>input_sequence_54324
--------------------------------------------------------------------------------
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----------------------------------------------------ATGACGGGGGGGAAGATGGCGGCGGCGA
CGGCGGCGAGGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGG
GGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCT
CGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCG
CCGCCGAGAAGTAATGAGAAGCCCCGCCCCCCATTTC-------------CCTCCCCGCCATCTGCTCTGCTCTCCTCGA
----TCGATGCCTGACTGATTTG---------------GTTTGTTTCCGCAGGCGTGCCAACACCGTTGAGCTGATGAAG
AAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTC----------ATCCTTCCTCTTGTGCTTCCTGCTGTTCCCA
TTTGCCATCCAGTG--CCCCACACATTGCAGTGTTCTTCTAATCGTCGAA------------------------------
-------------------------------------------ATCAGTAGCTTGGGTGTGC------------------
--TGTTTATGGCTCGGAGTAGGTCTGTATATCGAAA------A-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTAT
CGGCGTTTTTGTTATCAATGCTTAATCACCTCTAAGCAGAGCCATATCTGGAGTCATGTGCACTGCAGCGGACCTTCCTT
GCATAGATGAGTGACAAGAGGT----------------------------------------------------------
--------------------------------------------------------------------------------
----------TAGGCACAAGGGATTTCAAACCAACCAGTGCAATGATATAGTATCTAGGAACCTACTCATGGACAATCTA
AGCCCCGATTGCATCCTATCT------------------CGGCATTAGATACGGAGGCTGCAGTATAAGGCCTCTTGGGT
GCAAGCCTTCGGTCGCTGGCATACCATTCAAAACAGACTAATTCATCATTACGGACATCTCTA------TAAAGAGGTTG
CTTCCTGGTCTTGTGACTTCACAAGAGTTTGCGCTGTAGGTTTTGTGCAACGATATGGAAAGCCCAATAA--GCTTGCTT
GTAAGATGAGCGCAACCTATTCTGGTTAGGCTGCTAGGATGGTGATGGAGCGCTGGAAATAAATATC----TGTGCTGAT
AATTAAATTCCTGGATAGTTGCTACTTCTAGTTCGTTTCTTCATCAAACATGGATATGATAAATTAGTAATGGCTCGGTT
TGTGAAAATATGTGTTTTTTTTCTCAAAAGCTATGCTGCCAGTTTACTT-GAGTTCTTACTCAAGCGTTGCTTAGTCAAG
AGTATGCTTCAAGGCTAAATGG----------------TTGTGATCACTGTGGTGATGATTAATCCTGA-----------
---------------------------------------TTTGTCTGTGTTTC------------TTTCTTCAGAAACGT
AGATGGGATAAGAAGATGAAAGAGGAGGAGGCCGCGGCAGCAAAGGCTACTTAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------
>chr1B_1_TraesCS1B01G053500
AGCACCAACCATTGGGAGCGTTAACTCACCTATCGTCTGGCACGGCCATAGCAGCGCCGGACGCTTCCACGTCCTGCTTC
TCCGCCTCATCGTCGGACTTCTTGTTCGCCGCCGCCTCCGCCTCCATCATCCTCCTGACCCTCCTCTTCTCCTTCTTCTC
CTTCCTCCTCTCCTCCCTCCGCCGCTCCACCTCCGCCTTCTGCGCCAGGGCCGCCTCGTCCACCACCACCAGCTCATCCA
GGTCGTCAGCACCGTCCGCTTCCGGGTCCAGCTCTCCCGGCTCTCCGTCGGACTTCTTCTTCGCGGCCGCGGCCGCCTCC
GCCAACTTCCTCGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGTCG
CTCCAGCTCCGCCTTCGACACAGGGTCCGCCTCGCCCCCCACGGCCGGCTCCTCCAGGG---CCGCAACGTCCACCGCCG
GCTGCGGCTCCTCCAGGCCCTCCTCCGACTTCTTCTCCCGGTCCTCCGCGTCCACCGCCGGAGCGGGTGATTTCTCCGGA
GACGCCTTCTTGTTCTTGGCACTATTGGTCCGGGGAGGGCGAGGCCCCGGGCGCTTGGGCCGGGGCCGCTTGGAGGCCAC
CAGCCGCACCTTTATCTTCCTCGCCTCTGCGGCAGCCTCCCCCTCGGCGCCCCCGCCGGGGAGAAGGGTGTGGAGCTTCT
GCTTCAGCTTCTTGCGGGCGAGCACCATGGCGGCGGCGGCGGCGGCGGCGAGGTTTTTCGTTGAGAAAGAAAGAGTGGGG
AGAGGAAGAGAGGGCGAGA-----CGAGACGGCAAGGTTTATACTGGGCCGGGCTGATACGGGCCTTCC----ATCGAAC
GCGCGGTTCGGCCCATCAGGGGACGGCCCGGCCCGACGGGAGATTGATCTCTTCTCTTCTCTTACCCTAGCAGCTTAGGG
AAGCCGCCGCCGCCGACGTGGAGCAGAGCAGAGCAGCAGAGCGATCAGGAGGATGACGGGGGGGAAGATGGCGGCGGCGA
CGGCGGCGAGGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGG
GGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCT
CGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCG
CCGCCGAGAAGTAATGAGAAGCCCCGCCCCCCATTTC-------------CCTCCCCGCCATCTGCTCTGCTCTCCTCGA
----TCGATGCCTGACTGATTTG---------------GTTTGTTTCCGCAGGCGTGCCAACACCGTTGAGCTGATGAAG
AAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTC----------ATCCTTCCTCTTGTGCTTCCTGCTGTTCCCA
TTTGCCATCCAGTG--CCCCACACATTGCAGTGTTCTTCTAATCGTCGAA------------------------------
-------------------------------------------ATCAGTAGCTTGGGTGTGC------------------
--TGTTTATGGCTCGGAGTAGGTCTGTATATCGAAA------A-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTAT
CGGCGTTTTTGTTATCAATGCTTAATCACCTCTAAGCAGAGCCATATCTGGAGTCATGTGCACTGCAGCGGACCTTCCTT
GCATAGATGAGTGACAAGAGGT----------------------------------------------------------
--------------------------------------------------------------------------------
----------TAGGCACAAGGGATTTCAAACCAACCAGTGCAATGATATAGTATCTAGGAACCTACTCATGGACAATCTA
AGCCCCGATTGCATCCTATCT------------------CGGCATTAGATACGGAGGCTGCAGTATAAGGCCTCTTGGGT
GCAAGCCTTCGGTCGCTGGCATACCATTCAAAACAGACTAATTCATCATTACGGACATCTCTA------TAAAGAGGTTG
CTTCCTGGTCTTGTGACTTCACAAGAGTTTGCGCTGTAGGTTTTGTGCAACGATATGGAAAGCCCAATAA--GCTTGCTT
GTAAGATGAGCGCAACCTATTCTGGTTAGGCTGCTAGGATGGTGATGGAGCGCTGGAAATAAATATC----TGTGCTGAT
AATTAAATTCCTGGATAGTTGCTACTTCTAGTTCGTTTCTTCATCAAACATGGATATGATAAATTAGTAATGGCTCGGTT
TGTGAAAATATGTGTTTTTTTTCTCAAAAGCTATGCTGCCAGTTTACTT-GAGTTCTTACTCAAGCGTTGCTTAGTCAAG
AGTATGCTTCAAGGCTAAATGG----------------TTGTGATCACTGTGGTGATGATTAATCCTGA-----------
---------------------------------------TTTGTCTGTGTTTC------------TTTCTTCAGAAACGT
AGATGGGATAAGAAGATGAAAGAGGAGGAGGCCGCGGCAGCAAAGGCTACTTAATTAGGGGACTGTCCTGCTGGTGACTC
TGCCGTTTGTTGTGGCAATCGGGAAGGAACTCATAATATAAGCATATTCTGCGCACAATGAAACTAG--TCCCTTTTTTG
TTTAATGAGTCCAAGATGTTGATTAACTATGCTGCTCTTCCTGAATAAGGTCGAAGGGTGTGTAATGTAGCAGGTTCATA
GGGTGATTGG--TTTGCGGTCTTTTTCACATTTACTGGTTTTTCCAGCTCTGCTGCCGCCTGCCACACTTTGTAATGCAA
TTTTTTT-TGTCACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAACCTGCATTGAACCCAACTTGTTTGCTGAAA
CAAATCAAAATTATGAGTGTGTGTTTGTTAGTTATTCTCATAGTATATCATTGGCACTGCAGGGTTTCTTTCTGTGTGTT
TAGTTGTGGCAGAAAAAGGTC-------------AGAATAATAGGAGAACTGGACTATAAGCAACAT------TTTTTTT
CTTTTTCTTTTGATATCTGGGAGGAAATGTGCCAGTATATCTAGACACCATAGAATAGAGTGATGTATAGGGCATATTTA
AAACTATTATTGCACACAAGAATATGACTTCTTGGTTAAGGTAATTTGGTCATTGGACGATATCAATCACATTATCTCAA
AGTATCTCCGAAAGGTTTTTTATGTTGCAGCTGCTAATAATAGACATAGCATGGGTATGTGTCATATACACACACATTTG
AGTTGTGTGGCAGGAATCCAGTCGTCCACACATCAAGTTGCGAGCC----------------------------AGGCCC
CTCTTGGCTAGGCT---------------ACCCGCGTTTGCATTGCATGGCATCTAGTGCTCGAGATGCTATCGCACCAT
GTTTGATTGCATGCATCATATTGTCTGTGGTCATCTTTTCTCAAGAGTGGTGAGAGCTTAACAACAAATAACAGCACAAC
ACTATAGATCAAATAG--AAGGCGTTACTCGCCATCTTGTCCAAGCTAACCGTGCAT---AAAAAGACTTGCTCCTATGG
ATCTGTT
>chr1D_11
----------ATTCGGAGCGTTAACTCACCTGTCGTCTGGCACGGCCGGATCAGCGCCGGCCACTTCCACGTCCTGCTCC
TCCGCCTCTTCATCAGACTTCTTGTTCGCCGCCGCCTCCGCCTCCATCAGTCTCCTGACCCTCCTCTTCTCCTTCTTCTC
CTTCCTCCTCTCCTCCCTCCGCCGCATCACCTCCGCCTTCTGCGCCAGGGCCGCCTCGTCCACCT---CCAGCTCCTCCA
GGTCCTCAGCACCGTCAGCTTCAAGGCCCTGCTTCCCCGGCTCTTCCTCGGACTTCTTGTTCGCGGCGGCCTCCGCCTCC
GCCAACTTCCTCGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGTCG
CTCCAGCTCCGCCTTCGACGCAGGTTCCCCCTCG---CCCACGGCAGGCTCCTCCAGGCCCTCCGCAACGTCCACCGCCG
GCT---------------CCTCCTCCGCCTTCTCCTCCGGGTCCTCCACGTCCACCGCCGGAGCGGGTGACTTCTCCGGA
GACGCCTTCTTGTTCTTGGCACTCTTGGTCCGGGGAGGGCGGGGCCCCGGACGCTTGGGCCGGGGCCGCTTGGAGGCCAC
CAGCCGCACCTTTATCTTCCTCGCCTCCGCGGCGGCCTCCCCCTCGGCGCCCCCGCCGGGGAGGAGCGTGTGGAGCTTCT
GCTTCAGCTTCTTGCGGGCGAGCACCATGGCGGCGGCGGCGAGGTTTTTG---------GTTGAGAAAGAAAGAGTGGGG
AGAGGAAGAGAGGGCGAGACGAGACGAGACGGCAAGGTTTATATTGGGCCGGGCTGATATGGGCCGTAC----ACGAAAC
ATGCGGCTCGGCCCATCAAGGCCCGAC----------GGGAGATCGATCTCTTCTCAGCTCTCCTCTTACCCT-------
-AGCCGCCGCCGCCGACGTGGAGCAGAGCAGCAGAGCGAACAC--------GATGACGGGGGGGAAGATGGCGGCGGCGA
CGGCGGCGAAGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGG
GGGTACTGGGAGCTGGGCGCGTGGAAGCCGCTGGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCT
CGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCG
CCGCCGAGAAGT---GAGAAGCCCTGCCCCCCATTCCCTCCGTTCCTACTCCTCCTCGCGATCTGCT----GCCGTTTCT
CTTCTCGATGCCTGGTTGATTTGGTTTGGTTC----------GTTTCTGCAGGCGTGCCAACACCGTTGAGCTGATGAAG
AAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTCCTCGCCCCTCATCCTTCCTGTTGTTAT-----------CCA
TTTGCCATCCAGTG--CCTG-CACATTGCAGTTGCGTAGCAATCAATCCTCGGTTGTTCATAATCAATGCCGTGCCGAGC
AATCCTTGTATGC--------AACCATGTGTGTCCCAGCTGATGCCAGTAGCTTGGGTGTGCCGTGCTGTTGTACTCGTC
AGTGTTTATCGCTCTGCATTACTCTGTATAGTGAAA------ACCCTTTATTTGTCTGGTTGGATGAGAAAATACGAATT
AGCGGTTTTAGGTTTGTGGGGAAAGAATGTTATATGGATCTTTCCTTTTTTTTCGTTGAGTTCAAGCCTGACGAGCGTAA
TATTCTACAACTAATAAGCCATTTATTTTGTGACCTGCCCACTTTCTGCCTAGGATTTTATTTACTAGTCCTTTATATTT
CAAAGGTGTTGAATGTCGAATGCTTTGGCAATTTGCCCGGGTCAGATGAAGTAATATAATAATAATATTGACCAACTTAT
CAGTGTCTTGGATAATCGGC----------TGTAAGCATAGCCATGACTGGAGTCATGCGCACTGCAGCGGA----CATT
GCTTAGATAAGCCACAACAAGT----------------------------------------------------------
--------------------------------------------------------------------------------
----------TAAGTAGAATGGATTTCAAACCAACTAGTGTGATGATC---TTTCTCGGCGCTTACTCGTGGATCTTCTT
TGAAAATCAACATT--TATCT------------------CAGCATGAGATACTTAGGCTGCAGCTGGACCTTTA------
-----------GTTGCTGGCATAGCATTCGAATCAGCGTGATTCAGCATTCGGGACATATCTAAACACTTAAAGAGTTTG
CTCCCTGGTCTTATGAGTTCACAAGAGCTTGCACTATAAATTTTGTGCAACAATGTGTAAAGCCCAATAA--GCTTGCTT
GTAAGATGAGAACAACATATTCTGGTTAGGCTGCTAGGATGACTATGGA-CACTGGAAATAAAGATCTGTATGTGCTGAT
AATTAAATTCCTGGGCAACTGCTAGTTATAGCCCGTCTTATCATCGAACATGGATAA-----------AATGGCCTGATT
TGAGACCGTATGTTTTCC----G---AAAGGTATGCTGCTAGTTTAGTTTGAGTTCTTACTTAACTGTTGCATACCTT--
-GTATGCTTTAAGGCTAAATG-----------------TTCTGATCACTATCGTGATGATTAATCTGACTGGATAGAACT
TTGCA-TGCCTTGAAAGCAAACATCTGACTGATTCTCCTTCTC-CTGTGTTTGCTCGAACTGTTGTTTCTTCAGAAACGT
AGGTGGGATAAAAAGATGAAAGACGAGGAGGCAGCGGCAGCAAAGGCTACTTAG---GGGGACTGGCCTGCTGGTGACTC
AGCCGTTTGTTGTGGCAAACGGGAAGGAACTCATGATATAAAGATATTCTCCATACAATGAAACTAGTCTCCCGTTTT-G
TTTGACAAGGCCAAGCTGTTGATTAAGCATGCTGCTCTTCCTGAATAAGGTCGAAGGGAGTGTAATGTAGGAAGTTCATA
GGCTTATTGG--CTTGCGGTCTTTTTCGCCTTGCTGC---TTTCCAGCTCTAGTGCCACCTGCCACACTTTGGAATGCA-
TTTTTTTCTATAACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAACCTGCATTGAACCCAACTTGTTTGCTGAAA
CAGATCAAAATTATGA--GTGTGTTTGTTAGTTATTCTCATG---TATCATTGGCACTGCAGGGTTTCTTTCGGTGTGAC
AGAAAAGGCCATTCAAGTAAATATAGACAATACTAGAATAATATGAGAACTGGATTATAAACACCATATTACATTTTTCC
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTTGAGATTTAACACCCACGTTTGCATTGCATTGCATCTAGTGCTCGAGATGCTGTCGCACCAT
GTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGGTGAG--CTTACCAACAAATAACAGCACAAC
ACTAA-TATCAAATAGCAAAGGCGATACTCGCCATCTAGTCTATGCTAACCGTTTGCATAAAAA----------------
-------
>chr1A_17
AGCGCC----------------AACTCACCTATCATCTGACACAGCTGCATCAGCGCCGGCCACCTCCACGTCCTGCTTC
TCCGCCTCATCATCAGACTTCTTGTTAGCCGCGGCCTCCGCCTCCATCAGCCTCCTGACCCTCCTCTTCTCCTTCTTCTC
CTTCCTCCTCTCCTCCCTCCGCCGCATCACCTCCGCCCTCTGCGCCAGGGCGGCCTCGTCCACCACCGCCGGCTCCTCAA
GGTCGTCACCACCATCCACTTCCGGGCCCTGCTTCCCCGGCTCTCCGTCAGACTTCTTGCTCGCCGCCGCCTCGGCCTCC
GCCAACTTCCTGGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGCCG
CTCCAGCTCCGCCTTCGACGCAGGGTCCGCCTCG---TCCACGGCCGGCTCCTCCAGGC---------------------
---------------------CCTCCGCCTTCTCCTCCGGGCCCTCCGCCTCCACCGCCGGAGCGGGTGATTTCTCCGGA
GACGCCTTCTTGTTCTTGGCGCTCTTGGTCCGGGGAGGGCGGGGCCCCGGGCGCTTGGGCCGGGGCCGCTTGGAGGCCAC
CAGCCGCACCTTTATCTTCTTCTCCTCCGCGGCAGCCTCCCCCTCGGCGCCCCCGCCGGGGAGGAGCGCGTGGAGCTTCT
GCTTCAGCTTCTTGCGCGCGAGCACCATGGCGGCGGCGGCGGCGGAGTGGAGAGAAAGACAG---------AGAGAGGGG
AGAGGAAGAGACTT--------GACGAGACGGCGAGGTTTATAGTGGGCCGGGCTGATGTGGGCCTTACATTGATCGAAC
GTGCGGTTCGGCCCATCAAGGGACGACCCGGCCCGGCC------CGATCTCTGCTCTTCTCTTACCCTAG----------
--GCCGCCGCCGCAACCCTAGCGAGCGAGCGAGCGAGAGAGCGCGATGGCC-------GGGGGCAAGATGGCGGCGGCGA
CGGCGGCGAAGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGG
GGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGCCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCT
CGCCGGCGAGGACTGGACCTACGACCCGCCCCGCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCG
CCGCCGAGAAGTAATGAGCCT------CCCCCATTTC-------------CCTCCACCCCTCCCAATCTGCGCCATTTCT
CTTCTCGATGCCTGGTTAACTTGGTTTGGTTTGGTTTGGTTTGTTTCCGCAGGCGTGCCAACACCGTTGAGCTGATGAAG
AAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTGCTCGCCTCGC------CCTTCTGTGCTTCATGTTGTCTCAG
TTTGCCATCCGGTGTGCCTG-CGCATTGCAATTGTGTAGCAATCCTTGCCGTGT-----ATAATCAATGCCGTGCTGAGC
AATCCTTGTATAGTTGTATGTAACCATGTGTTTCCTGGCTGGTATCAGTAGCTTGAGTGTGC------------------
--TGTTTCAATCATCAGGGTTTATTTGCTCGACGCAAGTCACA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTAT
CAGTGTTTTAGTTATCACTGCTTAATCTGTTGTAAGCATAGCCATAACTGGAGTCATGCGCACTGCAG---A----CTTT
GCTTAGATATAAGCCACGAGACATTAAGGCCCTGTTCGGCAACCCTCCGCTCCTTCAGCGCGGAGCGGAGCGCACGGAGT
GGCCCTTGAGCGACTCTGAAAATTTGAACTGGATGCTGCTCCGCTCCAGAGCGGAGTTGGAGCGGGGAGAGAGTCCGAAC
AGGCTCTAAGTAAGTACAAGGGATTTCAAGCCAACTAGTGTTATGATC---TTTCTCGGCACTTGCTCGTGGATCTTCCT
TGAAAATTTACACTTAAGCCCCATTTCTCCCAAATGCAGCAGCATGAGATACTTAGGCTGCAGCTGGGCTTTCA------
-----------GTTGCTGGCATACCATTCAAATCAGCTTGATTCATCATTGGAGGCTTAGCTAAACTTCTAAAGAGTTTG
CTCCCTGGTCTTATGAGTTCACAAGTGTTTGCACTATACATTTTGTGCAACAATGTGTAAAGCCCAGTAAGCGCTTGCCT
GCAAGATGAG-ACAACCTATTCTGGTCAG-CTGCTAGAATGGCTATGGAGCACTGGAATTAAATATC----TGTGCTGGT
AATTAAATTTCTTGATAATTGCTAGTTATAGTTCATCTTATCATTGAACATG-----GATCAATTATTAAGGGCTCGATT
TGGGAGAAATATATTTTCTTGTG---AAAACTATGCTGCCAGTTTAGTT-GAGTTCTTACTGAAGACA-GCATACCTT--
-GTA--CTTTAAGGCTACATGTTGTGCACTTGTGATCATTGTGTTCACCATGGCAATGATTAATGTGATTGCGTACAACT
TCTCTGTGCCTTGAAAGGAAGCATCTAACTGGTTCTTCTTTTGTCTGTGTTTGCACAAATTGTTATTTCTGCAGAAACGC
AGATGGGATAAAAAGATGAAAGAGGAGGAGGCAGCAGCAGCAAAGGCTACTTAG---GG--ACTGGCCTGCTGGTGATTC
TACCGTTTGTTGTGGCAATCGGGAAGGAACTCTTAATATAAACATATTCTGCGCACAATGAAACTAGTCTCCCTTTTTTG
TTTGATGAGGCCAAGCTGTTGATTAAGTATGCTGCTCTTCCTGAATAAGGTCGAAGGGAGTGTAATGTAGGAATTTCATA
GGCTTATTGGCTTTTGCAGTCTTTTTCGCCTTGCTGC---TTTCCAACTCTAGTGCCACCTGCCACACTTTGTAATGCA-
TTTTTTT-TATAACATCGGTCATATAATCAGGATTCTAGCCTGGTCCCAACCTGCATTGAACCCAACTTGTTTGCTGAAA
CAGATCAAAATTATGA--GTGTG--TGTTAGTTATTCTCATG---TATCATTGGCACTGCAGGGTTTTTTTTTGTGTGGC
AGAAAGGGTCATTCAAGTAAATATATGCCA---TAGTATAATATGAGAACTGGATTATAGACACCATATAGAATTTTTCC
TTTTTTCTTTTGAGATCTGGGAGGAAATGTGCCAGTATATCTAGGCACCATAGAATAGAGTGATGTATAGGGCATATTTA
AAACTATTATTGCACACAAGAATGACTCCTCGGTTCTTTATGTTGCTGCACTGGGAGT----------------------
----------------------TGTTGCAGCTGCTAATAATAGACATAGCCTGGGTATGTGTCATATACACACACATTTG
GGTTGTGTGGCAGGAAAATCATCAGGCGTCCACAGTGGTCGCACCCGGTTGCATGCATCAAGTCATGAGCCAGGAGGCCC
CTCTCAGCTAGGCCCGCTTGAGATTTAACACCCACGATTGCGTTGCATTGCATCTAGTGCTCAAGATTCTATTGCACCAT
GTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGGTGAG--CTTACCAACAAATAACAGCACAAC
ACTTC-GATCAAATAGCAA-GGCGTTACTCGCCATCTTGTCCAAGCTAACCGTTTGCATAAAAAACACTTGCT-------
-------
>SNPs
---S--SSSS---S---------------------------------SS-S---------S-S-----------------
-----------S--S----------------------------------S------------------------------
-------------------------SS----------------------------------------S-------S----
--------------------------S--S---SS-----------------------S-----------SS--------
--------------------------------------------------------------------------------
-------------------S--------------SSS---------------------S---------------------
---SSSSSSSSSSSSSSS---------S-----S----S-----------------------------------------
-----------------------S-----------------S--------------------------------------
---------------------------S-----------------------------------S--S-------------
---------------------------------------------S-SS---SSSSSSS---------------------
-------------------------------------------S---------------S-------S------------
-S----------------S------S---------S--------S--------------------------SSSSSSSSS
S------------------------------------------SSSS--SS-----------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S------------------------------S---------------S-SSS-SSS
--------------SS----------------------------------------------------------------
----------------------------------------------------------S---------S--S---SS---
------------------SSS-----------SS-S-SSS----S-S-SS------------------------------
--------------------------------------------------------------------------------
---------S----S-S--SSS--------SS------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-S-----S-------S---------SSS-S------S-------S-----------S-------------SSSS-S--
--S-----S--S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-S--------------------S----SS-----SSSS-S---S--S--S-----S----SSS---S
S-SSSSSS-SSSS-SS------------------------S----S------SS---------SSSS-SSSS-SSSSSSS
SSSSSSSSSSS--S------------------S---SS-S----------SS------S-----------------S---
--S---------S---S---------------S--S--SS-----------S--S--S----------------------
----------SS------------------------------SS-------S----------------------------
-----------------S------S--S--------S-SS-----S----------S---S-----S----------S--
--S--S-------S---S--S-SSSS--------------------S--------------S---S-----S--SSSSSS
S--------S-----------S---------------------------S---------------SSSS-----------
----------------------------------------------------S---------------------------
-----------S--------------------S--------------------SSSS--------S--------------
-----------------------------------------S--------------------------------------
---S-----S-----S----------S-------------------------------S-----------S-S-------
--S-S----------------------S-S--SSSSSSSS-----------SS----S---------------------S
---------S-S--------------------------------------------------------------------
--S-------------SS-----------------------SSSS---------------------------------SS
SSSSS-S-S--SSS--SSSSS----------------------S----------S-----S--S--------------SS
S------------S------------------------------S-----------------------------------
-----------------------SSSS-S--SSSSS-SSSSSSSSS--SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------------S-----------------------------
S---------------SSSSS--SSS-SSS--SSSS-S-SSS-S------------------------------------
----SS-------S-------------------S--------------S-------------------------------
------------------------S-----------------------------SS----S-------------------
----SS-----------------------------------------------SSSS--------S-------SSSSSSS
SSSSSSS
>forward_299
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GCTCTCCGTCGGACTTCTTC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_1352
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TCTCCTCGA
TCGATGCCTGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_519
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CTCCTCCGACTTCTTCTCCC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------
>reverse_2373
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------GGAGGCTGCAGTATAAGGCC--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>forward_1359
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CATCTGCTCTGCTCTCCTCG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_3786
--------------------------------------------------------------------------------
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-------------------------CCACACATCAAGTTGCGAGC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
