Multiple sequence alignment - TraesCS1B01G040700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G040700 chr1B 100.000 3821 0 0 1 3821 20166177 20169997 0.000000e+00 7057.0
1 TraesCS1B01G040700 chr1B 95.556 45 2 0 746 790 367528645 367528689 5.290000e-09 73.1
2 TraesCS1B01G040700 chrUn 92.080 1048 53 5 1564 2590 9841488 9840450 0.000000e+00 1448.0
3 TraesCS1B01G040700 chrUn 86.640 1018 80 24 2847 3820 9840221 9839216 0.000000e+00 1075.0
4 TraesCS1B01G040700 chrUn 86.519 586 43 17 955 1517 9842155 9841583 2.520000e-171 612.0
5 TraesCS1B01G040700 chrUn 93.750 48 3 0 2749 2796 9840275 9840228 5.290000e-09 73.1
6 TraesCS1B01G040700 chrUn 93.750 48 3 0 2591 2638 9840367 9840320 5.290000e-09 73.1
7 TraesCS1B01G040700 chr1A 87.776 998 60 25 914 1873 15186468 15187441 0.000000e+00 1110.0
8 TraesCS1B01G040700 chr1A 91.413 757 37 5 1910 2645 15187525 15188274 0.000000e+00 1013.0
9 TraesCS1B01G040700 chr1A 86.899 832 53 19 3021 3820 15188478 15189285 0.000000e+00 881.0
10 TraesCS1B01G040700 chr1A 87.440 207 24 2 414 619 15184775 15184980 1.770000e-58 237.0
11 TraesCS1B01G040700 chr1A 90.000 120 10 2 2847 2966 15188366 15188483 1.840000e-33 154.0
12 TraesCS1B01G040700 chr1A 90.678 118 4 6 164 278 15183976 15184089 2.380000e-32 150.0
13 TraesCS1B01G040700 chr1A 83.133 166 23 5 278 441 70903000 70902838 3.080000e-31 147.0
14 TraesCS1B01G040700 chr1A 87.097 124 7 4 1 116 15183541 15183663 8.610000e-27 132.0
15 TraesCS1B01G040700 chr1A 92.157 51 4 0 2746 2796 15188309 15188359 5.290000e-09 73.1
16 TraesCS1B01G040700 chr1D 90.346 549 34 11 1928 2458 14204095 14204642 0.000000e+00 702.0
17 TraesCS1B01G040700 chr1D 87.770 139 8 3 1 131 14202442 14202579 1.840000e-33 154.0
18 TraesCS1B01G040700 chr1D 86.364 110 6 5 336 440 341509982 341510087 1.120000e-20 111.0
19 TraesCS1B01G040700 chr5D 86.061 165 20 2 278 440 449500602 449500439 1.410000e-39 174.0
20 TraesCS1B01G040700 chr7B 81.988 161 26 3 281 439 97197011 97196852 2.390000e-27 134.0
21 TraesCS1B01G040700 chr4D 81.761 159 16 6 284 440 363586481 363586334 1.860000e-23 121.0
22 TraesCS1B01G040700 chr4D 92.857 56 2 1 735 790 226827148 226827095 3.160000e-11 80.5
23 TraesCS1B01G040700 chr2A 79.641 167 26 6 278 440 743546196 743546034 3.120000e-21 113.0
24 TraesCS1B01G040700 chr7D 74.132 317 46 25 164 450 14668866 14668556 8.740000e-17 99.0
25 TraesCS1B01G040700 chr7D 89.655 58 4 1 733 790 228851617 228851672 5.290000e-09 73.1
26 TraesCS1B01G040700 chr3B 77.976 168 20 8 276 440 250802488 250802335 5.260000e-14 89.8
27 TraesCS1B01G040700 chr3D 82.524 103 13 5 335 432 112705609 112705711 6.800000e-13 86.1
28 TraesCS1B01G040700 chr3D 95.652 46 2 0 745 790 183784714 183784669 1.470000e-09 75.0
29 TraesCS1B01G040700 chr3D 93.478 46 3 0 745 790 483701354 483701309 6.850000e-08 69.4
30 TraesCS1B01G040700 chr2D 93.478 46 3 0 745 790 164862125 164862080 6.850000e-08 69.4
31 TraesCS1B01G040700 chr4A 93.333 45 3 0 745 789 351319965 351319921 2.460000e-07 67.6
32 TraesCS1B01G040700 chr5A 91.489 47 4 0 744 790 264504077 264504123 8.860000e-07 65.8
33 TraesCS1B01G040700 chr2B 91.304 46 4 0 745 790 557707639 557707594 3.190000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G040700 chr1B 20166177 20169997 3820 False 7057.0000 7057 100.0000 1 3821 1 chr1B.!!$F1 3820
1 TraesCS1B01G040700 chrUn 9839216 9842155 2939 True 656.2400 1448 90.5478 955 3820 5 chrUn.!!$R1 2865
2 TraesCS1B01G040700 chr1A 15183541 15189285 5744 False 468.7625 1110 89.1825 1 3820 8 chr1A.!!$F1 3819
3 TraesCS1B01G040700 chr1D 14202442 14204642 2200 False 428.0000 702 89.0580 1 2458 2 chr1D.!!$F2 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 1488 0.114954 ACATGTTCATTGGCCACCCT 59.885 50.0 3.88 0.0 0.00 4.34 F
1674 4168 0.027586 GCGACATTGTTATCGGTGGC 59.972 55.0 0.00 0.0 38.78 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2796 5442 0.036952 AGGTCTCCTGTGTTGATGCG 60.037 55.0 0.0 0.00 29.57 4.73 R
3070 5716 0.393537 GGAACCAGAGAGGCACATGG 60.394 60.0 0.0 4.97 43.14 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.149196 TCTGTTTTTGACTGATGGGCTC 58.851 45.455 0.00 0.00 32.07 4.70
126 139 2.970324 GTTCCTGCGTCAACGGCA 60.970 61.111 4.54 2.54 40.23 5.69
140 153 2.421739 GGCACGCCATAGTCCGAT 59.578 61.111 2.36 0.00 35.81 4.18
142 155 1.067416 GCACGCCATAGTCCGATGA 59.933 57.895 0.00 0.00 0.00 2.92
143 156 0.941463 GCACGCCATAGTCCGATGAG 60.941 60.000 0.00 0.00 0.00 2.90
144 157 0.941463 CACGCCATAGTCCGATGAGC 60.941 60.000 0.00 0.00 0.00 4.26
145 158 1.730902 CGCCATAGTCCGATGAGCG 60.731 63.158 8.09 8.09 38.88 5.03
146 159 1.660355 GCCATAGTCCGATGAGCGA 59.340 57.895 0.00 0.00 44.57 4.93
147 160 0.664767 GCCATAGTCCGATGAGCGAC 60.665 60.000 0.00 0.00 44.57 5.19
148 161 0.386100 CCATAGTCCGATGAGCGACG 60.386 60.000 0.00 0.00 44.57 5.12
156 169 4.473520 ATGAGCGACGGGGCCAAG 62.474 66.667 4.39 0.22 0.00 3.61
161 174 4.338710 CGACGGGGCCAAGGGAAA 62.339 66.667 4.39 0.00 0.00 3.13
162 175 2.361230 GACGGGGCCAAGGGAAAG 60.361 66.667 4.39 0.00 0.00 2.62
165 451 1.533033 CGGGGCCAAGGGAAAGTTT 60.533 57.895 4.39 0.00 0.00 2.66
174 460 3.373748 CCAAGGGAAAGTTTTGTGCAAAC 59.626 43.478 0.00 0.00 44.73 2.93
199 485 1.608590 ACAAATGTTCTCGGTGCTTGG 59.391 47.619 0.00 0.00 0.00 3.61
210 497 3.911868 TCGGTGCTTGGAAATTTTCATG 58.088 40.909 11.09 3.96 0.00 3.07
212 499 3.667360 GGTGCTTGGAAATTTTCATGCT 58.333 40.909 28.11 0.00 35.78 3.79
241 528 5.821516 ACATTTGTGAAAGTCGTGGTAAA 57.178 34.783 0.00 0.00 0.00 2.01
242 529 6.197364 ACATTTGTGAAAGTCGTGGTAAAA 57.803 33.333 0.00 0.00 0.00 1.52
243 530 6.262601 ACATTTGTGAAAGTCGTGGTAAAAG 58.737 36.000 0.00 0.00 0.00 2.27
248 535 7.090953 TGTGAAAGTCGTGGTAAAAGAAAAT 57.909 32.000 0.00 0.00 0.00 1.82
265 560 4.827284 AGAAAATCGACACTCCCAAAATGT 59.173 37.500 0.00 0.00 0.00 2.71
303 627 8.110860 ACTTCCACGAATGTTATTTTGAGATT 57.889 30.769 0.00 0.00 0.00 2.40
322 646 8.519492 TGAGATTAAAATTTGCAAGCACTAAC 57.481 30.769 0.00 0.00 0.00 2.34
330 654 9.881529 AAAATTTGCAAGCACTAACAAAATATG 57.118 25.926 0.00 0.00 35.79 1.78
333 657 6.324561 TGCAAGCACTAACAAAATATGTCA 57.675 33.333 0.00 0.00 42.99 3.58
347 671 7.335422 ACAAAATATGTCAAAAGTTTGCACCAA 59.665 29.630 9.91 0.00 37.96 3.67
349 673 7.856145 AATATGTCAAAAGTTTGCACCAAAA 57.144 28.000 0.00 0.00 35.03 2.44
350 674 7.856145 ATATGTCAAAAGTTTGCACCAAAAA 57.144 28.000 0.00 0.00 35.03 1.94
352 676 6.566197 TGTCAAAAGTTTGCACCAAAAATT 57.434 29.167 0.00 0.00 35.03 1.82
354 678 7.080724 TGTCAAAAGTTTGCACCAAAAATTTC 58.919 30.769 0.00 0.00 36.59 2.17
355 679 7.080724 GTCAAAAGTTTGCACCAAAAATTTCA 58.919 30.769 0.00 0.00 36.59 2.69
356 680 7.271008 GTCAAAAGTTTGCACCAAAAATTTCAG 59.729 33.333 0.00 0.00 36.59 3.02
412 736 7.148018 GGAATTTATTGTTCATCCTGAGCTCAA 60.148 37.037 18.85 3.88 0.00 3.02
413 737 7.707624 ATTTATTGTTCATCCTGAGCTCAAA 57.292 32.000 18.85 9.43 0.00 2.69
433 757 1.038130 TGAGCTCGGGAGTAGAAGGC 61.038 60.000 9.64 0.00 0.00 4.35
487 811 7.046033 CCTATAAAGAATGTTTGAGTACCCGT 58.954 38.462 0.00 0.00 0.00 5.28
491 815 3.056035 AGAATGTTTGAGTACCCGTCTCC 60.056 47.826 0.00 0.00 0.00 3.71
494 818 1.891150 GTTTGAGTACCCGTCTCCTGA 59.109 52.381 0.00 0.00 0.00 3.86
507 831 2.219325 CTCCTGAGAGCTTTCGCGGT 62.219 60.000 6.13 0.00 42.32 5.68
510 834 2.178521 GAGAGCTTTCGCGGTCGA 59.821 61.111 6.13 0.00 43.89 4.20
543 867 2.491152 CATCCATTGCACGGTGGC 59.509 61.111 10.60 3.04 35.43 5.01
579 903 2.290287 CCCTCGGGTGTCCATGACA 61.290 63.158 0.00 0.00 40.50 3.58
583 907 2.031870 CTCGGGTGTCCATGACAGATA 58.968 52.381 0.00 0.00 43.57 1.98
588 912 2.766263 GGTGTCCATGACAGATAGACCA 59.234 50.000 0.00 0.00 43.57 4.02
628 952 1.084289 GTCATGTGGTAACTTCGGCC 58.916 55.000 0.00 0.00 37.61 6.13
636 960 3.365291 TAACTTCGGCCGCGCTGAT 62.365 57.895 23.51 6.75 43.86 2.90
654 978 4.760047 GTGCGCCGTCCTGTCCAT 62.760 66.667 4.18 0.00 0.00 3.41
666 990 3.443045 GTCCATTGGCCCACGCAG 61.443 66.667 0.00 0.00 36.38 5.18
671 995 2.905996 ATTGGCCCACGCAGGAGAA 61.906 57.895 0.00 0.00 41.22 2.87
674 998 2.281484 GCCCACGCAGGAGAAACA 60.281 61.111 0.00 0.00 41.22 2.83
679 1003 1.006102 ACGCAGGAGAAACAGGTCG 60.006 57.895 0.00 0.00 0.00 4.79
687 1011 1.052124 AGAAACAGGTCGGACCCACA 61.052 55.000 23.21 0.00 39.75 4.17
700 1024 0.677731 ACCCACATGTCGGCATCTTG 60.678 55.000 9.69 0.00 31.99 3.02
711 1036 0.798776 GGCATCTTGGTCTCGTGTTG 59.201 55.000 0.00 0.00 0.00 3.33
712 1037 1.608025 GGCATCTTGGTCTCGTGTTGA 60.608 52.381 0.00 0.00 0.00 3.18
713 1038 2.350522 GCATCTTGGTCTCGTGTTGAT 58.649 47.619 0.00 0.00 0.00 2.57
714 1039 2.744202 GCATCTTGGTCTCGTGTTGATT 59.256 45.455 0.00 0.00 0.00 2.57
716 1041 4.320494 GCATCTTGGTCTCGTGTTGATTTT 60.320 41.667 0.00 0.00 0.00 1.82
717 1042 5.762045 CATCTTGGTCTCGTGTTGATTTTT 58.238 37.500 0.00 0.00 0.00 1.94
718 1043 6.567701 GCATCTTGGTCTCGTGTTGATTTTTA 60.568 38.462 0.00 0.00 0.00 1.52
719 1044 6.928979 TCTTGGTCTCGTGTTGATTTTTAA 57.071 33.333 0.00 0.00 0.00 1.52
720 1045 6.954944 TCTTGGTCTCGTGTTGATTTTTAAG 58.045 36.000 0.00 0.00 0.00 1.85
721 1046 6.540914 TCTTGGTCTCGTGTTGATTTTTAAGT 59.459 34.615 0.00 0.00 0.00 2.24
722 1047 6.687081 TGGTCTCGTGTTGATTTTTAAGTT 57.313 33.333 0.00 0.00 0.00 2.66
723 1048 6.491394 TGGTCTCGTGTTGATTTTTAAGTTG 58.509 36.000 0.00 0.00 0.00 3.16
724 1049 6.316640 TGGTCTCGTGTTGATTTTTAAGTTGA 59.683 34.615 0.00 0.00 0.00 3.18
726 1051 7.254658 GGTCTCGTGTTGATTTTTAAGTTGAGA 60.255 37.037 0.00 0.00 0.00 3.27
727 1052 7.583040 GTCTCGTGTTGATTTTTAAGTTGAGAC 59.417 37.037 0.00 0.00 40.17 3.36
729 1054 7.406553 TCGTGTTGATTTTTAAGTTGAGACAG 58.593 34.615 0.00 0.00 0.00 3.51
731 1056 8.070171 CGTGTTGATTTTTAAGTTGAGACAGAT 58.930 33.333 0.00 0.00 0.00 2.90
733 1058 9.119418 TGTTGATTTTTAAGTTGAGACAGATGA 57.881 29.630 0.00 0.00 0.00 2.92
734 1059 9.387123 GTTGATTTTTAAGTTGAGACAGATGAC 57.613 33.333 0.00 0.00 0.00 3.06
735 1060 8.675705 TGATTTTTAAGTTGAGACAGATGACA 57.324 30.769 0.00 0.00 0.00 3.58
736 1061 9.288576 TGATTTTTAAGTTGAGACAGATGACAT 57.711 29.630 0.00 0.00 0.00 3.06
742 1067 6.025749 AGTTGAGACAGATGACATTTACGA 57.974 37.500 0.00 0.00 0.00 3.43
743 1068 6.455647 AGTTGAGACAGATGACATTTACGAA 58.544 36.000 0.00 0.00 0.00 3.85
744 1069 6.929049 AGTTGAGACAGATGACATTTACGAAA 59.071 34.615 0.00 0.00 0.00 3.46
745 1070 7.441157 AGTTGAGACAGATGACATTTACGAAAA 59.559 33.333 0.00 0.00 0.00 2.29
746 1071 7.117241 TGAGACAGATGACATTTACGAAAAC 57.883 36.000 0.00 0.00 0.00 2.43
747 1072 6.128929 TGAGACAGATGACATTTACGAAAACG 60.129 38.462 0.00 0.00 0.00 3.60
748 1073 5.694910 AGACAGATGACATTTACGAAAACGT 59.305 36.000 0.00 0.00 0.00 3.99
749 1074 6.202188 AGACAGATGACATTTACGAAAACGTT 59.798 34.615 0.00 0.00 0.00 3.99
750 1075 6.721321 ACAGATGACATTTACGAAAACGTTT 58.279 32.000 7.96 7.96 0.00 3.60
751 1076 7.190871 ACAGATGACATTTACGAAAACGTTTT 58.809 30.769 25.46 25.46 0.00 2.43
756 1364 6.015268 ACATTTACGAAAACGTTTTTGCTG 57.985 33.333 31.70 25.33 35.42 4.41
758 1366 1.273688 ACGAAAACGTTTTTGCTGGC 58.726 45.000 31.70 16.49 35.42 4.85
762 1370 3.242252 CGAAAACGTTTTTGCTGGCAATT 60.242 39.130 25.86 0.24 35.70 2.32
764 1372 3.942539 AACGTTTTTGCTGGCAATTTC 57.057 38.095 8.86 2.38 35.70 2.17
769 1377 4.318263 CGTTTTTGCTGGCAATTTCTTCAG 60.318 41.667 8.86 0.00 35.70 3.02
770 1378 4.669206 TTTTGCTGGCAATTTCTTCAGA 57.331 36.364 8.86 0.00 35.70 3.27
772 1380 4.877378 TTGCTGGCAATTTCTTCAGATT 57.123 36.364 3.72 0.00 0.00 2.40
773 1381 4.445452 TGCTGGCAATTTCTTCAGATTC 57.555 40.909 0.00 0.00 0.00 2.52
775 1383 4.171754 GCTGGCAATTTCTTCAGATTCAC 58.828 43.478 0.00 0.00 0.00 3.18
778 1386 5.716094 TGGCAATTTCTTCAGATTCACATG 58.284 37.500 0.00 0.00 0.00 3.21
779 1387 4.565564 GGCAATTTCTTCAGATTCACATGC 59.434 41.667 0.00 0.00 0.00 4.06
785 1393 5.988310 TCTTCAGATTCACATGCCATTTT 57.012 34.783 0.00 0.00 0.00 1.82
807 1415 6.817765 TTTTTCTAATTCGCATGGAAGACT 57.182 33.333 0.00 0.00 38.24 3.24
808 1416 6.817765 TTTTCTAATTCGCATGGAAGACTT 57.182 33.333 0.00 0.00 38.24 3.01
810 1418 7.539712 TTTCTAATTCGCATGGAAGACTTAG 57.460 36.000 0.00 2.95 38.24 2.18
812 1420 6.873997 TCTAATTCGCATGGAAGACTTAGAA 58.126 36.000 11.79 0.00 36.42 2.10
813 1421 7.327975 TCTAATTCGCATGGAAGACTTAGAAA 58.672 34.615 11.79 0.00 36.42 2.52
814 1422 6.817765 AATTCGCATGGAAGACTTAGAAAA 57.182 33.333 0.00 0.00 38.24 2.29
815 1423 6.817765 ATTCGCATGGAAGACTTAGAAAAA 57.182 33.333 0.00 0.00 38.24 1.94
837 1445 6.635030 AAAAACTACCACAGGTTTCATCTC 57.365 37.500 0.00 0.00 43.62 2.75
838 1446 4.974645 AACTACCACAGGTTTCATCTCA 57.025 40.909 0.00 0.00 37.09 3.27
840 1448 4.836825 ACTACCACAGGTTTCATCTCATG 58.163 43.478 0.00 0.00 37.09 3.07
842 1450 4.104383 ACCACAGGTTTCATCTCATGTT 57.896 40.909 0.00 0.00 27.29 2.71
844 1452 3.366679 CCACAGGTTTCATCTCATGTTGC 60.367 47.826 0.00 0.00 0.00 4.17
845 1453 3.253921 CACAGGTTTCATCTCATGTTGCA 59.746 43.478 0.00 0.00 0.00 4.08
846 1454 3.890756 ACAGGTTTCATCTCATGTTGCAA 59.109 39.130 0.00 0.00 0.00 4.08
847 1455 4.232221 CAGGTTTCATCTCATGTTGCAAC 58.768 43.478 22.83 22.83 0.00 4.17
849 1457 5.181811 CAGGTTTCATCTCATGTTGCAACTA 59.818 40.000 28.61 16.22 0.00 2.24
850 1458 5.769662 AGGTTTCATCTCATGTTGCAACTAA 59.230 36.000 28.61 11.56 0.00 2.24
851 1459 6.265196 AGGTTTCATCTCATGTTGCAACTAAA 59.735 34.615 28.61 10.80 0.00 1.85
852 1460 6.922957 GGTTTCATCTCATGTTGCAACTAAAA 59.077 34.615 28.61 10.42 0.00 1.52
853 1461 7.096065 GGTTTCATCTCATGTTGCAACTAAAAC 60.096 37.037 28.61 21.70 0.00 2.43
854 1462 6.882610 TCATCTCATGTTGCAACTAAAACT 57.117 33.333 28.61 8.52 0.00 2.66
855 1463 6.671190 TCATCTCATGTTGCAACTAAAACTG 58.329 36.000 28.61 18.56 0.00 3.16
856 1464 4.858935 TCTCATGTTGCAACTAAAACTGC 58.141 39.130 28.61 0.95 39.09 4.40
857 1465 3.626977 TCATGTTGCAACTAAAACTGCG 58.373 40.909 28.61 7.94 41.63 5.18
858 1466 3.313803 TCATGTTGCAACTAAAACTGCGA 59.686 39.130 28.61 6.27 41.63 5.10
859 1467 3.766676 TGTTGCAACTAAAACTGCGAA 57.233 38.095 28.61 2.43 41.63 4.70
860 1468 3.690422 TGTTGCAACTAAAACTGCGAAG 58.310 40.909 28.61 0.00 41.63 3.79
861 1469 3.375610 TGTTGCAACTAAAACTGCGAAGA 59.624 39.130 28.61 1.76 41.63 2.87
862 1470 3.602390 TGCAACTAAAACTGCGAAGAC 57.398 42.857 0.00 0.00 41.63 3.01
863 1471 2.939756 TGCAACTAAAACTGCGAAGACA 59.060 40.909 0.00 0.00 41.63 3.41
864 1472 3.563808 TGCAACTAAAACTGCGAAGACAT 59.436 39.130 0.00 0.00 41.63 3.06
865 1473 3.908382 GCAACTAAAACTGCGAAGACATG 59.092 43.478 0.00 0.00 0.00 3.21
866 1474 4.554723 GCAACTAAAACTGCGAAGACATGT 60.555 41.667 0.00 0.00 0.00 3.21
868 1476 5.344207 ACTAAAACTGCGAAGACATGTTC 57.656 39.130 0.00 0.00 0.00 3.18
869 1477 4.814234 ACTAAAACTGCGAAGACATGTTCA 59.186 37.500 0.00 0.00 0.00 3.18
870 1478 4.836125 AAAACTGCGAAGACATGTTCAT 57.164 36.364 0.00 0.00 0.00 2.57
871 1479 4.836125 AAACTGCGAAGACATGTTCATT 57.164 36.364 0.00 0.00 0.00 2.57
872 1480 3.818961 ACTGCGAAGACATGTTCATTG 57.181 42.857 0.00 0.00 0.00 2.82
874 1482 1.199789 TGCGAAGACATGTTCATTGGC 59.800 47.619 14.93 14.93 0.00 4.52
875 1483 1.468054 GCGAAGACATGTTCATTGGCC 60.468 52.381 0.00 0.00 0.00 5.36
876 1484 1.811965 CGAAGACATGTTCATTGGCCA 59.188 47.619 0.00 0.00 0.00 5.36
877 1485 2.414559 CGAAGACATGTTCATTGGCCAC 60.415 50.000 3.88 0.00 0.00 5.01
878 1486 1.549203 AGACATGTTCATTGGCCACC 58.451 50.000 3.88 0.00 0.00 4.61
879 1487 0.532115 GACATGTTCATTGGCCACCC 59.468 55.000 3.88 0.00 0.00 4.61
880 1488 0.114954 ACATGTTCATTGGCCACCCT 59.885 50.000 3.88 0.00 0.00 4.34
883 1491 1.337118 TGTTCATTGGCCACCCTTTC 58.663 50.000 3.88 0.00 0.00 2.62
884 1492 0.608130 GTTCATTGGCCACCCTTTCC 59.392 55.000 3.88 0.00 0.00 3.13
885 1493 0.189574 TTCATTGGCCACCCTTTCCA 59.810 50.000 3.88 0.00 0.00 3.53
886 1494 0.251742 TCATTGGCCACCCTTTCCAG 60.252 55.000 3.88 0.00 0.00 3.86
887 1495 1.610379 ATTGGCCACCCTTTCCAGC 60.610 57.895 3.88 0.00 0.00 4.85
888 1496 4.659172 TGGCCACCCTTTCCAGCG 62.659 66.667 0.00 0.00 0.00 5.18
889 1497 4.344865 GGCCACCCTTTCCAGCGA 62.345 66.667 0.00 0.00 0.00 4.93
890 1498 2.282180 GCCACCCTTTCCAGCGAA 60.282 61.111 0.00 0.00 0.00 4.70
891 1499 2.626780 GCCACCCTTTCCAGCGAAC 61.627 63.158 0.00 0.00 0.00 3.95
892 1500 2.325082 CCACCCTTTCCAGCGAACG 61.325 63.158 0.00 0.00 0.00 3.95
893 1501 1.597027 CACCCTTTCCAGCGAACGT 60.597 57.895 0.00 0.00 0.00 3.99
894 1502 1.147600 ACCCTTTCCAGCGAACGTT 59.852 52.632 0.00 0.00 0.00 3.99
895 1503 0.883370 ACCCTTTCCAGCGAACGTTC 60.883 55.000 18.47 18.47 0.00 3.95
908 1516 4.966850 CGAACGTTCGCCAGATAATAAT 57.033 40.909 34.54 0.00 44.26 1.28
909 1517 4.931214 CGAACGTTCGCCAGATAATAATC 58.069 43.478 34.54 0.00 44.26 1.75
910 1518 4.143389 CGAACGTTCGCCAGATAATAATCC 60.143 45.833 34.54 0.00 44.26 3.01
911 1519 4.602340 ACGTTCGCCAGATAATAATCCT 57.398 40.909 0.00 0.00 31.98 3.24
912 1520 4.307432 ACGTTCGCCAGATAATAATCCTG 58.693 43.478 0.00 0.00 31.98 3.86
993 3395 2.125633 GAAGGTTCCGGGCTCGAC 60.126 66.667 8.08 0.00 39.00 4.20
1251 3664 3.933722 CGCCTCGCCCTCATGGAT 61.934 66.667 0.00 0.00 35.39 3.41
1252 3665 2.574018 CGCCTCGCCCTCATGGATA 61.574 63.158 0.00 0.00 35.39 2.59
1309 3722 2.176798 CCCTCCCTCTGTAGTCTCATCT 59.823 54.545 0.00 0.00 0.00 2.90
1310 3723 3.486383 CCTCCCTCTGTAGTCTCATCTC 58.514 54.545 0.00 0.00 0.00 2.75
1312 3725 2.175931 TCCCTCTGTAGTCTCATCTCCC 59.824 54.545 0.00 0.00 0.00 4.30
1322 3735 0.859760 CTCATCTCCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
1366 3792 2.607892 GCGGCCGTGGATTGATAGC 61.608 63.158 28.70 0.15 0.00 2.97
1404 3850 2.746277 GGATTGGGCAGCGACGTT 60.746 61.111 0.00 0.00 0.00 3.99
1459 3905 3.728474 CGCAGCTCCTAAGGCATG 58.272 61.111 0.00 0.00 0.00 4.06
1460 3906 1.144716 CGCAGCTCCTAAGGCATGA 59.855 57.895 0.00 0.00 0.00 3.07
1461 3907 1.156645 CGCAGCTCCTAAGGCATGAC 61.157 60.000 0.00 0.00 0.00 3.06
1499 3945 3.450115 CTCCCCGGAGTCGACCAC 61.450 72.222 13.01 6.88 39.00 4.16
1500 3946 3.940506 CTCCCCGGAGTCGACCACT 62.941 68.421 13.01 0.00 38.45 4.00
1504 3950 1.663739 CCGGAGTCGACCACTGAAA 59.336 57.895 13.01 0.00 34.41 2.69
1526 3972 2.145865 CCGGAGGCATGGAGGTAAT 58.854 57.895 0.00 0.00 46.14 1.89
1527 3973 0.035458 CCGGAGGCATGGAGGTAATC 59.965 60.000 0.00 0.00 46.14 1.75
1528 3974 0.319900 CGGAGGCATGGAGGTAATCG 60.320 60.000 0.00 0.00 0.00 3.34
1530 3976 0.603975 GAGGCATGGAGGTAATCGCC 60.604 60.000 0.00 0.00 39.90 5.54
1535 4005 1.335132 ATGGAGGTAATCGCCGGTGT 61.335 55.000 16.01 0.00 38.24 4.16
1539 4009 1.875364 GGTAATCGCCGGTGTCGAC 60.875 63.158 16.01 9.11 38.88 4.20
1552 4022 0.901114 TGTCGACGGATTTGGGGAGA 60.901 55.000 11.62 0.00 0.00 3.71
1557 4027 2.084546 GACGGATTTGGGGAGAACAAG 58.915 52.381 0.00 0.00 0.00 3.16
1571 4041 2.094675 GAACAAGGGTGGTGATGATGG 58.905 52.381 0.00 0.00 0.00 3.51
1674 4168 0.027586 GCGACATTGTTATCGGTGGC 59.972 55.000 0.00 0.00 38.78 5.01
1707 4201 2.009774 CAGAGCATTACCGACTTTGGG 58.990 52.381 0.00 0.00 0.00 4.12
1731 4225 0.465097 CAAAGGCGAGGCTCATCCAT 60.465 55.000 20.59 9.48 37.29 3.41
1740 4234 1.771255 AGGCTCATCCATTACCACTCC 59.229 52.381 0.00 0.00 37.29 3.85
1796 4290 2.101415 GCACAAAGAGGAAAAGCTTGGT 59.899 45.455 0.00 0.00 0.00 3.67
1800 4294 6.515832 CACAAAGAGGAAAAGCTTGGTAAAT 58.484 36.000 0.00 0.00 27.58 1.40
1833 4327 1.676916 GCAGCAGCAAGACCTGTATCA 60.677 52.381 0.00 0.00 41.58 2.15
1908 4450 9.688592 CTCAAATCAGCAGAAGAAAATAGTTTT 57.311 29.630 0.00 0.00 35.12 2.43
1971 4513 2.329379 GGAGTGCTGACAGTCTTAACG 58.671 52.381 3.99 0.00 44.40 3.18
1978 4520 1.623973 GACAGTCTTAACGGCGCCAC 61.624 60.000 28.98 16.08 0.00 5.01
2065 4607 1.005748 TCACACCTGCAGCTCTTCG 60.006 57.895 8.66 0.00 0.00 3.79
2085 4627 7.594714 TCTTCGATAAAAGGAGGATATTCTCG 58.405 38.462 4.88 0.00 34.74 4.04
2205 4747 3.761752 GACCTTTAGGCTTGCCAAACATA 59.238 43.478 14.54 0.00 39.32 2.29
2223 4765 1.838112 TAAGCCGGGAGACTTTCGTA 58.162 50.000 2.18 0.00 0.00 3.43
2241 4783 2.367486 GTAGTCTTCCTACAGCCGTCT 58.633 52.381 0.00 0.00 44.65 4.18
2289 4831 4.495422 GTTACTCTTCTGCCGATGAAGAA 58.505 43.478 12.97 0.46 46.03 2.52
2294 4836 2.609427 TCTGCCGATGAAGAAGATGG 57.391 50.000 0.00 0.00 0.00 3.51
2475 5038 3.568007 GCATCCAACAGAACAGTTAACCA 59.432 43.478 0.88 0.00 0.00 3.67
2482 5045 6.094881 CCAACAGAACAGTTAACCAAGAAGAA 59.905 38.462 0.88 0.00 0.00 2.52
2484 5047 5.297029 ACAGAACAGTTAACCAAGAAGAAGC 59.703 40.000 0.88 0.00 0.00 3.86
2489 5052 3.507622 AGTTAACCAAGAAGAAGCATGGC 59.492 43.478 0.88 0.00 36.37 4.40
2540 5103 5.662674 ATGAAGTACTGAGTTCTACACCC 57.337 43.478 0.00 0.00 36.18 4.61
2541 5104 4.737578 TGAAGTACTGAGTTCTACACCCT 58.262 43.478 0.00 0.00 36.18 4.34
2650 5296 5.473796 GTGAAGTCACGGAGTTTTTAACA 57.526 39.130 0.00 0.00 41.61 2.41
2651 5297 5.871539 GTGAAGTCACGGAGTTTTTAACAA 58.128 37.500 0.00 0.00 41.61 2.83
2652 5298 5.963586 GTGAAGTCACGGAGTTTTTAACAAG 59.036 40.000 0.00 0.00 41.61 3.16
2653 5299 5.644636 TGAAGTCACGGAGTTTTTAACAAGT 59.355 36.000 0.00 0.00 41.61 3.16
2654 5300 6.817641 TGAAGTCACGGAGTTTTTAACAAGTA 59.182 34.615 0.00 0.00 41.61 2.24
2655 5301 6.594284 AGTCACGGAGTTTTTAACAAGTAC 57.406 37.500 0.00 0.00 41.61 2.73
2656 5302 6.343703 AGTCACGGAGTTTTTAACAAGTACT 58.656 36.000 0.00 0.00 41.61 2.73
2657 5303 6.820152 AGTCACGGAGTTTTTAACAAGTACTT 59.180 34.615 1.12 1.12 41.61 2.24
2658 5304 7.981225 AGTCACGGAGTTTTTAACAAGTACTTA 59.019 33.333 8.04 0.00 41.61 2.24
2682 5328 1.019278 TCGACCTCAAAATCGCTGGC 61.019 55.000 0.00 0.00 38.24 4.85
2689 5335 1.959985 TCAAAATCGCTGGCTTCCAAA 59.040 42.857 0.00 0.00 30.80 3.28
2691 5337 3.006752 TCAAAATCGCTGGCTTCCAAAAT 59.993 39.130 0.00 0.00 30.80 1.82
2694 5340 2.437200 TCGCTGGCTTCCAAAATTTG 57.563 45.000 0.00 0.00 30.80 2.32
2695 5341 1.686052 TCGCTGGCTTCCAAAATTTGT 59.314 42.857 4.92 0.00 30.80 2.83
2696 5342 2.102252 TCGCTGGCTTCCAAAATTTGTT 59.898 40.909 4.92 0.00 30.80 2.83
2697 5343 2.221517 CGCTGGCTTCCAAAATTTGTTG 59.778 45.455 4.92 0.00 30.80 3.33
2700 5346 3.802866 TGGCTTCCAAAATTTGTTGGTC 58.197 40.909 8.44 0.00 46.93 4.02
2701 5347 3.138304 GGCTTCCAAAATTTGTTGGTCC 58.862 45.455 8.44 5.69 46.93 4.46
2702 5348 2.799978 GCTTCCAAAATTTGTTGGTCCG 59.200 45.455 8.44 1.45 46.93 4.79
2703 5349 3.389221 CTTCCAAAATTTGTTGGTCCGG 58.611 45.455 8.44 0.00 46.93 5.14
2704 5350 2.389715 TCCAAAATTTGTTGGTCCGGT 58.610 42.857 0.00 0.00 46.93 5.28
2705 5351 3.563223 TCCAAAATTTGTTGGTCCGGTA 58.437 40.909 0.00 0.00 46.93 4.02
2706 5352 3.570550 TCCAAAATTTGTTGGTCCGGTAG 59.429 43.478 0.00 0.00 46.93 3.18
2707 5353 3.319689 CCAAAATTTGTTGGTCCGGTAGT 59.680 43.478 0.00 0.00 42.74 2.73
2708 5354 4.202172 CCAAAATTTGTTGGTCCGGTAGTT 60.202 41.667 0.00 0.00 42.74 2.24
2709 5355 5.353111 CAAAATTTGTTGGTCCGGTAGTTT 58.647 37.500 0.00 0.00 0.00 2.66
2710 5356 6.461231 CCAAAATTTGTTGGTCCGGTAGTTTA 60.461 38.462 0.00 0.00 42.74 2.01
2711 5357 6.712179 AAATTTGTTGGTCCGGTAGTTTAA 57.288 33.333 0.00 0.00 0.00 1.52
2712 5358 6.712179 AATTTGTTGGTCCGGTAGTTTAAA 57.288 33.333 0.00 0.00 0.00 1.52
2713 5359 5.754543 TTTGTTGGTCCGGTAGTTTAAAG 57.245 39.130 0.00 0.00 0.00 1.85
2714 5360 4.420522 TGTTGGTCCGGTAGTTTAAAGT 57.579 40.909 0.00 0.37 0.00 2.66
2715 5361 4.779696 TGTTGGTCCGGTAGTTTAAAGTT 58.220 39.130 0.00 0.00 0.00 2.66
2716 5362 5.923204 TGTTGGTCCGGTAGTTTAAAGTTA 58.077 37.500 0.00 0.00 0.00 2.24
2717 5363 6.532826 TGTTGGTCCGGTAGTTTAAAGTTAT 58.467 36.000 0.00 0.00 0.00 1.89
2718 5364 7.675062 TGTTGGTCCGGTAGTTTAAAGTTATA 58.325 34.615 0.00 0.00 0.00 0.98
2719 5365 8.153550 TGTTGGTCCGGTAGTTTAAAGTTATAA 58.846 33.333 0.00 0.00 0.00 0.98
2720 5366 8.443160 GTTGGTCCGGTAGTTTAAAGTTATAAC 58.557 37.037 7.57 7.57 0.00 1.89
2721 5367 7.906327 TGGTCCGGTAGTTTAAAGTTATAACT 58.094 34.615 12.50 12.50 42.04 2.24
2740 5386 7.740519 ATAACTTCATTAAAACGAGCATTGC 57.259 32.000 0.00 0.00 0.00 3.56
2741 5387 4.485163 ACTTCATTAAAACGAGCATTGCC 58.515 39.130 4.70 0.00 0.00 4.52
2742 5388 3.502191 TCATTAAAACGAGCATTGCCC 57.498 42.857 4.70 0.00 0.00 5.36
2743 5389 2.165437 TCATTAAAACGAGCATTGCCCC 59.835 45.455 4.70 0.00 0.00 5.80
2744 5390 1.917872 TTAAAACGAGCATTGCCCCT 58.082 45.000 4.70 0.00 0.00 4.79
2745 5391 1.173043 TAAAACGAGCATTGCCCCTG 58.827 50.000 4.70 0.00 0.00 4.45
2746 5392 0.827507 AAAACGAGCATTGCCCCTGT 60.828 50.000 4.70 0.00 0.00 4.00
2747 5393 1.244019 AAACGAGCATTGCCCCTGTC 61.244 55.000 4.70 0.00 0.00 3.51
2756 5402 0.754957 TTGCCCCTGTCCTTGTGTTG 60.755 55.000 0.00 0.00 0.00 3.33
2798 5444 8.723942 AAACTGATATTGATTATAGGGATCGC 57.276 34.615 0.54 0.54 0.00 4.58
2800 5446 8.027524 ACTGATATTGATTATAGGGATCGCAT 57.972 34.615 12.83 6.29 0.00 4.73
2801 5447 8.147058 ACTGATATTGATTATAGGGATCGCATC 58.853 37.037 12.83 6.70 0.00 3.91
2802 5448 8.021898 TGATATTGATTATAGGGATCGCATCA 57.978 34.615 12.83 9.18 0.00 3.07
2803 5449 8.485392 TGATATTGATTATAGGGATCGCATCAA 58.515 33.333 19.06 19.06 35.64 2.57
2804 5450 6.992063 ATTGATTATAGGGATCGCATCAAC 57.008 37.500 19.12 5.93 34.37 3.18
2805 5451 5.482163 TGATTATAGGGATCGCATCAACA 57.518 39.130 12.83 2.53 0.00 3.33
2806 5452 5.237815 TGATTATAGGGATCGCATCAACAC 58.762 41.667 12.83 0.00 0.00 3.32
2807 5453 4.681074 TTATAGGGATCGCATCAACACA 57.319 40.909 12.83 0.00 0.00 3.72
2808 5454 2.602257 TAGGGATCGCATCAACACAG 57.398 50.000 12.83 0.00 0.00 3.66
2809 5455 0.107508 AGGGATCGCATCAACACAGG 60.108 55.000 12.83 0.00 0.00 4.00
2810 5456 0.107703 GGGATCGCATCAACACAGGA 60.108 55.000 4.64 0.00 0.00 3.86
2811 5457 1.293924 GGATCGCATCAACACAGGAG 58.706 55.000 0.00 0.00 0.00 3.69
2812 5458 1.134699 GGATCGCATCAACACAGGAGA 60.135 52.381 0.00 0.00 0.00 3.71
2813 5459 1.929836 GATCGCATCAACACAGGAGAC 59.070 52.381 0.00 0.00 0.00 3.36
2814 5460 0.037326 TCGCATCAACACAGGAGACC 60.037 55.000 0.00 0.00 0.00 3.85
2815 5461 0.036952 CGCATCAACACAGGAGACCT 60.037 55.000 0.00 0.00 0.00 3.85
2816 5462 1.731720 GCATCAACACAGGAGACCTC 58.268 55.000 0.00 0.00 0.00 3.85
2817 5463 1.277557 GCATCAACACAGGAGACCTCT 59.722 52.381 0.00 0.00 0.00 3.69
2818 5464 2.676463 GCATCAACACAGGAGACCTCTC 60.676 54.545 0.00 0.00 42.14 3.20
2831 5477 4.954875 GAGACCTCTCCAGTTATGATTGG 58.045 47.826 0.00 0.00 37.02 3.16
2832 5478 3.135530 AGACCTCTCCAGTTATGATTGGC 59.864 47.826 0.00 0.00 32.94 4.52
2833 5479 2.846206 ACCTCTCCAGTTATGATTGGCA 59.154 45.455 0.00 0.00 32.94 4.92
2834 5480 3.266772 ACCTCTCCAGTTATGATTGGCAA 59.733 43.478 0.68 0.68 32.94 4.52
2835 5481 4.079558 ACCTCTCCAGTTATGATTGGCAAT 60.080 41.667 13.54 13.54 32.94 3.56
2836 5482 4.891756 CCTCTCCAGTTATGATTGGCAATT 59.108 41.667 14.93 1.59 32.94 2.32
2837 5483 6.064060 CCTCTCCAGTTATGATTGGCAATTA 58.936 40.000 14.93 10.96 32.94 1.40
2838 5484 6.206243 CCTCTCCAGTTATGATTGGCAATTAG 59.794 42.308 14.93 0.00 32.94 1.73
2839 5485 6.662755 TCTCCAGTTATGATTGGCAATTAGT 58.337 36.000 14.93 6.21 32.94 2.24
2840 5486 6.767902 TCTCCAGTTATGATTGGCAATTAGTC 59.232 38.462 14.93 2.70 32.94 2.59
2841 5487 6.422333 TCCAGTTATGATTGGCAATTAGTCA 58.578 36.000 14.93 8.96 32.94 3.41
2843 5489 6.974622 CCAGTTATGATTGGCAATTAGTCAAC 59.025 38.462 14.93 14.35 46.08 3.18
2844 5490 7.362834 CCAGTTATGATTGGCAATTAGTCAACA 60.363 37.037 14.93 6.09 46.08 3.33
2845 5491 7.485913 CAGTTATGATTGGCAATTAGTCAACAC 59.514 37.037 14.93 9.20 46.08 3.32
2852 5498 4.168760 GGCAATTAGTCAACACAATGCTC 58.831 43.478 0.00 0.00 0.00 4.26
2856 5502 6.348458 GCAATTAGTCAACACAATGCTCACTA 60.348 38.462 0.00 0.00 0.00 2.74
2904 5550 6.039616 TGTTTCAAAACTATTGTTGTGCTCC 58.960 36.000 5.43 0.00 40.34 4.70
2905 5551 5.843673 TTCAAAACTATTGTTGTGCTCCA 57.156 34.783 5.43 0.00 40.34 3.86
2914 5560 2.221169 TGTTGTGCTCCACATTCTCAC 58.779 47.619 0.00 0.00 44.16 3.51
2966 5612 4.507710 GTTCCTAGTGTTGCATCAGATCA 58.492 43.478 0.00 0.00 0.00 2.92
2968 5614 2.871022 CCTAGTGTTGCATCAGATCAGC 59.129 50.000 0.00 0.00 0.00 4.26
2981 5627 4.825422 TCAGATCAGCTTAGTTCAACCAG 58.175 43.478 0.00 0.00 0.00 4.00
2985 5631 4.955811 TCAGCTTAGTTCAACCAGAAGA 57.044 40.909 0.00 0.00 36.78 2.87
2990 5636 1.583054 AGTTCAACCAGAAGACACGC 58.417 50.000 0.00 0.00 36.78 5.34
2996 5642 2.549754 CAACCAGAAGACACGCTTGAAT 59.450 45.455 0.00 0.00 36.83 2.57
3022 5668 9.927668 TTTGAAGCCTTCTTAATTTTATTCCAG 57.072 29.630 5.96 0.00 31.48 3.86
3024 5670 9.479549 TGAAGCCTTCTTAATTTTATTCCAGAT 57.520 29.630 5.96 0.00 31.48 2.90
3043 5689 9.627123 TTCCAGATCTAAGGTGTTAAATTATGG 57.373 33.333 0.00 0.00 0.00 2.74
3070 5716 6.759272 TGATCCATATACAGTAGCAGGAAAC 58.241 40.000 2.72 2.25 0.00 2.78
3076 5722 2.783135 ACAGTAGCAGGAAACCATGTG 58.217 47.619 0.00 0.00 0.00 3.21
3077 5723 1.470098 CAGTAGCAGGAAACCATGTGC 59.530 52.381 0.00 0.00 36.10 4.57
3089 5735 0.393537 CCATGTGCCTCTCTGGTTCC 60.394 60.000 0.00 0.00 38.35 3.62
3110 5756 7.560262 GGTTCCTTGGTAATTTTAGCTTCCTAT 59.440 37.037 0.00 0.00 32.61 2.57
3140 5786 2.872858 TGATGGTAGAGATCTCACGTCG 59.127 50.000 24.39 0.00 0.00 5.12
3143 5789 2.277969 GGTAGAGATCTCACGTCGACA 58.722 52.381 24.39 0.00 0.00 4.35
3195 5842 1.604308 TCAACACATGCCCAGCTGG 60.604 57.895 26.87 26.87 37.09 4.85
3270 5917 9.095700 AGTATCTCCTTTTCTTTCTAAGACTGT 57.904 33.333 0.00 0.00 37.23 3.55
3305 5952 3.243975 GGTGGGTTTGAACTCGAAGTCTA 60.244 47.826 0.00 0.00 29.87 2.59
3307 5954 3.243975 TGGGTTTGAACTCGAAGTCTACC 60.244 47.826 9.49 9.49 29.87 3.18
3404 6070 6.507023 AGTTTTCCACTGTGAATCATTCAAC 58.493 36.000 9.86 0.00 42.15 3.18
3422 6088 4.631131 TCAACTCCACTGTACATGACTTG 58.369 43.478 0.00 0.59 0.00 3.16
3432 6098 7.043125 CCACTGTACATGACTTGAATATTCTCG 60.043 40.741 16.24 9.45 0.00 4.04
3441 6107 4.943705 ACTTGAATATTCTCGTGCCACATT 59.056 37.500 16.24 0.00 0.00 2.71
3505 6193 1.103803 TGTGAGCGAGGGTGATCTAC 58.896 55.000 0.00 0.00 0.00 2.59
3566 6254 4.757149 GCGATTTCCTGCTGAATTATACCT 59.243 41.667 0.00 0.00 31.67 3.08
3608 6296 9.460019 TCAAACCATATGAGTATGTTTCATCAA 57.540 29.630 3.65 0.00 36.72 2.57
3646 6334 7.547370 GTGGTATCTCTGCCTATTGATGAATAC 59.453 40.741 0.00 0.00 0.00 1.89
3651 6339 6.100279 TCTCTGCCTATTGATGAATACCTTGT 59.900 38.462 0.00 0.00 0.00 3.16
3652 6340 6.291377 TCTGCCTATTGATGAATACCTTGTC 58.709 40.000 0.00 0.00 0.00 3.18
3653 6341 5.376625 TGCCTATTGATGAATACCTTGTCC 58.623 41.667 0.00 0.00 0.00 4.02
3657 6345 5.841957 ATTGATGAATACCTTGTCCTTGC 57.158 39.130 0.00 0.00 0.00 4.01
3658 6346 4.574674 TGATGAATACCTTGTCCTTGCT 57.425 40.909 0.00 0.00 0.00 3.91
3660 6348 3.788227 TGAATACCTTGTCCTTGCTGT 57.212 42.857 0.00 0.00 0.00 4.40
3661 6349 4.098914 TGAATACCTTGTCCTTGCTGTT 57.901 40.909 0.00 0.00 0.00 3.16
3662 6350 3.820467 TGAATACCTTGTCCTTGCTGTTG 59.180 43.478 0.00 0.00 0.00 3.33
3663 6351 3.788227 ATACCTTGTCCTTGCTGTTGA 57.212 42.857 0.00 0.00 0.00 3.18
3664 6352 2.435372 ACCTTGTCCTTGCTGTTGAA 57.565 45.000 0.00 0.00 0.00 2.69
3696 6385 5.131642 TCAGATTGGTGATAGCTTGGAATCT 59.868 40.000 0.00 0.00 0.00 2.40
3732 6421 4.642445 ACAAAGTAACAGGAAAAACGGG 57.358 40.909 0.00 0.00 0.00 5.28
3767 6456 3.490348 AGCACTGCTCATGGTTAAACTT 58.510 40.909 0.00 0.00 30.62 2.66
3812 6501 7.140048 GGGTCGTTTTGTGTAAATGATGTTTA 58.860 34.615 0.00 0.00 42.21 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.441356 GCCCATCAGTCAAAAACAGAACAA 60.441 41.667 0.00 0.00 0.00 2.83
20 21 1.355381 ACCATGAGCCCATCAGTCAAA 59.645 47.619 0.00 0.00 42.53 2.69
35 36 5.251764 AGGAATGACAGAAGAAAGACCATG 58.748 41.667 0.00 0.00 0.00 3.66
105 118 1.227999 CCGTTGACGCAGGAACACAT 61.228 55.000 0.00 0.00 38.18 3.21
106 119 1.885388 CCGTTGACGCAGGAACACA 60.885 57.895 0.00 0.00 38.18 3.72
126 139 1.364171 GCTCATCGGACTATGGCGT 59.636 57.895 0.00 0.00 0.00 5.68
138 151 4.467084 TTGGCCCCGTCGCTCATC 62.467 66.667 0.00 0.00 0.00 2.92
139 152 4.473520 CTTGGCCCCGTCGCTCAT 62.474 66.667 0.00 0.00 0.00 2.90
144 157 4.338710 TTTCCCTTGGCCCCGTCG 62.339 66.667 0.00 0.00 0.00 5.12
145 158 2.361230 CTTTCCCTTGGCCCCGTC 60.361 66.667 0.00 0.00 0.00 4.79
146 159 2.306715 AAACTTTCCCTTGGCCCCGT 62.307 55.000 0.00 0.00 0.00 5.28
147 160 1.118965 AAAACTTTCCCTTGGCCCCG 61.119 55.000 0.00 0.00 0.00 5.73
148 161 0.396435 CAAAACTTTCCCTTGGCCCC 59.604 55.000 0.00 0.00 0.00 5.80
149 162 1.128200 ACAAAACTTTCCCTTGGCCC 58.872 50.000 0.00 0.00 0.00 5.80
150 163 1.810031 GCACAAAACTTTCCCTTGGCC 60.810 52.381 0.00 0.00 0.00 5.36
151 164 1.134551 TGCACAAAACTTTCCCTTGGC 60.135 47.619 0.00 0.00 0.00 4.52
152 165 2.977772 TGCACAAAACTTTCCCTTGG 57.022 45.000 0.00 0.00 0.00 3.61
153 166 4.598406 GTTTGCACAAAACTTTCCCTTG 57.402 40.909 0.00 0.00 44.10 3.61
165 451 4.185467 ACATTTGTCACAGTTTGCACAA 57.815 36.364 0.00 0.00 0.00 3.33
174 460 2.349817 GCACCGAGAACATTTGTCACAG 60.350 50.000 0.00 0.00 0.00 3.66
210 497 6.636850 ACGACTTTCACAAATGTTATTTCAGC 59.363 34.615 0.00 0.00 0.00 4.26
212 499 6.915300 CCACGACTTTCACAAATGTTATTTCA 59.085 34.615 0.00 0.00 0.00 2.69
241 528 5.301805 ACATTTTGGGAGTGTCGATTTTCTT 59.698 36.000 0.00 0.00 0.00 2.52
242 529 4.827284 ACATTTTGGGAGTGTCGATTTTCT 59.173 37.500 0.00 0.00 0.00 2.52
243 530 5.121221 ACATTTTGGGAGTGTCGATTTTC 57.879 39.130 0.00 0.00 0.00 2.29
248 535 5.556915 AGAATAACATTTTGGGAGTGTCGA 58.443 37.500 0.00 0.00 0.00 4.20
265 560 5.381174 TCGTGGAAGTCTTTCGAGAATAA 57.619 39.130 4.99 0.00 33.98 1.40
322 646 7.244166 TGGTGCAAACTTTTGACATATTTTG 57.756 32.000 5.87 0.00 40.55 2.44
328 652 6.756299 ATTTTTGGTGCAAACTTTTGACAT 57.244 29.167 5.87 0.00 40.55 3.06
330 654 7.080724 TGAAATTTTTGGTGCAAACTTTTGAC 58.919 30.769 5.87 1.78 40.55 3.18
333 657 7.446001 TCTGAAATTTTTGGTGCAAACTTTT 57.554 28.000 0.00 0.00 32.79 2.27
391 715 7.066645 CTCATTTGAGCTCAGGATGAACAATAA 59.933 37.037 29.32 15.35 37.77 1.40
392 716 6.541278 CTCATTTGAGCTCAGGATGAACAATA 59.459 38.462 29.32 16.17 37.77 1.90
393 717 5.357314 CTCATTTGAGCTCAGGATGAACAAT 59.643 40.000 29.32 18.02 37.77 2.71
394 718 4.698780 CTCATTTGAGCTCAGGATGAACAA 59.301 41.667 29.32 16.87 37.77 2.83
395 719 4.259356 CTCATTTGAGCTCAGGATGAACA 58.741 43.478 29.32 17.12 37.77 3.18
396 720 4.879104 CTCATTTGAGCTCAGGATGAAC 57.121 45.455 29.32 2.18 37.77 3.18
412 736 2.035632 CCTTCTACTCCCGAGCTCATT 58.964 52.381 15.40 0.00 0.00 2.57
413 737 1.698506 CCTTCTACTCCCGAGCTCAT 58.301 55.000 15.40 0.00 0.00 2.90
460 784 7.438459 CGGGTACTCAAACATTCTTTATAGGAG 59.562 40.741 0.00 0.00 0.00 3.69
470 794 3.056035 AGGAGACGGGTACTCAAACATTC 60.056 47.826 0.00 0.00 36.26 2.67
477 801 0.989602 TCTCAGGAGACGGGTACTCA 59.010 55.000 0.00 0.00 36.26 3.41
507 831 3.062466 CGTGGAGGGCACTCTCGA 61.062 66.667 22.44 3.89 43.46 4.04
569 893 2.427095 CGTGGTCTATCTGTCATGGACA 59.573 50.000 0.00 0.00 40.50 4.02
579 903 2.423898 CCGCACCCGTGGTCTATCT 61.424 63.158 0.00 0.00 38.06 1.98
600 924 1.978455 TACCACATGACGATGGCCCC 61.978 60.000 0.00 0.00 39.84 5.80
633 957 3.932580 GACAGGACGGCGCACATCA 62.933 63.158 10.83 0.00 0.00 3.07
639 963 3.499737 CAATGGACAGGACGGCGC 61.500 66.667 6.90 0.00 0.00 6.53
640 964 2.819595 CCAATGGACAGGACGGCG 60.820 66.667 4.80 4.80 0.00 6.46
642 966 2.438434 GGCCAATGGACAGGACGG 60.438 66.667 2.05 0.00 0.00 4.79
653 977 2.424842 TTTCTCCTGCGTGGGCCAAT 62.425 55.000 8.40 0.00 38.85 3.16
654 978 3.126703 TTTCTCCTGCGTGGGCCAA 62.127 57.895 8.40 0.00 38.85 4.52
666 990 1.295746 GGGTCCGACCTGTTTCTCC 59.704 63.158 17.27 0.00 38.64 3.71
671 995 1.374947 CATGTGGGTCCGACCTGTT 59.625 57.895 17.27 0.00 38.64 3.16
674 998 2.646175 CGACATGTGGGTCCGACCT 61.646 63.158 17.27 0.00 38.64 3.85
679 1003 1.819632 GATGCCGACATGTGGGTCC 60.820 63.158 25.56 12.28 36.35 4.46
687 1011 0.179100 CGAGACCAAGATGCCGACAT 60.179 55.000 0.00 0.00 39.98 3.06
700 1024 6.721321 TCAACTTAAAAATCAACACGAGACC 58.279 36.000 0.00 0.00 0.00 3.85
716 1041 8.085909 TCGTAAATGTCATCTGTCTCAACTTAA 58.914 33.333 0.00 0.00 0.00 1.85
717 1042 7.599171 TCGTAAATGTCATCTGTCTCAACTTA 58.401 34.615 0.00 0.00 0.00 2.24
718 1043 6.455647 TCGTAAATGTCATCTGTCTCAACTT 58.544 36.000 0.00 0.00 0.00 2.66
719 1044 6.025749 TCGTAAATGTCATCTGTCTCAACT 57.974 37.500 0.00 0.00 0.00 3.16
720 1045 6.706055 TTCGTAAATGTCATCTGTCTCAAC 57.294 37.500 0.00 0.00 0.00 3.18
721 1046 7.568679 CGTTTTCGTAAATGTCATCTGTCTCAA 60.569 37.037 0.00 0.00 38.65 3.02
722 1047 6.128929 CGTTTTCGTAAATGTCATCTGTCTCA 60.129 38.462 0.00 0.00 38.65 3.27
723 1048 6.234213 CGTTTTCGTAAATGTCATCTGTCTC 58.766 40.000 0.00 0.00 38.65 3.36
724 1049 6.153212 CGTTTTCGTAAATGTCATCTGTCT 57.847 37.500 0.00 0.00 38.65 3.41
734 1059 9.700594 TTGCCAGCAAAAACGTTTTCGTAAATG 62.701 37.037 25.37 18.88 43.53 2.32
735 1060 7.822973 TTGCCAGCAAAAACGTTTTCGTAAAT 61.823 34.615 25.37 7.13 43.53 1.40
736 1061 6.579145 TTGCCAGCAAAAACGTTTTCGTAAA 61.579 36.000 25.37 11.53 43.53 2.01
737 1062 5.144143 TTGCCAGCAAAAACGTTTTCGTAA 61.144 37.500 25.37 13.25 43.53 3.18
739 1064 2.927014 TTGCCAGCAAAAACGTTTTCGT 60.927 40.909 25.37 9.36 44.98 3.85
740 1065 1.656095 TTGCCAGCAAAAACGTTTTCG 59.344 42.857 25.37 16.70 40.07 3.46
742 1067 4.394610 AGAAATTGCCAGCAAAAACGTTTT 59.605 33.333 20.26 20.26 39.55 2.43
743 1068 3.938334 AGAAATTGCCAGCAAAAACGTTT 59.062 34.783 7.96 7.96 39.55 3.60
744 1069 3.530535 AGAAATTGCCAGCAAAAACGTT 58.469 36.364 9.44 0.00 39.55 3.99
745 1070 3.177997 AGAAATTGCCAGCAAAAACGT 57.822 38.095 9.44 0.00 39.55 3.99
746 1071 3.555139 TGAAGAAATTGCCAGCAAAAACG 59.445 39.130 9.44 0.00 39.55 3.60
747 1072 4.810491 TCTGAAGAAATTGCCAGCAAAAAC 59.190 37.500 9.44 3.89 39.55 2.43
748 1073 5.021033 TCTGAAGAAATTGCCAGCAAAAA 57.979 34.783 9.44 0.00 39.55 1.94
749 1074 4.669206 TCTGAAGAAATTGCCAGCAAAA 57.331 36.364 9.44 0.00 39.55 2.44
750 1075 4.877378 ATCTGAAGAAATTGCCAGCAAA 57.123 36.364 9.44 0.00 39.55 3.68
751 1076 4.281435 TGAATCTGAAGAAATTGCCAGCAA 59.719 37.500 7.64 7.64 40.47 3.91
756 1364 4.565564 GCATGTGAATCTGAAGAAATTGCC 59.434 41.667 0.00 0.00 0.00 4.52
758 1366 5.716094 TGGCATGTGAATCTGAAGAAATTG 58.284 37.500 0.00 0.00 0.00 2.32
762 1370 5.988310 AAATGGCATGTGAATCTGAAGAA 57.012 34.783 0.00 0.00 0.00 2.52
785 1393 6.817765 AAGTCTTCCATGCGAATTAGAAAA 57.182 33.333 0.00 0.00 0.00 2.29
787 1395 6.873997 TCTAAGTCTTCCATGCGAATTAGAA 58.126 36.000 17.55 3.03 41.20 2.10
788 1396 6.465439 TCTAAGTCTTCCATGCGAATTAGA 57.535 37.500 16.66 16.66 41.61 2.10
789 1397 7.539712 TTTCTAAGTCTTCCATGCGAATTAG 57.460 36.000 13.94 13.94 38.47 1.73
790 1398 7.915293 TTTTCTAAGTCTTCCATGCGAATTA 57.085 32.000 0.00 0.00 0.00 1.40
791 1399 6.817765 TTTTCTAAGTCTTCCATGCGAATT 57.182 33.333 0.00 0.00 0.00 2.17
792 1400 6.817765 TTTTTCTAAGTCTTCCATGCGAAT 57.182 33.333 0.00 0.00 0.00 3.34
814 1422 6.126409 TGAGATGAAACCTGTGGTAGTTTTT 58.874 36.000 0.00 0.00 36.36 1.94
815 1423 5.690865 TGAGATGAAACCTGTGGTAGTTTT 58.309 37.500 0.00 0.00 36.36 2.43
816 1424 5.304686 TGAGATGAAACCTGTGGTAGTTT 57.695 39.130 0.00 0.00 38.85 2.66
819 1427 4.836825 ACATGAGATGAAACCTGTGGTAG 58.163 43.478 0.00 0.00 33.12 3.18
820 1428 4.908601 ACATGAGATGAAACCTGTGGTA 57.091 40.909 0.00 0.00 33.12 3.25
821 1429 3.795688 ACATGAGATGAAACCTGTGGT 57.204 42.857 0.00 0.00 37.65 4.16
822 1430 3.366679 GCAACATGAGATGAAACCTGTGG 60.367 47.826 0.00 0.00 0.00 4.17
824 1432 3.489355 TGCAACATGAGATGAAACCTGT 58.511 40.909 0.00 0.00 0.00 4.00
825 1433 4.022589 AGTTGCAACATGAGATGAAACCTG 60.023 41.667 30.11 0.00 0.00 4.00
826 1434 4.147321 AGTTGCAACATGAGATGAAACCT 58.853 39.130 30.11 2.33 0.00 3.50
827 1435 4.510038 AGTTGCAACATGAGATGAAACC 57.490 40.909 30.11 0.00 0.00 3.27
828 1436 7.649306 AGTTTTAGTTGCAACATGAGATGAAAC 59.351 33.333 30.11 23.27 0.00 2.78
830 1438 7.140705 CAGTTTTAGTTGCAACATGAGATGAA 58.859 34.615 30.11 9.55 0.00 2.57
831 1439 6.671190 CAGTTTTAGTTGCAACATGAGATGA 58.329 36.000 30.11 3.51 0.00 2.92
832 1440 5.344128 GCAGTTTTAGTTGCAACATGAGATG 59.656 40.000 30.11 20.84 40.02 2.90
834 1442 4.554526 CGCAGTTTTAGTTGCAACATGAGA 60.555 41.667 30.11 10.07 40.28 3.27
835 1443 3.665409 CGCAGTTTTAGTTGCAACATGAG 59.335 43.478 30.11 15.60 40.28 2.90
836 1444 3.313803 TCGCAGTTTTAGTTGCAACATGA 59.686 39.130 30.11 13.04 40.28 3.07
837 1445 3.626977 TCGCAGTTTTAGTTGCAACATG 58.373 40.909 30.11 18.05 40.28 3.21
838 1446 3.980646 TCGCAGTTTTAGTTGCAACAT 57.019 38.095 30.11 17.54 40.28 2.71
840 1448 3.724257 GTCTTCGCAGTTTTAGTTGCAAC 59.276 43.478 22.17 22.17 40.28 4.17
842 1450 2.939756 TGTCTTCGCAGTTTTAGTTGCA 59.060 40.909 0.00 0.00 40.28 4.08
844 1452 5.095691 ACATGTCTTCGCAGTTTTAGTTG 57.904 39.130 0.00 0.00 0.00 3.16
845 1453 5.295787 TGAACATGTCTTCGCAGTTTTAGTT 59.704 36.000 0.00 0.00 0.00 2.24
846 1454 4.814234 TGAACATGTCTTCGCAGTTTTAGT 59.186 37.500 0.00 0.00 0.00 2.24
847 1455 5.342806 TGAACATGTCTTCGCAGTTTTAG 57.657 39.130 0.00 0.00 0.00 1.85
849 1457 4.836125 ATGAACATGTCTTCGCAGTTTT 57.164 36.364 0.00 0.00 0.00 2.43
850 1458 4.539870 CAATGAACATGTCTTCGCAGTTT 58.460 39.130 0.00 0.00 0.00 2.66
851 1459 3.058016 CCAATGAACATGTCTTCGCAGTT 60.058 43.478 0.00 0.00 0.00 3.16
852 1460 2.485426 CCAATGAACATGTCTTCGCAGT 59.515 45.455 0.00 0.00 0.00 4.40
853 1461 2.730090 GCCAATGAACATGTCTTCGCAG 60.730 50.000 0.00 0.00 0.00 5.18
854 1462 1.199789 GCCAATGAACATGTCTTCGCA 59.800 47.619 0.00 0.00 0.00 5.10
855 1463 1.468054 GGCCAATGAACATGTCTTCGC 60.468 52.381 0.00 0.00 0.00 4.70
856 1464 1.811965 TGGCCAATGAACATGTCTTCG 59.188 47.619 0.61 0.00 0.00 3.79
857 1465 2.094545 GGTGGCCAATGAACATGTCTTC 60.095 50.000 7.24 0.00 0.00 2.87
858 1466 1.895131 GGTGGCCAATGAACATGTCTT 59.105 47.619 7.24 0.00 0.00 3.01
859 1467 1.549203 GGTGGCCAATGAACATGTCT 58.451 50.000 7.24 0.00 0.00 3.41
860 1468 0.532115 GGGTGGCCAATGAACATGTC 59.468 55.000 7.24 0.00 0.00 3.06
861 1469 0.114954 AGGGTGGCCAATGAACATGT 59.885 50.000 7.24 0.00 0.00 3.21
862 1470 1.269012 AAGGGTGGCCAATGAACATG 58.731 50.000 7.24 0.00 0.00 3.21
863 1471 1.901833 GAAAGGGTGGCCAATGAACAT 59.098 47.619 7.24 0.00 0.00 2.71
864 1472 1.337118 GAAAGGGTGGCCAATGAACA 58.663 50.000 7.24 0.00 0.00 3.18
865 1473 0.608130 GGAAAGGGTGGCCAATGAAC 59.392 55.000 7.24 0.00 0.00 3.18
866 1474 0.189574 TGGAAAGGGTGGCCAATGAA 59.810 50.000 7.24 0.00 0.00 2.57
868 1476 1.891722 GCTGGAAAGGGTGGCCAATG 61.892 60.000 7.24 0.00 0.00 2.82
869 1477 1.610379 GCTGGAAAGGGTGGCCAAT 60.610 57.895 7.24 0.00 0.00 3.16
870 1478 2.203625 GCTGGAAAGGGTGGCCAA 60.204 61.111 7.24 0.00 0.00 4.52
871 1479 4.659172 CGCTGGAAAGGGTGGCCA 62.659 66.667 0.00 0.00 0.00 5.36
872 1480 3.860930 TTCGCTGGAAAGGGTGGCC 62.861 63.158 0.00 0.00 0.00 5.36
874 1482 2.325082 CGTTCGCTGGAAAGGGTGG 61.325 63.158 0.00 0.00 33.05 4.61
875 1483 1.164041 AACGTTCGCTGGAAAGGGTG 61.164 55.000 0.00 0.00 36.17 4.61
876 1484 0.883370 GAACGTTCGCTGGAAAGGGT 60.883 55.000 13.36 0.00 36.17 4.34
877 1485 1.866925 GAACGTTCGCTGGAAAGGG 59.133 57.895 13.36 0.00 36.17 3.95
878 1486 1.491563 CGAACGTTCGCTGGAAAGG 59.508 57.895 34.54 8.59 44.26 3.11
888 1496 4.989168 AGGATTATTATCTGGCGAACGTTC 59.011 41.667 18.47 18.47 0.00 3.95
889 1497 4.750098 CAGGATTATTATCTGGCGAACGTT 59.250 41.667 0.00 0.00 0.00 3.99
890 1498 4.202223 ACAGGATTATTATCTGGCGAACGT 60.202 41.667 0.00 0.00 0.00 3.99
891 1499 4.307432 ACAGGATTATTATCTGGCGAACG 58.693 43.478 0.00 0.00 0.00 3.95
892 1500 7.724305 TTTACAGGATTATTATCTGGCGAAC 57.276 36.000 0.00 0.00 0.00 3.95
893 1501 8.918202 AATTTACAGGATTATTATCTGGCGAA 57.082 30.769 0.00 0.00 0.00 4.70
894 1502 8.918202 AAATTTACAGGATTATTATCTGGCGA 57.082 30.769 0.00 0.00 0.00 5.54
1036 3440 2.107141 GGCGAAGGGGATCTCGTG 59.893 66.667 4.31 0.00 0.00 4.35
1281 3694 0.324091 TACAGAGGGAGGGGTTCGTC 60.324 60.000 0.00 0.00 0.00 4.20
1284 3697 1.007359 AGACTACAGAGGGAGGGGTTC 59.993 57.143 0.00 0.00 0.00 3.62
1309 3722 4.095400 GGGCAGGAGGAGGAGGGA 62.095 72.222 0.00 0.00 0.00 4.20
1312 3725 3.950861 TTGGGGGCAGGAGGAGGAG 62.951 68.421 0.00 0.00 0.00 3.69
1322 3735 2.117206 AATCGCAGTTTGGGGGCA 59.883 55.556 0.00 0.00 0.00 5.36
1363 3789 2.355756 GCTTCTGCAATGGAAATCGCTA 59.644 45.455 0.00 0.00 39.41 4.26
1404 3850 2.121832 TCGGGCTTCTTGAGGGGA 59.878 61.111 0.00 0.00 0.00 4.81
1407 3853 1.078848 CCTGTCGGGCTTCTTGAGG 60.079 63.158 0.00 0.00 0.00 3.86
1456 3902 2.223735 GCTTGCCTGAATCATGGTCATG 60.224 50.000 4.67 4.67 40.09 3.07
1457 3903 2.029623 GCTTGCCTGAATCATGGTCAT 58.970 47.619 0.00 0.00 0.00 3.06
1458 3904 1.005097 AGCTTGCCTGAATCATGGTCA 59.995 47.619 0.00 0.00 0.00 4.02
1459 3905 1.674962 GAGCTTGCCTGAATCATGGTC 59.325 52.381 0.00 0.00 0.00 4.02
1460 3906 1.684248 GGAGCTTGCCTGAATCATGGT 60.684 52.381 0.00 0.00 0.00 3.55
1461 3907 1.030457 GGAGCTTGCCTGAATCATGG 58.970 55.000 0.00 0.00 0.00 3.66
1496 3942 1.302511 CCTCCGGTGGTTTCAGTGG 60.303 63.158 14.67 0.00 0.00 4.00
1497 3943 1.966451 GCCTCCGGTGGTTTCAGTG 60.966 63.158 23.03 0.00 0.00 3.66
1498 3944 1.779061 ATGCCTCCGGTGGTTTCAGT 61.779 55.000 23.03 1.69 0.00 3.41
1499 3945 1.002134 ATGCCTCCGGTGGTTTCAG 60.002 57.895 23.03 0.42 0.00 3.02
1500 3946 1.303236 CATGCCTCCGGTGGTTTCA 60.303 57.895 23.03 13.33 0.00 2.69
1504 3950 3.402681 CTCCATGCCTCCGGTGGT 61.403 66.667 23.03 1.92 34.61 4.16
1514 3960 1.961277 CCGGCGATTACCTCCATGC 60.961 63.158 9.30 0.00 0.00 4.06
1517 3963 1.952102 GACACCGGCGATTACCTCCA 61.952 60.000 9.30 0.00 0.00 3.86
1518 3964 1.227176 GACACCGGCGATTACCTCC 60.227 63.158 9.30 0.00 0.00 4.30
1522 3968 3.684323 GTCGACACCGGCGATTAC 58.316 61.111 9.30 0.00 40.19 1.89
1528 3974 2.433664 AAATCCGTCGACACCGGC 60.434 61.111 17.16 0.00 45.09 6.13
1530 3976 2.098233 CCCAAATCCGTCGACACCG 61.098 63.158 17.16 1.07 37.07 4.94
1535 4005 0.248289 GTTCTCCCCAAATCCGTCGA 59.752 55.000 0.00 0.00 0.00 4.20
1539 4009 1.463674 CCTTGTTCTCCCCAAATCCG 58.536 55.000 0.00 0.00 0.00 4.18
1552 4022 1.428912 ACCATCATCACCACCCTTGTT 59.571 47.619 0.00 0.00 0.00 2.83
1557 4027 1.212688 TCATCACCATCATCACCACCC 59.787 52.381 0.00 0.00 0.00 4.61
1571 4041 6.115446 TCACCAAGGTTCTCAATATCATCAC 58.885 40.000 0.00 0.00 0.00 3.06
1674 4168 0.392595 TGCTCTGCTCCAGCTGATTG 60.393 55.000 17.39 5.73 45.61 2.67
1740 4234 5.139435 TGATAATCCTGCTATCCAACTCG 57.861 43.478 0.00 0.00 0.00 4.18
1751 4245 3.556843 GCTCCTCTCCTTGATAATCCTGC 60.557 52.174 0.00 0.00 0.00 4.85
1833 4327 5.698741 TTTGACCTGTATCCATGTGATCT 57.301 39.130 0.00 0.00 34.76 2.75
1882 4376 9.688592 AAAACTATTTTCTTCTGCTGATTTGAG 57.311 29.630 0.00 0.00 0.00 3.02
1908 4450 7.882791 TCTTGCCATAAGTTCACAAGAGAAATA 59.117 33.333 0.00 0.00 41.20 1.40
1971 4513 2.709475 CGCAAGAATAGTGGCGCC 59.291 61.111 22.73 22.73 43.14 6.53
1978 4520 2.126467 GAGAGCAGAGCGCAAGAATAG 58.874 52.381 11.47 0.00 46.13 1.73
2065 4607 6.994221 TCACCGAGAATATCCTCCTTTTATC 58.006 40.000 0.00 0.00 0.00 1.75
2085 4627 0.689080 TCTCCTGGGAGCATCTCACC 60.689 60.000 11.51 0.00 36.46 4.02
2146 4688 1.755977 CGTAGATCTCAGCTTCCCCCT 60.756 57.143 0.00 0.00 0.00 4.79
2205 4747 3.468063 ACGAAAGTCTCCCGGCTT 58.532 55.556 0.00 0.00 44.19 4.35
2223 4765 1.546476 CAAGACGGCTGTAGGAAGACT 59.454 52.381 0.00 0.00 0.00 3.24
2226 4768 0.108138 CCCAAGACGGCTGTAGGAAG 60.108 60.000 11.75 0.00 0.00 3.46
2241 4783 2.452600 AAGGCAGAGTTTTGTCCCAA 57.547 45.000 0.00 0.00 0.00 4.12
2256 4798 2.234168 AGAAGAGTAACCCGAGAAAGGC 59.766 50.000 0.00 0.00 0.00 4.35
2289 4831 4.019051 TCCATGTGATCACTTGAACCATCT 60.019 41.667 32.40 4.07 38.35 2.90
2292 4834 3.786368 TCCATGTGATCACTTGAACCA 57.214 42.857 32.40 16.43 38.35 3.67
2293 4835 4.701651 TGATTCCATGTGATCACTTGAACC 59.298 41.667 32.40 20.54 38.35 3.62
2294 4836 5.675575 GCTGATTCCATGTGATCACTTGAAC 60.676 44.000 32.40 22.06 38.35 3.18
2475 5038 1.065199 TCCATCGCCATGCTTCTTCTT 60.065 47.619 0.00 0.00 0.00 2.52
2482 5045 1.038681 TGCATTTCCATCGCCATGCT 61.039 50.000 4.73 0.00 42.20 3.79
2484 5047 1.611977 AGATGCATTTCCATCGCCATG 59.388 47.619 0.00 0.00 44.86 3.66
2489 5052 5.678132 TTGTATGAGATGCATTTCCATCG 57.322 39.130 14.19 0.00 44.86 3.84
2540 5103 5.728471 ACAGAGTGGATTCTCAACATACAG 58.272 41.667 0.00 0.00 36.97 2.74
2541 5104 5.745312 ACAGAGTGGATTCTCAACATACA 57.255 39.130 0.00 0.00 36.97 2.29
2647 5293 9.715121 TTTGAGGTCGAAATATAAGTACTTGTT 57.285 29.630 18.56 8.11 0.00 2.83
2648 5294 9.715121 TTTTGAGGTCGAAATATAAGTACTTGT 57.285 29.630 18.56 14.13 0.00 3.16
2651 5297 9.245962 CGATTTTGAGGTCGAAATATAAGTACT 57.754 33.333 5.35 0.00 39.40 2.73
2652 5298 8.002665 GCGATTTTGAGGTCGAAATATAAGTAC 58.997 37.037 5.35 0.00 39.40 2.73
2653 5299 7.924412 AGCGATTTTGAGGTCGAAATATAAGTA 59.076 33.333 5.35 0.00 39.40 2.24
2654 5300 6.761714 AGCGATTTTGAGGTCGAAATATAAGT 59.238 34.615 5.35 0.00 39.40 2.24
2655 5301 7.065894 CAGCGATTTTGAGGTCGAAATATAAG 58.934 38.462 5.35 0.93 39.40 1.73
2656 5302 6.018262 CCAGCGATTTTGAGGTCGAAATATAA 60.018 38.462 5.35 0.00 39.40 0.98
2657 5303 5.465390 CCAGCGATTTTGAGGTCGAAATATA 59.535 40.000 5.35 0.00 39.40 0.86
2658 5304 4.273480 CCAGCGATTTTGAGGTCGAAATAT 59.727 41.667 5.35 0.00 39.40 1.28
2675 5321 1.686052 ACAAATTTTGGAAGCCAGCGA 59.314 42.857 13.42 0.00 33.81 4.93
2676 5322 2.153366 ACAAATTTTGGAAGCCAGCG 57.847 45.000 13.42 0.00 33.81 5.18
2689 5335 6.321945 ACTTTAAACTACCGGACCAACAAATT 59.678 34.615 9.46 0.00 0.00 1.82
2691 5337 5.192176 ACTTTAAACTACCGGACCAACAAA 58.808 37.500 9.46 0.47 0.00 2.83
2694 5340 8.443160 GTTATAACTTTAAACTACCGGACCAAC 58.557 37.037 9.46 0.00 0.00 3.77
2695 5341 8.374743 AGTTATAACTTTAAACTACCGGACCAA 58.625 33.333 9.46 0.00 35.21 3.67
2696 5342 7.906327 AGTTATAACTTTAAACTACCGGACCA 58.094 34.615 9.46 0.00 35.21 4.02
2697 5343 8.777865 AAGTTATAACTTTAAACTACCGGACC 57.222 34.615 22.49 0.00 46.52 4.46
2714 5360 9.284594 GCAATGCTCGTTTTAATGAAGTTATAA 57.715 29.630 0.00 0.00 0.00 0.98
2715 5361 7.913297 GGCAATGCTCGTTTTAATGAAGTTATA 59.087 33.333 4.82 0.00 0.00 0.98
2716 5362 6.751888 GGCAATGCTCGTTTTAATGAAGTTAT 59.248 34.615 4.82 0.00 0.00 1.89
2717 5363 6.090129 GGCAATGCTCGTTTTAATGAAGTTA 58.910 36.000 4.82 0.00 0.00 2.24
2718 5364 4.923281 GGCAATGCTCGTTTTAATGAAGTT 59.077 37.500 4.82 0.00 0.00 2.66
2719 5365 4.485163 GGCAATGCTCGTTTTAATGAAGT 58.515 39.130 4.82 0.00 0.00 3.01
2720 5366 3.859386 GGGCAATGCTCGTTTTAATGAAG 59.141 43.478 4.82 0.00 0.00 3.02
2721 5367 3.367910 GGGGCAATGCTCGTTTTAATGAA 60.368 43.478 4.82 0.00 0.00 2.57
2722 5368 2.165437 GGGGCAATGCTCGTTTTAATGA 59.835 45.455 4.82 0.00 0.00 2.57
2723 5369 2.166254 AGGGGCAATGCTCGTTTTAATG 59.834 45.455 4.82 0.00 0.00 1.90
2724 5370 2.166254 CAGGGGCAATGCTCGTTTTAAT 59.834 45.455 4.82 0.00 0.00 1.40
2725 5371 1.543802 CAGGGGCAATGCTCGTTTTAA 59.456 47.619 4.82 0.00 0.00 1.52
2726 5372 1.173043 CAGGGGCAATGCTCGTTTTA 58.827 50.000 4.82 0.00 0.00 1.52
2727 5373 0.827507 ACAGGGGCAATGCTCGTTTT 60.828 50.000 4.82 0.00 0.00 2.43
2728 5374 1.228552 ACAGGGGCAATGCTCGTTT 60.229 52.632 4.82 0.00 0.00 3.60
2729 5375 1.675641 GACAGGGGCAATGCTCGTT 60.676 57.895 4.82 0.00 0.00 3.85
2730 5376 2.045926 GACAGGGGCAATGCTCGT 60.046 61.111 4.82 0.00 0.00 4.18
2731 5377 2.825836 GGACAGGGGCAATGCTCG 60.826 66.667 4.82 0.00 0.00 5.03
2732 5378 1.000396 AAGGACAGGGGCAATGCTC 60.000 57.895 4.82 0.00 0.00 4.26
2733 5379 1.304713 CAAGGACAGGGGCAATGCT 60.305 57.895 4.82 0.00 0.00 3.79
2734 5380 1.607467 ACAAGGACAGGGGCAATGC 60.607 57.895 0.00 0.00 0.00 3.56
2735 5381 0.540365 ACACAAGGACAGGGGCAATG 60.540 55.000 0.00 0.00 0.00 2.82
2736 5382 0.188342 AACACAAGGACAGGGGCAAT 59.812 50.000 0.00 0.00 0.00 3.56
2737 5383 0.754957 CAACACAAGGACAGGGGCAA 60.755 55.000 0.00 0.00 0.00 4.52
2738 5384 1.152777 CAACACAAGGACAGGGGCA 60.153 57.895 0.00 0.00 0.00 5.36
2739 5385 1.903404 CCAACACAAGGACAGGGGC 60.903 63.158 0.00 0.00 0.00 5.80
2740 5386 0.768622 TACCAACACAAGGACAGGGG 59.231 55.000 0.00 0.00 0.00 4.79
2741 5387 2.158667 ACTTACCAACACAAGGACAGGG 60.159 50.000 0.00 0.00 0.00 4.45
2742 5388 3.208747 ACTTACCAACACAAGGACAGG 57.791 47.619 0.00 0.00 0.00 4.00
2743 5389 5.277828 GCTAAACTTACCAACACAAGGACAG 60.278 44.000 0.00 0.00 0.00 3.51
2744 5390 4.577283 GCTAAACTTACCAACACAAGGACA 59.423 41.667 0.00 0.00 0.00 4.02
2745 5391 4.820173 AGCTAAACTTACCAACACAAGGAC 59.180 41.667 0.00 0.00 0.00 3.85
2746 5392 5.043737 AGCTAAACTTACCAACACAAGGA 57.956 39.130 0.00 0.00 0.00 3.36
2747 5393 5.278315 GGAAGCTAAACTTACCAACACAAGG 60.278 44.000 0.00 0.00 39.29 3.61
2787 5433 3.006859 CCTGTGTTGATGCGATCCCTATA 59.993 47.826 0.00 0.00 0.00 1.31
2792 5438 1.134699 TCTCCTGTGTTGATGCGATCC 60.135 52.381 0.00 0.00 0.00 3.36
2796 5442 0.036952 AGGTCTCCTGTGTTGATGCG 60.037 55.000 0.00 0.00 29.57 4.73
2797 5443 1.277557 AGAGGTCTCCTGTGTTGATGC 59.722 52.381 0.00 0.00 31.76 3.91
2798 5444 3.244033 GAGAGGTCTCCTGTGTTGATG 57.756 52.381 0.00 0.00 37.02 3.07
2809 5455 4.742138 GCCAATCATAACTGGAGAGGTCTC 60.742 50.000 0.00 0.00 42.14 3.36
2810 5456 3.135530 GCCAATCATAACTGGAGAGGTCT 59.864 47.826 0.00 0.00 34.35 3.85
2811 5457 3.118261 TGCCAATCATAACTGGAGAGGTC 60.118 47.826 0.00 0.00 34.35 3.85
2812 5458 2.846206 TGCCAATCATAACTGGAGAGGT 59.154 45.455 0.00 0.00 34.35 3.85
2813 5459 3.565764 TGCCAATCATAACTGGAGAGG 57.434 47.619 0.00 0.00 34.35 3.69
2814 5460 6.769822 ACTAATTGCCAATCATAACTGGAGAG 59.230 38.462 0.00 0.00 34.35 3.20
2815 5461 6.662755 ACTAATTGCCAATCATAACTGGAGA 58.337 36.000 0.00 0.00 34.35 3.71
2816 5462 6.543465 TGACTAATTGCCAATCATAACTGGAG 59.457 38.462 0.00 0.00 34.35 3.86
2817 5463 6.422333 TGACTAATTGCCAATCATAACTGGA 58.578 36.000 0.00 0.00 34.35 3.86
2818 5464 6.698008 TGACTAATTGCCAATCATAACTGG 57.302 37.500 0.00 0.00 35.67 4.00
2819 5465 7.485913 GTGTTGACTAATTGCCAATCATAACTG 59.514 37.037 0.00 0.00 0.00 3.16
2820 5466 7.176515 TGTGTTGACTAATTGCCAATCATAACT 59.823 33.333 0.00 0.00 0.00 2.24
2821 5467 7.312154 TGTGTTGACTAATTGCCAATCATAAC 58.688 34.615 0.00 0.00 0.00 1.89
2822 5468 7.459795 TGTGTTGACTAATTGCCAATCATAA 57.540 32.000 0.00 0.00 0.00 1.90
2823 5469 7.459795 TTGTGTTGACTAATTGCCAATCATA 57.540 32.000 0.00 0.00 0.00 2.15
2824 5470 5.981088 TGTGTTGACTAATTGCCAATCAT 57.019 34.783 0.00 0.00 0.00 2.45
2825 5471 5.781210 TTGTGTTGACTAATTGCCAATCA 57.219 34.783 0.00 0.00 0.00 2.57
2826 5472 5.062558 GCATTGTGTTGACTAATTGCCAATC 59.937 40.000 0.00 0.00 0.00 2.67
2827 5473 4.931002 GCATTGTGTTGACTAATTGCCAAT 59.069 37.500 0.00 0.00 0.00 3.16
2828 5474 4.039004 AGCATTGTGTTGACTAATTGCCAA 59.961 37.500 0.00 0.00 0.00 4.52
2829 5475 3.573538 AGCATTGTGTTGACTAATTGCCA 59.426 39.130 0.00 0.00 0.00 4.92
2830 5476 4.168760 GAGCATTGTGTTGACTAATTGCC 58.831 43.478 0.00 0.00 0.00 4.52
2831 5477 4.618489 GTGAGCATTGTGTTGACTAATTGC 59.382 41.667 0.00 0.00 0.00 3.56
2832 5478 6.005583 AGTGAGCATTGTGTTGACTAATTG 57.994 37.500 0.00 0.00 0.00 2.32
2833 5479 7.369803 CTAGTGAGCATTGTGTTGACTAATT 57.630 36.000 0.00 0.00 0.00 1.40
2834 5480 6.974932 CTAGTGAGCATTGTGTTGACTAAT 57.025 37.500 0.00 0.00 0.00 1.73
2879 5525 6.198966 GGAGCACAACAATAGTTTTGAAACAG 59.801 38.462 9.08 0.00 41.30 3.16
2881 5527 6.019881 GTGGAGCACAACAATAGTTTTGAAAC 60.020 38.462 0.00 0.00 37.56 2.78
2926 5572 1.507140 ACCCAACAGTCTTGGAGTGA 58.493 50.000 9.04 0.00 42.06 3.41
2929 5575 1.421646 AGGAACCCAACAGTCTTGGAG 59.578 52.381 0.00 0.00 42.06 3.86
2932 5578 3.181454 ACACTAGGAACCCAACAGTCTTG 60.181 47.826 0.00 0.00 0.00 3.02
2966 5612 4.381411 GTGTCTTCTGGTTGAACTAAGCT 58.619 43.478 0.00 0.00 37.65 3.74
2968 5614 3.184581 GCGTGTCTTCTGGTTGAACTAAG 59.815 47.826 0.00 0.00 0.00 2.18
2981 5627 3.665871 GCTTCAAATTCAAGCGTGTCTTC 59.334 43.478 0.00 0.00 37.14 2.87
2985 5631 1.956477 AGGCTTCAAATTCAAGCGTGT 59.044 42.857 13.62 2.20 46.21 4.49
2996 5642 9.927668 CTGGAATAAAATTAAGAAGGCTTCAAA 57.072 29.630 27.70 20.67 35.56 2.69
3043 5689 7.646548 TCCTGCTACTGTATATGGATCATAC 57.353 40.000 0.00 0.00 0.00 2.39
3051 5697 6.203530 CACATGGTTTCCTGCTACTGTATATG 59.796 42.308 0.00 0.00 0.00 1.78
3070 5716 0.393537 GGAACCAGAGAGGCACATGG 60.394 60.000 0.00 4.97 43.14 3.66
3076 5722 1.276622 TACCAAGGAACCAGAGAGGC 58.723 55.000 0.00 0.00 43.14 4.70
3077 5723 4.576330 AATTACCAAGGAACCAGAGAGG 57.424 45.455 0.00 0.00 45.67 3.69
3089 5735 9.832445 TCAGTATAGGAAGCTAAAATTACCAAG 57.168 33.333 0.00 0.00 0.00 3.61
3110 5756 9.237187 GTGAGATCTCTACCATCAATATCAGTA 57.763 37.037 22.95 0.00 0.00 2.74
3129 5775 1.370609 TCCTCTGTCGACGTGAGATC 58.629 55.000 28.52 0.00 0.00 2.75
3143 5789 3.618351 CATTGCTGGACAGATTTCCTCT 58.382 45.455 3.00 0.00 36.51 3.69
3225 5872 7.161404 AGATACTGCAAAGTGTAGAATGTCAA 58.839 34.615 0.10 0.00 34.09 3.18
3270 5917 2.471815 ACCCACCATTCGGATCTCTA 57.528 50.000 0.00 0.00 35.59 2.43
3305 5952 6.183347 CCTCTGATCTGGAACAAAATTAGGT 58.817 40.000 0.00 0.00 38.70 3.08
3307 5954 6.656693 ACACCTCTGATCTGGAACAAAATTAG 59.343 38.462 0.00 0.00 38.70 1.73
3404 6070 7.984050 AGAATATTCAAGTCATGTACAGTGGAG 59.016 37.037 17.56 0.00 0.00 3.86
3422 6088 3.627577 ACCAATGTGGCACGAGAATATTC 59.372 43.478 13.77 7.41 42.67 1.75
3441 6107 2.725637 TCACTACTGTATACCGCACCA 58.274 47.619 0.00 0.00 0.00 4.17
3486 6174 1.103803 GTAGATCACCCTCGCTCACA 58.896 55.000 0.00 0.00 0.00 3.58
3497 6185 6.813649 TGCACTTTACAAGAGATGTAGATCAC 59.186 38.462 2.30 0.00 45.00 3.06
3505 6193 4.573900 AGGTCTGCACTTTACAAGAGATG 58.426 43.478 0.00 0.00 0.00 2.90
3608 6296 6.939163 GGCAGAGATACCACATATTCATCTTT 59.061 38.462 0.00 0.00 0.00 2.52
3646 6334 2.301346 ACTTCAACAGCAAGGACAAGG 58.699 47.619 0.00 0.00 0.00 3.61
3651 6339 4.127171 GACAACTACTTCAACAGCAAGGA 58.873 43.478 0.00 0.00 0.00 3.36
3652 6340 3.876914 TGACAACTACTTCAACAGCAAGG 59.123 43.478 0.00 0.00 0.00 3.61
3653 6341 4.811024 TCTGACAACTACTTCAACAGCAAG 59.189 41.667 0.00 0.00 0.00 4.01
3657 6345 5.760253 ACCAATCTGACAACTACTTCAACAG 59.240 40.000 0.00 0.00 0.00 3.16
3658 6346 5.527214 CACCAATCTGACAACTACTTCAACA 59.473 40.000 0.00 0.00 0.00 3.33
3660 6348 5.924356 TCACCAATCTGACAACTACTTCAA 58.076 37.500 0.00 0.00 0.00 2.69
3661 6349 5.545063 TCACCAATCTGACAACTACTTCA 57.455 39.130 0.00 0.00 0.00 3.02
3662 6350 6.256757 GCTATCACCAATCTGACAACTACTTC 59.743 42.308 0.00 0.00 0.00 3.01
3663 6351 6.070538 AGCTATCACCAATCTGACAACTACTT 60.071 38.462 0.00 0.00 0.00 2.24
3664 6352 5.423610 AGCTATCACCAATCTGACAACTACT 59.576 40.000 0.00 0.00 0.00 2.57
3732 6421 0.951040 AGTGCTACACTTTCAGCGCC 60.951 55.000 2.29 0.00 46.95 6.53
3749 6438 8.807948 ACATAATAAGTTTAACCATGAGCAGT 57.192 30.769 0.00 0.00 0.00 4.40
3767 6456 7.816995 ACGACCCGTTAACAACTTAACATAATA 59.183 33.333 6.39 0.00 41.30 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.