AutoCloner

Multiple sequence alignment - TraesCS1B01G049800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G049800	chr1B	100.000	2752	0	0	1	2752	29493921	29491170	0.000000e+00	5083.0
1	TraesCS1B01G049800	chr1B	87.081	1432	135	18	1331	2752	10415902	10417293	0.000000e+00	1574.0
2	TraesCS1B01G049800	chr1B	88.675	989	79	12	64	1028	10783623	10782644	0.000000e+00	1175.0
3	TraesCS1B01G049800	chr1B	91.687	818	56	7	1936	2752	29221219	29222025	0.000000e+00	1123.0
4	TraesCS1B01G049800	chr1B	89.128	929	60	12	1028	1938	29207806	29208711	0.000000e+00	1118.0
5	TraesCS1B01G049800	chr1B	87.120	986	85	16	66	1028	29206805	29207771	0.000000e+00	1079.0
6	TraesCS1B01G049800	chr1B	91.633	753	36	11	1028	1758	10782615	10781868	0.000000e+00	1016.0
7	TraesCS1B01G049800	chr1B	82.680	791	92	21	1756	2541	10763954	10763204	0.000000e+00	660.0
8	TraesCS1B01G049800	chr1B	86.879	503	31	11	768	1239	10415340	10415838	5.220000e-147	531.0
9	TraesCS1B01G049800	chr1B	79.902	612	99	22	64	659	567765086	567765689	7.040000e-116	427.0
10	TraesCS1B01G049800	chr1D	88.780	1426	120	19	1341	2752	8260286	8261685	0.000000e+00	1711.0
11	TraesCS1B01G049800	chr1D	79.967	609	102	18	64	658	118192069	118192671	5.440000e-117	431.0
12	TraesCS1B01G049800	chr1D	91.457	199	17	0	1041	1239	8260019	8260217	9.710000e-70	274.0
13	TraesCS1B01G049800	chr6B	84.893	609	74	12	64	658	124351929	124351325	1.410000e-167	599.0
14	TraesCS1B01G049800	chr6B	81.803	610	89	21	64	658	198407996	198408598	2.460000e-135	492.0
15	TraesCS1B01G049800	chr6B	91.379	58	4	1	1	58	193537801	193537745	8.170000e-11	78.7
16	TraesCS1B01G049800	chr6B	92.308	52	4	0	2115	2166	426484555	426484504	1.060000e-09	75.0
17	TraesCS1B01G049800	chr6B	90.385	52	5	0	2115	2166	431236622	431236571	4.920000e-08	69.4
18	TraesCS1B01G049800	chr3D	83.361	613	87	13	57	658	327380982	327381590	1.110000e-153	553.0
19	TraesCS1B01G049800	chr3D	86.408	515	48	16	61	559	138854983	138855491	6.700000e-151	544.0
20	TraesCS1B01G049800	chr3D	88.235	68	6	2	1	67	47327164	47327230	2.270000e-11	80.5
21	TraesCS1B01G049800	chr3D	92.727	55	1	2	15	67	585623433	585623380	2.940000e-10	76.8
22	TraesCS1B01G049800	chr3A	82.871	613	90	13	57	658	440913336	440913944	1.120000e-148	536.0
23	TraesCS1B01G049800	chr3A	93.103	58	4	0	1	58	168138419	168138476	4.880000e-13	86.1
24	TraesCS1B01G049800	chr4B	82.587	603	82	15	57	650	456906828	456907416	6.800000e-141	510.0
25	TraesCS1B01G049800	chr5A	80.099	608	98	19	64	659	294521397	294520801	5.440000e-117	431.0
26	TraesCS1B01G049800	chr7B	83.603	433	59	11	1353	1782	167575596	167575173	1.990000e-106	396.0
27	TraesCS1B01G049800	chr5D	79.024	615	100	25	65	658	75378152	75377546	7.140000e-106	394.0
28	TraesCS1B01G049800	chr7D	82.989	435	62	11	1350	1781	203948129	203947704	1.550000e-102	383.0
29	TraesCS1B01G049800	chr7A	82.989	435	62	11	1350	1781	215546863	215546438	1.550000e-102	383.0
30	TraesCS1B01G049800	chr3B	77.306	683	112	31	1	658	444060822	444060158	2.010000e-96	363.0
31	TraesCS1B01G049800	chr4A	81.746	252	34	9	124	367	3440662	3440909	1.670000e-47	200.0
32	TraesCS1B01G049800	chr2A	89.394	66	5	1	1	64	365613744	365613809	6.320000e-12	82.4
33	TraesCS1B01G049800	chrUn	90.164	61	3	2	9	67	333808283	333808342	2.940000e-10	76.8
34	TraesCS1B01G049800	chr5B	94.118	51	2	1	15	64	307127998	307127948	2.940000e-10	76.8
35	TraesCS1B01G049800	chr2B	85.333	75	6	4	2129	2202	164904242	164904172	3.800000e-09	73.1
36	TraesCS1B01G049800	chr2D	90.476	42	3	1	909	949	32061187	32061146	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G049800	chr1B	29491170	29493921	2751	True	5083.0	5083	100.0000	1	2752	1	chr1B.!!$R2	2751
1	TraesCS1B01G049800	chr1B	29221219	29222025	806	False	1123.0	1123	91.6870	1936	2752	1	chr1B.!!$F1	816
2	TraesCS1B01G049800	chr1B	29206805	29208711	1906	False	1098.5	1118	88.1240	66	1938	2	chr1B.!!$F4	1872
3	TraesCS1B01G049800	chr1B	10781868	10783623	1755	True	1095.5	1175	90.1540	64	1758	2	chr1B.!!$R3	1694
4	TraesCS1B01G049800	chr1B	10415340	10417293	1953	False	1052.5	1574	86.9800	768	2752	2	chr1B.!!$F3	1984
5	TraesCS1B01G049800	chr1B	10763204	10763954	750	True	660.0	660	82.6800	1756	2541	1	chr1B.!!$R1	785
6	TraesCS1B01G049800	chr1B	567765086	567765689	603	False	427.0	427	79.9020	64	659	1	chr1B.!!$F2	595
7	TraesCS1B01G049800	chr1D	8260019	8261685	1666	False	992.5	1711	90.1185	1041	2752	2	chr1D.!!$F2	1711
8	TraesCS1B01G049800	chr1D	118192069	118192671	602	False	431.0	431	79.9670	64	658	1	chr1D.!!$F1	594
9	TraesCS1B01G049800	chr6B	124351325	124351929	604	True	599.0	599	84.8930	64	658	1	chr6B.!!$R1	594
10	TraesCS1B01G049800	chr6B	198407996	198408598	602	False	492.0	492	81.8030	64	658	1	chr6B.!!$F1	594
11	TraesCS1B01G049800	chr3D	327380982	327381590	608	False	553.0	553	83.3610	57	658	1	chr3D.!!$F3	601
12	TraesCS1B01G049800	chr3D	138854983	138855491	508	False	544.0	544	86.4080	61	559	1	chr3D.!!$F2	498
13	TraesCS1B01G049800	chr3A	440913336	440913944	608	False	536.0	536	82.8710	57	658	1	chr3A.!!$F2	601
14	TraesCS1B01G049800	chr4B	456906828	456907416	588	False	510.0	510	82.5870	57	650	1	chr4B.!!$F1	593
15	TraesCS1B01G049800	chr5A	294520801	294521397	596	True	431.0	431	80.0990	64	659	1	chr5A.!!$R1	595
16	TraesCS1B01G049800	chr5D	75377546	75378152	606	True	394.0	394	79.0240	65	658	1	chr5D.!!$R1	593
17	TraesCS1B01G049800	chr3B	444060158	444060822	664	True	363.0	363	77.3060	1	658	1	chr3B.!!$R1	657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
906	1004	0.037697	CGGTTCGACCATCCTTGTGA	60.038	55.0	5.15	0.0	38.47	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1980	2182	0.250209	GGCGATGGAGCAGATCATGT	60.25	55.0	0.0	0.0	39.27	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	2.223782	TGTGCTCAATTTTGTGGTGCTC	60.224	45.455	0.00	0.00	0.00	4.26
28	29	4.060205	GCTCAATTTTGTGGTGCTCAATT	58.940	39.130	0.00	0.00	0.00	2.32
62	103	4.945246	AGGGAACATGACACGTATGTATC	58.055	43.478	0.00	4.06	39.95	2.24
98	139	8.959548	TGTTTACATCATGTCATCTTGCTTAAT	58.040	29.630	0.00	0.00	0.00	1.40
165	207	4.938080	AGATAGCAGTCGATGTTTGTAGG	58.062	43.478	0.00	0.00	0.00	3.18
193	239	0.684479	TAGATGCAGGCAGGAGTCGT	60.684	55.000	0.00	0.00	0.00	4.34
258	308	8.292448	GCCTTGAATATCGTCATGATTATTTGT	58.708	33.333	0.00	0.00	38.57	2.83
300	351	9.740239	CCAACAATAATTTCTCTAACCATCATG	57.260	33.333	0.00	0.00	0.00	3.07
544	637	0.373716	GCTACATAGTGTTGCGTGGC	59.626	55.000	1.19	0.00	39.07	5.01
548	641	1.270839	ACATAGTGTTGCGTGGCTCTT	60.271	47.619	0.00	0.00	0.00	2.85
553	646	0.391228	TGTTGCGTGGCTCTTCTACA	59.609	50.000	0.00	0.00	0.00	2.74
559	652	2.100916	GCGTGGCTCTTCTACAGGATTA	59.899	50.000	0.00	0.00	0.00	1.75
613	708	8.792830	ACTTATTTGTACTGTACTGCATCATT	57.207	30.769	17.98	0.00	0.00	2.57
627	722	5.077134	TGCATCATTCTCTCTTCTTCGAA	57.923	39.130	0.00	0.00	0.00	3.71
735	830	9.902196	CTAAACTTTTACCCGTCAATGTAATTT	57.098	29.630	0.00	0.00	31.22	1.82
795	890	6.294453	CCGCAATTAATTTGAGGCCACATATA	60.294	38.462	5.01	0.00	46.36	0.86
828	924	3.644884	AGTAGTGCCTATCGTACATGC	57.355	47.619	0.00	0.00	0.00	4.06
834	930	4.332819	AGTGCCTATCGTACATGCTTTTTC	59.667	41.667	0.00	0.00	0.00	2.29
906	1004	0.037697	CGGTTCGACCATCCTTGTGA	60.038	55.000	5.15	0.00	38.47	3.58
992	1097	6.183360	CCAACAACCACTATAAAACCAAACCT	60.183	38.462	0.00	0.00	0.00	3.50
1209	1374	2.202743	GAGTGCATGCGCGACCTA	60.203	61.111	24.54	0.00	42.97	3.08
1233	1398	1.227823	CCTCACCGACAAGCACCAA	60.228	57.895	0.00	0.00	0.00	3.67
1322	1501	4.843220	ACGGAGGGAGTACATAATTACG	57.157	45.455	0.00	0.00	0.00	3.18
1325	1519	4.612259	CGGAGGGAGTACATAATTACGTCG	60.612	50.000	0.00	0.00	0.00	5.12
1334	1528	7.715657	AGTACATAATTACGTCGGTCCAATTA	58.284	34.615	0.00	0.00	0.00	1.40
1379	1578	0.684535	TCATGCAGTCAACTCCGGAA	59.315	50.000	5.23	0.00	0.00	4.30
1709	1908	2.674727	TACGGGCGGTACCACGAA	60.675	61.111	22.53	0.00	42.05	3.85
1751	1950	2.279517	GGCGGCACCATCGTCTAG	60.280	66.667	3.07	0.00	38.86	2.43
1871	2070	2.431454	GACTTCCTCAAGGGCTTCAAG	58.569	52.381	0.00	0.00	33.37	3.02
1874	2073	1.136329	TCCTCAAGGGCTTCAAGGCT	61.136	55.000	11.34	0.00	41.09	4.58
1883	2082	1.079266	CTTCAAGGCTGAGCTCGCT	60.079	57.895	23.23	11.44	31.69	4.93
1901	2100	2.587194	GCTGACCAGCGCATCGAT	60.587	61.111	11.47	0.00	45.29	3.59
1940	2139	1.608717	GAGACGGCCTCACCATCTGT	61.609	60.000	0.00	0.00	42.36	3.41
1980	2182	4.720902	CATGACCCTGCCGGCACA	62.721	66.667	29.03	22.97	33.26	4.57
1983	2185	4.722700	GACCCTGCCGGCACACAT	62.723	66.667	29.03	11.66	33.26	3.21
2001	2203	0.471191	ATGATCTGCTCCATCGCCAA	59.529	50.000	0.00	0.00	0.00	4.52
2003	2205	0.462581	GATCTGCTCCATCGCCAACA	60.463	55.000	0.00	0.00	0.00	3.33
2011	2213	0.680921	CCATCGCCAACATCCAACCT	60.681	55.000	0.00	0.00	0.00	3.50
2013	2215	0.394352	ATCGCCAACATCCAACCTCC	60.394	55.000	0.00	0.00	0.00	4.30
2104	2311	7.042950	CCATGCTTTGTGATTTCATCCAATAA	58.957	34.615	0.00	0.00	0.00	1.40
2105	2312	7.713507	CCATGCTTTGTGATTTCATCCAATAAT	59.286	33.333	0.00	0.00	0.00	1.28
2106	2313	9.104965	CATGCTTTGTGATTTCATCCAATAATT	57.895	29.630	0.00	0.00	0.00	1.40
2239	2446	4.626172	GGAGAGAGTATTTGTTTCGTGGAC	59.374	45.833	0.00	0.00	0.00	4.02
2340	2557	7.628501	TGTATATGAGGTAGACTCTAGACCA	57.371	40.000	1.56	0.00	46.72	4.02
2371	2588	0.316204	GCAGCTGCAACCAGTTTGAT	59.684	50.000	33.36	0.00	41.26	2.57
2392	2609	3.795688	AGCATGAAGTTTCCAGGAGAA	57.204	42.857	0.00	0.00	0.00	2.87
2393	2610	4.313020	AGCATGAAGTTTCCAGGAGAAT	57.687	40.909	0.00	0.00	33.44	2.40
2448	2665	7.950512	ACAACTTATTTTCATGATGTGTCCAA	58.049	30.769	0.00	0.00	0.00	3.53
2509	2726	1.280133	CCACCTGGTCATGTCACTCAT	59.720	52.381	0.00	0.00	37.22	2.90
2513	2730	3.068732	ACCTGGTCATGTCACTCATATCG	59.931	47.826	0.00	0.00	34.67	2.92
2545	2762	8.475331	TTCTAGCGGTTTTGTCTAAATCTTAG	57.525	34.615	0.00	0.00	0.00	2.18
2551	2768	7.534239	GCGGTTTTGTCTAAATCTTAGTTTCTG	59.466	37.037	0.00	0.00	0.00	3.02
2581	2798	6.014499	ACCGAGGAGAAAGTCAAAGATTTAGA	60.014	38.462	0.00	0.00	0.00	2.10
2582	2799	6.874134	CCGAGGAGAAAGTCAAAGATTTAGAA	59.126	38.462	0.00	0.00	0.00	2.10
2611	2828	2.706190	GCTCCTCTAGGCCCTTTTCATA	59.294	50.000	0.00	0.00	34.44	2.15
2625	2842	9.297037	GGCCCTTTTCATAGCTAGAATTATTAA	57.703	33.333	0.00	0.00	0.00	1.40
2737	2954	9.416284	AGTACCCAACAAGAGAAATTTTAAGAA	57.584	29.630	0.00	0.00	0.00	2.52
2744	2961	8.112016	ACAAGAGAAATTTTAAGAAGCTACCC	57.888	34.615	0.00	0.00	0.00	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	2.030371	TGAGCACCACAAAATTGAGCA	58.970	42.857	0.00	0.00	0.00	4.26
7	8	4.687483	GGAATTGAGCACCACAAAATTGAG	59.313	41.667	0.00	0.00	0.00	3.02
13	14	2.361757	CACTGGAATTGAGCACCACAAA	59.638	45.455	0.00	0.00	0.00	2.83
17	18	1.142667	TGTCACTGGAATTGAGCACCA	59.857	47.619	0.00	0.00	0.00	4.17
24	25	3.423539	TCCCTTCTGTCACTGGAATTG	57.576	47.619	0.00	0.00	0.00	2.32
28	29	1.801242	TGTTCCCTTCTGTCACTGGA	58.199	50.000	0.00	0.00	0.00	3.86
162	204	6.155221	CCTGCCTGCATCTAATACTATTCCTA	59.845	42.308	0.00	0.00	0.00	2.94
165	207	6.042638	TCCTGCCTGCATCTAATACTATTC	57.957	41.667	0.00	0.00	0.00	1.75
193	239	4.202060	GCATCACATCCGAGAGAAGTAGAA	60.202	45.833	0.00	0.00	0.00	2.10
287	338	7.307042	CGAGAAAATAGCACATGATGGTTAGAG	60.307	40.741	0.00	0.00	40.36	2.43
300	351	3.553917	GGCTTCTCTCGAGAAAATAGCAC	59.446	47.826	25.77	17.14	45.75	4.40
436	509	7.148373	TGGCGGTTGAATTGTAAGTTTATAGAC	60.148	37.037	0.00	0.00	0.00	2.59
544	637	8.487028	ACCAAGGTTATTAATCCTGTAGAAGAG	58.513	37.037	0.00	0.00	33.97	2.85
548	641	8.388656	AGAACCAAGGTTATTAATCCTGTAGA	57.611	34.615	4.14	0.00	38.60	2.59
553	646	9.462606	CAGTTAAGAACCAAGGTTATTAATCCT	57.537	33.333	25.62	18.86	46.37	3.24
559	652	8.990163	TTTCTCAGTTAAGAACCAAGGTTATT	57.010	30.769	15.29	15.29	41.55	1.40
594	689	6.153510	AGAGAGAATGATGCAGTACAGTACAA	59.846	38.462	13.37	0.00	0.00	2.41
627	722	2.633967	TGTGAGCTGCATTGGGATTTTT	59.366	40.909	1.02	0.00	0.00	1.94
735	830	2.029470	CCCGCCACAGCTATTTTGAAAA	60.029	45.455	0.00	0.00	36.60	2.29
776	871	7.049799	GGCTTTATATGTGGCCTCAAATTAA	57.950	36.000	12.26	7.36	41.20	1.40
795	890	3.841255	AGGCACTACTTAGAGAAGGCTTT	59.159	43.478	0.00	0.00	36.02	3.51
828	924	3.297979	GCATTGCACACGATACGAAAAAG	59.702	43.478	3.15	0.00	0.00	2.27
834	930	1.351707	GGGCATTGCACACGATACG	59.648	57.895	11.39	0.00	0.00	3.06
880	978	1.590147	ATGGTCGAACCGTCACCTC	59.410	57.895	0.00	0.00	42.58	3.85
906	1004	4.393062	CGCACACAGTTCAAAATCCTATCT	59.607	41.667	0.00	0.00	0.00	1.98
1098	1260	0.796870	CGTAGCTCGCATTGACGTCA	60.797	55.000	15.76	15.76	0.00	4.35
1209	1374	2.915659	TTGTCGGTGAGGAGGCGT	60.916	61.111	0.00	0.00	0.00	5.68
1285	1464	4.632688	CCCTCCGTAAACAAATATGAACGT	59.367	41.667	0.00	0.00	32.72	3.99
1287	1466	5.878669	ACTCCCTCCGTAAACAAATATGAAC	59.121	40.000	0.00	0.00	0.00	3.18
1334	1528	2.575532	CTGGATGCACCGACCAATATT	58.424	47.619	0.00	0.00	42.61	1.28
1488	1687	2.113139	CACCACCTTGGCGTCCTT	59.887	61.111	0.00	0.00	42.67	3.36
1511	1710	1.038280	AGTCTTTCCGGTTGACGTCT	58.962	50.000	17.92	0.00	42.24	4.18
1658	1857	1.484227	CGTCCACAAACGCGAAGTCA	61.484	55.000	15.93	0.00	35.64	3.41
1751	1950	2.358737	CCCCAGAGCGTGTTGTCC	60.359	66.667	0.00	0.00	0.00	4.02
1799	1998	3.090219	GCCGGGCAGGACGTCTAAT	62.090	63.158	15.62	0.00	45.00	1.73
1843	2042	1.472376	CCTTGAGGAAGTCGGAGATGC	60.472	57.143	0.00	0.00	36.42	3.91
1896	2095	0.319383	GCGATCTGGCAGACATCGAT	60.319	55.000	33.08	14.20	41.61	3.59
1901	2100	3.381983	ACGGCGATCTGGCAGACA	61.382	61.111	21.37	0.00	45.16	3.41
1940	2139	3.963687	TAGTCAGACGAGGCGGCGA	62.964	63.158	12.98	0.00	41.28	5.54
1978	2180	1.809271	GCGATGGAGCAGATCATGTGT	60.809	52.381	0.00	0.00	37.05	3.72
1980	2182	0.250209	GGCGATGGAGCAGATCATGT	60.250	55.000	0.00	0.00	39.27	3.21
1983	2185	0.462581	GTTGGCGATGGAGCAGATCA	60.463	55.000	0.00	0.00	39.27	2.92
2011	2213	1.681327	GGAGTGGCTAGTGTCCGGA	60.681	63.158	0.00	0.00	0.00	5.14
2013	2215	0.739561	GTAGGAGTGGCTAGTGTCCG	59.260	60.000	0.00	0.00	33.99	4.79
2059	2261	4.314961	TGGAAAGCACATAGTACACACAG	58.685	43.478	0.00	0.00	0.00	3.66
2205	2412	6.386927	ACAAATACTCTCTCCATCCCATAACA	59.613	38.462	0.00	0.00	0.00	2.41
2206	2413	6.831976	ACAAATACTCTCTCCATCCCATAAC	58.168	40.000	0.00	0.00	0.00	1.89
2292	2507	8.564574	ACAAATATCACGTTTGACTAACAACAT	58.435	29.630	4.02	0.00	38.51	2.71
2321	2536	6.159046	ACTTACTGGTCTAGAGTCTACCTCAT	59.841	42.308	12.38	2.38	43.12	2.90
2340	2557	1.446907	GCAGCTGCACATCACTTACT	58.553	50.000	33.36	0.00	41.59	2.24
2368	2585	4.471025	TCTCCTGGAAACTTCATGCTATCA	59.529	41.667	0.00	0.00	0.00	2.15
2371	2588	4.908601	TTCTCCTGGAAACTTCATGCTA	57.091	40.909	0.00	0.00	0.00	3.49
2392	2609	2.785857	CCCCTCCTTTGACATCCCTAAT	59.214	50.000	0.00	0.00	0.00	1.73
2393	2610	2.205342	CCCCTCCTTTGACATCCCTAA	58.795	52.381	0.00	0.00	0.00	2.69
2448	2665	7.731235	GGATATAGGTTTTTCTCCTCCTCTAGT	59.269	40.741	0.00	0.00	36.60	2.57
2509	2726	6.537301	ACAAAACCGCTAGAATTTCATCGATA	59.463	34.615	0.00	0.00	0.00	2.92
2513	2730	6.183309	AGACAAAACCGCTAGAATTTCATC	57.817	37.500	0.00	0.00	0.00	2.92
2545	2762	5.048154	ACTTTCTCCTCGGTACTACAGAAAC	60.048	44.000	0.00	0.00	0.00	2.78
2551	2768	5.182760	TCTTTGACTTTCTCCTCGGTACTAC	59.817	44.000	0.00	0.00	0.00	2.73
2582	2799	2.092158	GGGCCTAGAGGAGCTCATTTTT	60.092	50.000	17.19	1.10	37.39	1.94
2611	2828	7.569240	ACTTCTGGCAGTTAATAATTCTAGCT	58.431	34.615	15.27	0.00	0.00	3.32
2625	2842	2.183679	AGCTAGCTAACTTCTGGCAGT	58.816	47.619	17.69	0.00	40.02	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.