Multiple sequence alignment - TraesCS1B01G036900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G036900 chr1B 100.000 3200 0 0 1 3200 17625296 17622097 0.000000e+00 5910.0
1 TraesCS1B01G036900 chr1B 81.137 387 59 8 1376 1749 532235563 532235948 6.710000e-77 298.0
2 TraesCS1B01G036900 chr1B 84.906 159 9 7 2506 2651 17622273 17622117 2.570000e-31 147.0
3 TraesCS1B01G036900 chr1B 84.906 159 9 7 3024 3180 17622791 17622646 2.570000e-31 147.0
4 TraesCS1B01G036900 chr1D 90.283 2192 107 41 368 2504 11783419 11781279 0.000000e+00 2771.0
5 TraesCS1B01G036900 chr1D 93.381 695 31 5 2506 3200 11780973 11780294 0.000000e+00 1014.0
6 TraesCS1B01G036900 chr1D 86.452 155 10 5 2506 2651 11780466 11780314 3.300000e-35 159.0
7 TraesCS1B01G036900 chr1A 91.603 1965 92 29 567 2503 13863126 13861207 0.000000e+00 2647.0
8 TraesCS1B01G036900 chr1A 92.960 696 43 3 2506 3200 13860910 13860220 0.000000e+00 1009.0
9 TraesCS1B01G036900 chr1A 78.474 511 45 24 2662 3155 13861250 13860788 1.130000e-69 274.0
10 TraesCS1B01G036900 chr3B 86.494 385 44 5 1376 1753 818277097 818276714 1.780000e-112 416.0
11 TraesCS1B01G036900 chr3D 86.614 381 43 5 1376 1749 608401455 608401834 6.390000e-112 414.0
12 TraesCS1B01G036900 chr3D 91.837 49 4 0 1015 1063 608401145 608401193 5.730000e-08 69.4
13 TraesCS1B01G036900 chr3A 86.234 385 45 5 1376 1753 740887950 740887567 8.260000e-111 411.0
14 TraesCS1B01G036900 chr3A 75.979 383 58 18 1376 1752 143700662 143700308 1.970000e-37 167.0
15 TraesCS1B01G036900 chr4D 80.513 390 62 7 1376 1752 311190257 311189869 1.450000e-73 287.0
16 TraesCS1B01G036900 chr4A 88.652 141 16 0 1090 1230 669859802 669859662 4.240000e-39 172.0
17 TraesCS1B01G036900 chr6D 79.096 177 20 12 54 218 68705131 68704960 4.370000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G036900 chr1B 17622097 17625296 3199 True 2068.000000 5910 89.937333 1 3200 3 chr1B.!!$R1 3199
1 TraesCS1B01G036900 chr1D 11780294 11783419 3125 True 1314.666667 2771 90.038667 368 3200 3 chr1D.!!$R1 2832
2 TraesCS1B01G036900 chr1A 13860220 13863126 2906 True 1310.000000 2647 87.679000 567 3200 3 chr1A.!!$R1 2633
3 TraesCS1B01G036900 chr3D 608401145 608401834 689 False 241.700000 414 89.225500 1015 1749 2 chr3D.!!$F1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.240945 CCAGGAATTGCGTGTTGGAC 59.759 55.0 0.00 0.0 0.00 4.02 F
565 571 0.451628 CGACGAACGACAAGCGAGTA 60.452 55.0 0.14 0.0 45.77 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2114 1.873591 GGCGAACATATTGCGGAAGAT 59.126 47.619 0.0 0.0 0.0 2.40 R
2277 2386 2.806244 CAAATCGTCGTGTTCCCTTTCT 59.194 45.455 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.483014 TCCACGTTACCCTTCATTGG 57.517 50.000 0.00 0.00 0.00 3.16
22 23 0.808755 CCACGTTACCCTTCATTGGC 59.191 55.000 0.00 0.00 0.00 4.52
23 24 0.446222 CACGTTACCCTTCATTGGCG 59.554 55.000 0.00 0.00 0.00 5.69
24 25 0.675522 ACGTTACCCTTCATTGGCGG 60.676 55.000 0.00 0.00 0.00 6.13
25 26 1.807226 GTTACCCTTCATTGGCGGC 59.193 57.895 0.00 0.00 0.00 6.53
26 27 1.747367 TTACCCTTCATTGGCGGCG 60.747 57.895 0.51 0.51 0.00 6.46
27 28 3.690685 TACCCTTCATTGGCGGCGG 62.691 63.158 9.78 0.00 0.00 6.13
39 40 4.745751 CGGCGGCGGTTCCTGTTA 62.746 66.667 25.36 0.00 0.00 2.41
40 41 2.124860 GGCGGCGGTTCCTGTTAT 60.125 61.111 9.78 0.00 0.00 1.89
41 42 2.469516 GGCGGCGGTTCCTGTTATG 61.470 63.158 9.78 0.00 0.00 1.90
42 43 2.469516 GCGGCGGTTCCTGTTATGG 61.470 63.158 9.78 0.00 0.00 2.74
43 44 1.078708 CGGCGGTTCCTGTTATGGT 60.079 57.895 0.00 0.00 0.00 3.55
44 45 1.366111 CGGCGGTTCCTGTTATGGTG 61.366 60.000 0.00 0.00 0.00 4.17
45 46 0.322187 GGCGGTTCCTGTTATGGTGT 60.322 55.000 0.00 0.00 0.00 4.16
46 47 0.802494 GCGGTTCCTGTTATGGTGTG 59.198 55.000 0.00 0.00 0.00 3.82
47 48 0.802494 CGGTTCCTGTTATGGTGTGC 59.198 55.000 0.00 0.00 0.00 4.57
48 49 1.173913 GGTTCCTGTTATGGTGTGCC 58.826 55.000 0.00 0.00 0.00 5.01
49 50 0.802494 GTTCCTGTTATGGTGTGCCG 59.198 55.000 0.00 0.00 37.67 5.69
50 51 0.322098 TTCCTGTTATGGTGTGCCGG 60.322 55.000 0.00 0.00 37.67 6.13
51 52 1.002624 CCTGTTATGGTGTGCCGGT 60.003 57.895 1.90 0.00 37.67 5.28
52 53 0.608035 CCTGTTATGGTGTGCCGGTT 60.608 55.000 1.90 0.00 37.67 4.44
53 54 0.521291 CTGTTATGGTGTGCCGGTTG 59.479 55.000 1.90 0.00 37.67 3.77
54 55 1.211709 GTTATGGTGTGCCGGTTGC 59.788 57.895 1.90 0.00 41.77 4.17
55 56 1.074072 TTATGGTGTGCCGGTTGCT 59.926 52.632 1.90 0.00 42.00 3.91
56 57 1.240641 TTATGGTGTGCCGGTTGCTG 61.241 55.000 1.90 0.00 42.00 4.41
57 58 2.404566 TATGGTGTGCCGGTTGCTGT 62.405 55.000 1.90 0.00 42.00 4.40
58 59 3.216292 GGTGTGCCGGTTGCTGTT 61.216 61.111 1.90 0.00 42.00 3.16
59 60 2.781158 GGTGTGCCGGTTGCTGTTT 61.781 57.895 1.90 0.00 42.00 2.83
60 61 1.448922 GGTGTGCCGGTTGCTGTTTA 61.449 55.000 1.90 0.00 42.00 2.01
61 62 0.317519 GTGTGCCGGTTGCTGTTTAC 60.318 55.000 1.90 0.00 42.00 2.01
62 63 0.464735 TGTGCCGGTTGCTGTTTACT 60.465 50.000 1.90 0.00 42.00 2.24
63 64 1.202663 TGTGCCGGTTGCTGTTTACTA 60.203 47.619 1.90 0.00 42.00 1.82
64 65 1.196127 GTGCCGGTTGCTGTTTACTAC 59.804 52.381 1.90 0.00 42.00 2.73
65 66 1.202663 TGCCGGTTGCTGTTTACTACA 60.203 47.619 1.90 0.00 42.00 2.74
66 67 1.874872 GCCGGTTGCTGTTTACTACAA 59.125 47.619 1.90 0.00 36.02 2.41
67 68 2.350102 GCCGGTTGCTGTTTACTACAAC 60.350 50.000 1.90 0.00 41.26 3.32
68 69 2.873472 CCGGTTGCTGTTTACTACAACA 59.127 45.455 15.40 0.00 43.23 3.33
76 77 4.537015 CTGTTTACTACAACAGCTTTGCC 58.463 43.478 0.83 0.00 45.43 4.52
77 78 3.316868 TGTTTACTACAACAGCTTTGCCC 59.683 43.478 8.09 0.00 32.70 5.36
78 79 1.803334 TACTACAACAGCTTTGCCCG 58.197 50.000 8.09 1.83 0.00 6.13
79 80 0.889186 ACTACAACAGCTTTGCCCGG 60.889 55.000 0.00 0.00 0.00 5.73
80 81 2.200170 CTACAACAGCTTTGCCCGGC 62.200 60.000 1.04 1.04 0.00 6.13
81 82 2.690653 TACAACAGCTTTGCCCGGCT 62.691 55.000 11.61 0.00 39.60 5.52
82 83 2.985847 AACAGCTTTGCCCGGCTC 60.986 61.111 11.61 0.00 36.59 4.70
95 96 4.821589 GGCTCCGGCGAGTGAAGG 62.822 72.222 9.30 0.00 38.49 3.46
96 97 4.821589 GCTCCGGCGAGTGAAGGG 62.822 72.222 9.30 0.00 38.49 3.95
97 98 4.821589 CTCCGGCGAGTGAAGGGC 62.822 72.222 9.30 0.00 0.00 5.19
99 100 4.697756 CCGGCGAGTGAAGGGCAA 62.698 66.667 9.30 0.00 0.00 4.52
100 101 3.423154 CGGCGAGTGAAGGGCAAC 61.423 66.667 0.00 0.00 0.00 4.17
101 102 3.423154 GGCGAGTGAAGGGCAACG 61.423 66.667 0.00 0.00 37.60 4.10
102 103 4.090057 GCGAGTGAAGGGCAACGC 62.090 66.667 0.00 0.00 43.26 4.84
112 113 3.741476 GGCAACGCCTCCAGCTTG 61.741 66.667 0.00 0.00 46.69 4.01
113 114 4.410743 GCAACGCCTCCAGCTTGC 62.411 66.667 0.00 6.24 43.41 4.01
114 115 2.670934 CAACGCCTCCAGCTTGCT 60.671 61.111 0.00 0.00 40.39 3.91
115 116 2.113986 AACGCCTCCAGCTTGCTT 59.886 55.556 0.00 0.00 40.39 3.91
116 117 1.968540 AACGCCTCCAGCTTGCTTC 60.969 57.895 0.00 0.00 40.39 3.86
117 118 2.359107 CGCCTCCAGCTTGCTTCA 60.359 61.111 0.00 0.00 40.39 3.02
118 119 2.396955 CGCCTCCAGCTTGCTTCAG 61.397 63.158 0.00 0.00 40.39 3.02
119 120 2.698763 GCCTCCAGCTTGCTTCAGC 61.699 63.158 0.00 0.00 40.44 4.26
120 121 2.396955 CCTCCAGCTTGCTTCAGCG 61.397 63.158 0.00 0.00 45.24 5.18
121 122 3.036783 CTCCAGCTTGCTTCAGCGC 62.037 63.158 0.00 0.00 45.24 5.92
122 123 4.112341 CCAGCTTGCTTCAGCGCC 62.112 66.667 2.29 0.00 45.24 6.53
123 124 3.054503 CAGCTTGCTTCAGCGCCT 61.055 61.111 2.29 0.00 45.24 5.52
124 125 3.054503 AGCTTGCTTCAGCGCCTG 61.055 61.111 2.29 1.50 45.24 4.85
125 126 3.360340 GCTTGCTTCAGCGCCTGT 61.360 61.111 2.29 0.00 45.83 4.00
126 127 2.559840 CTTGCTTCAGCGCCTGTG 59.440 61.111 2.29 0.00 45.83 3.66
127 128 2.974489 CTTGCTTCAGCGCCTGTGG 61.974 63.158 2.29 1.20 45.83 4.17
128 129 3.772853 TTGCTTCAGCGCCTGTGGT 62.773 57.895 2.29 0.00 45.83 4.16
129 130 3.426568 GCTTCAGCGCCTGTGGTC 61.427 66.667 2.29 0.00 32.61 4.02
130 131 3.114616 CTTCAGCGCCTGTGGTCG 61.115 66.667 2.29 0.00 32.61 4.79
131 132 3.865929 CTTCAGCGCCTGTGGTCGT 62.866 63.158 2.29 0.00 32.61 4.34
132 133 3.858868 TTCAGCGCCTGTGGTCGTC 62.859 63.158 2.29 0.00 32.61 4.20
136 137 4.111016 CGCCTGTGGTCGTCGCTA 62.111 66.667 0.00 0.00 0.00 4.26
137 138 2.494918 GCCTGTGGTCGTCGCTAT 59.505 61.111 0.00 0.00 0.00 2.97
138 139 1.878522 GCCTGTGGTCGTCGCTATG 60.879 63.158 0.00 0.00 0.00 2.23
139 140 1.511305 CCTGTGGTCGTCGCTATGT 59.489 57.895 0.00 0.00 0.00 2.29
140 141 0.802222 CCTGTGGTCGTCGCTATGTG 60.802 60.000 0.00 0.00 0.00 3.21
141 142 0.802222 CTGTGGTCGTCGCTATGTGG 60.802 60.000 0.00 0.00 0.00 4.17
142 143 1.214589 GTGGTCGTCGCTATGTGGT 59.785 57.895 0.00 0.00 0.00 4.16
143 144 0.389426 GTGGTCGTCGCTATGTGGTT 60.389 55.000 0.00 0.00 0.00 3.67
144 145 0.319083 TGGTCGTCGCTATGTGGTTT 59.681 50.000 0.00 0.00 0.00 3.27
145 146 1.545136 TGGTCGTCGCTATGTGGTTTA 59.455 47.619 0.00 0.00 0.00 2.01
146 147 1.922545 GGTCGTCGCTATGTGGTTTAC 59.077 52.381 0.00 0.00 0.00 2.01
147 148 1.580704 GTCGTCGCTATGTGGTTTACG 59.419 52.381 0.00 0.00 0.00 3.18
148 149 0.918619 CGTCGCTATGTGGTTTACGG 59.081 55.000 0.00 0.00 0.00 4.02
149 150 1.467883 CGTCGCTATGTGGTTTACGGA 60.468 52.381 0.00 0.00 0.00 4.69
150 151 2.797087 CGTCGCTATGTGGTTTACGGAT 60.797 50.000 0.00 0.00 0.00 4.18
151 152 2.793232 GTCGCTATGTGGTTTACGGATC 59.207 50.000 0.00 0.00 0.00 3.36
152 153 2.691526 TCGCTATGTGGTTTACGGATCT 59.308 45.455 0.00 0.00 0.00 2.75
153 154 2.794910 CGCTATGTGGTTTACGGATCTG 59.205 50.000 0.00 0.00 0.00 2.90
154 155 3.131396 GCTATGTGGTTTACGGATCTGG 58.869 50.000 6.47 0.00 0.00 3.86
155 156 3.181469 GCTATGTGGTTTACGGATCTGGA 60.181 47.826 6.47 0.00 0.00 3.86
156 157 4.503296 GCTATGTGGTTTACGGATCTGGAT 60.503 45.833 6.47 0.00 0.00 3.41
157 158 3.992943 TGTGGTTTACGGATCTGGATT 57.007 42.857 6.47 0.00 0.00 3.01
158 159 4.295141 TGTGGTTTACGGATCTGGATTT 57.705 40.909 6.47 0.00 0.00 2.17
159 160 5.423704 TGTGGTTTACGGATCTGGATTTA 57.576 39.130 6.47 0.00 0.00 1.40
160 161 5.806818 TGTGGTTTACGGATCTGGATTTAA 58.193 37.500 6.47 0.00 0.00 1.52
161 162 6.419791 TGTGGTTTACGGATCTGGATTTAAT 58.580 36.000 6.47 0.00 0.00 1.40
162 163 6.887545 TGTGGTTTACGGATCTGGATTTAATT 59.112 34.615 6.47 0.00 0.00 1.40
163 164 7.394923 TGTGGTTTACGGATCTGGATTTAATTT 59.605 33.333 6.47 0.00 0.00 1.82
164 165 8.248253 GTGGTTTACGGATCTGGATTTAATTTT 58.752 33.333 6.47 0.00 0.00 1.82
165 166 8.247562 TGGTTTACGGATCTGGATTTAATTTTG 58.752 33.333 6.47 0.00 0.00 2.44
166 167 8.248253 GGTTTACGGATCTGGATTTAATTTTGT 58.752 33.333 6.47 0.00 0.00 2.83
170 171 8.746052 ACGGATCTGGATTTAATTTTGTATCA 57.254 30.769 6.47 0.00 0.00 2.15
171 172 8.621286 ACGGATCTGGATTTAATTTTGTATCAC 58.379 33.333 6.47 0.00 0.00 3.06
172 173 8.840321 CGGATCTGGATTTAATTTTGTATCACT 58.160 33.333 0.00 0.00 0.00 3.41
186 187 6.961359 TTGTATCACTATTTCTGGTGTTCG 57.039 37.500 0.00 0.00 35.50 3.95
187 188 6.032956 TGTATCACTATTTCTGGTGTTCGT 57.967 37.500 0.00 0.00 35.50 3.85
188 189 6.460781 TGTATCACTATTTCTGGTGTTCGTT 58.539 36.000 0.00 0.00 35.50 3.85
189 190 7.604549 TGTATCACTATTTCTGGTGTTCGTTA 58.395 34.615 0.00 0.00 35.50 3.18
190 191 8.255206 TGTATCACTATTTCTGGTGTTCGTTAT 58.745 33.333 0.00 0.00 35.50 1.89
191 192 9.740239 GTATCACTATTTCTGGTGTTCGTTATA 57.260 33.333 0.00 0.00 35.50 0.98
192 193 8.644318 ATCACTATTTCTGGTGTTCGTTATAC 57.356 34.615 0.00 0.00 35.50 1.47
193 194 7.037438 TCACTATTTCTGGTGTTCGTTATACC 58.963 38.462 0.00 0.00 38.45 2.73
194 195 6.020121 CACTATTTCTGGTGTTCGTTATACCG 60.020 42.308 0.00 0.00 40.72 4.02
195 196 3.940209 TTCTGGTGTTCGTTATACCGT 57.060 42.857 0.00 0.00 40.72 4.83
196 197 3.492421 TCTGGTGTTCGTTATACCGTC 57.508 47.619 0.00 0.00 40.72 4.79
197 198 2.159531 TCTGGTGTTCGTTATACCGTCG 60.160 50.000 0.00 0.00 40.72 5.12
198 199 1.539388 TGGTGTTCGTTATACCGTCGT 59.461 47.619 0.00 0.00 40.72 4.34
199 200 1.913403 GGTGTTCGTTATACCGTCGTG 59.087 52.381 0.00 0.00 0.00 4.35
200 201 2.414029 GGTGTTCGTTATACCGTCGTGA 60.414 50.000 0.00 0.00 0.00 4.35
201 202 3.429085 GTGTTCGTTATACCGTCGTGAT 58.571 45.455 0.00 0.00 0.00 3.06
202 203 3.853671 GTGTTCGTTATACCGTCGTGATT 59.146 43.478 0.00 0.00 0.00 2.57
203 204 4.324402 GTGTTCGTTATACCGTCGTGATTT 59.676 41.667 0.00 0.00 0.00 2.17
204 205 4.324135 TGTTCGTTATACCGTCGTGATTTG 59.676 41.667 0.00 0.00 0.00 2.32
205 206 4.354071 TCGTTATACCGTCGTGATTTGA 57.646 40.909 0.00 0.00 0.00 2.69
206 207 4.731720 TCGTTATACCGTCGTGATTTGAA 58.268 39.130 0.00 0.00 0.00 2.69
207 208 4.794762 TCGTTATACCGTCGTGATTTGAAG 59.205 41.667 0.00 0.00 0.00 3.02
208 209 4.794762 CGTTATACCGTCGTGATTTGAAGA 59.205 41.667 0.00 0.00 0.00 2.87
209 210 5.457799 CGTTATACCGTCGTGATTTGAAGAT 59.542 40.000 0.00 0.00 0.00 2.40
210 211 6.559703 CGTTATACCGTCGTGATTTGAAGATG 60.560 42.308 0.00 0.00 0.00 2.90
211 212 3.313012 ACCGTCGTGATTTGAAGATGA 57.687 42.857 0.00 0.00 0.00 2.92
212 213 3.659786 ACCGTCGTGATTTGAAGATGAA 58.340 40.909 0.00 0.00 0.00 2.57
213 214 4.253685 ACCGTCGTGATTTGAAGATGAAT 58.746 39.130 0.00 0.00 0.00 2.57
214 215 5.416083 ACCGTCGTGATTTGAAGATGAATA 58.584 37.500 0.00 0.00 0.00 1.75
215 216 5.520288 ACCGTCGTGATTTGAAGATGAATAG 59.480 40.000 0.00 0.00 0.00 1.73
216 217 5.748630 CCGTCGTGATTTGAAGATGAATAGA 59.251 40.000 0.00 0.00 0.00 1.98
217 218 6.422100 CCGTCGTGATTTGAAGATGAATAGAT 59.578 38.462 0.00 0.00 0.00 1.98
218 219 7.358765 CCGTCGTGATTTGAAGATGAATAGATC 60.359 40.741 0.00 0.00 0.00 2.75
219 220 7.497404 GTCGTGATTTGAAGATGAATAGATCG 58.503 38.462 0.00 0.00 0.00 3.69
220 221 6.642540 TCGTGATTTGAAGATGAATAGATCGG 59.357 38.462 0.00 0.00 0.00 4.18
221 222 6.642540 CGTGATTTGAAGATGAATAGATCGGA 59.357 38.462 0.00 0.00 0.00 4.55
222 223 7.169813 CGTGATTTGAAGATGAATAGATCGGAA 59.830 37.037 0.00 0.00 0.00 4.30
223 224 8.494347 GTGATTTGAAGATGAATAGATCGGAAG 58.506 37.037 0.00 0.00 0.00 3.46
224 225 8.206867 TGATTTGAAGATGAATAGATCGGAAGT 58.793 33.333 0.00 0.00 0.00 3.01
225 226 8.600449 ATTTGAAGATGAATAGATCGGAAGTC 57.400 34.615 0.00 0.00 0.00 3.01
226 227 6.715347 TGAAGATGAATAGATCGGAAGTCA 57.285 37.500 0.00 0.00 0.00 3.41
227 228 7.295322 TGAAGATGAATAGATCGGAAGTCAT 57.705 36.000 7.95 7.95 0.00 3.06
228 229 7.730084 TGAAGATGAATAGATCGGAAGTCATT 58.270 34.615 9.13 0.00 0.00 2.57
229 230 8.206867 TGAAGATGAATAGATCGGAAGTCATTT 58.793 33.333 9.13 3.12 0.00 2.32
230 231 8.970859 AAGATGAATAGATCGGAAGTCATTTT 57.029 30.769 9.13 7.65 0.00 1.82
231 232 8.970859 AGATGAATAGATCGGAAGTCATTTTT 57.029 30.769 9.13 0.00 0.00 1.94
258 259 6.544038 AAAGAAAAATACTTGTGCATTGCC 57.456 33.333 6.12 0.00 0.00 4.52
259 260 5.473066 AGAAAAATACTTGTGCATTGCCT 57.527 34.783 6.12 0.00 0.00 4.75
260 261 5.857268 AGAAAAATACTTGTGCATTGCCTT 58.143 33.333 6.12 0.00 0.00 4.35
261 262 6.290605 AGAAAAATACTTGTGCATTGCCTTT 58.709 32.000 6.12 0.00 0.00 3.11
262 263 6.767423 AGAAAAATACTTGTGCATTGCCTTTT 59.233 30.769 6.12 0.45 0.00 2.27
263 264 7.930865 AGAAAAATACTTGTGCATTGCCTTTTA 59.069 29.630 6.12 0.00 0.00 1.52
264 265 8.443953 AAAAATACTTGTGCATTGCCTTTTAA 57.556 26.923 6.12 0.00 0.00 1.52
265 266 8.443953 AAAATACTTGTGCATTGCCTTTTAAA 57.556 26.923 6.12 0.00 0.00 1.52
266 267 8.620116 AAATACTTGTGCATTGCCTTTTAAAT 57.380 26.923 6.12 0.00 0.00 1.40
267 268 9.717942 AAATACTTGTGCATTGCCTTTTAAATA 57.282 25.926 6.12 0.00 0.00 1.40
268 269 9.717942 AATACTTGTGCATTGCCTTTTAAATAA 57.282 25.926 6.12 0.00 0.00 1.40
269 270 9.717942 ATACTTGTGCATTGCCTTTTAAATAAA 57.282 25.926 6.12 0.00 0.00 1.40
270 271 8.620116 ACTTGTGCATTGCCTTTTAAATAAAT 57.380 26.923 6.12 0.00 0.00 1.40
271 272 9.717942 ACTTGTGCATTGCCTTTTAAATAAATA 57.282 25.926 6.12 0.00 0.00 1.40
272 273 9.971744 CTTGTGCATTGCCTTTTAAATAAATAC 57.028 29.630 6.12 0.00 0.00 1.89
273 274 9.494271 TTGTGCATTGCCTTTTAAATAAATACA 57.506 25.926 6.12 0.00 0.00 2.29
274 275 9.494271 TGTGCATTGCCTTTTAAATAAATACAA 57.506 25.926 6.12 0.00 0.00 2.41
292 293 8.876275 AAATACAAAAAGAGTACTACGTGTGA 57.124 30.769 0.00 0.00 0.00 3.58
293 294 8.516811 AATACAAAAAGAGTACTACGTGTGAG 57.483 34.615 0.00 0.00 0.00 3.51
294 295 4.743644 ACAAAAAGAGTACTACGTGTGAGC 59.256 41.667 0.00 0.00 0.00 4.26
295 296 4.850347 AAAAGAGTACTACGTGTGAGCT 57.150 40.909 0.00 0.00 0.00 4.09
296 297 4.850347 AAAGAGTACTACGTGTGAGCTT 57.150 40.909 0.00 0.00 0.00 3.74
297 298 4.850347 AAGAGTACTACGTGTGAGCTTT 57.150 40.909 0.00 0.00 0.00 3.51
298 299 4.850347 AGAGTACTACGTGTGAGCTTTT 57.150 40.909 0.00 0.00 0.00 2.27
299 300 5.954296 AGAGTACTACGTGTGAGCTTTTA 57.046 39.130 0.00 0.00 0.00 1.52
300 301 6.323203 AGAGTACTACGTGTGAGCTTTTAA 57.677 37.500 0.00 0.00 0.00 1.52
301 302 6.148264 AGAGTACTACGTGTGAGCTTTTAAC 58.852 40.000 0.00 0.00 0.00 2.01
302 303 5.835257 AGTACTACGTGTGAGCTTTTAACA 58.165 37.500 0.00 0.00 0.00 2.41
303 304 6.275335 AGTACTACGTGTGAGCTTTTAACAA 58.725 36.000 0.00 0.00 0.00 2.83
304 305 5.652744 ACTACGTGTGAGCTTTTAACAAG 57.347 39.130 0.00 0.00 0.00 3.16
305 306 3.963383 ACGTGTGAGCTTTTAACAAGG 57.037 42.857 0.00 0.00 0.00 3.61
306 307 3.275999 ACGTGTGAGCTTTTAACAAGGT 58.724 40.909 0.00 2.97 0.00 3.50
307 308 3.064820 ACGTGTGAGCTTTTAACAAGGTG 59.935 43.478 0.00 0.00 0.00 4.00
308 309 3.372060 GTGTGAGCTTTTAACAAGGTGC 58.628 45.455 6.77 0.00 0.00 5.01
309 310 3.020274 TGTGAGCTTTTAACAAGGTGCA 58.980 40.909 6.77 0.00 0.00 4.57
310 311 3.445450 TGTGAGCTTTTAACAAGGTGCAA 59.555 39.130 0.00 0.00 0.00 4.08
311 312 4.081972 TGTGAGCTTTTAACAAGGTGCAAA 60.082 37.500 0.00 0.00 0.00 3.68
312 313 4.867608 GTGAGCTTTTAACAAGGTGCAAAA 59.132 37.500 0.00 0.00 0.00 2.44
313 314 4.867608 TGAGCTTTTAACAAGGTGCAAAAC 59.132 37.500 0.00 0.00 0.00 2.43
314 315 4.826556 AGCTTTTAACAAGGTGCAAAACA 58.173 34.783 0.00 0.00 0.00 2.83
315 316 5.241662 AGCTTTTAACAAGGTGCAAAACAA 58.758 33.333 0.00 0.00 0.00 2.83
316 317 5.351189 AGCTTTTAACAAGGTGCAAAACAAG 59.649 36.000 0.00 0.00 0.00 3.16
317 318 5.447144 GCTTTTAACAAGGTGCAAAACAAGG 60.447 40.000 0.00 0.00 0.00 3.61
318 319 5.407407 TTTAACAAGGTGCAAAACAAGGA 57.593 34.783 0.00 0.00 0.00 3.36
319 320 3.971245 AACAAGGTGCAAAACAAGGAA 57.029 38.095 0.00 0.00 0.00 3.36
320 321 3.971245 ACAAGGTGCAAAACAAGGAAA 57.029 38.095 0.00 0.00 0.00 3.13
321 322 3.860641 ACAAGGTGCAAAACAAGGAAAG 58.139 40.909 0.00 0.00 0.00 2.62
322 323 2.602257 AGGTGCAAAACAAGGAAAGC 57.398 45.000 0.00 0.00 0.00 3.51
323 324 2.110578 AGGTGCAAAACAAGGAAAGCT 58.889 42.857 0.00 0.00 0.00 3.74
324 325 2.501316 AGGTGCAAAACAAGGAAAGCTT 59.499 40.909 0.00 0.00 0.00 3.74
325 326 3.055167 AGGTGCAAAACAAGGAAAGCTTT 60.055 39.130 12.53 12.53 0.00 3.51
326 327 3.309682 GGTGCAAAACAAGGAAAGCTTTC 59.690 43.478 27.68 27.68 36.46 2.62
341 342 3.636282 GCTTTCCAGCTAAAAACGGAA 57.364 42.857 0.00 0.00 43.51 4.30
342 343 3.972403 GCTTTCCAGCTAAAAACGGAAA 58.028 40.909 11.85 11.85 43.48 3.13
343 344 4.364860 GCTTTCCAGCTAAAAACGGAAAA 58.635 39.130 13.04 1.12 44.63 2.29
344 345 4.806775 GCTTTCCAGCTAAAAACGGAAAAA 59.193 37.500 13.04 0.00 44.63 1.94
345 346 5.051039 GCTTTCCAGCTAAAAACGGAAAAAG 60.051 40.000 13.04 5.68 44.63 2.27
346 347 5.838531 TTCCAGCTAAAAACGGAAAAAGA 57.161 34.783 0.00 0.00 34.63 2.52
347 348 5.432885 TCCAGCTAAAAACGGAAAAAGAG 57.567 39.130 0.00 0.00 0.00 2.85
348 349 5.127491 TCCAGCTAAAAACGGAAAAAGAGA 58.873 37.500 0.00 0.00 0.00 3.10
349 350 5.238650 TCCAGCTAAAAACGGAAAAAGAGAG 59.761 40.000 0.00 0.00 0.00 3.20
350 351 5.238650 CCAGCTAAAAACGGAAAAAGAGAGA 59.761 40.000 0.00 0.00 0.00 3.10
351 352 6.136743 CAGCTAAAAACGGAAAAAGAGAGAC 58.863 40.000 0.00 0.00 0.00 3.36
352 353 5.050295 AGCTAAAAACGGAAAAAGAGAGACG 60.050 40.000 0.00 0.00 0.00 4.18
353 354 4.547406 AAAAACGGAAAAAGAGAGACGG 57.453 40.909 0.00 0.00 0.00 4.79
354 355 3.464111 AAACGGAAAAAGAGAGACGGA 57.536 42.857 0.00 0.00 0.00 4.69
355 356 2.435533 ACGGAAAAAGAGAGACGGAC 57.564 50.000 0.00 0.00 0.00 4.79
356 357 1.684983 ACGGAAAAAGAGAGACGGACA 59.315 47.619 0.00 0.00 0.00 4.02
357 358 2.299297 ACGGAAAAAGAGAGACGGACAT 59.701 45.455 0.00 0.00 0.00 3.06
358 359 2.924290 CGGAAAAAGAGAGACGGACATC 59.076 50.000 0.00 0.00 0.00 3.06
359 360 3.263261 GGAAAAAGAGAGACGGACATCC 58.737 50.000 0.00 0.00 0.00 3.51
371 372 2.726832 GGACATCCGCCACTATACTC 57.273 55.000 0.00 0.00 0.00 2.59
401 402 1.523154 GCCAGGAATTGCGTGTTGGA 61.523 55.000 7.09 0.00 0.00 3.53
402 403 0.240945 CCAGGAATTGCGTGTTGGAC 59.759 55.000 0.00 0.00 0.00 4.02
411 412 3.045142 GTGTTGGACGACGGAGGA 58.955 61.111 0.00 0.00 0.00 3.71
412 413 1.372623 GTGTTGGACGACGGAGGAC 60.373 63.158 0.00 0.00 0.00 3.85
413 414 2.260743 GTTGGACGACGGAGGACC 59.739 66.667 0.00 0.00 0.00 4.46
449 455 1.092921 GCAACCGTGTCTGTCACCAA 61.093 55.000 0.00 0.00 43.51 3.67
461 467 3.056465 TCTGTCACCAAACCAAACCAAAC 60.056 43.478 0.00 0.00 0.00 2.93
462 468 2.028020 TGTCACCAAACCAAACCAAACC 60.028 45.455 0.00 0.00 0.00 3.27
463 469 2.028020 GTCACCAAACCAAACCAAACCA 60.028 45.455 0.00 0.00 0.00 3.67
465 471 3.072476 TCACCAAACCAAACCAAACCAAA 59.928 39.130 0.00 0.00 0.00 3.28
466 472 3.189495 CACCAAACCAAACCAAACCAAAC 59.811 43.478 0.00 0.00 0.00 2.93
467 473 2.750166 CCAAACCAAACCAAACCAAACC 59.250 45.455 0.00 0.00 0.00 3.27
468 474 3.412386 CAAACCAAACCAAACCAAACCA 58.588 40.909 0.00 0.00 0.00 3.67
469 475 3.790089 AACCAAACCAAACCAAACCAA 57.210 38.095 0.00 0.00 0.00 3.67
470 476 3.790089 ACCAAACCAAACCAAACCAAA 57.210 38.095 0.00 0.00 0.00 3.28
471 477 4.308526 ACCAAACCAAACCAAACCAAAT 57.691 36.364 0.00 0.00 0.00 2.32
473 479 3.379688 CCAAACCAAACCAAACCAAATGG 59.620 43.478 0.00 0.00 43.84 3.16
477 483 4.290942 ACCAAACCAAACCAAATGGAGTA 58.709 39.130 6.42 0.00 40.56 2.59
483 489 4.100344 ACCAAACCAAATGGAGTACAAACC 59.900 41.667 6.42 0.00 40.56 3.27
489 495 4.343814 CCAAATGGAGTACAAACCAAACCT 59.656 41.667 9.75 0.00 39.69 3.50
490 496 5.288804 CAAATGGAGTACAAACCAAACCTG 58.711 41.667 9.75 3.43 39.69 4.00
491 497 3.935818 TGGAGTACAAACCAAACCTGA 57.064 42.857 0.00 0.00 32.93 3.86
492 498 3.547746 TGGAGTACAAACCAAACCTGAC 58.452 45.455 0.00 0.00 32.93 3.51
498 504 2.094442 ACAAACCAAACCTGACAAACCG 60.094 45.455 0.00 0.00 0.00 4.44
500 506 1.675552 ACCAAACCTGACAAACCGAG 58.324 50.000 0.00 0.00 0.00 4.63
501 507 1.210967 ACCAAACCTGACAAACCGAGA 59.789 47.619 0.00 0.00 0.00 4.04
502 508 2.294074 CCAAACCTGACAAACCGAGAA 58.706 47.619 0.00 0.00 0.00 2.87
506 512 1.235724 CCTGACAAACCGAGAAACCC 58.764 55.000 0.00 0.00 0.00 4.11
507 513 1.235724 CTGACAAACCGAGAAACCCC 58.764 55.000 0.00 0.00 0.00 4.95
508 514 0.547075 TGACAAACCGAGAAACCCCA 59.453 50.000 0.00 0.00 0.00 4.96
509 515 0.949397 GACAAACCGAGAAACCCCAC 59.051 55.000 0.00 0.00 0.00 4.61
510 516 0.466739 ACAAACCGAGAAACCCCACC 60.467 55.000 0.00 0.00 0.00 4.61
511 517 1.152138 AAACCGAGAAACCCCACCC 59.848 57.895 0.00 0.00 0.00 4.61
512 518 1.647334 AAACCGAGAAACCCCACCCA 61.647 55.000 0.00 0.00 0.00 4.51
513 519 1.432023 AACCGAGAAACCCCACCCAT 61.432 55.000 0.00 0.00 0.00 4.00
514 520 1.077716 CCGAGAAACCCCACCCATC 60.078 63.158 0.00 0.00 0.00 3.51
515 521 1.077716 CGAGAAACCCCACCCATCC 60.078 63.158 0.00 0.00 0.00 3.51
516 522 1.077716 GAGAAACCCCACCCATCCG 60.078 63.158 0.00 0.00 0.00 4.18
517 523 2.044352 GAAACCCCACCCATCCGG 60.044 66.667 0.00 0.00 37.81 5.14
562 568 3.095278 GCGACGAACGACAAGCGA 61.095 61.111 0.00 0.00 45.77 4.93
563 569 3.044114 GCGACGAACGACAAGCGAG 62.044 63.158 0.00 0.00 45.77 5.03
564 570 1.724929 CGACGAACGACAAGCGAGT 60.725 57.895 0.14 0.00 45.77 4.18
565 571 0.451628 CGACGAACGACAAGCGAGTA 60.452 55.000 0.14 0.00 45.77 2.59
574 580 3.982058 ACGACAAGCGAGTAGAAAAGAAG 59.018 43.478 0.00 0.00 44.57 2.85
631 641 1.439353 CGCCATTCTCATTCCCCACG 61.439 60.000 0.00 0.00 0.00 4.94
666 692 3.699134 ATTTCCTCCCCGCTTCCGC 62.699 63.158 0.00 0.00 0.00 5.54
799 836 1.382420 CACCTCCTCCTCCTCCCAG 60.382 68.421 0.00 0.00 0.00 4.45
915 977 1.289380 GACAACGGAGGAGCGTTCT 59.711 57.895 0.00 0.00 0.00 3.01
931 993 1.478526 TTCTGGTGCTGAGCTCTGCT 61.479 55.000 35.76 0.00 43.88 4.24
968 1032 3.641906 TCGGAGGAGAAAAGTCAAAGTCT 59.358 43.478 0.00 0.00 0.00 3.24
970 1034 3.500299 GGAGGAGAAAAGTCAAAGTCTGC 59.500 47.826 0.00 0.00 0.00 4.26
1479 1582 4.821589 GGGTTCGAGCGGCTCCTG 62.822 72.222 23.36 11.16 0.00 3.86
1719 1828 3.123620 CTGCAGCTCCGCAACTCC 61.124 66.667 0.00 0.00 42.45 3.85
1860 1969 3.618750 TTCGCCGTCGGGAGGTTT 61.619 61.111 14.38 0.00 36.13 3.27
2022 2131 2.287915 ACGCATCTTCCGCAATATGTTC 59.712 45.455 0.00 0.00 0.00 3.18
2331 2440 3.169908 TGGTGTTGTACATAGGAGCAGA 58.830 45.455 0.00 0.00 0.00 4.26
2332 2441 3.195610 TGGTGTTGTACATAGGAGCAGAG 59.804 47.826 0.00 0.00 0.00 3.35
2333 2442 3.190874 GTGTTGTACATAGGAGCAGAGC 58.809 50.000 0.00 0.00 0.00 4.09
2334 2443 2.831526 TGTTGTACATAGGAGCAGAGCA 59.168 45.455 0.00 0.00 0.00 4.26
2335 2444 3.260632 TGTTGTACATAGGAGCAGAGCAA 59.739 43.478 0.00 0.00 0.00 3.91
2336 2445 3.526931 TGTACATAGGAGCAGAGCAAC 57.473 47.619 0.00 0.00 0.00 4.17
2359 2468 7.246171 ACATCTGCTATATTAGTTACAGGGG 57.754 40.000 0.00 0.00 0.00 4.79
2360 2469 7.016914 ACATCTGCTATATTAGTTACAGGGGA 58.983 38.462 0.00 0.00 0.00 4.81
2414 2523 3.620488 TGGAACCTAGGTGATGAATTGC 58.380 45.455 17.14 3.39 0.00 3.56
2504 2613 9.906660 GTCTTTACAATGTTTGAATGGTTCATA 57.093 29.630 0.00 0.00 39.84 2.15
2660 3071 7.878477 ACTTTTTACATGTCTGCATCATTTG 57.122 32.000 0.00 0.00 31.99 2.32
2681 3092 6.672266 TTGTTTAATTTAATGTGGCCTGGA 57.328 33.333 3.32 0.00 0.00 3.86
2685 3096 6.524101 TTAATTTAATGTGGCCTGGAGTTC 57.476 37.500 3.32 0.00 0.00 3.01
2710 3121 7.920151 TCACAATGTTTGAATGGTTCAGTTAAG 59.080 33.333 0.00 0.00 41.38 1.85
2749 3160 8.266392 AGATATTTTCTGCTCTTCTTGAGTTG 57.734 34.615 0.00 0.00 44.41 3.16
2763 3174 7.930325 TCTTCTTGAGTTGGCTATTATCATCAG 59.070 37.037 0.00 0.00 0.00 2.90
2778 3189 3.387397 TCATCAGTCGCTTGCAGATATG 58.613 45.455 0.00 0.00 0.00 1.78
2798 3209 9.857656 AGATATGTCATGACTTTGTGGATAATT 57.142 29.630 25.55 4.68 0.00 1.40
2801 3212 7.156876 TGTCATGACTTTGTGGATAATTTCC 57.843 36.000 25.55 0.00 45.69 3.13
2844 3255 4.706842 TTAGTGATTAGATTCCCTGGGC 57.293 45.455 8.22 0.00 0.00 5.36
2913 3324 2.365617 TCCACAGAGAACAAGTCCTCAC 59.634 50.000 0.00 0.00 32.07 3.51
2930 3341 9.838339 AAGTCCTCACTATCACTATTATTTTGG 57.162 33.333 0.00 0.00 30.14 3.28
2950 3362 2.492088 GGAAAATAACCTGTGGCTGTCC 59.508 50.000 0.00 0.00 0.00 4.02
2988 3409 5.399858 TGTAGCTCGTTGTCTTCATACTTC 58.600 41.667 0.00 0.00 0.00 3.01
2989 3410 4.521130 AGCTCGTTGTCTTCATACTTCA 57.479 40.909 0.00 0.00 0.00 3.02
2990 3411 4.489810 AGCTCGTTGTCTTCATACTTCAG 58.510 43.478 0.00 0.00 0.00 3.02
2991 3412 3.614616 GCTCGTTGTCTTCATACTTCAGG 59.385 47.826 0.00 0.00 0.00 3.86
2992 3413 4.810790 CTCGTTGTCTTCATACTTCAGGT 58.189 43.478 0.00 0.00 0.00 4.00
2993 3414 5.621555 GCTCGTTGTCTTCATACTTCAGGTA 60.622 44.000 0.00 0.00 34.62 3.08
2994 3415 6.525578 TCGTTGTCTTCATACTTCAGGTAT 57.474 37.500 0.00 0.00 41.38 2.73
2995 3416 6.931838 TCGTTGTCTTCATACTTCAGGTATT 58.068 36.000 0.00 0.00 38.92 1.89
2996 3417 7.383687 TCGTTGTCTTCATACTTCAGGTATTT 58.616 34.615 0.00 0.00 38.92 1.40
3156 3577 3.278574 GGGCAGCAACTACACATGAATA 58.721 45.455 0.00 0.00 0.00 1.75
3157 3578 3.885297 GGGCAGCAACTACACATGAATAT 59.115 43.478 0.00 0.00 0.00 1.28
3158 3579 4.261322 GGGCAGCAACTACACATGAATATG 60.261 45.833 0.00 0.00 40.24 1.78
3159 3580 4.576053 GGCAGCAACTACACATGAATATGA 59.424 41.667 0.00 0.00 37.73 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.612199 GCCAATGAAGGGTAACGTGGA 60.612 52.381 0.00 0.00 37.60 4.02
3 4 0.808755 GCCAATGAAGGGTAACGTGG 59.191 55.000 0.00 0.00 37.60 4.94
4 5 0.446222 CGCCAATGAAGGGTAACGTG 59.554 55.000 0.00 0.00 37.60 4.49
5 6 0.675522 CCGCCAATGAAGGGTAACGT 60.676 55.000 0.00 0.00 37.60 3.99
6 7 1.988834 GCCGCCAATGAAGGGTAACG 61.989 60.000 0.00 0.00 37.60 3.18
7 8 1.807226 GCCGCCAATGAAGGGTAAC 59.193 57.895 0.00 0.00 0.00 2.50
8 9 1.747367 CGCCGCCAATGAAGGGTAA 60.747 57.895 0.00 0.00 0.00 2.85
9 10 2.124901 CGCCGCCAATGAAGGGTA 60.125 61.111 0.00 0.00 0.00 3.69
22 23 4.745751 TAACAGGAACCGCCGCCG 62.746 66.667 0.00 0.00 43.43 6.46
23 24 2.124860 ATAACAGGAACCGCCGCC 60.125 61.111 0.00 0.00 43.43 6.13
24 25 2.469516 CCATAACAGGAACCGCCGC 61.470 63.158 0.00 0.00 43.43 6.53
25 26 1.078708 ACCATAACAGGAACCGCCG 60.079 57.895 0.00 0.00 43.43 6.46
26 27 0.322187 ACACCATAACAGGAACCGCC 60.322 55.000 0.00 0.00 0.00 6.13
27 28 0.802494 CACACCATAACAGGAACCGC 59.198 55.000 0.00 0.00 0.00 5.68
28 29 0.802494 GCACACCATAACAGGAACCG 59.198 55.000 0.00 0.00 0.00 4.44
29 30 1.173913 GGCACACCATAACAGGAACC 58.826 55.000 0.00 0.00 35.26 3.62
30 31 0.802494 CGGCACACCATAACAGGAAC 59.198 55.000 0.00 0.00 34.57 3.62
31 32 0.322098 CCGGCACACCATAACAGGAA 60.322 55.000 0.00 0.00 34.57 3.36
32 33 1.298340 CCGGCACACCATAACAGGA 59.702 57.895 0.00 0.00 34.57 3.86
33 34 0.608035 AACCGGCACACCATAACAGG 60.608 55.000 0.00 0.00 34.57 4.00
34 35 0.521291 CAACCGGCACACCATAACAG 59.479 55.000 0.00 0.00 34.57 3.16
35 36 1.519751 GCAACCGGCACACCATAACA 61.520 55.000 0.00 0.00 43.97 2.41
36 37 1.211709 GCAACCGGCACACCATAAC 59.788 57.895 0.00 0.00 43.97 1.89
37 38 3.674906 GCAACCGGCACACCATAA 58.325 55.556 0.00 0.00 43.97 1.90
46 47 1.515081 TGTAGTAAACAGCAACCGGC 58.485 50.000 0.00 0.00 45.30 6.13
47 48 2.873472 TGTTGTAGTAAACAGCAACCGG 59.127 45.455 0.00 0.00 45.12 5.28
48 49 4.128554 CTGTTGTAGTAAACAGCAACCG 57.871 45.455 4.31 6.92 46.97 4.44
55 56 3.316868 GGGCAAAGCTGTTGTAGTAAACA 59.683 43.478 9.40 0.00 37.71 2.83
56 57 3.608474 CGGGCAAAGCTGTTGTAGTAAAC 60.608 47.826 9.40 0.00 0.00 2.01
57 58 2.550606 CGGGCAAAGCTGTTGTAGTAAA 59.449 45.455 9.40 0.00 0.00 2.01
58 59 2.147958 CGGGCAAAGCTGTTGTAGTAA 58.852 47.619 9.40 0.00 0.00 2.24
59 60 1.609580 CCGGGCAAAGCTGTTGTAGTA 60.610 52.381 0.00 0.00 0.00 1.82
60 61 0.889186 CCGGGCAAAGCTGTTGTAGT 60.889 55.000 0.00 0.00 0.00 2.73
61 62 1.875963 CCGGGCAAAGCTGTTGTAG 59.124 57.895 0.00 3.47 0.00 2.74
62 63 2.265182 GCCGGGCAAAGCTGTTGTA 61.265 57.895 15.62 0.00 0.00 2.41
63 64 3.605664 GCCGGGCAAAGCTGTTGT 61.606 61.111 15.62 0.00 0.00 3.32
64 65 3.273080 GAGCCGGGCAAAGCTGTTG 62.273 63.158 23.09 0.00 40.11 3.33
65 66 2.985847 GAGCCGGGCAAAGCTGTT 60.986 61.111 23.09 0.00 40.11 3.16
78 79 4.821589 CCTTCACTCGCCGGAGCC 62.822 72.222 5.05 0.00 44.48 4.70
79 80 4.821589 CCCTTCACTCGCCGGAGC 62.822 72.222 5.05 0.00 44.48 4.70
80 81 4.821589 GCCCTTCACTCGCCGGAG 62.822 72.222 5.05 0.00 46.13 4.63
82 83 4.697756 TTGCCCTTCACTCGCCGG 62.698 66.667 0.00 0.00 0.00 6.13
83 84 3.423154 GTTGCCCTTCACTCGCCG 61.423 66.667 0.00 0.00 0.00 6.46
84 85 3.423154 CGTTGCCCTTCACTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
85 86 4.090057 GCGTTGCCCTTCACTCGC 62.090 66.667 0.00 0.00 39.60 5.03
86 87 3.423154 GGCGTTGCCCTTCACTCG 61.423 66.667 0.00 0.00 44.06 4.18
101 102 2.698763 GCTGAAGCAAGCTGGAGGC 61.699 63.158 0.00 0.00 40.20 4.70
102 103 2.396955 CGCTGAAGCAAGCTGGAGG 61.397 63.158 2.79 0.00 41.24 4.30
103 104 3.036783 GCGCTGAAGCAAGCTGGAG 62.037 63.158 0.00 0.00 41.24 3.86
104 105 3.052082 GCGCTGAAGCAAGCTGGA 61.052 61.111 0.00 0.00 41.24 3.86
105 106 4.112341 GGCGCTGAAGCAAGCTGG 62.112 66.667 7.64 0.00 41.24 4.85
106 107 3.054503 AGGCGCTGAAGCAAGCTG 61.055 61.111 7.64 0.70 41.24 4.24
107 108 3.054503 CAGGCGCTGAAGCAAGCT 61.055 61.111 7.64 0.00 41.24 3.74
108 109 3.360340 ACAGGCGCTGAAGCAAGC 61.360 61.111 7.64 0.00 42.21 4.01
109 110 2.559840 CACAGGCGCTGAAGCAAG 59.440 61.111 7.64 0.00 42.21 4.01
110 111 2.979676 CCACAGGCGCTGAAGCAA 60.980 61.111 7.64 0.00 42.21 3.91
111 112 4.254709 ACCACAGGCGCTGAAGCA 62.255 61.111 7.64 0.00 42.21 3.91
112 113 3.426568 GACCACAGGCGCTGAAGC 61.427 66.667 7.64 0.00 35.18 3.86
113 114 3.114616 CGACCACAGGCGCTGAAG 61.115 66.667 7.64 3.67 35.18 3.02
114 115 3.858868 GACGACCACAGGCGCTGAA 62.859 63.158 7.64 0.00 35.18 3.02
115 116 4.357947 GACGACCACAGGCGCTGA 62.358 66.667 7.64 0.00 35.18 4.26
119 120 3.411418 ATAGCGACGACCACAGGCG 62.411 63.158 0.00 0.00 0.00 5.52
120 121 1.878522 CATAGCGACGACCACAGGC 60.879 63.158 0.00 0.00 0.00 4.85
121 122 0.802222 CACATAGCGACGACCACAGG 60.802 60.000 0.00 0.00 0.00 4.00
122 123 0.802222 CCACATAGCGACGACCACAG 60.802 60.000 0.00 0.00 0.00 3.66
123 124 1.214325 CCACATAGCGACGACCACA 59.786 57.895 0.00 0.00 0.00 4.17
124 125 0.389426 AACCACATAGCGACGACCAC 60.389 55.000 0.00 0.00 0.00 4.16
125 126 0.319083 AAACCACATAGCGACGACCA 59.681 50.000 0.00 0.00 0.00 4.02
126 127 1.922545 GTAAACCACATAGCGACGACC 59.077 52.381 0.00 0.00 0.00 4.79
127 128 1.580704 CGTAAACCACATAGCGACGAC 59.419 52.381 0.00 0.00 0.00 4.34
128 129 1.467883 CCGTAAACCACATAGCGACGA 60.468 52.381 0.00 0.00 0.00 4.20
129 130 0.918619 CCGTAAACCACATAGCGACG 59.081 55.000 0.00 0.00 0.00 5.12
130 131 2.282701 TCCGTAAACCACATAGCGAC 57.717 50.000 0.00 0.00 0.00 5.19
131 132 2.691526 AGATCCGTAAACCACATAGCGA 59.308 45.455 0.00 0.00 0.00 4.93
132 133 2.794910 CAGATCCGTAAACCACATAGCG 59.205 50.000 0.00 0.00 0.00 4.26
133 134 3.131396 CCAGATCCGTAAACCACATAGC 58.869 50.000 0.00 0.00 0.00 2.97
134 135 4.665833 TCCAGATCCGTAAACCACATAG 57.334 45.455 0.00 0.00 0.00 2.23
135 136 5.623956 AATCCAGATCCGTAAACCACATA 57.376 39.130 0.00 0.00 0.00 2.29
136 137 4.503714 AATCCAGATCCGTAAACCACAT 57.496 40.909 0.00 0.00 0.00 3.21
137 138 3.992943 AATCCAGATCCGTAAACCACA 57.007 42.857 0.00 0.00 0.00 4.17
138 139 6.937436 ATTAAATCCAGATCCGTAAACCAC 57.063 37.500 0.00 0.00 0.00 4.16
139 140 7.948034 AAATTAAATCCAGATCCGTAAACCA 57.052 32.000 0.00 0.00 0.00 3.67
140 141 8.248253 ACAAAATTAAATCCAGATCCGTAAACC 58.752 33.333 0.00 0.00 0.00 3.27
144 145 9.839817 TGATACAAAATTAAATCCAGATCCGTA 57.160 29.630 0.00 0.00 0.00 4.02
145 146 8.621286 GTGATACAAAATTAAATCCAGATCCGT 58.379 33.333 0.00 0.00 0.00 4.69
146 147 8.840321 AGTGATACAAAATTAAATCCAGATCCG 58.160 33.333 0.00 0.00 0.00 4.18
160 161 8.450964 CGAACACCAGAAATAGTGATACAAAAT 58.549 33.333 0.00 0.00 0.00 1.82
161 162 7.442969 ACGAACACCAGAAATAGTGATACAAAA 59.557 33.333 0.00 0.00 0.00 2.44
162 163 6.932400 ACGAACACCAGAAATAGTGATACAAA 59.068 34.615 0.00 0.00 0.00 2.83
163 164 6.460781 ACGAACACCAGAAATAGTGATACAA 58.539 36.000 0.00 0.00 0.00 2.41
164 165 6.032956 ACGAACACCAGAAATAGTGATACA 57.967 37.500 0.00 0.00 0.00 2.29
165 166 6.963049 AACGAACACCAGAAATAGTGATAC 57.037 37.500 0.00 0.00 0.00 2.24
166 167 9.740239 GTATAACGAACACCAGAAATAGTGATA 57.260 33.333 0.00 0.00 0.00 2.15
167 168 7.709613 GGTATAACGAACACCAGAAATAGTGAT 59.290 37.037 0.00 0.00 32.32 3.06
168 169 7.037438 GGTATAACGAACACCAGAAATAGTGA 58.963 38.462 0.00 0.00 32.32 3.41
169 170 6.020121 CGGTATAACGAACACCAGAAATAGTG 60.020 42.308 3.45 0.00 35.47 2.74
170 171 6.038356 CGGTATAACGAACACCAGAAATAGT 58.962 40.000 3.45 0.00 35.47 2.12
171 172 6.038356 ACGGTATAACGAACACCAGAAATAG 58.962 40.000 18.83 0.00 37.61 1.73
172 173 5.964758 ACGGTATAACGAACACCAGAAATA 58.035 37.500 18.83 0.00 37.61 1.40
173 174 4.824289 ACGGTATAACGAACACCAGAAAT 58.176 39.130 18.83 0.00 37.61 2.17
174 175 4.236935 GACGGTATAACGAACACCAGAAA 58.763 43.478 18.83 0.00 37.61 2.52
175 176 3.670359 CGACGGTATAACGAACACCAGAA 60.670 47.826 18.83 0.00 37.61 3.02
176 177 2.159531 CGACGGTATAACGAACACCAGA 60.160 50.000 18.83 0.00 37.61 3.86
177 178 2.179589 CGACGGTATAACGAACACCAG 58.820 52.381 18.83 0.00 37.61 4.00
178 179 1.539388 ACGACGGTATAACGAACACCA 59.461 47.619 18.83 0.00 37.61 4.17
179 180 1.913403 CACGACGGTATAACGAACACC 59.087 52.381 18.83 0.00 37.61 4.16
180 181 2.850321 TCACGACGGTATAACGAACAC 58.150 47.619 18.83 4.46 37.61 3.32
181 182 3.763097 ATCACGACGGTATAACGAACA 57.237 42.857 18.83 0.00 37.61 3.18
182 183 4.558470 TCAAATCACGACGGTATAACGAAC 59.442 41.667 18.83 9.43 37.61 3.95
183 184 4.731720 TCAAATCACGACGGTATAACGAA 58.268 39.130 18.83 0.00 37.61 3.85
184 185 4.354071 TCAAATCACGACGGTATAACGA 57.646 40.909 18.83 0.00 37.61 3.85
185 186 4.794762 TCTTCAAATCACGACGGTATAACG 59.205 41.667 9.04 9.04 40.31 3.18
186 187 6.474427 TCATCTTCAAATCACGACGGTATAAC 59.526 38.462 0.00 0.00 0.00 1.89
187 188 6.566141 TCATCTTCAAATCACGACGGTATAA 58.434 36.000 0.00 0.00 0.00 0.98
188 189 6.139048 TCATCTTCAAATCACGACGGTATA 57.861 37.500 0.00 0.00 0.00 1.47
189 190 5.006153 TCATCTTCAAATCACGACGGTAT 57.994 39.130 0.00 0.00 0.00 2.73
190 191 4.443913 TCATCTTCAAATCACGACGGTA 57.556 40.909 0.00 0.00 0.00 4.02
191 192 3.313012 TCATCTTCAAATCACGACGGT 57.687 42.857 0.00 0.00 0.00 4.83
192 193 4.864916 ATTCATCTTCAAATCACGACGG 57.135 40.909 0.00 0.00 0.00 4.79
193 194 6.812481 TCTATTCATCTTCAAATCACGACG 57.188 37.500 0.00 0.00 0.00 5.12
194 195 7.358765 CCGATCTATTCATCTTCAAATCACGAC 60.359 40.741 0.00 0.00 0.00 4.34
195 196 6.642540 CCGATCTATTCATCTTCAAATCACGA 59.357 38.462 0.00 0.00 0.00 4.35
196 197 6.642540 TCCGATCTATTCATCTTCAAATCACG 59.357 38.462 0.00 0.00 0.00 4.35
197 198 7.953158 TCCGATCTATTCATCTTCAAATCAC 57.047 36.000 0.00 0.00 0.00 3.06
198 199 8.206867 ACTTCCGATCTATTCATCTTCAAATCA 58.793 33.333 0.00 0.00 0.00 2.57
199 200 8.600449 ACTTCCGATCTATTCATCTTCAAATC 57.400 34.615 0.00 0.00 0.00 2.17
200 201 8.206867 TGACTTCCGATCTATTCATCTTCAAAT 58.793 33.333 0.00 0.00 0.00 2.32
201 202 7.555965 TGACTTCCGATCTATTCATCTTCAAA 58.444 34.615 0.00 0.00 0.00 2.69
202 203 7.112452 TGACTTCCGATCTATTCATCTTCAA 57.888 36.000 0.00 0.00 0.00 2.69
203 204 6.715347 TGACTTCCGATCTATTCATCTTCA 57.285 37.500 0.00 0.00 0.00 3.02
204 205 8.600449 AAATGACTTCCGATCTATTCATCTTC 57.400 34.615 0.00 0.00 0.00 2.87
205 206 8.970859 AAAATGACTTCCGATCTATTCATCTT 57.029 30.769 0.00 0.00 0.00 2.40
206 207 8.970859 AAAAATGACTTCCGATCTATTCATCT 57.029 30.769 0.00 0.00 0.00 2.90
232 233 8.720562 GGCAATGCACAAGTATTTTTCTTTTAT 58.279 29.630 7.79 0.00 0.00 1.40
233 234 7.930865 AGGCAATGCACAAGTATTTTTCTTTTA 59.069 29.630 7.79 0.00 0.00 1.52
234 235 6.767423 AGGCAATGCACAAGTATTTTTCTTTT 59.233 30.769 7.79 0.00 0.00 2.27
235 236 6.290605 AGGCAATGCACAAGTATTTTTCTTT 58.709 32.000 7.79 0.00 0.00 2.52
236 237 5.857268 AGGCAATGCACAAGTATTTTTCTT 58.143 33.333 7.79 0.00 0.00 2.52
237 238 5.473066 AGGCAATGCACAAGTATTTTTCT 57.527 34.783 7.79 0.00 0.00 2.52
238 239 6.544038 AAAGGCAATGCACAAGTATTTTTC 57.456 33.333 7.79 0.00 0.00 2.29
239 240 6.940831 AAAAGGCAATGCACAAGTATTTTT 57.059 29.167 7.79 0.00 0.00 1.94
240 241 8.443953 TTTAAAAGGCAATGCACAAGTATTTT 57.556 26.923 7.79 5.05 0.00 1.82
241 242 8.620116 ATTTAAAAGGCAATGCACAAGTATTT 57.380 26.923 7.79 0.12 0.00 1.40
242 243 9.717942 TTATTTAAAAGGCAATGCACAAGTATT 57.282 25.926 7.79 0.00 0.00 1.89
243 244 9.717942 TTTATTTAAAAGGCAATGCACAAGTAT 57.282 25.926 7.79 0.00 0.00 2.12
244 245 9.717942 ATTTATTTAAAAGGCAATGCACAAGTA 57.282 25.926 7.79 0.00 0.00 2.24
245 246 8.620116 ATTTATTTAAAAGGCAATGCACAAGT 57.380 26.923 7.79 0.00 0.00 3.16
246 247 9.971744 GTATTTATTTAAAAGGCAATGCACAAG 57.028 29.630 7.79 0.00 0.00 3.16
247 248 9.494271 TGTATTTATTTAAAAGGCAATGCACAA 57.506 25.926 7.79 0.00 0.00 3.33
248 249 9.494271 TTGTATTTATTTAAAAGGCAATGCACA 57.506 25.926 7.79 0.00 0.00 4.57
266 267 9.964303 TCACACGTAGTACTCTTTTTGTATTTA 57.036 29.630 0.00 0.00 41.61 1.40
267 268 8.876275 TCACACGTAGTACTCTTTTTGTATTT 57.124 30.769 0.00 0.00 41.61 1.40
268 269 7.115947 GCTCACACGTAGTACTCTTTTTGTATT 59.884 37.037 0.00 0.00 41.61 1.89
269 270 6.585322 GCTCACACGTAGTACTCTTTTTGTAT 59.415 38.462 0.00 0.00 41.61 2.29
270 271 5.916883 GCTCACACGTAGTACTCTTTTTGTA 59.083 40.000 0.00 0.00 41.61 2.41
271 272 4.743644 GCTCACACGTAGTACTCTTTTTGT 59.256 41.667 0.00 0.00 41.61 2.83
272 273 4.982916 AGCTCACACGTAGTACTCTTTTTG 59.017 41.667 0.00 0.00 41.61 2.44
273 274 5.197682 AGCTCACACGTAGTACTCTTTTT 57.802 39.130 0.00 0.00 41.61 1.94
274 275 4.850347 AGCTCACACGTAGTACTCTTTT 57.150 40.909 0.00 0.00 41.61 2.27
275 276 4.850347 AAGCTCACACGTAGTACTCTTT 57.150 40.909 0.00 0.00 41.61 2.52
276 277 4.850347 AAAGCTCACACGTAGTACTCTT 57.150 40.909 0.00 0.00 41.61 2.85
277 278 4.850347 AAAAGCTCACACGTAGTACTCT 57.150 40.909 0.00 0.00 41.61 3.24
278 279 5.916883 TGTTAAAAGCTCACACGTAGTACTC 59.083 40.000 0.00 0.00 41.61 2.59
279 280 5.835257 TGTTAAAAGCTCACACGTAGTACT 58.165 37.500 0.00 0.00 41.61 2.73
280 281 6.346359 CCTTGTTAAAAGCTCACACGTAGTAC 60.346 42.308 0.00 0.00 41.61 2.73
281 282 5.693104 CCTTGTTAAAAGCTCACACGTAGTA 59.307 40.000 0.00 0.00 41.61 1.82
283 284 4.510340 ACCTTGTTAAAAGCTCACACGTAG 59.490 41.667 0.00 0.00 0.00 3.51
284 285 4.271533 CACCTTGTTAAAAGCTCACACGTA 59.728 41.667 0.00 0.00 0.00 3.57
285 286 3.064820 CACCTTGTTAAAAGCTCACACGT 59.935 43.478 0.00 0.00 0.00 4.49
286 287 3.617669 CACCTTGTTAAAAGCTCACACG 58.382 45.455 0.00 0.00 0.00 4.49
287 288 3.181491 TGCACCTTGTTAAAAGCTCACAC 60.181 43.478 0.00 0.00 0.00 3.82
288 289 3.020274 TGCACCTTGTTAAAAGCTCACA 58.980 40.909 0.00 0.00 0.00 3.58
289 290 3.708563 TGCACCTTGTTAAAAGCTCAC 57.291 42.857 0.00 0.00 0.00 3.51
290 291 4.727507 TTTGCACCTTGTTAAAAGCTCA 57.272 36.364 0.00 0.00 0.00 4.26
291 292 4.867608 TGTTTTGCACCTTGTTAAAAGCTC 59.132 37.500 0.00 0.00 0.00 4.09
292 293 4.826556 TGTTTTGCACCTTGTTAAAAGCT 58.173 34.783 0.00 0.00 0.00 3.74
293 294 5.447144 CCTTGTTTTGCACCTTGTTAAAAGC 60.447 40.000 0.00 0.00 0.00 3.51
294 295 5.872070 TCCTTGTTTTGCACCTTGTTAAAAG 59.128 36.000 0.00 0.00 0.00 2.27
295 296 5.794894 TCCTTGTTTTGCACCTTGTTAAAA 58.205 33.333 0.00 0.00 0.00 1.52
296 297 5.407407 TCCTTGTTTTGCACCTTGTTAAA 57.593 34.783 0.00 0.00 0.00 1.52
297 298 5.407407 TTCCTTGTTTTGCACCTTGTTAA 57.593 34.783 0.00 0.00 0.00 2.01
298 299 5.407407 TTTCCTTGTTTTGCACCTTGTTA 57.593 34.783 0.00 0.00 0.00 2.41
299 300 3.971245 TTCCTTGTTTTGCACCTTGTT 57.029 38.095 0.00 0.00 0.00 2.83
300 301 3.860641 CTTTCCTTGTTTTGCACCTTGT 58.139 40.909 0.00 0.00 0.00 3.16
301 302 2.609002 GCTTTCCTTGTTTTGCACCTTG 59.391 45.455 0.00 0.00 0.00 3.61
302 303 2.501316 AGCTTTCCTTGTTTTGCACCTT 59.499 40.909 0.00 0.00 0.00 3.50
303 304 2.110578 AGCTTTCCTTGTTTTGCACCT 58.889 42.857 0.00 0.00 0.00 4.00
304 305 2.602257 AGCTTTCCTTGTTTTGCACC 57.398 45.000 0.00 0.00 0.00 5.01
305 306 4.520743 GAAAGCTTTCCTTGTTTTGCAC 57.479 40.909 25.80 0.00 33.01 4.57
317 318 3.981416 CCGTTTTTAGCTGGAAAGCTTTC 59.019 43.478 27.68 27.68 43.52 2.62
318 319 3.634910 TCCGTTTTTAGCTGGAAAGCTTT 59.365 39.130 12.53 12.53 43.52 3.51
319 320 3.219281 TCCGTTTTTAGCTGGAAAGCTT 58.781 40.909 5.43 0.00 43.52 3.74
320 321 3.634910 TTTCCGTTTTTAGCTGGAAAGCT 59.365 39.130 9.08 5.45 43.55 3.74
321 322 3.636282 TTCCGTTTTTAGCTGGAAAGC 57.364 42.857 0.00 0.00 37.55 3.51
323 324 6.095720 TCTCTTTTTCCGTTTTTAGCTGGAAA 59.904 34.615 9.08 9.08 45.94 3.13
324 325 5.591067 TCTCTTTTTCCGTTTTTAGCTGGAA 59.409 36.000 0.00 0.00 38.67 3.53
325 326 5.127491 TCTCTTTTTCCGTTTTTAGCTGGA 58.873 37.500 0.00 0.00 0.00 3.86
326 327 5.238650 TCTCTCTTTTTCCGTTTTTAGCTGG 59.761 40.000 0.00 0.00 0.00 4.85
327 328 6.136743 GTCTCTCTTTTTCCGTTTTTAGCTG 58.863 40.000 0.00 0.00 0.00 4.24
328 329 5.050295 CGTCTCTCTTTTTCCGTTTTTAGCT 60.050 40.000 0.00 0.00 0.00 3.32
329 330 5.138095 CGTCTCTCTTTTTCCGTTTTTAGC 58.862 41.667 0.00 0.00 0.00 3.09
330 331 5.464389 TCCGTCTCTCTTTTTCCGTTTTTAG 59.536 40.000 0.00 0.00 0.00 1.85
331 332 5.234972 GTCCGTCTCTCTTTTTCCGTTTTTA 59.765 40.000 0.00 0.00 0.00 1.52
332 333 4.034858 GTCCGTCTCTCTTTTTCCGTTTTT 59.965 41.667 0.00 0.00 0.00 1.94
333 334 3.558829 GTCCGTCTCTCTTTTTCCGTTTT 59.441 43.478 0.00 0.00 0.00 2.43
334 335 3.129109 GTCCGTCTCTCTTTTTCCGTTT 58.871 45.455 0.00 0.00 0.00 3.60
335 336 2.101917 TGTCCGTCTCTCTTTTTCCGTT 59.898 45.455 0.00 0.00 0.00 4.44
336 337 1.684983 TGTCCGTCTCTCTTTTTCCGT 59.315 47.619 0.00 0.00 0.00 4.69
337 338 2.433868 TGTCCGTCTCTCTTTTTCCG 57.566 50.000 0.00 0.00 0.00 4.30
338 339 3.263261 GGATGTCCGTCTCTCTTTTTCC 58.737 50.000 0.00 0.00 0.00 3.13
352 353 1.068472 CGAGTATAGTGGCGGATGTCC 60.068 57.143 0.00 0.00 0.00 4.02
353 354 1.607628 ACGAGTATAGTGGCGGATGTC 59.392 52.381 0.00 0.00 0.00 3.06
354 355 1.688772 ACGAGTATAGTGGCGGATGT 58.311 50.000 0.00 0.00 0.00 3.06
355 356 2.412455 CGTACGAGTATAGTGGCGGATG 60.412 54.545 10.44 0.00 0.00 3.51
356 357 1.802960 CGTACGAGTATAGTGGCGGAT 59.197 52.381 10.44 0.00 0.00 4.18
357 358 1.202521 TCGTACGAGTATAGTGGCGGA 60.203 52.381 15.28 0.00 0.00 5.54
358 359 1.220529 TCGTACGAGTATAGTGGCGG 58.779 55.000 15.28 0.00 0.00 6.13
359 360 3.031812 GTTTCGTACGAGTATAGTGGCG 58.968 50.000 18.64 0.00 0.00 5.69
360 361 3.366719 GGTTTCGTACGAGTATAGTGGC 58.633 50.000 18.64 2.51 0.00 5.01
361 362 3.611517 CGGTTTCGTACGAGTATAGTGG 58.388 50.000 18.64 0.51 0.00 4.00
362 363 3.031812 GCGGTTTCGTACGAGTATAGTG 58.968 50.000 18.64 7.21 38.89 2.74
363 364 2.032178 GGCGGTTTCGTACGAGTATAGT 59.968 50.000 18.64 0.00 38.89 2.12
364 365 2.032054 TGGCGGTTTCGTACGAGTATAG 59.968 50.000 18.64 11.06 38.89 1.31
365 366 2.013400 TGGCGGTTTCGTACGAGTATA 58.987 47.619 18.64 0.00 38.89 1.47
366 367 0.810648 TGGCGGTTTCGTACGAGTAT 59.189 50.000 18.64 0.00 38.89 2.12
367 368 0.168788 CTGGCGGTTTCGTACGAGTA 59.831 55.000 18.64 8.04 38.89 2.59
368 369 1.080974 CTGGCGGTTTCGTACGAGT 60.081 57.895 18.64 0.00 38.89 4.18
369 370 1.804326 CCTGGCGGTTTCGTACGAG 60.804 63.158 18.64 7.97 38.89 4.18
370 371 1.804396 TTCCTGGCGGTTTCGTACGA 61.804 55.000 15.28 15.28 38.89 3.43
371 372 0.738412 ATTCCTGGCGGTTTCGTACG 60.738 55.000 9.53 9.53 38.89 3.67
431 437 4.137056 GGTTTGGTGACAGACACGGTTG 62.137 54.545 0.00 0.00 46.75 3.77
449 455 3.790089 TTGGTTTGGTTTGGTTTGGTT 57.210 38.095 0.00 0.00 0.00 3.67
461 467 4.100189 TGGTTTGTACTCCATTTGGTTTGG 59.900 41.667 0.00 0.00 36.34 3.28
462 468 5.269505 TGGTTTGTACTCCATTTGGTTTG 57.730 39.130 0.00 0.00 36.34 2.93
463 469 5.941555 TTGGTTTGTACTCCATTTGGTTT 57.058 34.783 0.00 0.00 36.34 3.27
465 471 4.100344 GGTTTGGTTTGTACTCCATTTGGT 59.900 41.667 0.00 0.00 36.34 3.67
466 472 4.343814 AGGTTTGGTTTGTACTCCATTTGG 59.656 41.667 0.00 0.00 33.50 3.28
467 473 5.068460 TCAGGTTTGGTTTGTACTCCATTTG 59.932 40.000 0.00 0.00 33.50 2.32
468 474 5.068591 GTCAGGTTTGGTTTGTACTCCATTT 59.931 40.000 0.00 0.00 33.50 2.32
469 475 4.583073 GTCAGGTTTGGTTTGTACTCCATT 59.417 41.667 0.00 0.00 33.50 3.16
470 476 4.142038 GTCAGGTTTGGTTTGTACTCCAT 58.858 43.478 0.00 0.00 33.50 3.41
471 477 3.054287 TGTCAGGTTTGGTTTGTACTCCA 60.054 43.478 0.00 0.00 0.00 3.86
473 479 5.337554 GTTTGTCAGGTTTGGTTTGTACTC 58.662 41.667 0.00 0.00 0.00 2.59
477 483 2.094442 CGGTTTGTCAGGTTTGGTTTGT 60.094 45.455 0.00 0.00 0.00 2.83
483 489 3.488553 GGTTTCTCGGTTTGTCAGGTTTG 60.489 47.826 0.00 0.00 0.00 2.93
489 495 0.547075 TGGGGTTTCTCGGTTTGTCA 59.453 50.000 0.00 0.00 0.00 3.58
490 496 0.949397 GTGGGGTTTCTCGGTTTGTC 59.051 55.000 0.00 0.00 0.00 3.18
491 497 0.466739 GGTGGGGTTTCTCGGTTTGT 60.467 55.000 0.00 0.00 0.00 2.83
492 498 1.176619 GGGTGGGGTTTCTCGGTTTG 61.177 60.000 0.00 0.00 0.00 2.93
498 504 1.077716 CGGATGGGTGGGGTTTCTC 60.078 63.158 0.00 0.00 0.00 2.87
500 506 2.044352 CCGGATGGGTGGGGTTTC 60.044 66.667 0.00 0.00 0.00 2.78
538 544 2.202518 TCGTTCGTCGCCGGAATC 60.203 61.111 5.05 0.00 39.67 2.52
547 553 1.136141 TCTACTCGCTTGTCGTTCGTC 60.136 52.381 0.00 0.00 39.67 4.20
560 566 0.640768 CGCCGCTTCTTTTCTACTCG 59.359 55.000 0.00 0.00 0.00 4.18
561 567 1.654602 GTCGCCGCTTCTTTTCTACTC 59.345 52.381 0.00 0.00 0.00 2.59
562 568 1.711206 GTCGCCGCTTCTTTTCTACT 58.289 50.000 0.00 0.00 0.00 2.57
563 569 0.365859 CGTCGCCGCTTCTTTTCTAC 59.634 55.000 0.00 0.00 0.00 2.59
564 570 0.241749 TCGTCGCCGCTTCTTTTCTA 59.758 50.000 0.00 0.00 0.00 2.10
565 571 0.599204 TTCGTCGCCGCTTCTTTTCT 60.599 50.000 0.00 0.00 0.00 2.52
631 641 3.595173 GAAATGGTGGTGGTTTATTGCC 58.405 45.455 0.00 0.00 0.00 4.52
666 692 1.330306 CAAATCAAAGCGCGTGGAAG 58.670 50.000 8.43 0.00 0.00 3.46
720 752 0.976073 GGAATGGAGGAGACGGTGGA 60.976 60.000 0.00 0.00 0.00 4.02
780 817 2.766229 GGGAGGAGGAGGAGGTGC 60.766 72.222 0.00 0.00 0.00 5.01
781 818 1.382420 CTGGGAGGAGGAGGAGGTG 60.382 68.421 0.00 0.00 0.00 4.00
915 977 2.346365 CAGCAGAGCTCAGCACCA 59.654 61.111 29.82 0.00 36.40 4.17
931 993 2.429767 CCGAGCTCAGATCTGGCCA 61.430 63.158 22.42 4.71 0.00 5.36
968 1032 1.001487 CACACGGCAAGAAAAGATGCA 60.001 47.619 0.00 0.00 44.32 3.96
970 1034 1.689959 GCACACGGCAAGAAAAGATG 58.310 50.000 0.00 0.00 43.97 2.90
995 1059 1.123077 CGGAGAGGAATCCATGGACA 58.877 55.000 18.99 0.00 39.53 4.02
1326 1414 4.323477 TTGTCTTCCCCCGGTGCG 62.323 66.667 0.00 0.00 0.00 5.34
1725 1834 4.760047 ATCTCGTGGCGGCACACC 62.760 66.667 36.79 15.03 38.11 4.16
1815 1924 2.124403 GGCAGCCTCCAGATGGTG 60.124 66.667 3.29 0.00 36.34 4.17
2005 2114 1.873591 GGCGAACATATTGCGGAAGAT 59.126 47.619 0.00 0.00 0.00 2.40
2235 2344 6.515043 AAAAACATGAAACAGAAGCAATCG 57.485 33.333 0.00 0.00 0.00 3.34
2277 2386 2.806244 CAAATCGTCGTGTTCCCTTTCT 59.194 45.455 0.00 0.00 0.00 2.52
2284 2393 4.678287 TCTGTTCTACAAATCGTCGTGTTC 59.322 41.667 0.00 0.00 0.00 3.18
2333 2442 7.604164 CCCCTGTAACTAATATAGCAGATGTTG 59.396 40.741 0.00 0.00 0.00 3.33
2334 2443 7.512746 TCCCCTGTAACTAATATAGCAGATGTT 59.487 37.037 0.00 0.00 0.00 2.71
2335 2444 7.016914 TCCCCTGTAACTAATATAGCAGATGT 58.983 38.462 0.00 0.00 0.00 3.06
2336 2445 7.397476 TCTCCCCTGTAACTAATATAGCAGATG 59.603 40.741 0.00 0.00 0.00 2.90
2359 2468 4.159321 TCAGAATCACAGTGGACATCTCTC 59.841 45.833 0.00 0.00 0.00 3.20
2360 2469 4.092279 TCAGAATCACAGTGGACATCTCT 58.908 43.478 0.00 0.00 0.00 3.10
2414 2523 6.417635 CACATTGTTTGCTAGTACCAACAAAG 59.582 38.462 12.79 11.36 33.02 2.77
2504 2613 7.799081 TCTTGTTTCAGATATGTCATCCAGAT 58.201 34.615 0.00 0.00 0.00 2.90
2541 2952 5.212532 ACACTTGCATAGATCTGAGGATC 57.787 43.478 5.18 0.00 46.33 3.36
2650 3061 8.449397 GCCACATTAAATTAAACAAATGATGCA 58.551 29.630 11.70 0.00 34.26 3.96
2660 3071 6.280855 ACTCCAGGCCACATTAAATTAAAC 57.719 37.500 5.01 0.00 0.00 2.01
2681 3092 6.127366 ACTGAACCATTCAAACATTGTGAACT 60.127 34.615 0.00 0.00 39.58 3.01
2685 3096 7.306749 GCTTAACTGAACCATTCAAACATTGTG 60.307 37.037 0.00 0.00 39.58 3.33
2710 3121 8.973378 GCAGAAAATATCTAGGACGATATATGC 58.027 37.037 0.00 0.00 35.98 3.14
2749 3160 3.124297 GCAAGCGACTGATGATAATAGCC 59.876 47.826 0.00 0.00 0.00 3.93
2763 3174 3.060003 GTCATGACATATCTGCAAGCGAC 60.060 47.826 21.07 0.00 0.00 5.19
2798 3209 4.397420 AGCACAGTGATAACAACATGGAA 58.603 39.130 4.15 0.00 0.00 3.53
2801 3212 8.668353 ACTAATAAGCACAGTGATAACAACATG 58.332 33.333 4.15 0.00 0.00 3.21
2816 3227 7.389053 CCAGGGAATCTAATCACTAATAAGCAC 59.611 40.741 0.00 0.00 30.04 4.40
2930 3341 2.161609 CGGACAGCCACAGGTTATTTTC 59.838 50.000 0.00 0.00 0.00 2.29
2938 3350 2.047844 CAGTCGGACAGCCACAGG 60.048 66.667 11.27 0.00 0.00 4.00
2942 3354 2.151202 GAAATTTCAGTCGGACAGCCA 58.849 47.619 13.40 0.00 0.00 4.75
2950 3362 4.316722 CGAGCTACATCGAAATTTCAGTCG 60.317 45.833 17.99 13.13 45.56 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.