Multiple sequence alignment - TraesCS1B01G047500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G047500 chr1B 100.000 1977 0 0 381 2357 27321190 27323166 0.000000e+00 3651.0
1 TraesCS1B01G047500 chr1B 100.000 176 0 0 1 176 27320810 27320985 2.260000e-85 326.0
2 TraesCS1B01G047500 chr1B 96.875 32 1 0 418 449 640553555 640553586 1.000000e-03 54.7
3 TraesCS1B01G047500 chr1A 91.671 1825 97 16 511 2308 20842029 20843825 0.000000e+00 2477.0
4 TraesCS1B01G047500 chr1A 97.561 41 1 0 2317 2357 444561536 444561576 1.170000e-08 71.3
5 TraesCS1B01G047500 chrUn 90.458 1048 69 12 1286 2322 10303166 10302139 0.000000e+00 1352.0
6 TraesCS1B01G047500 chrUn 90.136 953 76 10 381 1317 10304058 10303108 0.000000e+00 1223.0
7 TraesCS1B01G047500 chrUn 93.750 176 11 0 1 176 10304242 10304067 4.990000e-67 265.0
8 TraesCS1B01G047500 chrUn 95.556 45 2 0 1115 1159 10303280 10303236 3.250000e-09 73.1
9 TraesCS1B01G047500 chr5B 97.727 44 1 0 2314 2357 648946216 648946259 2.510000e-10 76.8
10 TraesCS1B01G047500 chr2B 97.619 42 1 0 2316 2357 485513628 485513587 3.250000e-09 73.1
11 TraesCS1B01G047500 chr5A 97.561 41 1 0 2317 2357 84873459 84873419 1.170000e-08 71.3
12 TraesCS1B01G047500 chr2D 100.000 38 0 0 2320 2357 617177388 617177351 1.170000e-08 71.3
13 TraesCS1B01G047500 chr2D 97.500 40 1 0 2318 2357 246053432 246053393 4.200000e-08 69.4
14 TraesCS1B01G047500 chr7A 97.500 40 1 0 2318 2357 591033253 591033292 4.200000e-08 69.4
15 TraesCS1B01G047500 chr5D 97.500 40 1 0 2318 2357 173568336 173568375 4.200000e-08 69.4
16 TraesCS1B01G047500 chr5D 97.500 40 1 0 2318 2357 188067786 188067747 4.200000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G047500 chr1B 27320810 27323166 2356 False 1988.500 3651 100.000 1 2357 2 chr1B.!!$F2 2356
1 TraesCS1B01G047500 chr1A 20842029 20843825 1796 False 2477.000 2477 91.671 511 2308 1 chr1A.!!$F1 1797
2 TraesCS1B01G047500 chrUn 10302139 10304242 2103 True 728.275 1352 92.475 1 2322 4 chrUn.!!$R1 2321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 479 0.667792 ACGCTTCTCTCTTTGACGGC 60.668 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2116 0.179001 AACCACCCTGCCACAGTTAC 60.179 55.0 0.0 0.0 0.0 2.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.141665 TGACGATGGCACGAGATGG 59.858 57.895 14.63 0.00 37.03 3.51
37 38 2.969238 CGATGGCACGAGATGGGC 60.969 66.667 0.00 0.00 35.09 5.36
85 86 1.003003 AGTCCAAGCTTTCTCTCCAGC 59.997 52.381 0.00 0.00 36.16 4.85
89 90 3.521126 TCCAAGCTTTCTCTCCAGCTATT 59.479 43.478 0.00 0.00 46.01 1.73
100 101 5.601729 TCTCTCCAGCTATTCTCATCAACAT 59.398 40.000 0.00 0.00 0.00 2.71
119 120 3.498397 ACATAGTCAAAGTTGCTTGGTCG 59.502 43.478 0.00 0.00 0.00 4.79
135 136 4.657824 CGTCGTCGGGTGTGGCTT 62.658 66.667 0.00 0.00 0.00 4.35
151 152 1.211949 GGCTTACTGGTTGGCATAGGA 59.788 52.381 0.00 0.00 0.00 2.94
168 169 1.174783 GGACGTCTCAGGTCTTAGCA 58.825 55.000 16.46 0.00 33.80 3.49
403 404 1.153823 GTGGTCGTCGATGGTGGAG 60.154 63.158 4.48 0.00 0.00 3.86
404 405 1.605451 TGGTCGTCGATGGTGGAGT 60.605 57.895 4.48 0.00 0.00 3.85
440 441 1.025041 CGGAGGAGTGATGACGATGA 58.975 55.000 0.00 0.00 0.00 2.92
465 469 1.205893 GGATGTCCTCAACGCTTCTCT 59.794 52.381 0.00 0.00 0.00 3.10
473 477 2.394708 TCAACGCTTCTCTCTTTGACG 58.605 47.619 0.00 0.00 0.00 4.35
475 479 0.667792 ACGCTTCTCTCTTTGACGGC 60.668 55.000 0.00 0.00 0.00 5.68
486 490 1.126113 CTTTGACGGCGTGTGTGTATC 59.874 52.381 21.19 0.00 0.00 2.24
494 498 2.139917 GCGTGTGTGTATCTTTGTGGA 58.860 47.619 0.00 0.00 0.00 4.02
498 502 5.407502 CGTGTGTGTATCTTTGTGGATAGA 58.592 41.667 0.00 0.00 0.00 1.98
499 503 6.042777 CGTGTGTGTATCTTTGTGGATAGAT 58.957 40.000 0.00 0.00 35.41 1.98
526 530 2.152016 GGTGAGTACCTTGTCTTTGCC 58.848 52.381 0.00 0.00 43.97 4.52
527 531 2.486548 GGTGAGTACCTTGTCTTTGCCA 60.487 50.000 0.00 0.00 43.97 4.92
536 540 1.401761 TGTCTTTGCCAGCATGTTGT 58.598 45.000 8.84 0.00 0.00 3.32
680 698 7.591057 ACTTAACAATGTCATCAATTGAACACG 59.409 33.333 13.09 10.34 35.70 4.49
841 861 6.998673 ACATAAAGCCCCAATAATAGACACTC 59.001 38.462 0.00 0.00 0.00 3.51
848 868 6.467677 CCCCAATAATAGACACTCACCTATG 58.532 44.000 0.00 0.00 0.00 2.23
918 938 6.536941 GTGTTATCTCTTCTCCATTTCTGGAC 59.463 42.308 0.00 0.00 46.95 4.02
1077 1097 2.552315 TGCAGCGACGATATCATCTACA 59.448 45.455 0.00 0.00 0.00 2.74
1115 1135 1.745890 CGGACGATGCCCCTAATGA 59.254 57.895 0.00 0.00 0.00 2.57
1176 1196 1.070134 CCCACCGACACTTCTTCTGAA 59.930 52.381 0.00 0.00 0.00 3.02
1270 1290 3.157252 GCTCTGATGGCCTCCCGA 61.157 66.667 3.32 0.00 0.00 5.14
1271 1291 2.818132 CTCTGATGGCCTCCCGAC 59.182 66.667 3.32 0.00 0.00 4.79
1272 1292 1.760086 CTCTGATGGCCTCCCGACT 60.760 63.158 3.32 0.00 0.00 4.18
1273 1293 2.025767 CTCTGATGGCCTCCCGACTG 62.026 65.000 3.32 0.00 0.00 3.51
1274 1294 2.038813 TGATGGCCTCCCGACTGA 59.961 61.111 3.32 0.00 0.00 3.41
1275 1295 2.303549 CTGATGGCCTCCCGACTGAC 62.304 65.000 3.32 0.00 0.00 3.51
1276 1296 3.083997 ATGGCCTCCCGACTGACC 61.084 66.667 3.32 0.00 0.00 4.02
1279 1299 3.319198 GCCTCCCGACTGACCCAA 61.319 66.667 0.00 0.00 0.00 4.12
1280 1300 2.663196 CCTCCCGACTGACCCAAC 59.337 66.667 0.00 0.00 0.00 3.77
1281 1301 2.214216 CCTCCCGACTGACCCAACA 61.214 63.158 0.00 0.00 0.00 3.33
1282 1302 1.004918 CTCCCGACTGACCCAACAC 60.005 63.158 0.00 0.00 0.00 3.32
1283 1303 2.032071 CCCGACTGACCCAACACC 59.968 66.667 0.00 0.00 0.00 4.16
1284 1304 2.813726 CCCGACTGACCCAACACCA 61.814 63.158 0.00 0.00 0.00 4.17
1285 1305 1.301716 CCGACTGACCCAACACCAG 60.302 63.158 0.00 0.00 0.00 4.00
1286 1306 1.745890 CGACTGACCCAACACCAGA 59.254 57.895 0.00 0.00 0.00 3.86
1287 1307 0.321671 CGACTGACCCAACACCAGAT 59.678 55.000 0.00 0.00 0.00 2.90
1288 1308 1.813513 GACTGACCCAACACCAGATG 58.186 55.000 0.00 0.00 0.00 2.90
1289 1309 0.401738 ACTGACCCAACACCAGATGG 59.598 55.000 0.00 0.00 37.43 3.51
1322 1342 2.362369 CGACACCAGATGGGCTCCT 61.362 63.158 3.48 0.00 42.05 3.69
1323 1343 1.222936 GACACCAGATGGGCTCCTG 59.777 63.158 3.48 0.00 42.05 3.86
1335 1355 1.450312 GCTCCTGGTTGATCCCACG 60.450 63.158 0.00 0.00 34.77 4.94
1364 1384 6.214399 ACGGCCAATTTAAATAAAAACGACA 58.786 32.000 2.24 0.00 0.00 4.35
1367 1387 7.062371 CGGCCAATTTAAATAAAAACGACATCA 59.938 33.333 2.24 0.00 0.00 3.07
1474 1494 8.739039 TGTATGTTTTGAAGGATACATGGAAAG 58.261 33.333 0.00 0.00 41.41 2.62
1483 1503 3.633986 GGATACATGGAAAGCTTTGGAGG 59.366 47.826 18.30 6.79 0.00 4.30
1622 1644 9.003658 CCATCTGATCCAAAATATAAGGTGTAC 57.996 37.037 0.00 0.00 0.00 2.90
1908 1941 3.566322 AGTAGCTTCATACTCTAGTGGCG 59.434 47.826 0.00 0.00 29.89 5.69
1942 1975 0.250770 GAGGTTGGGGGTGACTTCAC 60.251 60.000 0.34 0.34 45.72 3.18
1963 1996 1.063806 GCGCCTCAGCTACAATATCG 58.936 55.000 0.00 0.00 36.60 2.92
1978 2011 0.613572 TATCGTCCCAGGTCACAGCA 60.614 55.000 0.00 0.00 0.00 4.41
2047 2080 3.531538 GATCCTTTAATGCGTGAGTGGA 58.468 45.455 0.00 0.00 0.00 4.02
2067 2116 2.753043 GCCCTCATGTGCCACCAG 60.753 66.667 0.00 0.00 0.00 4.00
2068 2117 2.759114 CCCTCATGTGCCACCAGT 59.241 61.111 0.00 0.00 0.00 4.00
2069 2118 1.990424 CCCTCATGTGCCACCAGTA 59.010 57.895 0.00 0.00 0.00 2.74
2070 2119 0.327924 CCCTCATGTGCCACCAGTAA 59.672 55.000 0.00 0.00 0.00 2.24
2071 2120 1.453155 CCTCATGTGCCACCAGTAAC 58.547 55.000 0.00 0.00 0.00 2.50
2072 2121 1.003580 CCTCATGTGCCACCAGTAACT 59.996 52.381 0.00 0.00 0.00 2.24
2073 2122 2.079158 CTCATGTGCCACCAGTAACTG 58.921 52.381 0.00 0.00 0.00 3.16
2074 2123 1.419762 TCATGTGCCACCAGTAACTGT 59.580 47.619 0.00 0.00 0.00 3.55
2075 2124 1.536766 CATGTGCCACCAGTAACTGTG 59.463 52.381 0.00 0.00 0.00 3.66
2076 2125 0.179032 TGTGCCACCAGTAACTGTGG 60.179 55.000 11.78 11.78 41.30 4.17
2077 2126 3.668386 GCCACCAGTAACTGTGGC 58.332 61.111 20.92 20.92 44.41 5.01
2078 2127 1.228124 GCCACCAGTAACTGTGGCA 60.228 57.895 26.56 0.00 46.94 4.92
2090 2139 2.410322 CTGTGGCAGGGTGGTTGCTA 62.410 60.000 0.00 0.00 41.27 3.49
2109 2158 2.202932 GAGCACCACCGCGATGAT 60.203 61.111 8.23 0.00 36.85 2.45
2191 2240 3.341823 GTGAGATCCACATCTTTGCACT 58.658 45.455 8.84 0.00 45.03 4.40
2234 2283 7.886629 AGGTTGTGATATCTTTGCAATATGT 57.113 32.000 0.00 0.00 0.00 2.29
2330 2379 1.953686 TGGTTAACCAGCTGAAAGTGC 59.046 47.619 23.69 0.34 42.01 4.40
2331 2380 1.953686 GGTTAACCAGCTGAAAGTGCA 59.046 47.619 20.12 0.00 33.59 4.57
2332 2381 2.360801 GGTTAACCAGCTGAAAGTGCAA 59.639 45.455 20.12 0.33 33.59 4.08
2333 2382 3.372060 GTTAACCAGCTGAAAGTGCAAC 58.628 45.455 17.39 9.02 35.30 4.17
2334 2383 5.995260 GGTTAACCAGCTGAAAGTGCAACT 61.995 45.833 20.12 0.00 43.07 3.16
2335 2384 6.716315 GGTTAACCAGCTGAAAGTGCAACTA 61.716 44.000 20.12 0.00 41.07 2.24
2336 2385 7.959066 GGTTAACCAGCTGAAAGTGCAACTAT 61.959 42.308 20.12 0.00 41.07 2.12
2337 2386 9.633581 GGTTAACCAGCTGAAAGTGCAACTATC 62.634 44.444 20.12 0.00 41.07 2.08
2345 2394 3.175133 GTGCAACTATCCCTGGGTG 57.825 57.895 13.56 4.13 0.00 4.61
2346 2395 0.328258 GTGCAACTATCCCTGGGTGT 59.672 55.000 13.56 7.73 0.00 4.16
2347 2396 1.072266 TGCAACTATCCCTGGGTGTT 58.928 50.000 13.56 13.17 0.00 3.32
2348 2397 1.427368 TGCAACTATCCCTGGGTGTTT 59.573 47.619 13.56 0.00 0.00 2.83
2349 2398 2.158385 TGCAACTATCCCTGGGTGTTTT 60.158 45.455 13.56 0.00 0.00 2.43
2350 2399 2.897326 GCAACTATCCCTGGGTGTTTTT 59.103 45.455 13.56 0.00 0.00 1.94
2351 2400 3.306019 GCAACTATCCCTGGGTGTTTTTG 60.306 47.826 13.56 11.60 0.00 2.44
2352 2401 3.169512 ACTATCCCTGGGTGTTTTTGG 57.830 47.619 13.56 0.00 0.00 3.28
2353 2402 2.449345 ACTATCCCTGGGTGTTTTTGGT 59.551 45.455 13.56 0.00 0.00 3.67
2354 2403 3.658705 ACTATCCCTGGGTGTTTTTGGTA 59.341 43.478 13.56 0.00 0.00 3.25
2355 2404 3.621682 ATCCCTGGGTGTTTTTGGTAA 57.378 42.857 13.56 0.00 0.00 2.85
2356 2405 3.621682 TCCCTGGGTGTTTTTGGTAAT 57.378 42.857 13.56 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.130561 GACTTACGCCAATCAAGCACC 59.869 52.381 0.00 0.00 0.00 5.01
89 90 6.233434 AGCAACTTTGACTATGTTGATGAGA 58.767 36.000 16.16 0.00 41.84 3.27
100 101 3.128349 GACGACCAAGCAACTTTGACTA 58.872 45.455 0.00 0.00 0.00 2.59
119 120 1.735559 GTAAGCCACACCCGACGAC 60.736 63.158 0.00 0.00 0.00 4.34
135 136 1.479323 GACGTCCTATGCCAACCAGTA 59.521 52.381 3.51 0.00 0.00 2.74
151 152 0.889306 GGTGCTAAGACCTGAGACGT 59.111 55.000 0.00 0.00 32.69 4.34
388 389 1.226323 CGACTCCACCATCGACGAC 60.226 63.158 0.00 0.00 40.86 4.34
421 422 1.025041 TCATCGTCATCACTCCTCCG 58.975 55.000 0.00 0.00 0.00 4.63
422 423 1.751351 TGTCATCGTCATCACTCCTCC 59.249 52.381 0.00 0.00 0.00 4.30
440 441 1.292223 CGTTGAGGACATCCGGTGT 59.708 57.895 0.00 5.22 45.83 4.16
455 456 1.784525 CCGTCAAAGAGAGAAGCGTT 58.215 50.000 0.00 0.00 0.00 4.84
465 469 0.102663 TACACACACGCCGTCAAAGA 59.897 50.000 0.00 0.00 0.00 2.52
473 477 1.196808 CCACAAAGATACACACACGCC 59.803 52.381 0.00 0.00 0.00 5.68
475 479 5.407502 TCTATCCACAAAGATACACACACG 58.592 41.667 0.00 0.00 0.00 4.49
486 490 8.378565 ACTCACCCAATATATCTATCCACAAAG 58.621 37.037 0.00 0.00 0.00 2.77
507 511 2.808543 CTGGCAAAGACAAGGTACTCAC 59.191 50.000 0.00 0.00 38.49 3.51
508 512 2.810400 GCTGGCAAAGACAAGGTACTCA 60.810 50.000 0.00 0.00 38.49 3.41
526 530 0.249405 AAAACGGCCACAACATGCTG 60.249 50.000 2.24 0.00 39.78 4.41
527 531 1.269448 CTAAAACGGCCACAACATGCT 59.731 47.619 2.24 0.00 0.00 3.79
584 588 0.171007 AAGTCGGCCGCAATTCATTG 59.829 50.000 23.51 0.00 40.66 2.82
585 589 1.745232 TAAGTCGGCCGCAATTCATT 58.255 45.000 23.51 9.19 0.00 2.57
586 590 1.745232 TTAAGTCGGCCGCAATTCAT 58.255 45.000 23.51 4.42 0.00 2.57
587 591 1.524848 TTTAAGTCGGCCGCAATTCA 58.475 45.000 23.51 0.00 0.00 2.57
617 633 6.939730 TCATGTTTTAGTGGCTATTTGAGACA 59.060 34.615 0.00 0.00 42.82 3.41
618 634 7.119846 AGTCATGTTTTAGTGGCTATTTGAGAC 59.880 37.037 0.00 0.00 0.00 3.36
672 690 4.710324 ACATTTAACCTCCTCGTGTTCAA 58.290 39.130 0.00 0.00 0.00 2.69
680 698 5.125578 GGATGGTTTGACATTTAACCTCCTC 59.874 44.000 8.60 4.02 43.36 3.71
774 794 3.005155 GGAGACAAGATAAATGGCATGGC 59.995 47.826 13.29 13.29 0.00 4.40
841 861 2.627945 ACCAACGCATGTACATAGGTG 58.372 47.619 17.08 17.08 0.00 4.00
848 868 4.939509 ATAGACAAACCAACGCATGTAC 57.060 40.909 0.00 0.00 0.00 2.90
918 938 8.668510 AAAGGGCATGATTCGCTTATATATAG 57.331 34.615 0.00 0.00 35.97 1.31
1077 1097 1.747206 GCCTGGAGTTTCACCGCATAT 60.747 52.381 0.00 0.00 0.00 1.78
1189 1209 2.040544 CGACGAAAGCAGGGCCATT 61.041 57.895 6.18 0.00 0.00 3.16
1270 1290 0.401738 CCATCTGGTGTTGGGTCAGT 59.598 55.000 0.00 0.00 31.18 3.41
1271 1291 0.322816 CCCATCTGGTGTTGGGTCAG 60.323 60.000 0.00 0.00 44.42 3.51
1272 1292 1.767036 CCCATCTGGTGTTGGGTCA 59.233 57.895 0.00 0.00 44.42 4.02
1273 1293 4.743018 CCCATCTGGTGTTGGGTC 57.257 61.111 0.00 0.00 44.42 4.46
1276 1296 1.379044 GGAGCCCATCTGGTGTTGG 60.379 63.158 0.00 0.00 36.04 3.77
1277 1297 1.379044 GGGAGCCCATCTGGTGTTG 60.379 63.158 0.00 0.00 36.04 3.33
1278 1298 1.542375 AGGGAGCCCATCTGGTGTT 60.542 57.895 8.53 0.00 38.92 3.32
1279 1299 2.125912 AGGGAGCCCATCTGGTGT 59.874 61.111 8.53 0.00 38.92 4.16
1280 1300 1.856539 AACAGGGAGCCCATCTGGTG 61.857 60.000 8.53 0.00 38.92 4.17
1281 1301 1.542375 AACAGGGAGCCCATCTGGT 60.542 57.895 8.53 0.00 38.92 4.00
1282 1302 1.077212 CAACAGGGAGCCCATCTGG 60.077 63.158 8.53 0.00 38.92 3.86
1283 1303 0.549950 ATCAACAGGGAGCCCATCTG 59.450 55.000 8.53 0.00 38.92 2.90
1284 1304 0.842635 GATCAACAGGGAGCCCATCT 59.157 55.000 8.53 0.00 38.92 2.90
1285 1305 0.179006 GGATCAACAGGGAGCCCATC 60.179 60.000 8.53 1.48 37.38 3.51
1286 1306 1.925888 GGATCAACAGGGAGCCCAT 59.074 57.895 8.53 0.00 37.38 4.00
1287 1307 2.669133 CGGATCAACAGGGAGCCCA 61.669 63.158 8.53 0.00 40.24 5.36
1288 1308 2.190578 CGGATCAACAGGGAGCCC 59.809 66.667 0.00 0.00 40.24 5.19
1289 1309 1.153349 GTCGGATCAACAGGGAGCC 60.153 63.158 0.00 0.00 39.96 4.70
1290 1310 0.741221 GTGTCGGATCAACAGGGAGC 60.741 60.000 0.00 0.00 0.00 4.70
1322 1342 2.220586 TCTGGCGTGGGATCAACCA 61.221 57.895 0.00 0.00 41.20 3.67
1323 1343 1.745489 GTCTGGCGTGGGATCAACC 60.745 63.158 0.00 0.00 38.08 3.77
1474 1494 3.022406 AGAGATGAAATGCCTCCAAAGC 58.978 45.455 0.00 0.00 0.00 3.51
1483 1503 3.065095 GCACCTGAAGAGAGATGAAATGC 59.935 47.826 0.00 0.00 0.00 3.56
1908 1941 2.887568 CTCACATCGGCTCCACGC 60.888 66.667 0.00 0.00 38.13 5.34
1942 1975 2.064762 GATATTGTAGCTGAGGCGCTG 58.935 52.381 7.64 0.00 44.37 5.18
1963 1996 1.192146 TACCTGCTGTGACCTGGGAC 61.192 60.000 0.00 0.00 0.00 4.46
2062 2111 0.606401 CCCTGCCACAGTTACTGGTG 60.606 60.000 17.21 11.66 35.51 4.17
2063 2112 1.060163 ACCCTGCCACAGTTACTGGT 61.060 55.000 17.21 0.00 35.51 4.00
2064 2113 0.606401 CACCCTGCCACAGTTACTGG 60.606 60.000 17.21 1.58 35.51 4.00
2065 2114 0.606401 CCACCCTGCCACAGTTACTG 60.606 60.000 11.21 11.21 37.52 2.74
2066 2115 1.060163 ACCACCCTGCCACAGTTACT 61.060 55.000 0.00 0.00 0.00 2.24
2067 2116 0.179001 AACCACCCTGCCACAGTTAC 60.179 55.000 0.00 0.00 0.00 2.50
2068 2117 0.179004 CAACCACCCTGCCACAGTTA 60.179 55.000 0.00 0.00 0.00 2.24
2069 2118 1.455587 CAACCACCCTGCCACAGTT 60.456 57.895 0.00 0.00 0.00 3.16
2070 2119 2.195683 CAACCACCCTGCCACAGT 59.804 61.111 0.00 0.00 0.00 3.55
2071 2120 2.410322 TAGCAACCACCCTGCCACAG 62.410 60.000 0.00 0.00 40.86 3.66
2072 2121 2.456443 TAGCAACCACCCTGCCACA 61.456 57.895 0.00 0.00 40.86 4.17
2073 2122 1.971695 GTAGCAACCACCCTGCCAC 60.972 63.158 0.00 0.00 40.86 5.01
2074 2123 2.434331 GTAGCAACCACCCTGCCA 59.566 61.111 0.00 0.00 40.86 4.92
2075 2124 2.746277 CGTAGCAACCACCCTGCC 60.746 66.667 0.00 0.00 40.86 4.85
2076 2125 1.741770 CTCGTAGCAACCACCCTGC 60.742 63.158 0.00 0.00 40.24 4.85
2077 2126 1.741770 GCTCGTAGCAACCACCCTG 60.742 63.158 2.53 0.00 41.89 4.45
2078 2127 2.663196 GCTCGTAGCAACCACCCT 59.337 61.111 2.53 0.00 41.89 4.34
2099 2148 1.889105 GTGGCATCATCATCGCGGT 60.889 57.895 6.13 0.00 0.00 5.68
2109 2158 1.377072 CATCACACCGGTGGCATCA 60.377 57.895 36.47 16.44 45.32 3.07
2139 2188 0.329261 CAAGAAGGCACCCTCCATCA 59.671 55.000 0.00 0.00 30.89 3.07
2204 2253 6.179756 TGCAAAGATATCACAACCTACATGT 58.820 36.000 2.69 2.69 0.00 3.21
2206 2255 7.886629 ATTGCAAAGATATCACAACCTACAT 57.113 32.000 1.71 0.00 0.00 2.29
2322 2371 2.290896 CCCAGGGATAGTTGCACTTTCA 60.291 50.000 0.00 0.00 29.36 2.69
2323 2372 2.290960 ACCCAGGGATAGTTGCACTTTC 60.291 50.000 14.54 0.00 0.00 2.62
2324 2373 1.710809 ACCCAGGGATAGTTGCACTTT 59.289 47.619 14.54 0.00 0.00 2.66
2325 2374 1.004745 CACCCAGGGATAGTTGCACTT 59.995 52.381 14.54 0.00 0.00 3.16
2326 2375 0.620556 CACCCAGGGATAGTTGCACT 59.379 55.000 14.54 0.00 0.00 4.40
2327 2376 0.328258 ACACCCAGGGATAGTTGCAC 59.672 55.000 14.54 0.00 0.00 4.57
2328 2377 1.072266 AACACCCAGGGATAGTTGCA 58.928 50.000 14.54 0.00 0.00 4.08
2329 2378 2.215942 AAACACCCAGGGATAGTTGC 57.784 50.000 14.54 0.00 0.00 4.17
2330 2379 3.258123 CCAAAAACACCCAGGGATAGTTG 59.742 47.826 14.54 9.35 0.00 3.16
2331 2380 3.116900 ACCAAAAACACCCAGGGATAGTT 60.117 43.478 14.54 11.11 0.00 2.24
2332 2381 2.449345 ACCAAAAACACCCAGGGATAGT 59.551 45.455 14.54 4.68 0.00 2.12
2333 2382 3.169512 ACCAAAAACACCCAGGGATAG 57.830 47.619 14.54 3.95 0.00 2.08
2334 2383 4.743705 TTACCAAAAACACCCAGGGATA 57.256 40.909 14.54 0.00 0.00 2.59
2335 2384 3.621682 TTACCAAAAACACCCAGGGAT 57.378 42.857 14.54 0.00 0.00 3.85
2336 2385 3.621682 ATTACCAAAAACACCCAGGGA 57.378 42.857 14.54 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.