>input_sequence_82755
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-----------------------------------------------------------ATGGTAACCTCAATGGCTCGA
GGTCTCACCATTGTAGTCTTCTTGCTAGTGTTTGTTGCAGCGACGATATCATCTACATATGCGGTGAAACTCCAGGCGGA
CGATGCCCCTAATGAGGCCGAGGGGCCCACCGACACTTCTTCTGAGGCTGAGGGGCCCACCGACACTTCTTCTGAAGCCG
AGGGGCCCAATGGCCCTGCTTTCGTCGAGATGGTTATTAAGAACCCCTACCCAGCTTCCAGCCTTAACTCCCGCTCTGAT
GGCCTCCCGACTGACCCAACACCAGATGGGCTCCCTGTTGATCCGACACCAGATGGGCTCCTGGTTGATCCCACGCCAGA
CGGCCAATTTAAATAA----------------------------------------------------------------
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>chr1B_1_TraesCS1B01G047500
GAGGAGGGCCATCGTGGTGACGATGGCACGAGATGGGCGGTTGGTTCCGGTGCTTGATTGGCGTAAGTCCAAGCTTTCTC
TCCAGCTATTCTCATCAACATAGTCAAAGTTGCTTGGTCGTCGTCGGGTGTGGCTTACTGGTTGGCATAGGACGTCTCAG
GTCTTAGCACCTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGGTCGTCGATGGT
GGAGTCGGAATCACCGGCTCACGGAGGAGTGATGACGATGACACCGGATGTCCTCA---ACGCTTCTCTCTTTGACGGCG
TGTGTGTATCTTTGTGGATAGATATATTGGGTGAGTACCTTGTCTTTGCCAGCATGTTGTGGCCGTTTTAGCCTAGTTTT
TTATTAATTAACCAGACAACTTTTTTTCAATGAATTG------------CGGCCGACTTAAAAAAATTCCTCTGTCTCAA
ATAGCCACTAAA--ACATGACTCAAATATAAACTTAACAATGTCATCAATTGAACACGAGGAGGTTAAATGTCAAACCAT
CCACATGGCCAATGACATGCAAGCCTACCGTATAATAGAA--AAAATAATCATGTAAGATACATGAGGCCCTAGCCATGC
CATTTATCTTGTCTCCTGTCCAATGCATGTTGTAGACATAAAGCCCCAATAATAGACACTCACCTATGTACATGCGTTGG
TTTGTCTATTTCTATCATCTCCTTTCCTATTTGTGTTATCTCTTCTCCATTTCTGGACTATATATAAGCGAATCATGCCC
TTTCCACCACCTCTAGTTCTTGTCACCAAATCTCTTATTACAATTTGCCACAATTTTGAATGGTAACCTCAATGGCTCGA
GGTCTCACCATTGTAGTCTTCTTGCTAGTGTTTGTTGCAGCGACGATATCATCTACATATGCGGTGAAACTCCAGGCGGA
CGATGCCCCTAATGAGGCCGAGGGGCCCACCGACACTTCTTCTGAGGCTGAGGGGCCCACCGACACTTCTTCTGAAGCCG
AGGGGCCCAATGGCCCTGCTTTCGTCGAGATGGTTATTAAGAACCCCTACCCAGCTTCCAGCCTTAACTCCCGCTCTGAT
GGCCTCCCGACTGACCCAACACCAGATGGGCTCCCTGTTGATCCGACACCAGATGGGCTCCTGGTTGATCCCACGCCAGA
CGGCCAATTTAAATAAAAACGACATCAATGTTTTGATGATTAATGTTTGACACTATGTATGTGTATGTAAGATGATCAAA
AGAATTTGCCATGTAGATTTATTTAAGTGTATGTTTTGAAGGATACATGGAAAGCTTTGGAGGCATTTCATCTCTCTTCA
GGTGCAATAGATTGAAGGGCACTGGTTGTATATCTACCATGTGATTTGTATTGGTCCGTGTTAAAAAATATTGATGCTTA
AGAATAAGTACTACTCCATCTGATCCAAAATAT--AAGGTGTACTAATTTTTAGAAAAGTGAATCCACTCTATGTTTGAC
CCAGTTTAGTGAGCAAAATATG---AACTAAAATATAAAATCAATATTATTAGATTCATAGTATGTAATAT-------TT
ATATTTATTTGGTATGTAAATATTGACTTGATTTTCTATAAACTTGGTAAACATAGAAATGTTTGACTTTCTG-AAAACA
CAATATTCCTTATATTTTGGGATGGATAGAGTACTTAAAAGACTAGAGATCTATGGTTTGCTTCATAATTCTAGCCCAAG
TAGCTTCATACTCTAGTGGCGCGTGGAGCCGATGTGAGGTTGGGGGTGACTTCACAGCGCCTCAGCTACAATATCGTCCC
AGGTCACAGCAGGTAGCCCCCCTAGCAATCCCACCATCTCGGAGGTTGCTTGCCATGCGATCCTTTAATGCGTGAGTGGA
GGGCCCTCATGT----------------GCCACCAGTAACTGTGGCAGGGTGGTTGCTACGAGCACCACCGCGATGATGA
TGCCACCGGTGTGATGCATGGCAGGCATGATGGAGGGTGCCTTCTTGGCTGTGCCAGCGTGAGATCCACATCTTTGCACT
ACATGTGCGTCCACATGTAGGTTGTGATATCTTTGCAATATGTTTCATTTTAATTTTAGAAAAATTCTTTCACATGACTT
TAAATATAAAGCCCTTTTAGGGAAAGTCTGATACAAGCTGGTTAACCAGCTGAAAGTGCAACTATCCCTGGGTGTTTTTG
GTAAT
>chrUn_1
GAGGAGGGCCTTCGTGGTGACGATGGCACGAGATGAGTGGTTGGTTCCAGTGCTTGATTGGCGTAAGTCCAAGCTTTCTC
TCCAGGTATGCTCATCAACAGAGTCAAAGTTGCTTGGTCATCGTCGGGTGTGGCTGACTGGTTGGCATAGGCCGTCTCAG
GTCTTAGCGCCTATTTGTGGGCTA--------------------------------------------------------
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------------------------------------------------------------TGTTGGTGATCGTCGATGGT
GGATACGGAATCACCGGCTCATAGAGGAGTGATGACGATGCCACCGGATGTCCTCGACGACGCTTCTCACTTTGACAGAG
TGTGTGTATATTTGTGGGTAGCCATATTGGCCGAGTACCTTGTCTTTGCAGGTATGTTGCGACCGTTTTAGCCTAGTTCT
TTGTTAATTAACCAGGCAACTCTTT-TTTTAGTGAATTGAGATCCTCCTAGTCCGACTTAAAAAAAAACCTCCATCTCAA
ATAGCCACTAAAACATATGACTCAGATATAAACTTAACAATGTCATCAACTGAACATAAGGAGGTTAAATGCCAAACCAT
CCACATAGCCAATGACATGCAAGCCTACCGTATAATAGAA--AAAA--ATAATGTAAAATACATGAGGCCCTAACCATGC
CATTTATCTTGTCCGCTGTCCAATGCATGTTGTAGACATAATGCCCCAATAATAGACACTAACCTATCTACATGCGTTGG
TTTGTCTATTTCTATCACCTCCTTTCCTATTTGTGTTATCTCTTCTCCATTTCTGGAATATATATAAGTGAATCATGCCC
TTCCCACCACCTCTAATTCTTGTCACCAAATCTCTTATTACAGTTTGCCACAATTTCGAATGGTAACCTCAATGGCTAGA
GGTCTCACCATTGTAGGCTTCTTGCTAGTATTTGTTGCAGCGACAATATCATCTACCTATGCGGTGAAACTCCAGGCGGA
TGATGCCCCTAATGTGGCCGAGGGGCCCACTGACACTTCTTCCGAGGCTGAAGGGCCCACCGACACTTCTTCTGAGGCTG
AGGGGCCCGATGGCCCTGCTTTCGTCGACATGGTTATTAAGAACCCCTACCCATCTTCCAGCCTTAAATCCCGTTCTGAT
GGC---------------------------CTCCCTGTTGATCCGACACCAGATGGGCTCCCTGTTGATCCCACTCCAGA
CGGCCAATTTAAATAAAAACAGCCTCGATGTTCTGACGATTAATGTTTGACACTATGCATGTGTATGTAAGATGATCAAA
AGAATTTGCCATGTAGATTTATTAAAGTGTATGTTTTGAAGGATACATGGAAAACTTTGGAGACATTTCATCTCTCTTCG
GGTGCAATATATTGAAGGGCACTGGTTTTATATCTACCTTGTGATTTGTATC-GTCCGTGTTAAAAAATATTAATGCTTA
AGAATAAGTACTACTCCATCTAATCCAAA-TAT--AAGGTGCATTAGTTTTTAGAAAAGTCAATCTACTCTATGTTTGAC
CCAGTTTAGTGAGCAAAATATTAATAACTACAATACAAAATCGACATTATTAGATTCATCCTGCTATATATTTTTATATT
ATATTTATTTGGTATGTAAATATTGACATGATTTTCTATAAACTTGGTAAACATATAAATGTTTGACTTTCTGAAAAACA
CAATATTCCTTATATTTTGGGATGGAGAGAGTACTTAAAAGACTATAGATCTATGGTTTGCTTCATAATTCTAGCCCAAG
TAGCTTCATACTCTGGTGGCACGTGGAGCCGACGTGAGGTTGCGGGTGACTTCATAGCGCCTCAGCTACAATATCATCCT
AGGGCACAGCGGGTAGCCCCCCTAGCAATCCCACCATCTCGGAGGTTGCTTGCCATGTGATCCTTTAATGCGTGACTGGT
GGGCCCTCATGT----------------GCG----------------GGGTGGTTGCTGTGAGCACCGCCGTGATGACGA
TGCCACCGGTGTGATGCATGCCAGGCACGATGGAGTGTGCCTTCTTGGCTGTCG--GCGTGAGATCCACATCTTTGCACC
ACATGTGTGTCCGTGTGTAAGTTGTGATATCTTTGCAATATGATTCATTTTAATTTCAGAAAAATTCTTTCGCATGACTT
CAAATATAAAGCCCTTTTAGGGAAAGTCTGATACAAGCTGGTTAACCAGC------------------------------
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>chr1A_511
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---------------------------------AGTACCTTGTCTTTGCAGGCATGTTGCGGCCATTTTAGCCTAGTTTT
TTGTTAATTAACCAGGCAACTCTTTTTTTTAATGAATTAAGATCCTCCTCGGCCGACTTAAAAAAGTTCCTCCATCTCAA
ATAGCCACTAAAACACATGACTCAAATATAAACTTAACAATGTCATCAACTGAACACAAGGAGGTTAAATGTCAAACCAT
CCACATGGCCAATGACATACAAGCCTGCCGTATAATAGAGAGAAAA--ATCATGTAAAATACATGAGGCCCTAATCATGC
CATCTATCTTGTCTCCTGTCCAATGTATGTTGTAGACATAAAGCCCCAATAATAGACACTAACCTATCTACATGCGTTAG
TTTGTCTATTTCTATCATCTCCTTTCCTATTTGTGTTATCTCTTCTCCATTTCTGGATTATATATAAGCCAATCATGCCC
TTTCCACCACCTCTAGTTCTTCTCACCAAATCTCTTATTACAATTTGCCACAATTTTGAATGGTAACTTCAATGGCTCGA
GGTCTCACCATTGTAGTATTCTTGCTAGTGTTTGTTGCAGCGACGATATCATCTACCTATGCGGTGAAACTCCAGGCGGA
CGATTCCCCTAATGTGGCCGAGGGGCCCGCCGACACTTCTTCTGAGGCTGAGGGGCCCGCCGACAATTCTTCTGAGGCTG
AGGGGCCCGATGGCCCTGCTTTCGTCGAGATGGTTATTAAGAACCCCTACCCAGCTTCCAGCCTTAACTCACGCTCTGAT
GGCCTCCCG---------------------------GTTGACCCAACACCAGATGGGCTCCCTGTTGATCCCACACCAGA
CGGCCAATTTAAATAAAAACGACCTCGATGTTTTGACGATTAATGTTTGACACTATGTATGTATATGTAAGATGATCAAA
AGAATTTGCCATGTAGATTTATTTAAGTGTATGTTTTGAAGGATACATGGAAAACTTTGAAGCCATTTCATCTCTCTTCA
GGTGCTATAGATTGAAGGGCACTGGTTGTATATCTACCATGTGATTTGTATTGGTCCGCGTTAAAAAATATTAATGCTTA
AGAATAAGTACTACTCCATCTGATCCAAAATATAAAAGGTGTATTAATTTTTAGAAAAGTGAATCCACTCTATGTTTGAC
CCAGTTTAGTGAGAAAAATATGAATAACTAAAATACAAAATCGATATTATTAGATTCATCCTGCTATATATTTTTATATT
ATATTTATTTGGTTTGTAAATATTGACTTGATTTTCTATAAACTTGGTAAACATAGAAATGTTTGACTTTCTGAAAAACA
CAATATTCCTTATATTTTAGGATGGAAAGAGTACTTAAAAGACTAGAGATCTATGGTTTGCTTCATAATTCTAGCCCAAG
TAGCTTCATACTCTAGTGGCACGTGGAGCTGATGTGAGGTTGGGGGCGACTTCATAGCGCCTCAGCTACAATATCATCCC
AGGTCATAGCGGGTAG-CCCCCTAGCAATCCCACCATCTCGGAGGTTGCTTGACATGCGATCCTTTAATGCGTGAGTGGT
GGGCCCTCATGCGCCACCCGTAAATGTGGCG----------------GGGTGGTTGCTGCGAGCACCGCCGCGATGACGA
TGCCACCGGTGTGATGCATGGCAGGCCCGATGGAGGGTGCCTTCTTGGCTGTGCCAGCGTGAGATCCACATCCTTCCACC
ACATGTGCGTCCGCGTGTAGGTTGTGATATCTTTGCAATATGATTCATTTTGATTTTGGGAAAATTCTTTCGCACGACTT
TAAATATAAAGCCCTTTTAGGGAAAGTCTGATACAA--------------------------------------------
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>SNPs
----------S------------------------S-S----------S-------------------------------
-----S---S----------S------------------S---------------S---------------S--------
--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----------
---SS----------------SS-----------------S--------------S------------S-------S-S-
---------S-------S---SS-------SS-----------------SS--------S--------------------
--S------------S-----S-----SSSS-SSSSS-----------------------------------SS------
-------------------------------------------------S-------S----------------------
----------------------------------------------SS---------S---------------S------
------------------------------------------------------------S------S------------
---------------------------------------------------------S----------------------
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--------------------------------------------------------S-----------------------
--------------S------------------------------------------------------------S--S-
--------S-----------------------------------------------------------------------
---------SSSSSSSSSSSSSSSSSSSSS-------------------------------SS-----------S-----
-----------------------S--S---------S-------------------------------------------
-----------------------------------------------------S--------S-----------------
------------------------------------------------------------------------S-------
-------------------------------------------S------------------------------------
-----------------------------------S------S----------------SS-SSSSS-------------
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--------------------------S-----------------------------------------------------
--------------------S---------------------------------S--------------------S----
----------S--------------------------------------------------------------------S
------------------------------SSSSSSSSSSSSSSSSS-----------S--------S---------S--
---------------------------S---------------------------------------------------S
------------S-S---------------------------S----------------------------S--------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_479
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-----------------------------------------------------------ACGCTTCTCTCTTTGACGGC-
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>reverse_2116
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-----------------------------------GTAACTGTGGCAGGGTGGTT-------------------------
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