 59.963 50.000 0.00 0.00 0.00 3.51
1663 2092 2.224523 CCTTGTGCCTAACCTCTTGTCA 60.225 50.000 0.00 0.00 0.00 3.58
1676 2253 1.691434 TGGTTTGAAATCCCTTGTGCC 59.309 47.619 0.00 0.00 0.00 5.01
1678 2255 3.133721 TGGTTGGTTTGAAATCCCTTGTG 59.866 43.478 0.00 0.00 0.00 3.33
1699 2276 9.579768 GTTCCTAGATACTATATCATTGCACTG 57.420 37.037 0.00 0.00 0.00 3.66
1711 2288 8.110908 GTCCATGAGTAGGTTCCTAGATACTAT 58.889 40.741 0.00 0.00 0.00 2.12
1712 2289 7.073343 TGTCCATGAGTAGGTTCCTAGATACTA 59.927 40.741 0.00 0.00 0.00 1.82
1713 2290 6.126156 TGTCCATGAGTAGGTTCCTAGATACT 60.126 42.308 0.00 0.00 0.00 2.12
1714 2291 6.069331 TGTCCATGAGTAGGTTCCTAGATAC 58.931 44.000 0.00 0.00 0.00 2.24
1716 2293 5.144159 TGTCCATGAGTAGGTTCCTAGAT 57.856 43.478 0.00 0.00 0.00 1.98
1720 2297 4.366267 AGATTGTCCATGAGTAGGTTCCT 58.634 43.478 0.00 0.00 0.00 3.36
1723 2300 5.396884 GGCTTAGATTGTCCATGAGTAGGTT 60.397 44.000 0.00 0.00 0.00 3.50
1726 2303 4.503991 GGGGCTTAGATTGTCCATGAGTAG 60.504 50.000 0.00 0.00 0.00 2.57
1732 2309 1.507140 TCGGGGCTTAGATTGTCCAT 58.493 50.000 0.00 0.00 0.00 3.41
1738 2315 2.508526 GATGCAATCGGGGCTTAGATT 58.491 47.619 0.00 0.00 37.55 2.40
1739 2316 1.271597 GGATGCAATCGGGGCTTAGAT 60.272 52.381 0.00 0.00 46.86 1.98
1743 2320 0.773644 ATAGGATGCAATCGGGGCTT 59.226 50.000 0.00 0.00 46.86 4.35
1744 2321 0.326264 GATAGGATGCAATCGGGGCT 59.674 55.000 0.00 0.00 46.86 5.19
1746 2323 1.404717 CGAGATAGGATGCAATCGGGG 60.405 57.143 0.00 0.00 46.86 5.73
1747 2324 1.404717 CCGAGATAGGATGCAATCGGG 60.405 57.143 10.23 0.00 46.86 5.14
1748 2325 2.001812 CCGAGATAGGATGCAATCGG 57.998 55.000 0.00 5.36 46.86 4.18
1749 2326 1.337167 TGCCGAGATAGGATGCAATCG 60.337 52.381 0.00 0.00 46.86 3.34
1750 2327 2.462456 TGCCGAGATAGGATGCAATC 57.538 50.000 0.00 0.00 44.55 2.67
1751 2328 3.430042 AATGCCGAGATAGGATGCAAT 57.570 42.857 0.00 0.00 35.30 3.56
1753 2330 3.165071 TCTAATGCCGAGATAGGATGCA 58.835 45.455 0.00 0.00 36.23 3.96
1754 2331 3.876274 TCTAATGCCGAGATAGGATGC 57.124 47.619 0.00 0.00 0.00 3.91
1755 2332 5.506483 CCGTATCTAATGCCGAGATAGGATG 60.506 48.000 15.47 3.09 41.27 3.51
1756 2333 4.580995 CCGTATCTAATGCCGAGATAGGAT 59.419 45.833 15.47 0.00 41.27 3.24
1758 2335 3.945921 TCCGTATCTAATGCCGAGATAGG 59.054 47.826 10.24 10.24 39.69 2.57
1759 2336 4.035792 CCTCCGTATCTAATGCCGAGATAG 59.964 50.000 0.81 0.00 36.74 2.08
1766 2361 1.941668 GCAGCCTCCGTATCTAATGCC 60.942 57.143 0.00 0.00 0.00 4.40
1771 2366 2.651382 TACTGCAGCCTCCGTATCTA 57.349 50.000 15.27 0.00 0.00 1.98
1778 2373 0.250510 GGCCTTATACTGCAGCCTCC 60.251 60.000 15.27 1.80 40.57 4.30
1779 2374 3.314083 GGCCTTATACTGCAGCCTC 57.686 57.895 15.27 0.00 40.57 4.70
1789 2384 1.590591 TGCACCCAAGAGGCCTTATA 58.409 50.000 6.77 0.00 40.58 0.98
1790 2385 0.704076 TTGCACCCAAGAGGCCTTAT 59.296 50.000 6.77 0.00 40.58 1.73
1791 2386 2.159713 TTGCACCCAAGAGGCCTTA 58.840 52.632 6.77 0.00 40.58 2.69
1792 2387 2.934369 TTGCACCCAAGAGGCCTT 59.066 55.556 6.77 0.00 40.58 4.35
1800 2395 2.597217 CCGAAGGCTTGCACCCAA 60.597 61.111 3.46 0.00 46.14 4.12
1812 2407 1.883084 GGTATGCCAGCGACCGAAG 60.883 63.158 0.00 0.00 34.09 3.79
1813 2408 2.185867 GGTATGCCAGCGACCGAA 59.814 61.111 0.00 0.00 34.09 4.30
1814 2409 3.071837 TGGTATGCCAGCGACCGA 61.072 61.111 0.00 0.00 40.46 4.69
1838 2433 6.873997 TGTCCGTAATGATGAATTAGTCTGT 58.126 36.000 0.00 0.00 31.22 3.41
1842 2437 7.957002 AGAGATGTCCGTAATGATGAATTAGT 58.043 34.615 0.00 0.00 31.22 2.24
1864 2459 5.104735 ACCAGGAAGCAACCTCTTTATAGAG 60.105 44.000 3.38 3.38 46.24 2.43
1876 2477 1.604278 GTCACAAGACCAGGAAGCAAC 59.396 52.381 0.00 0.00 38.89 4.17
1882 2483 2.910688 GTGAAGTCACAAGACCAGGA 57.089 50.000 6.57 0.00 46.15 3.86
1892 2493 2.851008 GCGCAAACTCTTGTGAAGTCAC 60.851 50.000 0.30 4.43 44.36 3.67
1896 2497 1.331756 ACAGCGCAAACTCTTGTGAAG 59.668 47.619 11.47 0.00 44.36 3.02
1912 2513 1.332375 TCGTTGCACAAAACCTACAGC 59.668 47.619 0.00 0.00 0.00 4.40
1915 2516 4.393680 TCCATATCGTTGCACAAAACCTAC 59.606 41.667 0.00 0.00 0.00 3.18
1918 2519 3.840890 TCCATATCGTTGCACAAAACC 57.159 42.857 0.00 0.00 0.00 3.27
1919 2520 4.089923 GCTTTCCATATCGTTGCACAAAAC 59.910 41.667 0.00 0.00 0.00 2.43
1931 2532 5.776744 CAAGCTTATTGGGCTTTCCATATC 58.223 41.667 0.00 0.00 46.24 1.63
1934 2535 2.169144 GCAAGCTTATTGGGCTTTCCAT 59.831 45.455 0.00 0.00 46.24 3.41
1937 2538 3.256558 CAAGCAAGCTTATTGGGCTTTC 58.743 45.455 15.99 0.00 46.24 2.62
2000 2603 2.708216 TTATTTCCAGCGCTCCATCA 57.292 45.000 7.13 0.00 0.00 3.07
2001 2604 5.645497 AGATATTTATTTCCAGCGCTCCATC 59.355 40.000 7.13 0.00 0.00 3.51
2009 2612 6.624352 TCAGCACAGATATTTATTTCCAGC 57.376 37.500 0.00 0.00 0.00 4.85
2051 2658 6.420008 TGAAGAAACGAACTAGAAGTAGCAAC 59.580 38.462 0.00 0.00 0.00 4.17
2058 2665 7.851508 TGTTTGATGAAGAAACGAACTAGAAG 58.148 34.615 0.00 0.00 36.30 2.85
2061 2668 7.017645 CCATGTTTGATGAAGAAACGAACTAG 58.982 38.462 0.00 0.00 36.30 2.57
2090 2697 7.554835 ACAAACCGAGCCATTACTAATTTATCA 59.445 33.333 0.00 0.00 0.00 2.15
2094 2701 5.708230 TCACAAACCGAGCCATTACTAATTT 59.292 36.000 0.00 0.00 0.00 1.82
2100 2707 3.907894 TTTCACAAACCGAGCCATTAC 57.092 42.857 0.00 0.00 0.00 1.89
2131 2738 4.039004 TGGCAGCATAGCTTTTGAGAAAAA 59.961 37.500 0.00 0.00 36.40 1.94
2134 2741 2.751259 CTGGCAGCATAGCTTTTGAGAA 59.249 45.455 0.00 0.00 36.40 2.87
2136 2743 2.089980 ACTGGCAGCATAGCTTTTGAG 58.910 47.619 15.89 0.00 36.40 3.02
2137 2744 2.205022 ACTGGCAGCATAGCTTTTGA 57.795 45.000 15.89 0.00 36.40 2.69
2138 2745 3.308438 AAACTGGCAGCATAGCTTTTG 57.692 42.857 15.89 0.00 36.40 2.44
2139 2746 4.082125 AGTAAACTGGCAGCATAGCTTTT 58.918 39.130 15.89 8.26 36.40 2.27
2178 2786 4.177026 AGCATACTCTTGACTAAGCAACG 58.823 43.478 0.00 0.00 33.82 4.10
2184 2792 5.046304 AGCCTTGAAGCATACTCTTGACTAA 60.046 40.000 0.00 0.00 34.23 2.24
2187 2795 3.604582 AGCCTTGAAGCATACTCTTGAC 58.395 45.455 0.00 0.00 34.23 3.18
2188 2796 3.988976 AGCCTTGAAGCATACTCTTGA 57.011 42.857 0.00 0.00 34.23 3.02
2189 2797 6.459298 CCATTTAGCCTTGAAGCATACTCTTG 60.459 42.308 0.00 0.00 34.23 3.02
2190 2798 5.591877 CCATTTAGCCTTGAAGCATACTCTT 59.408 40.000 0.00 0.00 34.23 2.85
2191 2799 5.128919 CCATTTAGCCTTGAAGCATACTCT 58.871 41.667 0.00 0.00 34.23 3.24
2192 2800 4.884164 ACCATTTAGCCTTGAAGCATACTC 59.116 41.667 0.00 0.00 34.23 2.59
2193 2801 4.860022 ACCATTTAGCCTTGAAGCATACT 58.140 39.130 0.00 0.00 34.23 2.12
2202 2810 4.460382 AGTGATCACAACCATTTAGCCTTG 59.540 41.667 27.02 0.00 0.00 3.61
2226 2850 7.284034 AGACAAATCAGGATTAATCATCACCAC 59.716 37.037 17.07 0.00 32.79 4.16
2242 2866 7.475015 TGAAGAAAGAAACACAGACAAATCAG 58.525 34.615 0.00 0.00 0.00 2.90
2243 2867 7.336679 TCTGAAGAAAGAAACACAGACAAATCA 59.663 33.333 0.00 0.00 31.02 2.57
2244 2868 7.697691 TCTGAAGAAAGAAACACAGACAAATC 58.302 34.615 0.00 0.00 31.02 2.17
2245 2869 7.630242 TCTGAAGAAAGAAACACAGACAAAT 57.370 32.000 0.00 0.00 31.02 2.32
2259 2933 5.479306 TCCCATCTACGTTTCTGAAGAAAG 58.521 41.667 5.74 3.88 43.82 2.62
2286 2972 2.158827 GGCCTCCTCCTCTTTCATCTTC 60.159 54.545 0.00 0.00 0.00 2.87
2328 3014 1.207791 CAGCAGGACAGTCCCCTAAT 58.792 55.000 16.72 0.00 37.19 1.73
2329 3015 0.909610 CCAGCAGGACAGTCCCCTAA 60.910 60.000 16.72 0.00 37.19 2.69
2330 3016 1.306141 CCAGCAGGACAGTCCCCTA 60.306 63.158 16.72 0.00 37.19 3.53
2331 3017 2.608988 CCAGCAGGACAGTCCCCT 60.609 66.667 16.72 10.13 37.19 4.79
2340 3026 2.587247 GGCAGAGTCACCAGCAGGA 61.587 63.158 0.35 0.00 38.69 3.86
2436 3124 9.911788 ATAGTTAATCAACATCTTGGACTCATT 57.088 29.630 0.00 0.00 37.10 2.57
2442 3130 6.038603 GCAGCATAGTTAATCAACATCTTGGA 59.961 38.462 0.00 0.00 37.10 3.53
2448 3136 6.261826 GGAAGAGCAGCATAGTTAATCAACAT 59.738 38.462 0.00 0.00 37.10 2.71
2491 3179 5.396324 CCCTATGAACCTGCTACATTACACA 60.396 44.000 0.00 0.00 0.00 3.72
2503 3191 3.652057 ACCAATCACCCTATGAACCTG 57.348 47.619 0.00 0.00 41.93 4.00
2505 3193 3.119137 GCAAACCAATCACCCTATGAACC 60.119 47.826 0.00 0.00 41.93 3.62
2515 3203 2.793278 AAAGACCGCAAACCAATCAC 57.207 45.000 0.00 0.00 0.00 3.06
2517 3205 3.489416 GTGAAAAAGACCGCAAACCAATC 59.511 43.478 0.00 0.00 0.00 2.67
2568 3258 1.669795 GCATTACAAAGTGTGGCAGGC 60.670 52.381 0.00 0.00 0.00 4.85
2599 3290 6.025749 TCCTGATTATATGACCGATGTGAC 57.974 41.667 0.00 0.00 0.00 3.67
2601 3292 7.326454 AGAATCCTGATTATATGACCGATGTG 58.674 38.462 0.00 0.00 0.00 3.21
2671 3363 9.598517 AACAAACACACACTCATAATTTTGATT 57.401 25.926 0.00 0.00 0.00 2.57
2686 3378 9.772973 ACTATGAGAATAACTAACAAACACACA 57.227 29.630 0.00 0.00 0.00 3.72
2710 3402 3.497405 CCCTGCAGTGCCAATGATATACT 60.497 47.826 13.72 0.00 0.00 2.12
2711 3403 2.816087 CCCTGCAGTGCCAATGATATAC 59.184 50.000 13.72 0.00 0.00 1.47
2712 3404 2.442878 ACCCTGCAGTGCCAATGATATA 59.557 45.455 13.72 0.00 0.00 0.86
2713 3405 1.216175 ACCCTGCAGTGCCAATGATAT 59.784 47.619 13.72 0.00 0.00 1.63
2747 3439 4.707448 TGACCTTTTTCTGCCACAACTAAA 59.293 37.500 0.00 0.00 0.00 1.85
2748 3440 4.274147 TGACCTTTTTCTGCCACAACTAA 58.726 39.130 0.00 0.00 0.00 2.24
2749 3441 3.882888 CTGACCTTTTTCTGCCACAACTA 59.117 43.478 0.00 0.00 0.00 2.24
2750 3442 2.689983 CTGACCTTTTTCTGCCACAACT 59.310 45.455 0.00 0.00 0.00 3.16
2751 3443 2.687935 TCTGACCTTTTTCTGCCACAAC 59.312 45.455 0.00 0.00 0.00 3.32
2752 3444 3.011566 TCTGACCTTTTTCTGCCACAA 57.988 42.857 0.00 0.00 0.00 3.33
2753 3445 2.727123 TCTGACCTTTTTCTGCCACA 57.273 45.000 0.00 0.00 0.00 4.17
2755 3447 6.603201 CCTATTATTCTGACCTTTTTCTGCCA 59.397 38.462 0.00 0.00 0.00 4.92
2757 3449 7.770897 TCTCCTATTATTCTGACCTTTTTCTGC 59.229 37.037 0.00 0.00 0.00 4.26
2760 3452 9.674068 AGTTCTCCTATTATTCTGACCTTTTTC 57.326 33.333 0.00 0.00 0.00 2.29
2761 3453 9.454859 CAGTTCTCCTATTATTCTGACCTTTTT 57.545 33.333 0.00 0.00 0.00 1.94
2762 3454 8.049721 CCAGTTCTCCTATTATTCTGACCTTTT 58.950 37.037 0.00 0.00 0.00 2.27
2765 3457 6.325286 GTCCAGTTCTCCTATTATTCTGACCT 59.675 42.308 0.00 0.00 0.00 3.85
2766 3458 6.325286 AGTCCAGTTCTCCTATTATTCTGACC 59.675 42.308 0.00 0.00 0.00 4.02
2767 3459 7.354751 AGTCCAGTTCTCCTATTATTCTGAC 57.645 40.000 0.00 0.00 0.00 3.51
2779 3484 5.086104 TGTTGCTTATAGTCCAGTTCTCC 57.914 43.478 0.00 0.00 0.00 3.71
2808 3519 8.170061 TCCTCCCAGATATCAAAAGAAAAAGAA 58.830 33.333 5.32 0.00 0.00 2.52
2809 3520 7.698912 TCCTCCCAGATATCAAAAGAAAAAGA 58.301 34.615 5.32 0.00 0.00 2.52
2810 3521 7.944729 TCCTCCCAGATATCAAAAGAAAAAG 57.055 36.000 5.32 0.00 0.00 2.27
2823 3534 2.173356 CTGGCACATTTCCTCCCAGATA 59.827 50.000 0.00 0.00 44.50 1.98
2854 3565 9.249053 CCTATACATCACTCTATTCTATGGTGT 57.751 37.037 0.00 0.00 39.64 4.16
2913 3624 7.728532 ACCAAATTACCTTAACCAAGAAGTCAT 59.271 33.333 0.00 0.00 33.20 3.06
2914 3625 7.064229 ACCAAATTACCTTAACCAAGAAGTCA 58.936 34.615 0.00 0.00 33.20 3.41
2915 3626 7.229907 TGACCAAATTACCTTAACCAAGAAGTC 59.770 37.037 0.00 0.00 33.20 3.01
2916 3627 7.064229 TGACCAAATTACCTTAACCAAGAAGT 58.936 34.615 0.00 0.00 33.20 3.01
2918 3629 8.364142 CAATGACCAAATTACCTTAACCAAGAA 58.636 33.333 0.00 0.00 33.20 2.52
2921 3632 6.782988 TCCAATGACCAAATTACCTTAACCAA 59.217 34.615 0.00 0.00 0.00 3.67
2922 3633 6.209788 GTCCAATGACCAAATTACCTTAACCA 59.790 38.462 0.00 0.00 35.34 3.67
2923 3634 6.624204 CGTCCAATGACCAAATTACCTTAACC 60.624 42.308 0.00 0.00 38.32 2.85
2924 3635 6.149807 TCGTCCAATGACCAAATTACCTTAAC 59.850 38.462 0.00 0.00 38.32 2.01
2925 3636 6.239396 TCGTCCAATGACCAAATTACCTTAA 58.761 36.000 0.00 0.00 38.32 1.85
2927 3638 4.658063 TCGTCCAATGACCAAATTACCTT 58.342 39.130 0.00 0.00 38.32 3.50
2928 3639 4.295141 TCGTCCAATGACCAAATTACCT 57.705 40.909 0.00 0.00 38.32 3.08
2929 3640 6.485313 TGATATCGTCCAATGACCAAATTACC 59.515 38.462 0.00 0.00 38.32 2.85
2930 3641 7.490962 TGATATCGTCCAATGACCAAATTAC 57.509 36.000 0.00 0.00 38.32 1.89
2931 3642 8.690203 ATTGATATCGTCCAATGACCAAATTA 57.310 30.769 0.00 0.00 38.32 1.40
2932 3643 7.285172 TGATTGATATCGTCCAATGACCAAATT 59.715 33.333 0.00 0.00 38.32 1.82
2933 3644 6.772233 TGATTGATATCGTCCAATGACCAAAT 59.228 34.615 0.00 0.00 38.32 2.32
2934 3645 6.038161 GTGATTGATATCGTCCAATGACCAAA 59.962 38.462 0.00 0.00 38.32 3.28
2935 3646 5.527214 GTGATTGATATCGTCCAATGACCAA 59.473 40.000 0.00 0.00 38.32 3.67
2938 3649 6.791887 ATGTGATTGATATCGTCCAATGAC 57.208 37.500 0.00 0.00 37.39 3.06
2939 3650 9.154847 GATAATGTGATTGATATCGTCCAATGA 57.845 33.333 0.00 0.00 33.57 2.57
2941 3652 9.376075 GAGATAATGTGATTGATATCGTCCAAT 57.624 33.333 0.00 0.00 35.87 3.16
2942 3653 8.367156 TGAGATAATGTGATTGATATCGTCCAA 58.633 33.333 0.00 0.00 33.23 3.53
2943 3654 7.895759 TGAGATAATGTGATTGATATCGTCCA 58.104 34.615 0.00 1.08 33.23 4.02
2946 3657 9.770097 ACTTTGAGATAATGTGATTGATATCGT 57.230 29.630 0.00 0.00 33.23 3.73
2952 3663 9.770097 GGAGATACTTTGAGATAATGTGATTGA 57.230 33.333 0.00 0.00 0.00 2.57
2953 3664 8.706936 CGGAGATACTTTGAGATAATGTGATTG 58.293 37.037 0.00 0.00 0.00 2.67
2954 3665 8.642432 TCGGAGATACTTTGAGATAATGTGATT 58.358 33.333 0.00 0.00 0.00 2.57
2955 3666 8.183104 TCGGAGATACTTTGAGATAATGTGAT 57.817 34.615 0.00 0.00 0.00 3.06
2956 3667 7.582667 TCGGAGATACTTTGAGATAATGTGA 57.417 36.000 0.00 0.00 0.00 3.58
2957 3668 8.648557 TTTCGGAGATACTTTGAGATAATGTG 57.351 34.615 0.00 0.00 35.04 3.21
2958 3669 7.928706 CCTTTCGGAGATACTTTGAGATAATGT 59.071 37.037 0.00 0.00 35.04 2.71
2959 3670 7.928706 ACCTTTCGGAGATACTTTGAGATAATG 59.071 37.037 0.00 0.00 35.04 1.90
2960 3671 8.024145 ACCTTTCGGAGATACTTTGAGATAAT 57.976 34.615 0.00 0.00 35.04 1.28
2961 3672 7.419711 ACCTTTCGGAGATACTTTGAGATAA 57.580 36.000 0.00 0.00 35.04 1.75
2962 3673 7.419711 AACCTTTCGGAGATACTTTGAGATA 57.580 36.000 0.00 0.00 35.04 1.98
2963 3674 5.941555 ACCTTTCGGAGATACTTTGAGAT 57.058 39.130 0.00 0.00 35.04 2.75
2964 3675 5.740290 AACCTTTCGGAGATACTTTGAGA 57.260 39.130 0.00 0.00 35.04 3.27
2965 3676 6.803154 AAAACCTTTCGGAGATACTTTGAG 57.197 37.500 0.00 0.00 35.04 3.02
2986 3697 9.734620 CTATTATTAGCAGCTGCAACATAAAAA 57.265 29.630 38.24 23.43 45.16 1.94
2987 3698 9.119418 TCTATTATTAGCAGCTGCAACATAAAA 57.881 29.630 38.24 22.07 45.16 1.52
2988 3699 8.559536 GTCTATTATTAGCAGCTGCAACATAAA 58.440 33.333 38.24 23.52 45.16 1.40
2989 3700 7.714813 TGTCTATTATTAGCAGCTGCAACATAA 59.285 33.333 38.24 31.16 45.16 1.90
2990 3701 7.216494 TGTCTATTATTAGCAGCTGCAACATA 58.784 34.615 38.24 26.00 45.16 2.29
2991 3702 6.057533 TGTCTATTATTAGCAGCTGCAACAT 58.942 36.000 38.24 26.98 45.16 2.71
3050 3761 0.478072 TGGATTCCTGCCACACAACT 59.522 50.000 3.95 0.00 0.00 3.16
3066 3777 1.000843 CTTGATGTGTGGACGACTGGA 59.999 52.381 0.00 0.00 0.00 3.86
3067 3778 1.270305 ACTTGATGTGTGGACGACTGG 60.270 52.381 0.00 0.00 0.00 4.00
3068 3779 2.154854 ACTTGATGTGTGGACGACTG 57.845 50.000 0.00 0.00 0.00 3.51
3069 3780 2.483876 CAACTTGATGTGTGGACGACT 58.516 47.619 0.00 0.00 0.00 4.18
3070 3781 1.069906 GCAACTTGATGTGTGGACGAC 60.070 52.381 0.00 0.00 0.00 4.34
3073 3784 1.195448 CTCGCAACTTGATGTGTGGAC 59.805 52.381 0.00 0.00 32.67 4.02
3074 3785 1.511850 CTCGCAACTTGATGTGTGGA 58.488 50.000 0.00 0.00 32.67 4.02
3075 3786 0.110056 GCTCGCAACTTGATGTGTGG 60.110 55.000 0.00 0.00 32.67 4.17
3077 3788 0.534877 TGGCTCGCAACTTGATGTGT 60.535 50.000 0.00 0.00 32.67 3.72
3078 3789 0.167470 CTGGCTCGCAACTTGATGTG 59.833 55.000 0.00 0.00 0.00 3.21
3079 3790 0.957395 CCTGGCTCGCAACTTGATGT 60.957 55.000 0.00 0.00 0.00 3.06
3082 3793 2.669569 GCCTGGCTCGCAACTTGA 60.670 61.111 12.43 0.00 0.00 3.02
3083 3794 3.741476 GGCCTGGCTCGCAACTTG 61.741 66.667 19.68 0.00 0.00 3.16
3090 3801 4.479993 CAAGAGGGGCCTGGCTCG 62.480 72.222 19.68 0.00 0.00 5.03
3091 3802 4.120755 CCAAGAGGGGCCTGGCTC 62.121 72.222 19.68 15.69 0.00 4.70
3107 3846 3.381333 AAACGCGGGTAGCCTAGCC 62.381 63.158 12.47 10.00 44.76 3.93
3115 3854 1.590610 ATGCAATGCAAACGCGGGTA 61.591 50.000 13.45 0.00 43.62 3.69
3120 3874 1.363145 ATGCCATGCAATGCAAACGC 61.363 50.000 13.45 14.32 44.97 4.84
3191 3945 5.178996 CACTCTTGAGAAAAGATGACCACAG 59.821 44.000 4.49 0.00 0.00 3.66
3221 3975 6.142818 TGTGCTGTTATTTGTTGTTAAGCT 57.857 33.333 0.00 0.00 0.00 3.74
3222 3976 6.254589 TGTTGTGCTGTTATTTGTTGTTAAGC 59.745 34.615 0.00 0.00 0.00 3.09
3227 3981 5.323371 AGTGTTGTGCTGTTATTTGTTGT 57.677 34.783 0.00 0.00 0.00 3.32
3251 4005 6.436261 CGAGTAACGCCTTCTATTTGATCTA 58.564 40.000 0.00 0.00 34.51 1.98
3252 4006 5.282510 CGAGTAACGCCTTCTATTTGATCT 58.717 41.667 0.00 0.00 34.51 2.75
3298 4054 5.590259 TCCATAGGAGCAAGTCTTTTTATGC 59.410 40.000 0.00 0.00 39.06 3.14
3299 4055 7.718753 AGATCCATAGGAGCAAGTCTTTTTATG 59.281 37.037 3.96 0.00 41.08 1.90
3300 4056 7.718753 CAGATCCATAGGAGCAAGTCTTTTTAT 59.281 37.037 3.96 0.00 41.08 1.40
3301 4057 7.050377 CAGATCCATAGGAGCAAGTCTTTTTA 58.950 38.462 3.96 0.00 41.08 1.52
3307 4066 4.414337 AACAGATCCATAGGAGCAAGTC 57.586 45.455 3.96 0.00 41.08 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.