>input_sequence_55824
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---------------------------------------------ATTTCCTCTCCCCTTGTTCCCCACAGCAAAAATCC
CCAAACTCGCCGCCGGCCGGGGAGACGGCCACAGGCGGCGTCGCCCCTGCGTAGTACCATGGAGAGGACCACCGCAGACC
CAAGATCGGTGCGCCGCCACCTCTCCTCTCCCGGCGTCGCCCTCCCCGAGGATCTGATCGTGGGGGAGATCCTCGTCCGG
CTTCCGGCCAAGTCGCTCTTCCGGTTCCGTGCGGCCTGCCGCTCCTGGTGCAACCGCACCTCCACGCACCAGTTCATCTC
CTCCTTCGGCCGCAAGCTTCCTCTCGTCGGTCTGTATTCGAACCCCCTGAAAAGCTTACACGACAAATCTGGCCTCGAGT
GTGTGGATGTTCTTGCCGCCGCCAACAACCTCAGATCTGTCCTCACTTTTGATTGCTACTCGAACTGGCTCTGCGCTTCC
TTGGATGGCCTCTTGTTGGTGTCCTACGGCAATGGTCGCCACATTATCTGCAACCCTGCCACCCGGCAATCGATCCCGCT
CCCTCAGCTCACCGGAGGAGTCGTTGCAGGCTTGTACTCGTCGCCCACCGCCGACAGGGGCGTGGAGTACCGTACTCTGT
TTTCCAAGGGAAGACTCCCCATATGCAATCCCAAGTACTACATCCTCACCGTCGGCTCACCAATGGAGCCCAGACCCGTC
CAGCTGCCTGAGGAACCCGACAATCTGAAGATAGCGTTGCTCCACGGCATCAACGATCCCACTCCAAGCCTGTGCCATCG
GCCAACAGTTATGCTCAACAGCTGTCTTCACTGGGTGCCAGAGTCATGCCGTCATGACAAAGTGGTTGTTTTCGATACGG
TGGCCGAGTCATTCAGATCCATTCAATCTCCGACTGCCGCCCAAGAAAATACTCGCTTGTTTGAGATGGGCAGTCAGCTT
GGCTTCAGCTTGTACAATGGCAGAAGTGATACAGTGAGCATTTGGTCCCTGCATGATTACAACAATGAGATCTGGGCGCT
AAGGCATTCCATTAACTTGTCGATGGTGGTCACATCCTCGATGAGAAGTTACATGATTCTCTCTGACAAAGGCGATGTGC
TAATTTCCTGCAGAGGTTCTGGCCAGCTTATTCACTGTGATACTGAAGCAAATGTACTGAACCAGTTAACATGTGAACCA
AGAGATCCAAGCTTCACTGGACATTGGTTCAAGGAGAACATTTCGAGGCATGATTTCTTCCAGAGGAAAAAAGGGCAGCG
CCTGAGGCAGCAGACACGCTTTCTCAAAGGCCTCTAA-------------------------------------------
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>chr1B_1_TraesCS1B01G046800
GCGACTATTTCTCGCTTTAAACGAGGCGGTAGTTTGCTCTCCCTGAAGGTTTTCCCCCCATCGCGTCGTATTGGGCTGGC
CCATTCGCGCGTGCGTAGGTAGTAAAAATAGCACAA-GAAATTGAAGAAGATGAAGTGCATTCGAGGATCAAACCCGGGT
CTCCTTGATAGGAGATAGCGACCCTCGAAAC-CCGCTCTGTGTTGAGTTCGTGATGTAATGTAGGGCGCGACCTACTTAA
TGTAAAAGAGACGATTTTCTCCACCATTTTTTGT-TTTTATTTAGTTTTCTTCATATTTT--------------------
--------TTTGTTTTCTTTTGTTTCTTTTCTTTTTTTCTCTGCTTTTTCATTTTTTTCATTTGTTTCTTCATTTCTTTT
CTTTGGTTTATTTTGTTTCTTTTTCA------------------------------------------------------
--------TTTTTCATTTCTTTGGTTTTCTTCGTTTCTTTTGGTTTTCATTCTACA-TGTTCTGTATATGTCAACAACAT
TTTTCTTACACAAGTTTAACAC-TTTTCCAGTACAAATTTAAC-ATTTTTGTAATATGTGGTCAACATATTTTCTATACA
CGTTTTTCAACATTTTT-AAATCCTTGATTAATATTTTTCAAATAGAAGATTAATTTTTTTTGAAT-CATGACCAACATT
TTTCCTTTGGTTTATTTTGTTTATTTTTCGATTTTCA-TTTTCTTGGTTTTTCTTTGTTAATTTTTGTTTTTCATTCTAA
ATTCTTATATACTTGTTCAAAATTTTC-----------------------------------------------------
-------------CAAATACCTCTTCAAAAAATTTTAAACACATGATCGACATTTTTTCAAATACTTGTTCAAGATTTTT
TTTTCAAATGCTTTTCAACATTTTTTTAAATACTTGTTCAACATTTTTTTTCAAATGCTTAATGCGAGATAGGGGTGCCC
AGATCCAACGGTGAATACTGTAGGCAATCGTGCGGCTGCGGTCGACCGGCCCAAATCCGGGACGGCCGACCGACACCTAG
TAGTCTCCCGAGAAAAGGGAGCGGGGCATCTCAATTATTTTCCCCATTTCCTCTCCCCTTGTTCCCCACAGCAAAAATCC
CCAAACTCGCCGCCGGCCGGGGAGACGGCCACAGGCGGCGTCGCCCCTGCGTAGTACCATGGAGAGGACCACCGCAGACC
CAAGATCGGTGCGCCGCCACCTCTCCTCTCCCGGCGTCGCCCTCCCCGAGGATCTGATCGTGGGGGAGATCCTCGTCCGG
CTTCCGGCCAAGTCGCTCTTCCGGTTCCGTGCGGCCTGCCGCTCCTGGTGCAACCGCACCTCCACGCACCAGTTCATCTC
CTCCTTCGGCCGCAAGCTTCCTCTCGTCGGTCTGTATTCGAACCCCCTGAAAAGCTTACACGACAAATCTGGCCTCGAGT
GTGTGGATGTTCTTGCCGCCGCCAACAACCTCAGATCTGTCCTCACTTTTGATTGCTACTCGAACTGGCTCTGCGCTTCC
TTGGATGGCCTCTTGTTGGTGTCCTACGGCAATGGTCGCCACATTATCTGCAACCCTGCCACCCGGCAATCGATCCCGCT
CCCTCAGCTCACCGGAGGAGTCGTTGCAGGCTTGTACTCGTCGCCCACCGCCGACAGGGGCGTGGAGTACCGTACTCTGT
TTTCCAAGGGAAGACTCCCCATATGCAATCCCAAGTACTACATCCTCACCGTCGGCTCACCAATGGAGCCCAGACCCGTC
CAGCTGCCTGAGGAACCCGACAATCTGAAGATAGCGTTGCTCCACGGCATCAACGATCCCACTCCAAGCCTGTGCCATCG
GCCAACAGTTATGCTCAACAGCTGTCTTCACTGGGTGCCAGAGTCATGCCGTCATGACAAAGTGGTTGTTTTCGATACGG
TGGCCGAGTCATTCAGATCCATTCAATCTCCGACTGCCGCCCAAGAAAATACTCGCTTGTTTGAGATGGGCAGTCAGCTT
GGCTTCAGCTTGTACAATGGCAGAAGTGATACAGTGAGCATTTGGTCCCTGCATGATTACAACAATGAGATCTGGGCGCT
AAGGCATTCCATTAACTTGTCGATGGTGGTCACATCCTCGATGAGAAGTTACATGATTCTCTCTGACAAAGGCGATGTGC
TAATTTCCTGCAGAGGTTCTGGCCAGCTTATTCACTGTGATACTGAAGCAAATGTACTGAACCAGTTAACATGTGAACCA
AGAGATCCAAGCTTCACTGGACATTGGTTCAAGGAGAACATTTCGAGGCATGATTTCTTCCAGAGGAAAAAAGGGCAGCG
CCTGAGGCAGCAGACACGCTTTCTCAAAGGCCTCTAAGAAGGTAATCCCCATTTCTCGATGCGTACATGCCTCTTTCCGT
CTTTACATATCGCTTTTCTGCCTTTGGCTAATTTGAATCATTAGTTTATTCATATGAAGTGCCTAATTCACTAGGTTCAT
CTGTCTAATGAAGTCATAATTTGCGGTACTGTAGAGGGTTCTTGGTTTCTGTGGACTTGGTGCTCCAATTTTTCGTTCAG
AGATATTAGCTTTGATTCTGAATTCTCTGTTTCTCTGTGGGGTTATTGGTTCTTGTGAGGGGCTTGGATTCTTGTTCAGA
CATACTAGCTCTTATTCCGAATTTTTCCAAAATAATTGTTGAAGAACAGGACATGGAGGACCTGAAACCTCTTCAGGAAG
GTGTCCCTTGTCGTATTTGGTTTGTCCCTTCGTGCTTTAGCTATTGTGGTTTCAATGTGGTAGGGGAGCAGGAGTGTGCT
CAAGGTTGCCTTTACTGGAGCTGTCTGTTTGATTAGCGTGAATGGGGAGAACTGACTTCTTTGTGACATATATTATACAG
AAACAGCGTACATCCTATAAATTCTAAACTATGTCATCTTAAGTCAAGTGGTTTCTGATAGTTTTTTTTTTTGCGTGGAT
GGTTTT-GATAGTTATTATATATTCCCATACATTAGGCACACACCCTGCAGACCCTATATGCTTGTTGTGTGCATATGTG
TTGTTCTGGATGTCTTTATCGAATATGAATGTAGTTTACACAATGTACCTTTTGGTTCCCAAATGAACAGGACCTGTGAT
ATTTCAAATTCCCATATCATTGTAGAGTCATTAAGTTAGGAAAGTGATATTGTCAGCTTCACGGGGGACATGGTACGCTG
TGCCTTATG-----------------------------------------------------------------------
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--------------------------------------------------------------------------AGCACC
ACTATGAGCGACACGTCCGCTTCAGCTTTGTGCCACCATCCCGTGGGTCGCGCTGAGCTCTCGATGGTTGAGTCGATGCG
AACCGACTCAGCCTGTTGTCTGTTTCATCATGACCGCCTAACGGGTCCGCTTGGGAAGGTGCC
>chr1B_1
GCGACTATTTCTTGCTTTAAATGAGCTGGTAGTTTGCTCTCCCTGAAAGTTTTCCCTCCATCGCGTCGTATTGGGCTGGC
GTATTCGTGCGTGCGTAGGTAGTAAAAATAGCACAA-AAAATGGAAGAAAATGAAGTGCATTCGAGGATCAAACCCGGGT
CTCCTTGATAGGAGATAGCGACGCTTGAAAC-CCGCTCGGTGTTGAGTTCGTGATGTAATGTAGGGTGCGACCTACTTAA
TGTAAAAGAGACGATTTTCTCCACCGTTTTTTCCTGTTCTATCAGTTTTCTCCACATTTT--------------------
--------TTTGTTTTCTTTTGTTTCATTC------TTTTCCGCTCTTTCATTTTTTTCATTTGTTTCTTCATT--TTTT
CTTTGGTTTATTTTGTTTCTTTTTCA------------------------------------------------------
--------TT--------CTTTGGTTTTCTTTGTTTCTTTTGGTTTTCATTCTA-ATTTTTTTGTATATGTCAACAACAT
TTTTCTTATACAAGTCTAACAC-TTTTCCAATACAAGTTTAAC-ATTTTT-AAATATGTGGTCAACATTTTTTCTATGCA
CTTTTTCCAACAATATTCAAATGCTTGATTAATATTTTTCAAATGCAAGACTAATTTTTTTTGAAT-CATGGTCAACATT
TTTCCTTTGGTTTAATTTATTTCTTTTTTGGGTTTCATTTTTTTTGGTTTTTCTTTGTTTCCTTT--TTTTTCATTCTAA
ATTCTTATATACTTGTTCAAAATTTTC-----------------------------------------------------
-------------CAAAAACCTCTTCAAAAAATTT-AAACACATGATCGACATTTTTTCAAATACTTGTTCAAGATT---
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>chr5B_1
GCGACTA-TTTTCGCTTTAAGCTAGCCGGTAGTTTGCTCTCGCTAAAGGTTTTCCCTCCATCGCGTCATATTGGACCGGC
CCATTCACACACGTGTA-GTTGTAAAAATAGCAAATGAATATGGAAGAAAATGAAATGCAACCGGGGATCAAACCCGGAT
CTCCTCCATAGGAGATAGCGGCGCTAGCGACTCCGCTCCGTGCTGAGTTCGTGATGC-----AGGGCGCGACCTACTTAA
TGTAAAAGAGCCGATTTTCTCCAACGTTTTTTCTGTTTTATTCAGTTTTCTCCATGTTTTACTTTGTTTATTTTCTCTTT
TTTCTCCGTTTTTTTTCATTTTTTTATTTT------TATTCAT--------TTTTTTGCATTTGTTTCTTCAGT--TTTT
TCTTTG-TTATTTTGTTTCTTTTTTTTAT---------------------------------------------------
--------TT--------CCTTGCTTTTCTTAGTTTGTTTTGGTTTTCATTCTACA-TTTTTTGTATATTTCAACAACAT
TTTTCTGATAAAAGTTTAACACTTTTTTCAGTACAAGTTTAAC-ATTTCTGTACTATGTGTTTAACATTTTTTCTACACA
CGTTTTTCAT----------------------TATTTTTCAAATGCAAGATTAACATTTTTTTAGTACATGGACAACATT
TTTCCTTTGTTTTATTTTGTTTGTTTTTCGGTTTTCTTTTGTTTGG-----------------TT--TTTTTCATTCTAC
ATTCTTATATACATGATCACCAT-------------------------------------------TTTTCTAAATACCC
ATTCAATATATTT-AAATACTTGTTCAATATT-TTTATATACATGATCAACATTTTTTCAAATGCTTGTTCAATAA----
---------------------TTTTTAAAATACTTGTTCAACATTTTT--------------------------------
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>chr2B_296
TTTTTATT------------------------------------------------------------------------
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--------------------------------------------------------------------TTCTTTCCTTTT
CTTTGGTTTTATTTATTTCTTTTCATGGTTCTCATTGGTTATTTTGTTTTATTTTTCCAATGTTTTGCTCCCTTTTTTTG
TTTTTCACTT--------CTTTGGTTTTCTTTGTTTCTTTTGGTTTTCATTCTATATTTTTTTGCATATGTCAACAACTT
TTGTA--ATACAAGTTTAACAC-TTTTTGAATACAAATTTAACAATTTTT-TAATATGTGGTCAATATTTTTTCTATACA
CGTTTTTCAACATTTTTCAAAAGCTTGATGAACATTTTTAAAATACAAGATTAACATTTTTTGAATAGATGGTCAACATT
TTTCCTTTGCTTTATTTTGTTTCTTTTTCAGTTTCA----TTTATCGTTATTCTTTCTA---TTT--CTTTTCATTCTAC
ATTCTTATATACATGATCTACATATTTTTAAAAATTGTTCTAAAAAATTCAAATACATGTTCGACATTTTTAAAATACAT
GTTCAACATATTTCAAATACTTGTTCAACATA-TTTATATACAATATCAACATTTTTT----------------------
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>chr1D_1042
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------TCGCCGCCGGCCGGGGAGACGGCCACAGGCGGCGCCGCCCCTGCGGAGTACCATGGAGAGGACCACCGCAGACA
CAAGATCGGTGCGCCGCCACCTCTCCTCTCCCGGCGTCACCCTCCCCGACGATCTGATCGTGGGGGAGATCCTCGTCCGG
CTTCCGGCCAAGTCGCTCTTCCGGTTCCGTGCGGCGTGCCGCTCCTGGTGCAGCCGCACCTCCACGCACCAGTTCATCTC
TTCCTTCGGCCGCAAGCTTCCTCTCGTCGGTCTGTATTCGAACCCCCTGAAAAGCTTACACGACAAATCTGGCCTCGAGT
CTGTGGATGTTCTTGCCGCCGCCAACAACCTCAGATCTGTCCTCACTTTCGATTGCTACTCGAACTGGCTCTGCGCTTCC
TTGGATGGCCTCTTGTTGGTGTCCTACGGCAATGGCCGCCACACCATTTGCAACCCTGCCACCCGGCAATCGATCCCGCT
CCCTCAGCTCACCGGAGGAGTCGTTGCAGGGTTGTACTCGTCGCCCACCGCCGACAGGGGCGTGGAGTACCGTACTCTGT
TTTCCAAGGGAAGACTCCCCATGTGCAATCCCAAGTACTACATCCTCACCGTCGGCTCACCAATGGAGCCCAGACCCGTC
CAGCTGCCTGAGGAACCCGACAATCTGAAGATAGCGTTGCTCCATGGCATCAACGATCCCACTCCAAGCCTGTGCCATCG
GCCAACAGTTATGCTCAACAGCTGTCTTCACTGGGTGCCAGAGTCATGCCGTCATGACAAAGTGGTTGTTTTCGATACGG
TGGCCGAGTCATTCAGATCCATTCAATCTCCGACTGCCGCCCAAGAAAATACTCGCTTGTTTGAGATGGGCAGTCAGCTT
GGCTTCAGCTTGTACAATGGCACAAGTGATACAGTGAGCATTTGGTCGCTGCATGATTACAACAATGAGATGTGGGCGCT
AAGGCATTCCATTAACTTGTCAATGGTGG-CACATCCTCAATGAGAAGTTACATGATTCTCTCTGACAAAGGCGATGTGC
TAATTTCCTGCAGAGGTTCTAGCCAGCTTATTCACTGTGATACTGAAGCAAATGTACTGAACCAGTTAACATGTGAACCA
AGAGATCCAAGCGTCACTGGACATTGGTTCAAGGAGAACATTTCGAGGCATGATTTCTTCCCGAGGAGAAAAGGGCAGCG
CCTTAGAGAGCAGACACGCTTTCTCAAAGGCCTCTAAGAAGGTAATCCCCATTTCTCGATGCGTACATGCCTCTTTCCGT
CTTTACATATCGCTTTTCTGCCTTTGGCTAATCTGAATCATTAGTTTATTCATATAAAGTGCCTAATTCACTAGGTTCAT
CTGTCTAATGAAGTCATAATTTGCGATACTGTAGAGGGTTCTTGGTTTCTGTGGACTTGGTGCTCCAATTTTTGGTTCAG
AGATATTAGCTTTGATTCTGAATTCTCGGTTTCTCTGTGGGGTTATTGGCTCTTGTGAGGGGCTTGGATTCTTGTTCAGA
CATACTAGCTCTTATTCCGAATTTTTCCAAAATAATTGTTGAAGAACAGGACATGGAGGACCTGAAACCTCTCCAGGAAG
GTGTCCCTTCTCGTATTTGGTTTGTCCCTTCGTGCTTTAGCTATTGTGGT-----------AGGGGAGCAGTAGTGTGCT
CAAGGTTGCCTTTACTGGAGCTGTCTGTTTGATTAGCGTGAATGGGGAGAACTGACTTCTTTGTGACATATATTATACAG
AAACAGCGTACATCCTATAAATTCTAAACTATGTCATCTTAAGTCAAGTGGTTTTTGATAGTTC-TTTTTTTGCGTGGAT
GGTTTTTGATAGTTATTATATATTCCCATACGTTAGGCACACACCCTGCAGACCCTATACGCTTGTTGTGTGCATATGTG
TTGTTCTGGATGTCTTTATCGAATATGAATGTAGTTTACACAATGTACCTTTTGGTTCCCAAATGAACAGGACCTGTGAT
ATTTCAAATTCCCATATCATTGTAGAGTCATTAAGTTAGGAAAGTGATATTGTCAGCTTCACGGGGGACATGGTACACTG
TGCCTGCAATAATGCCCCGAAGCAGGCACCACCGAACCAAGCAGTGCATCTTTGTGAAGTCAGGCCAATGAGAACGTCAA
GACCAAGATCTAGGTTAGGAAGGAAAAGCTTTAAGGGCGTGCTCGGGATACACTCGAGCATAATTCCCTCGACCAATGTG
GGCAAGGCGCTACCCCCAAACATGAAAATTCCGACAACATCATTCAGGAGGAGGCGCACAGGGCCCACCCCGAGCATCTT
CAACGCCCTCGAGCAGCAGCTCAACTCTAGCGGGGCATTCAATGCAAGGCTTGCGCAGCTCTTTTTGAGTTCCAAAGGTT
GACCGACGCGATGAATGCACGCATGCACACCTATGATGGCCTACACATCGTAGGCATCCATCACAAGTCTATAGTTTGAC
GGTTTGTCTCGTCCCGAGGCGATAGCACTTGAAGCTTATCAATGGATGTGACGGGCACCCCTCCTTTTGACTTTAGCACC
ACTATGAGCGACACGTCCGCTTCAGCTTTGTGCCACCATCCCGTGGGTTGCGCTGAGCTCTCGATGGTTGAGTCGATGCG
AACCGACTCAGCCTGTTGCCTGTTTCATCATGACCGCCTAACGGGTCCGCTTGGGAAGGTGCC
>SNPs
-------------------------S------------------------------S-----------------------
-------------------------------------S----S------S------------------------------
----------------------S--S------------S-----------------------------------------
-------------------------S------S---------S--------S----------------------------
------------------------------SSSSSS--S--S---S----------------------------S-----
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----------SSSSSSSS-------------S--------------------------S--S------------------
--------S-----------------------------------------------------------S-----------
----------------------S----------------------S-------------------------SS-------
----------------------S-------S-----------S----------------SSS---SS-------------
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-----------------------------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSS-----S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------------------S----------S---------------------------S
--------------------------------------S----------S------------------------------
-----------------------------------S----------------S---------------------------
S-------------------------------------------------------------------------------
S------------------------------------------------S------------------------------
-----------------------------------S-------SS--S--------------------------------
------------------------------S-------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------S-----------------------------------
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----------------------S------------------------S-----------------------S--------
---------------------S-------S---------S----------------------------------------
--------------------S-----------------------------------------------------------
------------S------------------------------------------------S-----S------------
---S--SS------------------------------------------------------------------------
--------------------------------S----------------------S------------------------
-------------------------S-----------------------------------------------S------
---------------------------S---------------------S------------------------------
------------------------------------------------------------------------S-------
---------S----------------------------------------SSSSSSSSSSS----------S--------
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------------------------------------------------------S--------SS---------------
-------------------------------S---------------------------S--------------------
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----------------------------------------------------------------------------S---
-----SSSS-----------------------------------------------------------------------
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------------------------------------------------S-------------------------------
------------------S--------------------------------------------
>forward_1157
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-----------------GGAGCGGGGCATCTCAATTA-------------------------------------------
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>reverse_2853
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----------------------------------------------------CAATGTGGTAGGGGAGCAGG--------
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