Multiple sequence alignment - TraesCS1B01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G046800 chr1B 100.000 3272 0 0 1 3272 26620645 26623916 0.000000e+00 6043.0
1 TraesCS1B01G046800 chr1B 89.698 796 57 14 1 792 26853542 26852768 0.000000e+00 992.0
2 TraesCS1B01G046800 chr1D 97.258 2079 43 4 1042 3119 18208776 18206711 0.000000e+00 3511.0
3 TraesCS1B01G046800 chr1D 98.658 149 2 0 3124 3272 18206241 18206093 6.960000e-67 265.0
4 TraesCS1B01G046800 chr1D 83.193 119 14 6 482 597 431191392 431191277 1.610000e-18 104.0
5 TraesCS1B01G046800 chr5B 78.960 865 99 40 1 843 410596554 410597357 2.250000e-141 512.0
6 TraesCS1B01G046800 chr2B 79.107 560 82 28 296 844 793382355 793382890 1.440000e-93 353.0
7 TraesCS1B01G046800 chr3B 79.286 280 41 13 335 608 708604602 708604870 2.590000e-41 180.0
8 TraesCS1B01G046800 chr2D 83.571 140 17 4 706 843 455353460 455353325 3.430000e-25 126.0
9 TraesCS1B01G046800 chr3D 83.871 124 13 6 504 624 439630845 439630726 9.600000e-21 111.0
10 TraesCS1B01G046800 chr3D 84.694 98 10 3 747 843 375808 375901 3.480000e-15 93.5
11 TraesCS1B01G046800 chr2A 76.923 208 32 12 143 345 510073990 510074186 1.610000e-18 104.0
12 TraesCS1B01G046800 chr4D 78.322 143 25 5 703 844 9210099 9210236 1.620000e-13 87.9
13 TraesCS1B01G046800 chr6B 89.583 48 2 3 554 600 4947755 4947800 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G046800 chr1B 26620645 26623916 3271 False 6043 6043 100.000 1 3272 1 chr1B.!!$F1 3271
1 TraesCS1B01G046800 chr1B 26852768 26853542 774 True 992 992 89.698 1 792 1 chr1B.!!$R1 791
2 TraesCS1B01G046800 chr1D 18206093 18208776 2683 True 1888 3511 97.958 1042 3272 2 chr1D.!!$R2 2230
3 TraesCS1B01G046800 chr5B 410596554 410597357 803 False 512 512 78.960 1 843 1 chr5B.!!$F1 842
4 TraesCS1B01G046800 chr2B 793382355 793382890 535 False 353 353 79.107 296 844 1 chr2B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1157 0.108585 GGAGCGGGGCATCTCAATTA 59.891 55.0 0.0 0.0 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2687 2853 0.107017 CCTGCTCCCCTACCACATTG 60.107 60.0 0.0 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.004862 CTCTCCCTGAAGGTTTTCCCC 59.995 57.143 0.00 0.00 41.86 4.81
116 118 6.311935 TGCGTAGGTAGTAAAAATAGCACAAG 59.688 38.462 0.00 0.00 0.00 3.16
181 183 3.422796 TCCTTGATAGGAGATAGCGACC 58.577 50.000 0.00 0.00 45.82 4.79
184 186 3.074675 TGATAGGAGATAGCGACCCTC 57.925 52.381 0.00 0.00 0.00 4.30
196 199 2.603776 ACCCTCGAAACCCGCTCT 60.604 61.111 0.00 0.00 38.37 4.09
263 266 4.351874 AAAGAGACGATTTTCTCCACCA 57.648 40.909 0.00 0.00 42.81 4.17
444 539 8.479280 CGTTTCTTTTGGTTTTCATTCTACATG 58.521 33.333 0.00 0.00 0.00 3.21
447 542 9.528018 TTCTTTTGGTTTTCATTCTACATGTTC 57.472 29.630 2.30 0.00 0.00 3.18
866 1032 8.619146 TTTTTCAAATGCTTAATGCGAGATAG 57.381 30.769 0.00 0.00 46.63 2.08
867 1033 5.929697 TCAAATGCTTAATGCGAGATAGG 57.070 39.130 0.00 0.00 46.63 2.57
868 1034 4.756642 TCAAATGCTTAATGCGAGATAGGG 59.243 41.667 0.00 0.00 46.63 3.53
869 1035 2.839486 TGCTTAATGCGAGATAGGGG 57.161 50.000 0.00 0.00 46.63 4.79
870 1036 2.047061 TGCTTAATGCGAGATAGGGGT 58.953 47.619 0.00 0.00 46.63 4.95
871 1037 2.224281 TGCTTAATGCGAGATAGGGGTG 60.224 50.000 0.00 0.00 46.63 4.61
872 1038 2.417719 CTTAATGCGAGATAGGGGTGC 58.582 52.381 0.00 0.00 0.00 5.01
873 1039 0.685097 TAATGCGAGATAGGGGTGCC 59.315 55.000 0.00 0.00 0.00 5.01
874 1040 2.056906 AATGCGAGATAGGGGTGCCC 62.057 60.000 0.00 0.00 45.90 5.36
883 1049 2.043953 GGGGTGCCCAGATCCAAC 60.044 66.667 9.76 0.00 44.65 3.77
884 1050 2.438434 GGGTGCCCAGATCCAACG 60.438 66.667 1.66 0.00 35.81 4.10
885 1051 2.438434 GGTGCCCAGATCCAACGG 60.438 66.667 0.00 0.00 0.00 4.44
886 1052 2.351276 GTGCCCAGATCCAACGGT 59.649 61.111 0.00 0.00 0.00 4.83
887 1053 2.040544 GTGCCCAGATCCAACGGTG 61.041 63.158 0.00 0.00 0.00 4.94
888 1054 2.220586 TGCCCAGATCCAACGGTGA 61.221 57.895 0.00 0.00 0.00 4.02
889 1055 1.002624 GCCCAGATCCAACGGTGAA 60.003 57.895 0.00 0.00 0.00 3.18
890 1056 0.394352 GCCCAGATCCAACGGTGAAT 60.394 55.000 0.00 0.00 0.00 2.57
891 1057 1.134220 GCCCAGATCCAACGGTGAATA 60.134 52.381 0.00 0.00 0.00 1.75
892 1058 2.561569 CCCAGATCCAACGGTGAATAC 58.438 52.381 0.00 0.00 0.00 1.89
893 1059 2.170607 CCCAGATCCAACGGTGAATACT 59.829 50.000 0.00 0.00 0.00 2.12
894 1060 3.198068 CCAGATCCAACGGTGAATACTG 58.802 50.000 0.00 5.99 39.18 2.74
896 1062 4.142026 CCAGATCCAACGGTGAATACTGTA 60.142 45.833 0.00 0.00 45.53 2.74
897 1063 5.043903 CAGATCCAACGGTGAATACTGTAG 58.956 45.833 0.00 0.00 45.53 2.74
898 1064 3.880047 TCCAACGGTGAATACTGTAGG 57.120 47.619 0.00 0.00 45.53 3.18
899 1065 2.093869 TCCAACGGTGAATACTGTAGGC 60.094 50.000 0.00 0.00 45.53 3.93
900 1066 2.354303 CCAACGGTGAATACTGTAGGCA 60.354 50.000 0.00 0.00 45.53 4.75
901 1067 3.331150 CAACGGTGAATACTGTAGGCAA 58.669 45.455 0.00 0.00 45.53 4.52
902 1068 3.906720 ACGGTGAATACTGTAGGCAAT 57.093 42.857 0.00 0.00 44.46 3.56
903 1069 3.793559 ACGGTGAATACTGTAGGCAATC 58.206 45.455 0.00 0.00 44.46 2.67
904 1070 2.794910 CGGTGAATACTGTAGGCAATCG 59.205 50.000 0.00 0.00 0.00 3.34
905 1071 3.737047 CGGTGAATACTGTAGGCAATCGT 60.737 47.826 0.00 0.00 0.00 3.73
906 1072 3.555956 GGTGAATACTGTAGGCAATCGTG 59.444 47.826 0.00 0.00 0.00 4.35
931 1097 2.822701 GGTCGACCGGCCCAAATC 60.823 66.667 20.85 0.00 32.85 2.17
932 1098 2.822701 GTCGACCGGCCCAAATCC 60.823 66.667 3.51 0.00 0.00 3.01
933 1099 4.460683 TCGACCGGCCCAAATCCG 62.461 66.667 0.00 0.00 46.05 4.18
955 1121 3.066814 GGCCGACCGACACCTAGT 61.067 66.667 0.00 0.00 0.00 2.57
956 1122 1.750399 GGCCGACCGACACCTAGTA 60.750 63.158 0.00 0.00 0.00 1.82
957 1123 1.722636 GGCCGACCGACACCTAGTAG 61.723 65.000 0.00 0.00 0.00 2.57
958 1124 1.028868 GCCGACCGACACCTAGTAGT 61.029 60.000 0.00 0.00 0.00 2.73
959 1125 1.012841 CCGACCGACACCTAGTAGTC 58.987 60.000 0.00 2.56 32.77 2.59
960 1126 1.406614 CCGACCGACACCTAGTAGTCT 60.407 57.143 9.33 0.00 33.53 3.24
961 1127 1.932511 CGACCGACACCTAGTAGTCTC 59.067 57.143 9.33 2.26 33.53 3.36
962 1128 2.287769 GACCGACACCTAGTAGTCTCC 58.712 57.143 9.33 0.00 33.15 3.71
963 1129 1.064832 ACCGACACCTAGTAGTCTCCC 60.065 57.143 9.33 0.00 32.68 4.30
964 1130 1.297664 CGACACCTAGTAGTCTCCCG 58.702 60.000 9.33 0.00 32.68 5.14
965 1131 1.134580 CGACACCTAGTAGTCTCCCGA 60.135 57.143 9.33 0.00 32.68 5.14
966 1132 2.563702 GACACCTAGTAGTCTCCCGAG 58.436 57.143 0.00 0.00 0.00 4.63
967 1133 2.170187 GACACCTAGTAGTCTCCCGAGA 59.830 54.545 0.00 0.00 34.56 4.04
968 1134 2.575279 ACACCTAGTAGTCTCCCGAGAA 59.425 50.000 0.00 0.00 39.48 2.87
969 1135 3.009916 ACACCTAGTAGTCTCCCGAGAAA 59.990 47.826 0.00 0.00 39.48 2.52
970 1136 4.015084 CACCTAGTAGTCTCCCGAGAAAA 58.985 47.826 0.00 0.00 39.48 2.29
971 1137 4.096682 CACCTAGTAGTCTCCCGAGAAAAG 59.903 50.000 0.00 0.00 39.48 2.27
972 1138 3.633065 CCTAGTAGTCTCCCGAGAAAAGG 59.367 52.174 0.00 0.00 39.48 3.11
979 1145 2.125106 CCGAGAAAAGGGAGCGGG 60.125 66.667 0.00 0.00 38.40 6.13
980 1146 2.125106 CGAGAAAAGGGAGCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
981 1147 2.438614 GAGAAAAGGGAGCGGGGC 60.439 66.667 0.00 0.00 0.00 5.80
982 1148 3.256960 AGAAAAGGGAGCGGGGCA 61.257 61.111 0.00 0.00 0.00 5.36
983 1149 2.043953 GAAAAGGGAGCGGGGCAT 60.044 61.111 0.00 0.00 0.00 4.40
984 1150 2.043953 AAAAGGGAGCGGGGCATC 60.044 61.111 0.00 0.00 0.00 3.91
985 1151 2.558380 GAAAAGGGAGCGGGGCATCT 62.558 60.000 0.00 0.00 0.00 2.90
986 1152 2.558380 AAAAGGGAGCGGGGCATCTC 62.558 60.000 0.00 0.00 0.00 2.75
987 1153 4.804420 AGGGAGCGGGGCATCTCA 62.804 66.667 0.00 0.00 0.00 3.27
988 1154 3.797353 GGGAGCGGGGCATCTCAA 61.797 66.667 0.00 0.00 0.00 3.02
989 1155 2.512896 GGAGCGGGGCATCTCAAT 59.487 61.111 0.00 0.00 0.00 2.57
990 1156 1.152881 GGAGCGGGGCATCTCAATT 60.153 57.895 0.00 0.00 0.00 2.32
991 1157 0.108585 GGAGCGGGGCATCTCAATTA 59.891 55.000 0.00 0.00 0.00 1.40
992 1158 1.271597 GGAGCGGGGCATCTCAATTAT 60.272 52.381 0.00 0.00 0.00 1.28
993 1159 2.508526 GAGCGGGGCATCTCAATTATT 58.491 47.619 0.00 0.00 0.00 1.40
994 1160 2.887152 GAGCGGGGCATCTCAATTATTT 59.113 45.455 0.00 0.00 0.00 1.40
995 1161 3.299503 AGCGGGGCATCTCAATTATTTT 58.700 40.909 0.00 0.00 0.00 1.82
996 1162 3.319122 AGCGGGGCATCTCAATTATTTTC 59.681 43.478 0.00 0.00 0.00 2.29
997 1163 3.552890 GCGGGGCATCTCAATTATTTTCC 60.553 47.826 0.00 0.00 0.00 3.13
998 1164 3.005791 CGGGGCATCTCAATTATTTTCCC 59.994 47.826 0.00 0.00 0.00 3.97
999 1165 3.324846 GGGGCATCTCAATTATTTTCCCC 59.675 47.826 0.00 0.00 43.38 4.81
1000 1166 3.966665 GGGCATCTCAATTATTTTCCCCA 59.033 43.478 0.00 0.00 0.00 4.96
1001 1167 4.594491 GGGCATCTCAATTATTTTCCCCAT 59.406 41.667 0.00 0.00 0.00 4.00
1002 1168 5.072193 GGGCATCTCAATTATTTTCCCCATT 59.928 40.000 0.00 0.00 0.00 3.16
1003 1169 6.409579 GGGCATCTCAATTATTTTCCCCATTT 60.410 38.462 0.00 0.00 0.00 2.32
1004 1170 6.707608 GGCATCTCAATTATTTTCCCCATTTC 59.292 38.462 0.00 0.00 0.00 2.17
1005 1171 6.707608 GCATCTCAATTATTTTCCCCATTTCC 59.292 38.462 0.00 0.00 0.00 3.13
1006 1172 7.419403 GCATCTCAATTATTTTCCCCATTTCCT 60.419 37.037 0.00 0.00 0.00 3.36
1007 1173 7.660030 TCTCAATTATTTTCCCCATTTCCTC 57.340 36.000 0.00 0.00 0.00 3.71
1008 1174 7.421684 TCTCAATTATTTTCCCCATTTCCTCT 58.578 34.615 0.00 0.00 0.00 3.69
1009 1175 7.561356 TCTCAATTATTTTCCCCATTTCCTCTC 59.439 37.037 0.00 0.00 0.00 3.20
1010 1176 6.611236 TCAATTATTTTCCCCATTTCCTCTCC 59.389 38.462 0.00 0.00 0.00 3.71
1011 1177 2.919772 TTTTCCCCATTTCCTCTCCC 57.080 50.000 0.00 0.00 0.00 4.30
1012 1178 1.007607 TTTCCCCATTTCCTCTCCCC 58.992 55.000 0.00 0.00 0.00 4.81
1013 1179 0.123266 TTCCCCATTTCCTCTCCCCT 59.877 55.000 0.00 0.00 0.00 4.79
1014 1180 0.123266 TCCCCATTTCCTCTCCCCTT 59.877 55.000 0.00 0.00 0.00 3.95
1015 1181 0.259938 CCCCATTTCCTCTCCCCTTG 59.740 60.000 0.00 0.00 0.00 3.61
1016 1182 1.002857 CCCATTTCCTCTCCCCTTGT 58.997 55.000 0.00 0.00 0.00 3.16
1017 1183 1.359130 CCCATTTCCTCTCCCCTTGTT 59.641 52.381 0.00 0.00 0.00 2.83
1018 1184 2.621668 CCCATTTCCTCTCCCCTTGTTC 60.622 54.545 0.00 0.00 0.00 3.18
1019 1185 2.621668 CCATTTCCTCTCCCCTTGTTCC 60.622 54.545 0.00 0.00 0.00 3.62
1020 1186 1.073098 TTTCCTCTCCCCTTGTTCCC 58.927 55.000 0.00 0.00 0.00 3.97
1021 1187 0.845102 TTCCTCTCCCCTTGTTCCCC 60.845 60.000 0.00 0.00 0.00 4.81
1022 1188 1.541368 CCTCTCCCCTTGTTCCCCA 60.541 63.158 0.00 0.00 0.00 4.96
1023 1189 1.685820 CTCTCCCCTTGTTCCCCAC 59.314 63.158 0.00 0.00 0.00 4.61
1024 1190 1.073319 TCTCCCCTTGTTCCCCACA 60.073 57.895 0.00 0.00 0.00 4.17
1025 1191 1.133809 TCTCCCCTTGTTCCCCACAG 61.134 60.000 0.00 0.00 36.48 3.66
1026 1192 2.283173 CCCCTTGTTCCCCACAGC 60.283 66.667 0.00 0.00 36.48 4.40
1027 1193 2.520458 CCCTTGTTCCCCACAGCA 59.480 61.111 0.00 0.00 36.48 4.41
1028 1194 1.152567 CCCTTGTTCCCCACAGCAA 60.153 57.895 0.00 0.00 36.48 3.91
1029 1195 0.758685 CCCTTGTTCCCCACAGCAAA 60.759 55.000 0.00 0.00 36.48 3.68
1030 1196 1.118838 CCTTGTTCCCCACAGCAAAA 58.881 50.000 0.00 0.00 36.48 2.44
1031 1197 1.484240 CCTTGTTCCCCACAGCAAAAA 59.516 47.619 0.00 0.00 36.48 1.94
1032 1198 2.104622 CCTTGTTCCCCACAGCAAAAAT 59.895 45.455 0.00 0.00 36.48 1.82
1033 1199 3.392882 CTTGTTCCCCACAGCAAAAATC 58.607 45.455 0.00 0.00 36.48 2.17
1034 1200 1.691434 TGTTCCCCACAGCAAAAATCC 59.309 47.619 0.00 0.00 0.00 3.01
1035 1201 1.001974 GTTCCCCACAGCAAAAATCCC 59.998 52.381 0.00 0.00 0.00 3.85
1036 1202 0.544120 TCCCCACAGCAAAAATCCCC 60.544 55.000 0.00 0.00 0.00 4.81
1037 1203 0.835543 CCCCACAGCAAAAATCCCCA 60.836 55.000 0.00 0.00 0.00 4.96
1038 1204 1.055040 CCCACAGCAAAAATCCCCAA 58.945 50.000 0.00 0.00 0.00 4.12
1039 1205 1.419387 CCCACAGCAAAAATCCCCAAA 59.581 47.619 0.00 0.00 0.00 3.28
1040 1206 2.493035 CCACAGCAAAAATCCCCAAAC 58.507 47.619 0.00 0.00 0.00 2.93
1114 1280 2.997897 AGAGGACCACCGCAGACC 60.998 66.667 0.00 0.00 41.83 3.85
1275 1441 1.021390 CCACGCACCAGTTCATCTCC 61.021 60.000 0.00 0.00 0.00 3.71
1355 1521 1.363744 GACAAATCTGGCCTCGAGTG 58.636 55.000 12.31 4.07 0.00 3.51
1404 1570 3.906846 ACCTCAGATCTGTCCTCACTTTT 59.093 43.478 21.92 0.00 0.00 2.27
1470 1636 1.298667 GGTGTCCTACGGCAATGGT 59.701 57.895 0.00 0.00 0.00 3.55
1482 1648 2.405892 GCAATGGTCGCCACATTATC 57.594 50.000 0.50 0.00 36.47 1.75
1545 1711 2.435059 GGAGGAGTCGTTGCAGGC 60.435 66.667 0.00 0.00 0.00 4.85
1719 1885 1.929836 CTGAAGATAGCGTTGCTCCAC 59.070 52.381 0.00 0.00 40.44 4.02
1937 2103 2.415090 GCTTCAGCTTGTACAATGGCAG 60.415 50.000 18.72 12.52 38.21 4.85
1962 2128 3.375299 GTGATACAGTGAGCATTTGGTCC 59.625 47.826 7.25 0.00 41.53 4.46
1986 2152 6.436261 CCTGCATGATTACAACAATGAGATC 58.564 40.000 0.00 0.00 0.00 2.75
2016 2182 4.701956 AAGGCATTCCATTAACTTGTCG 57.298 40.909 0.00 0.00 33.74 4.35
2024 2190 3.008594 TCCATTAACTTGTCGATGGTGGT 59.991 43.478 12.11 0.00 39.95 4.16
2034 2200 0.528466 CGATGGTGGTCACATCCTCG 60.528 60.000 3.40 0.00 41.22 4.63
2095 2261 3.376546 GCTAATTTCCTGCAGAGGTTCTG 59.623 47.826 17.39 1.75 46.90 3.02
2167 2333 2.373169 TGTGAACCAAGAGATCCAAGCT 59.627 45.455 0.00 0.00 0.00 3.74
2216 2382 3.348647 TTCGAGGCATGATTTCTTCCA 57.651 42.857 0.00 0.00 0.00 3.53
2222 2388 3.267812 AGGCATGATTTCTTCCAGAGGAA 59.732 43.478 0.00 0.00 39.66 3.36
2420 2586 7.011389 TCTGTCTAATGAAGTCATAATTTGCGG 59.989 37.037 0.00 0.00 35.10 5.69
2524 2690 3.139397 TGTTTCTCTGTGGGGTTATTGGT 59.861 43.478 0.00 0.00 0.00 3.67
2685 2851 3.670625 TCGTGCTTTAGCTATTGTGGTT 58.329 40.909 3.10 0.00 42.66 3.67
2686 2852 4.069304 TCGTGCTTTAGCTATTGTGGTTT 58.931 39.130 3.10 0.00 42.66 3.27
2687 2853 4.153475 TCGTGCTTTAGCTATTGTGGTTTC 59.847 41.667 3.10 0.00 42.66 2.78
2688 2854 4.083537 CGTGCTTTAGCTATTGTGGTTTCA 60.084 41.667 3.10 0.00 42.66 2.69
2689 2855 5.561919 CGTGCTTTAGCTATTGTGGTTTCAA 60.562 40.000 3.10 0.00 42.66 2.69
2690 2856 6.389906 GTGCTTTAGCTATTGTGGTTTCAAT 58.610 36.000 3.10 0.00 42.66 2.57
2691 2857 6.308766 GTGCTTTAGCTATTGTGGTTTCAATG 59.691 38.462 3.10 0.00 42.66 2.82
2692 2858 6.015519 TGCTTTAGCTATTGTGGTTTCAATGT 60.016 34.615 3.10 0.00 42.66 2.71
2693 2859 6.308766 GCTTTAGCTATTGTGGTTTCAATGTG 59.691 38.462 0.00 0.00 38.32 3.21
2694 2860 4.789012 AGCTATTGTGGTTTCAATGTGG 57.211 40.909 0.00 0.00 38.32 4.17
2695 2861 4.151883 AGCTATTGTGGTTTCAATGTGGT 58.848 39.130 0.00 0.00 38.32 4.16
2706 2872 0.107017 CAATGTGGTAGGGGAGCAGG 60.107 60.000 0.00 0.00 35.85 4.85
2849 3015 6.861065 TGTCATCTTAAGTCAAGTGGTTTC 57.139 37.500 1.63 0.00 35.58 2.78
2858 3024 8.974060 TTAAGTCAAGTGGTTTCTGATAGTTT 57.026 30.769 0.00 0.00 0.00 2.66
2859 3025 7.881775 AAGTCAAGTGGTTTCTGATAGTTTT 57.118 32.000 0.00 0.00 0.00 2.43
2933 3100 2.050144 CACACCCTGCAGACCCTATAT 58.950 52.381 17.39 0.00 0.00 0.86
3110 3277 1.890625 TTCACGGGGGACATGGTACG 61.891 60.000 0.00 0.00 0.00 3.67
3119 3286 0.673644 GACATGGTACGCTGTGCCTT 60.674 55.000 14.48 7.56 39.07 4.35
3120 3287 0.611200 ACATGGTACGCTGTGCCTTA 59.389 50.000 14.48 0.00 39.07 2.69
3121 3288 1.209504 ACATGGTACGCTGTGCCTTAT 59.790 47.619 14.48 1.67 39.07 1.73
3122 3289 1.599071 CATGGTACGCTGTGCCTTATG 59.401 52.381 14.48 8.65 39.07 1.90
3227 3859 0.249911 GAACCGACTCAGCCTGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.741221 CAGGGAGAGCAAACTACCGC 60.741 60.000 0.00 0.00 45.03 5.68
56 57 1.954146 CCCAATACGACGCGATGGG 60.954 63.158 15.93 15.89 40.12 4.00
116 118 7.008086 CGAATGCACTTCATCTTCTTCAATTTC 59.992 37.037 0.00 0.00 33.40 2.17
121 123 4.568956 TCGAATGCACTTCATCTTCTTCA 58.431 39.130 0.00 0.00 33.40 3.02
128 130 3.461061 TGATCCTCGAATGCACTTCATC 58.539 45.455 0.00 0.00 33.40 2.92
181 183 1.738099 CACAGAGCGGGTTTCGAGG 60.738 63.158 0.00 0.00 42.43 4.63
184 186 0.878523 TCAACACAGAGCGGGTTTCG 60.879 55.000 0.00 0.00 42.76 3.46
196 199 5.053811 ACATTACATCACGAACTCAACACA 58.946 37.500 0.00 0.00 0.00 3.72
397 491 8.541133 AAACGAAGAAAACCAAAGAAATGAAA 57.459 26.923 0.00 0.00 0.00 2.69
398 492 8.032451 AGAAACGAAGAAAACCAAAGAAATGAA 58.968 29.630 0.00 0.00 0.00 2.57
399 493 7.543756 AGAAACGAAGAAAACCAAAGAAATGA 58.456 30.769 0.00 0.00 0.00 2.57
400 494 7.755582 AGAAACGAAGAAAACCAAAGAAATG 57.244 32.000 0.00 0.00 0.00 2.32
401 495 8.771920 AAAGAAACGAAGAAAACCAAAGAAAT 57.228 26.923 0.00 0.00 0.00 2.17
402 496 8.491950 CAAAAGAAACGAAGAAAACCAAAGAAA 58.508 29.630 0.00 0.00 0.00 2.52
403 497 7.117092 CCAAAAGAAACGAAGAAAACCAAAGAA 59.883 33.333 0.00 0.00 0.00 2.52
404 498 6.588373 CCAAAAGAAACGAAGAAAACCAAAGA 59.412 34.615 0.00 0.00 0.00 2.52
418 512 7.979115 TGTAGAATGAAAACCAAAAGAAACG 57.021 32.000 0.00 0.00 0.00 3.60
614 713 9.513727 CAAAATAAACCAAAGGAAAAATGTTGG 57.486 29.630 0.00 0.00 45.02 3.77
843 1009 6.238731 CCCTATCTCGCATTAAGCATTTGAAA 60.239 38.462 0.00 0.00 46.13 2.69
844 1010 5.239306 CCCTATCTCGCATTAAGCATTTGAA 59.761 40.000 0.00 0.00 46.13 2.69
845 1011 4.756642 CCCTATCTCGCATTAAGCATTTGA 59.243 41.667 0.00 0.00 46.13 2.69
846 1012 4.083110 CCCCTATCTCGCATTAAGCATTTG 60.083 45.833 0.00 0.00 46.13 2.32
847 1013 4.074970 CCCCTATCTCGCATTAAGCATTT 58.925 43.478 0.00 0.00 46.13 2.32
848 1014 3.073062 ACCCCTATCTCGCATTAAGCATT 59.927 43.478 0.00 0.00 46.13 3.56
849 1015 2.639839 ACCCCTATCTCGCATTAAGCAT 59.360 45.455 0.00 0.00 46.13 3.79
850 1016 2.047061 ACCCCTATCTCGCATTAAGCA 58.953 47.619 0.00 0.00 46.13 3.91
851 1017 2.417719 CACCCCTATCTCGCATTAAGC 58.582 52.381 0.00 0.00 40.87 3.09
852 1018 2.417719 GCACCCCTATCTCGCATTAAG 58.582 52.381 0.00 0.00 0.00 1.85
853 1019 1.071699 GGCACCCCTATCTCGCATTAA 59.928 52.381 0.00 0.00 0.00 1.40
854 1020 0.685097 GGCACCCCTATCTCGCATTA 59.315 55.000 0.00 0.00 0.00 1.90
855 1021 1.451936 GGCACCCCTATCTCGCATT 59.548 57.895 0.00 0.00 0.00 3.56
856 1022 3.151906 GGCACCCCTATCTCGCAT 58.848 61.111 0.00 0.00 0.00 4.73
869 1035 2.040544 CACCGTTGGATCTGGGCAC 61.041 63.158 0.00 0.00 0.00 5.01
870 1036 1.773856 TTCACCGTTGGATCTGGGCA 61.774 55.000 0.00 0.00 0.00 5.36
871 1037 0.394352 ATTCACCGTTGGATCTGGGC 60.394 55.000 0.00 0.00 0.00 5.36
872 1038 2.170607 AGTATTCACCGTTGGATCTGGG 59.829 50.000 0.00 0.00 0.00 4.45
873 1039 3.198068 CAGTATTCACCGTTGGATCTGG 58.802 50.000 0.00 0.00 0.00 3.86
874 1040 3.861840 ACAGTATTCACCGTTGGATCTG 58.138 45.455 0.00 1.09 0.00 2.90
875 1041 4.099573 CCTACAGTATTCACCGTTGGATCT 59.900 45.833 0.00 0.00 0.00 2.75
876 1042 4.369182 CCTACAGTATTCACCGTTGGATC 58.631 47.826 0.00 0.00 0.00 3.36
877 1043 3.431766 GCCTACAGTATTCACCGTTGGAT 60.432 47.826 0.00 0.00 0.00 3.41
878 1044 2.093869 GCCTACAGTATTCACCGTTGGA 60.094 50.000 0.00 0.00 0.00 3.53
879 1045 2.277084 GCCTACAGTATTCACCGTTGG 58.723 52.381 0.00 0.00 0.00 3.77
880 1046 2.967362 TGCCTACAGTATTCACCGTTG 58.033 47.619 0.00 0.00 0.00 4.10
881 1047 3.688694 TTGCCTACAGTATTCACCGTT 57.311 42.857 0.00 0.00 0.00 4.44
882 1048 3.737047 CGATTGCCTACAGTATTCACCGT 60.737 47.826 0.00 0.00 0.00 4.83
883 1049 2.794910 CGATTGCCTACAGTATTCACCG 59.205 50.000 0.00 0.00 0.00 4.94
884 1050 3.555956 CACGATTGCCTACAGTATTCACC 59.444 47.826 0.00 0.00 0.00 4.02
885 1051 3.001330 GCACGATTGCCTACAGTATTCAC 59.999 47.826 0.00 0.00 43.66 3.18
886 1052 3.194861 GCACGATTGCCTACAGTATTCA 58.805 45.455 0.00 0.00 43.66 2.57
887 1053 3.861569 GCACGATTGCCTACAGTATTC 57.138 47.619 0.00 0.00 43.66 1.75
914 1080 2.822701 GATTTGGGCCGGTCGACC 60.823 66.667 25.28 25.28 0.00 4.79
915 1081 2.822701 GGATTTGGGCCGGTCGAC 60.823 66.667 7.13 7.13 0.00 4.20
916 1082 4.460683 CGGATTTGGGCCGGTCGA 62.461 66.667 1.90 0.00 44.87 4.20
938 1104 1.722636 CTACTAGGTGTCGGTCGGCC 61.723 65.000 0.00 0.00 0.00 6.13
939 1105 1.028868 ACTACTAGGTGTCGGTCGGC 61.029 60.000 0.00 0.00 0.00 5.54
940 1106 1.012841 GACTACTAGGTGTCGGTCGG 58.987 60.000 0.00 0.00 0.00 4.79
941 1107 1.932511 GAGACTACTAGGTGTCGGTCG 59.067 57.143 10.38 0.00 38.16 4.79
942 1108 2.287769 GGAGACTACTAGGTGTCGGTC 58.712 57.143 10.38 5.42 38.16 4.79
943 1109 1.064832 GGGAGACTACTAGGTGTCGGT 60.065 57.143 10.38 0.00 38.16 4.69
944 1110 1.677942 GGGAGACTACTAGGTGTCGG 58.322 60.000 10.38 0.00 38.16 4.79
945 1111 1.134580 TCGGGAGACTACTAGGTGTCG 60.135 57.143 10.38 2.33 38.16 4.35
946 1112 2.170187 TCTCGGGAGACTACTAGGTGTC 59.830 54.545 8.71 8.71 31.41 3.67
947 1113 2.194859 TCTCGGGAGACTACTAGGTGT 58.805 52.381 0.00 0.00 31.41 4.16
948 1114 3.278668 TTCTCGGGAGACTACTAGGTG 57.721 52.381 0.00 0.00 37.14 4.00
949 1115 4.271661 CTTTTCTCGGGAGACTACTAGGT 58.728 47.826 0.00 0.00 37.14 3.08
950 1116 3.633065 CCTTTTCTCGGGAGACTACTAGG 59.367 52.174 0.00 0.00 37.14 3.02
951 1117 3.633065 CCCTTTTCTCGGGAGACTACTAG 59.367 52.174 0.00 0.00 44.90 2.57
952 1118 3.267812 TCCCTTTTCTCGGGAGACTACTA 59.732 47.826 0.00 0.00 45.67 1.82
953 1119 2.042706 TCCCTTTTCTCGGGAGACTACT 59.957 50.000 0.00 0.00 45.67 2.57
954 1120 2.454538 TCCCTTTTCTCGGGAGACTAC 58.545 52.381 0.00 0.00 45.67 2.73
955 1121 2.913603 TCCCTTTTCTCGGGAGACTA 57.086 50.000 0.00 0.00 45.67 2.59
956 1122 3.788563 TCCCTTTTCTCGGGAGACT 57.211 52.632 0.00 0.00 45.67 3.24
961 1127 2.125106 CCGCTCCCTTTTCTCGGG 60.125 66.667 0.00 0.00 43.38 5.14
962 1128 2.125106 CCCGCTCCCTTTTCTCGG 60.125 66.667 0.00 0.00 39.79 4.63
963 1129 2.125106 CCCCGCTCCCTTTTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
964 1130 2.438614 GCCCCGCTCCCTTTTCTC 60.439 66.667 0.00 0.00 0.00 2.87
965 1131 2.558380 GATGCCCCGCTCCCTTTTCT 62.558 60.000 0.00 0.00 0.00 2.52
966 1132 2.043953 ATGCCCCGCTCCCTTTTC 60.044 61.111 0.00 0.00 0.00 2.29
967 1133 2.043953 GATGCCCCGCTCCCTTTT 60.044 61.111 0.00 0.00 0.00 2.27
968 1134 3.017581 AGATGCCCCGCTCCCTTT 61.018 61.111 0.00 0.00 0.00 3.11
969 1135 3.483869 GAGATGCCCCGCTCCCTT 61.484 66.667 0.00 0.00 0.00 3.95
970 1136 4.804420 TGAGATGCCCCGCTCCCT 62.804 66.667 0.00 0.00 0.00 4.20
971 1137 2.631012 AATTGAGATGCCCCGCTCCC 62.631 60.000 0.00 0.00 0.00 4.30
972 1138 0.108585 TAATTGAGATGCCCCGCTCC 59.891 55.000 0.00 0.00 0.00 4.70
973 1139 2.191128 ATAATTGAGATGCCCCGCTC 57.809 50.000 0.00 0.00 0.00 5.03
974 1140 2.664402 AATAATTGAGATGCCCCGCT 57.336 45.000 0.00 0.00 0.00 5.52
975 1141 3.552890 GGAAAATAATTGAGATGCCCCGC 60.553 47.826 0.00 0.00 0.00 6.13
976 1142 3.005791 GGGAAAATAATTGAGATGCCCCG 59.994 47.826 0.00 0.00 0.00 5.73
977 1143 3.324846 GGGGAAAATAATTGAGATGCCCC 59.675 47.826 0.00 0.00 45.18 5.80
978 1144 3.966665 TGGGGAAAATAATTGAGATGCCC 59.033 43.478 0.00 0.00 38.76 5.36
979 1145 5.813513 ATGGGGAAAATAATTGAGATGCC 57.186 39.130 0.00 0.00 0.00 4.40
980 1146 6.707608 GGAAATGGGGAAAATAATTGAGATGC 59.292 38.462 0.00 0.00 0.00 3.91
981 1147 8.026396 AGGAAATGGGGAAAATAATTGAGATG 57.974 34.615 0.00 0.00 0.00 2.90
982 1148 8.069979 AGAGGAAATGGGGAAAATAATTGAGAT 58.930 33.333 0.00 0.00 0.00 2.75
983 1149 7.421684 AGAGGAAATGGGGAAAATAATTGAGA 58.578 34.615 0.00 0.00 0.00 3.27
984 1150 7.201947 GGAGAGGAAATGGGGAAAATAATTGAG 60.202 40.741 0.00 0.00 0.00 3.02
985 1151 6.611236 GGAGAGGAAATGGGGAAAATAATTGA 59.389 38.462 0.00 0.00 0.00 2.57
986 1152 6.183361 GGGAGAGGAAATGGGGAAAATAATTG 60.183 42.308 0.00 0.00 0.00 2.32
987 1153 5.905331 GGGAGAGGAAATGGGGAAAATAATT 59.095 40.000 0.00 0.00 0.00 1.40
988 1154 5.467738 GGGAGAGGAAATGGGGAAAATAAT 58.532 41.667 0.00 0.00 0.00 1.28
989 1155 4.326610 GGGGAGAGGAAATGGGGAAAATAA 60.327 45.833 0.00 0.00 0.00 1.40
990 1156 3.206639 GGGGAGAGGAAATGGGGAAAATA 59.793 47.826 0.00 0.00 0.00 1.40
991 1157 2.023015 GGGGAGAGGAAATGGGGAAAAT 60.023 50.000 0.00 0.00 0.00 1.82
992 1158 1.361197 GGGGAGAGGAAATGGGGAAAA 59.639 52.381 0.00 0.00 0.00 2.29
993 1159 1.007607 GGGGAGAGGAAATGGGGAAA 58.992 55.000 0.00 0.00 0.00 3.13
994 1160 0.123266 AGGGGAGAGGAAATGGGGAA 59.877 55.000 0.00 0.00 0.00 3.97
995 1161 0.123266 AAGGGGAGAGGAAATGGGGA 59.877 55.000 0.00 0.00 0.00 4.81
996 1162 0.259938 CAAGGGGAGAGGAAATGGGG 59.740 60.000 0.00 0.00 0.00 4.96
997 1163 1.002857 ACAAGGGGAGAGGAAATGGG 58.997 55.000 0.00 0.00 0.00 4.00
998 1164 2.621668 GGAACAAGGGGAGAGGAAATGG 60.622 54.545 0.00 0.00 0.00 3.16
999 1165 2.621668 GGGAACAAGGGGAGAGGAAATG 60.622 54.545 0.00 0.00 0.00 2.32
1000 1166 1.641192 GGGAACAAGGGGAGAGGAAAT 59.359 52.381 0.00 0.00 0.00 2.17
1001 1167 1.073098 GGGAACAAGGGGAGAGGAAA 58.927 55.000 0.00 0.00 0.00 3.13
1002 1168 0.845102 GGGGAACAAGGGGAGAGGAA 60.845 60.000 0.00 0.00 0.00 3.36
1003 1169 1.229853 GGGGAACAAGGGGAGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
1004 1170 1.541368 TGGGGAACAAGGGGAGAGG 60.541 63.158 0.00 0.00 0.00 3.69
1005 1171 1.133809 TGTGGGGAACAAGGGGAGAG 61.134 60.000 0.00 0.00 35.24 3.20
1006 1172 1.073319 TGTGGGGAACAAGGGGAGA 60.073 57.895 0.00 0.00 35.24 3.71
1007 1173 1.380302 CTGTGGGGAACAAGGGGAG 59.620 63.158 0.00 0.00 38.67 4.30
1008 1174 2.840753 GCTGTGGGGAACAAGGGGA 61.841 63.158 0.00 0.00 38.67 4.81
1009 1175 2.283173 GCTGTGGGGAACAAGGGG 60.283 66.667 0.00 0.00 38.67 4.79
1010 1176 0.758685 TTTGCTGTGGGGAACAAGGG 60.759 55.000 0.00 0.00 38.67 3.95
1011 1177 1.118838 TTTTGCTGTGGGGAACAAGG 58.881 50.000 0.00 0.00 38.67 3.61
1012 1178 2.977772 TTTTTGCTGTGGGGAACAAG 57.022 45.000 0.00 0.00 38.67 3.16
1013 1179 2.103941 GGATTTTTGCTGTGGGGAACAA 59.896 45.455 0.00 0.00 38.67 2.83
1014 1180 1.691434 GGATTTTTGCTGTGGGGAACA 59.309 47.619 0.00 0.00 37.22 3.18
1015 1181 1.001974 GGGATTTTTGCTGTGGGGAAC 59.998 52.381 0.00 0.00 0.00 3.62
1016 1182 1.347062 GGGATTTTTGCTGTGGGGAA 58.653 50.000 0.00 0.00 0.00 3.97
1017 1183 0.544120 GGGGATTTTTGCTGTGGGGA 60.544 55.000 0.00 0.00 0.00 4.81
1018 1184 0.835543 TGGGGATTTTTGCTGTGGGG 60.836 55.000 0.00 0.00 0.00 4.96
1019 1185 1.055040 TTGGGGATTTTTGCTGTGGG 58.945 50.000 0.00 0.00 0.00 4.61
1020 1186 2.104622 AGTTTGGGGATTTTTGCTGTGG 59.895 45.455 0.00 0.00 0.00 4.17
1021 1187 3.392882 GAGTTTGGGGATTTTTGCTGTG 58.607 45.455 0.00 0.00 0.00 3.66
1022 1188 2.035832 CGAGTTTGGGGATTTTTGCTGT 59.964 45.455 0.00 0.00 0.00 4.40
1023 1189 2.676076 CGAGTTTGGGGATTTTTGCTG 58.324 47.619 0.00 0.00 0.00 4.41
1024 1190 1.000843 GCGAGTTTGGGGATTTTTGCT 59.999 47.619 0.00 0.00 0.00 3.91
1025 1191 1.428448 GCGAGTTTGGGGATTTTTGC 58.572 50.000 0.00 0.00 0.00 3.68
1026 1192 1.668628 CGGCGAGTTTGGGGATTTTTG 60.669 52.381 0.00 0.00 0.00 2.44
1027 1193 0.601057 CGGCGAGTTTGGGGATTTTT 59.399 50.000 0.00 0.00 0.00 1.94
1028 1194 1.873270 GCGGCGAGTTTGGGGATTTT 61.873 55.000 12.98 0.00 0.00 1.82
1029 1195 2.340328 GCGGCGAGTTTGGGGATTT 61.340 57.895 12.98 0.00 0.00 2.17
1030 1196 2.750237 GCGGCGAGTTTGGGGATT 60.750 61.111 12.98 0.00 0.00 3.01
1031 1197 4.796495 GGCGGCGAGTTTGGGGAT 62.796 66.667 12.98 0.00 0.00 3.85
1086 1252 2.358932 GGTGGTCCTCTCCATGGTACTA 60.359 54.545 12.58 0.00 39.81 1.82
1164 1330 0.470080 TCTCCCCCACGATCAGATCC 60.470 60.000 4.73 0.00 0.00 3.36
1355 1521 1.210155 GCGGCAAGAACATCCACAC 59.790 57.895 0.00 0.00 0.00 3.82
1404 1570 1.550524 AGCCAGTTCGAGTAGCAATCA 59.449 47.619 0.00 0.00 0.00 2.57
1470 1636 1.378531 GGTTGCAGATAATGTGGCGA 58.621 50.000 0.00 0.00 0.00 5.54
1545 1711 1.445582 GGTGGGCGACGAGTACAAG 60.446 63.158 0.00 0.00 0.00 3.16
1617 1783 4.413520 AGGATGTAGTACTTGGGATTGCAT 59.586 41.667 0.00 0.00 0.00 3.96
1937 2103 4.697352 ACCAAATGCTCACTGTATCACTTC 59.303 41.667 0.00 0.00 0.00 3.01
1962 2128 5.823209 TCTCATTGTTGTAATCATGCAGG 57.177 39.130 0.00 0.00 0.00 4.85
1986 2152 2.189499 GGAATGCCTTAGCGCCCAG 61.189 63.158 2.29 0.00 44.31 4.45
2016 2182 0.824109 TCGAGGATGTGACCACCATC 59.176 55.000 0.00 0.00 0.00 3.51
2024 2190 4.705023 TGTAACTTCTCATCGAGGATGTGA 59.295 41.667 0.00 5.99 40.55 3.58
2034 2200 8.412456 TCAGAGAGAATCATGTAACTTCTCATC 58.588 37.037 20.98 16.88 44.68 2.92
2095 2261 2.113860 TCACAGTGAATAAGCTGGCC 57.886 50.000 0.00 0.00 37.07 5.36
2167 2333 3.117701 TCCTTGAACCAATGTCCAGTGAA 60.118 43.478 0.00 0.00 0.00 3.18
2238 2404 1.905922 GAAAGCGTGTCTGCTGCCTC 61.906 60.000 0.00 0.00 46.60 4.70
2241 2407 1.224069 TGAGAAAGCGTGTCTGCTGC 61.224 55.000 0.00 0.00 46.60 5.25
2242 2408 1.220529 TTGAGAAAGCGTGTCTGCTG 58.779 50.000 0.00 0.00 46.60 4.41
2370 2536 5.488341 TGAACCTAGTGAATTAGGCACTTC 58.512 41.667 3.85 0.00 43.67 3.01
2420 2586 4.886496 AACCAAGAACCCTCTACAGTAC 57.114 45.455 0.00 0.00 0.00 2.73
2468 2634 8.486383 CAGAATCAAAGCTAATATCTCTGAACG 58.514 37.037 5.99 0.00 31.49 3.95
2502 2668 3.139397 ACCAATAACCCCACAGAGAAACA 59.861 43.478 0.00 0.00 0.00 2.83
2524 2690 1.075601 ATCCAAGCCCCTCACAAGAA 58.924 50.000 0.00 0.00 0.00 2.52
2644 2810 3.120442 CGAAGGGACAAACCAAATACGAC 60.120 47.826 0.00 0.00 41.20 4.34
2685 2851 1.281867 CTGCTCCCCTACCACATTGAA 59.718 52.381 0.00 0.00 0.00 2.69
2686 2852 0.911769 CTGCTCCCCTACCACATTGA 59.088 55.000 0.00 0.00 0.00 2.57
2687 2853 0.107017 CCTGCTCCCCTACCACATTG 60.107 60.000 0.00 0.00 0.00 2.82
2688 2854 0.253160 TCCTGCTCCCCTACCACATT 60.253 55.000 0.00 0.00 0.00 2.71
2689 2855 0.692419 CTCCTGCTCCCCTACCACAT 60.692 60.000 0.00 0.00 0.00 3.21
2690 2856 1.306141 CTCCTGCTCCCCTACCACA 60.306 63.158 0.00 0.00 0.00 4.17
2691 2857 1.306226 ACTCCTGCTCCCCTACCAC 60.306 63.158 0.00 0.00 0.00 4.16
2692 2858 1.306141 CACTCCTGCTCCCCTACCA 60.306 63.158 0.00 0.00 0.00 3.25
2693 2859 1.306226 ACACTCCTGCTCCCCTACC 60.306 63.158 0.00 0.00 0.00 3.18
2694 2860 1.901085 CACACTCCTGCTCCCCTAC 59.099 63.158 0.00 0.00 0.00 3.18
2695 2861 1.990060 GCACACTCCTGCTCCCCTA 60.990 63.158 0.00 0.00 34.06 3.53
2706 2872 0.536006 AGGCAACCTTGAGCACACTC 60.536 55.000 0.00 0.00 39.97 3.51
2905 3072 0.322816 CTGCAGGGTGTGTGCCTAAT 60.323 55.000 5.57 0.00 40.43 1.73
2933 3100 2.622470 ACACATATGCACACAACAAGCA 59.378 40.909 1.58 0.00 43.14 3.91
3119 3286 2.034685 GTCGCTCATAGTGGTGCTCATA 59.965 50.000 0.00 0.00 0.00 2.15
3120 3287 1.114627 TCGCTCATAGTGGTGCTCAT 58.885 50.000 0.00 0.00 0.00 2.90
3121 3288 0.173481 GTCGCTCATAGTGGTGCTCA 59.827 55.000 0.00 0.00 0.00 4.26
3122 3289 0.173481 TGTCGCTCATAGTGGTGCTC 59.827 55.000 0.00 0.00 0.00 4.26
3177 3809 3.023479 CATCGAGAGCTCAGCGCG 61.023 66.667 17.77 13.54 45.59 6.86
3227 3859 1.278985 AGGCGGTCATGATGAAACAGA 59.721 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.