>input_sequence_57727
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATGGATTCCTCTCCGGCCGCGT---CGGCGTCCTACTGGTGCTACAGCTGCGACCGC
TTCGTGCGCGCCGCGTCGTCGCCGGAGGGGGGCGGCGACGTCGCCTGCCCGGACTGCGGCGGCGGGTTCCTCGAGGAGAT
G---------------CGCCGGACCCCGCCGGCCCCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTCC
GCCTCCGCCGCAGCCGCCGTGCCGCCGCCGCGGCAGCCGCGGCCGCCTCCGCCTCTGGAGGAGGTGGCGGGGGCGACCGC
G------CGCCGTTCAACCCGGTCATCGTGCTGCGGCGCTCGGCGCTCGGCGTC---GC---ACCGGGGGAAG---ACAA
CGGCGACGA------CGACGGCGCGCTCGCCGCGGCGAGCAGCTTCGAGCTCTTCTACGACGACGGGGCGGGCTCGGGCC
TGCGCCCGCTGCCGGAGAGCATGTCGGACTTCCTCATGGGGTCCGGGTTCGAGCGGCTCCTGGGCCAGCTCGCGCAGATC
GAGGCGGGCGGGCTCAC------GCGGGCCCGCGAGACCCCGCCGGCGTCCAAGGCGGCCGTCGAGTCCATGCCCACCGT
CGCCATCGCGGCCTCCCACGTCGCCGCCGACTGCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGCCGACGCCA
GGGAGATGCCCTGCGCCCACATCTACCACGAGGACTGCATCCTCCCCTGGCTGCAGCTCCGCAACTCCTGCCCGGTGTGC
CGCCACGAGATGCCCACCGACACCGCTGCCGCGCGGTCGCAGGCGGCCAGTGCCGGGGCCGAGGAGGAGACCACCGTGGG
CCTCACCATCTGGAGGCTGCCCGGAGGCGGGTTCGCCGTCGGGAGGTTTGCCGGCGGGAGGAGGCCCGAGGAGAGGGAGC
TCCCGGTCGTTTACACGGAGATGGACGGCGGTTTCAACCACGGCGGCGCGCCGAGGAGGATCTCGTGGGGGTCGAGGCAG
AGCCGGTCGACGGAGAGGAGCGCCATTCGACGCATCTTCCGCAATATGTTCGCCTGCTTTGGCCGCGGCCATTCGGCGAG
CTCCCACGCTTCGTCCTCCCAAATGAGGCCTGAGGAGATGACCGAGGCATCGGATCACTCCGCGGCGTTCAGCCACGGCT
CGAGAAGCCGGAGCATGAGCTGGAGGCTCGAAGACGGCCACGCCGCCGACACGATGGTGCAGAGATAG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1B_1_TraesCS1B01G036900
GATCCACGTTACCCTTCATTGGCGGCGGCGGTTCCTGTTATGGTGTGCCGGTTGCTGTTTACTACAACAGCTTTGCCCGG
CTCCGGCGAGTGAAGGGCAACGCCTCCAGCTTGCTTCAGCGCCTGTGGTCGTCGCTATGTGGTTTACGGATCTGGATTTA
ATTTTGTATCACTATTTCTGGTGTTCGTTATACCGTCGTGATTTGAAGATGAATAGATCGGAAGTCATTTTTATAAAAGA
AAAATACTTGTGCATTGCCTTTTAAATAAATACAAAAAGAGTACTACGTGTGAGCTTTTAACAAGGTGCAAAACAAGGAA
AGCTTTCCAGCTAAAAACGGAAAAAGAGAGACGGACATCCGCCACTATACTCGTACGAAACCGCCAGGAATTGCGTGTTG
GACGACGGAGGACCCGACCGG-----CCGGCCGGCGCAACCGTGTCTGTCACCAAACCAAACCAAACCAAACCAAATGGA
GTACAAACCAAACCTGACAAACCGAGAAACCCCACCCATCCGGTGGCCCGCCTCCTCGACGGCGATTCCGGCGACGAACG
ACAAGCGAGTAGAAAAGAAGCGGCGACGAAG----CCGCGTCCGTCGGAGACCGACCGTCACGCCATTCTCATTCCCCAC
G-------GCAATAAACCAC---------CACCATTTCCTCCCCGCTTCCGCT------TCCACGCGCTTTGATTTGTCG
CCCGCCGGTTAAAACCCCCTCCCTCCCCCACTCCACCGTCTCCTCCATTCCTTTCCGGCTTTC-----CCCAACAACCAG
CCCCCCCTCCACAGGGGCACCTCCTCCTCCTCCCAGCACTTCTCCTC------CGCCGCCGGTCAAGGGATCCGACGCTC
TCCTCTTCTG-------------CGTCGCCGGATCGGTCGCCGAGGGTCAAGCGTCACCGCCGGCCAAGGGGGACAACGG
AGG------AGCGTTCTGGTGCTGAGCTCTGCTGGCCAGATCTGAGCTCGGAGGA--GAAAAGTCAAAGTCTGCATCTTT
TCTTGCCGTGTGCCTGCCTGTCCATGGATTCCTCTCCGGCCGCGT---CGGCGTCCTACTGGTGCTACAGCTGCGACCGC
TTCGTGCGCGCCGCGTCGTCGCCGGAGGGGGGCGGCGACGTCGCCTGCCCGGACTGCGGCGGCGGGTTCCTCGAGGAGAT
G---------------CGCCGGACCCCGCCGGCCCCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTCC
GCCTCCGCCGCAGCCGCCGTGCCGCCGCCGCGGCAGCCGCGGCCGCCTCCGCCTCTGGAGGAGGTGGCGGGGGCGACCGC
G------CGCCGTTCAACCCGGTCATCGTGCTGCGGCGCTCGGCGCTCGGCGTC---GC---ACCGGGGGAAG---ACAA
CGGCGACGA------CGACGGCGCGCTCGCCGCGGCGAGCAGCTTCGAGCTCTTCTACGACGACGGGGCGGGCTCGGGCC
TGCGCCCGCTGCCGGAGAGCATGTCGGACTTCCTCATGGGGTCCGGGTTCGAGCGGCTCCTGGGCCAGCTCGCGCAGATC
GAGGCGGGCGGGCTCAC------GCGGGCCCGCGAGACCCCGCCGGCGTCCAAGGCGGCCGTCGAGTCCATGCCCACCGT
CGCCATCGCGGCCTCCCACGTCGCCGCCGACTGCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGCCGACGCCA
GGGAGATGCCCTGCGCCCACATCTACCACGAGGACTGCATCCTCCCCTGGCTGCAGCTCCGCAACTCCTGCCCGGTGTGC
CGCCACGAGATGCCCACCGACACCGCTGCCGCGCGGTCGCAGGCGGCCAGTGCCGGGGCCGAGGAGGAGACCACCGTGGG
CCTCACCATCTGGAGGCTGCCCGGAGGCGGGTTCGCCGTCGGGAGGTTTGCCGGCGGGAGGAGGCCCGAGGAGAGGGAGC
TCCCGGTCGTTTACACGGAGATGGACGGCGGTTTCAACCACGGCGGCGCGCCGAGGAGGATCTCGTGGGGGTCGAGGCAG
AGCCGGTCGACGGAGAGGAGCGCCATTCGACGCATCTTCCGCAATATGTTCGCCTGCTTTGGCCGCGGCCATTCGGCGAG
CTCCCACGCTTCGTCCTCCCAAATGAGGCCTGAGGAGATGACCGAGGCATCGGATCACTCCGCGGCGTTCAGCCACGGCT
CGAGAAGCCGGAGCATGAGCTGGAGGCTCGAAGACGGCCACGCCGCCGACACGATGGTGCAGAGATAGTCCTCAACTCTG
AACCGAAAGAAAAAAAAGGTTGCCGATTGCTTCTGTTTCATGTTTTTATGTATTTATAGAAGAAAAGAAAGGGAACACGA
CGATTTGTAGAACAGAATTGGTGTTGTACATAGGAGCAGAGCAACATCTGCTATATTAGTTACAGGGGAGAGATGTCCAC
TGTGATTCTGAATCGAGCATTTGGAACCTAGGTGATGAATTGCTTTGTTGGTACTAGCAAACAATGTGTTTGATGATTTT
TGATTCATTTAATTCAATTTGGCCTGGTCTTTACAATGTTTGAATGGTTCATA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TCTGGATGACAT-----ATCTGAAACAAGATATTTGTTTACGATCCTCAG
ATCTATGCAAGTGTTGCAATTGCCAGTCACCCTGCATCATTGTCCTGATCATAGAAAGTTGCAGCAATTACACATGAAGT
TACCCAACTTTTTACATGTCTGCATCATTTGTTTAATTTAATGTGGCCTGGAGTTCACAATGTTTGAATGGTTCAGTTAA
GCATATATCGTCCTAGATATTTTCTGCTCTTCTTGAGTTGGCTATTATCATCAGTCGCTTGCAGATATGTCATGACTTTG
TGGATAATTTCCATGTTGTTATCACTGTGCTTATTAGTGATTAGATTCCCTGGGCGTTCCTTTCTTGTTCACAAGTCAAT
GCATCCATATTCATTTCATCTGTCCACAGAGAACAAGTCCTCACTATCACTATTATTTTGGAAAA-TAACCTGTGGCTGT
CCGACTGAAATTTCGATGTAGCTCGTTGTCTTCATACT---------TCAGGTATTTTATTCATATTCAGATATTTAACT
TCTTCTGGATGACATATCTGAAACAAGATATTTGTTTACTGCCCTCAGATCTATGCAAGTGCTGCAATTGCCGGTCACCC
TGCATCACTGTCCTGATGTAAAGCCATAGAAAGTTGGGCAGCAACTACACATGAATATGATTATCCATCTTTTACAGTCT
TTTATACTGCTCCTTTTTAT
>chr1D_368
TACTAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTACGAAACCGCCAGGAATTGCGTGTTG
GGAGGAGGAGAGGACCGACCGCCCGTCCGGCCGGCGTAACCGTGTCTGTCACCAGACCAAACCAAATGGAC------GTA
GTGCAAACGAAACCAACAAAACCCATCCACCG-----------------------TCGACGGCAATTCCGGCAACGAACG
ACAAGAAGAG-GAAAAGAAACGGCGAGGAAG----CCG----CGTCGGAGACCGACCGCCACGCCATTCTCATTCCCCAT
TCCCCACAGCAATAAACCACCGGCACCGGCACCATTTCCTCCCCGCTTCCGTT------TCCACGCGCTTTGATTTGTCG
CCCGCCGGTTAAAACCCCCA-CCTCCCCCACCCCACCGTCTCCTCCATTCCTTTCCGGCTTTC-----CCCAACAACCAG
CCCTCCCTCCACAGGGCAAAGTCTCCGTCCTCTTCT------TCCTCCACCCTCGCCGCCGGTCAAGGGATCCGACGGCC
CCTCACCACGCCCTACTACTCCTCGTCGCCGGATCGGTCGCCGAGGGTCAGGCATAACCGCCGGCCAAGTGAGAGAACGG
AGGATTAACAGCGTCCCCGTGCTGAGCTCTGCCGGCCAGATCTGAGCTCGGAGGGAGGAAAAGTCAAAGTCAGGATCTTT
TCTTGCCGTGTGCCTGCGAGTCCATGGATTCGTCTCCGGCCGCGT---CGGCGTCCTACTGGTGCTACAGCTGCGACCGC
TTCGTGCGCGCCGCGTCGTCGCCGGAGGGGGGCGGCGACGTCGCCTGCCCGGACTGCGGCGGCGGCTTCCTCGAGGAGAT
G---------------CGGCGGACCCCGCCGGCCCCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTCC
GCCTCCGCCGCAGCCGCCGCGCGGCCGCGGCTGCTGCGGCAGCCGCCTCCGCCTCTGGAGGAGGTAGCGGGGGCGACCGC
G------CGCCGTTCAACCCGGTCATCGTGCTGCGGCGCTCGGCGCTCGGCGCGGGGGC---AGCGGGGGAAG---ACAA
CAACGGCGACGGCGACGACGGCGCGCTCGCCGCGGCCAGCAGCTTCGAGCTCTTCTACGACGACGGGGCGGGCTCGGGCC
TCCGCCCGCTGCCGGAGAGCATGTCGGACTTCCTCATGGGGTCCGGGTTCGAGCGCCTCCTCGGCCAGCTGGCGCAGATC
GAGGCCGGCGGGCTCAC------CCGGGCGCGCGAGACCCCGCCGGCGTCCAAGGCGGCCGTCGAGTCCATGCCCACCGT
CGCCATCGCGGCCTCCCACGTCGCCGCCGACTGCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGCCGAGGCCA
GGGAGATGCCCTGCGCCCACATCTACCACGAGGACTGCATCCTCCCCTGGCTGCAGCTCCGCAACTCGTGCCCCGTCTGC
CGCCACGAGATGCCCACCGACACCGCCGCGGCGCGGTCGCAGGCCGCCAGCGCCGGGGCAGAGGAGGAGACCACCGTGGG
CCTGACCATCTGGAGGCTGCCGGGAGGCGGGTTCGCCGTCGGGAGGTTCGCCGGCGGCAGGAGGCCCGAGGAGAGGGAGC
TCCCGGTCGTTTACACAGAGATGGACGGCGGTTTCAACCACGGCGGCGCGCCGAGGAGGATCTCCTGGGGGTCGAGGCAG
AGCCGGTCGACGGAGAGGAGCGCCATCAGGCGCGTCTTCCGCAATATGTTTGCCTGCTTTGGCCGCGGCCATTCGGCAGG
CTCCCACGCTTCGTCCTCCCAAATGAGGCCTGAGGAGATGACCGAGGCATCGGATCATTCCGCCGCGTTCAGCCATGGCT
CGAGAAGCCGGAGCATGAGCTGGAGGCTGGAAGACGGCCACGCCGCCGACACGATGGTGCAGAGATAGTCCTCAACTCTG
AACCGAAAGAAAAAAA-GGTTGCTGATTGCTTCTGTTTCATGTTTTTATGTATTTATAGAAGAAA-G----GAAACACGA
CGATTTGTAGAACAGAATTGGTGTTGTACATAGGAGCAGCA----ATCTGCTATATTAGTTACAGGG--GAGATGTCCAC
TGTGATTCTGAATCGAGCATTTGGAACTTAGGTGATGAATTGTTTTGTTGGTACTAGCAAACAATGTGCTTGATGATTTT
TGATTCATTTAATTCAATTTGGCCTGGTCTTTGCAATG-TTGAGTGGTTCATTTTAACATATCGTCCTAGATATTTTCTT
CTCTAGTCTCTGGCTTCTTGAGTTTGCTAGTAGTATCATATATCTCTTGCAGATATATCATGGCTTTTGTGGATAATTTC
TACTGTATGTTGTTATCACTATGATTATTAGTGATTAGATTCCCTGGGTGTTATTTTCTTGTTCACAAGTCAACACATCC
ATGTTCATTCCATCTGTCCACAGAGAACAAGACCTCATTAATATTTTTGCGAAATAATCTGCCTGACTGAAATTTTGATG
TAGCCCGTCGTCTTCAGATATTTAAGTTCTTCTGGATTCTGGATGACATCTCAAACAAGATATTTGTTTACTATCCTCAG
ATCTATGCAAGTGTTGCAATTGCCAGTCACCCTGCATCATTGTCCTGATCATAGAAAGTTGCAGCAATTACACATGAATT
TACCTAACTTTTTACATGTCCGCATCATTTACTTAATTTAATGTGGCCTGGTGTTTACAATGTTTGAACGGTTCAGTTAA
ACATACATTGTCCTAGATATTTTCTGCTCTTCTTGAGTTAGCTATTATCATCAATCGCTTGCAGATATATCATGACTGTG
TGGATAATCTCTATGTTGTTATCACTATGCTTATTAGTGATTAGATTCCCTGGGTGTTCCTTTCTTGTTCACAAGTCAAT
GCATCCATATTCATCTCATCTGTCCACAGAGAACAAGTCCTCAGTATCACTATTATTTTGCAAAA-TAATCTGCGGCTAT
CTGACTGAGATTTCGATGTATCTCGTTGTCTTCATACT---------T---------TAATCATATTCAGATATTTAACT
TCTTCTGGATGACATATCTGAAACAAGATATTTGTTTACTGCCCTCAGATCTATGCAAGTGCTGCAATTGCCGGTCACCC
TGCATCACTGTCCTGATGTAAAGCCATAGAAAGTTGGGCAGCAACTACACATGAAT----TTATCCATCTTTTACTGTCT
TTTATACTGCTCCTTTTTAT
>chr1A_567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GAAAAGAAACGGCGACGAAGCAAGCCG----CGTCGGAGACCGACCGTCACGCCATTCTCATTCCCCAC
ACC--------------------CACAGCCACCATTTCCTCCCCGCTTCCGTTTCCATTTCCACGCGCTTTGATTTGTCG
CCCGCCGGTTAAAACCCCCTCCCTCCCCCACCCCACCGTCTCCTCCATTCCCTTCCGGCTTTCCCCCACCCAACAACCAG
CCCCCCACCT---------CCTCCTCCTCCTCCCACCACTTCTCCTCCACCCTCGCCGCCGGTCACGGGATCCGACGCTC
TCCTCTTCTA-------------CGTCGCCGGACCGGTCGCCGAGGGTGAGGCATAACCGCCGGCCAAGG---------G
AGG------AGCGTTCCGGTGCTGAGCTCTGCCGCCCAGATCTGAGCTCGGGGGA---AAAAGTCAAAGTCAGGATCTTT
TCTTGCCGTGCTTCTCGC--TCCATGGATACCTCCCCCGCCGCCAGCGCGGCGTCCTACTGGTGCTACAGCTGCGACCGC
TTCGTGCGCGCCGCGTCGTCGCCGGAGGGGGGCGGCGACGTCGCCTGCCCGGACTGCGGCGGCGGGTTCCTCGAGGAGAT
G---------------CGCCGGACCCCGCCGGCCCCGGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGC
GCCTCCGCCGCAGCCGCCGGGCCGCCGCTGCTGCTGCCGCGGCCGCCTCCGCT---------GGGGGAGGGGGCGACCGC
G------CGCCGTTCAACCCGGTCATCGTGCTGCGGCGCTCGGCGCTCGGCGCGGGGGCGGCAGCGGGGGAAGACAACAA
CGGCGACGA------CGACAGCGCGCTCGCCGCGGCCAGCAGCTTCGAGCTCTTCTACGACGACGGGGCGGGCTCGGGCC
TCCGCCCGCTGCCGGAGAGCATGTCGGACTTCCTCATGGGGTCCGGCTTCGAGCGCCTCCTCGGCCAGCTCGCGCAGATC
GAGGCCGGCGGGCTCAC------CCGGGCCCGCGAGACCCCGCCGGCGTCCAAGGCGGCCGTCGAGTCCATGCCCACCGT
CGCCATCGCGGCCTCCCACGTCGCCGCCGACTGCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGCCGAGGCCA
GGGAGATGCCCTGCGCCCACATCTACCACGAGGACTGCATCCTCCCCTGGCTGCAGCTCCGCAACTCGTGCCCCGTCTGC
CGCCACGAGATGCCCACCGACACCGCGGCGGCAAGGTCACAGGCCGCCAGCGCCGGGGCCGAGGAGGAGACCACCGTGGG
CCTGACCATCTGGAGGCTGCCCGGAGGCGGGTTCGCCGTCGGGAGGTTCGCCGGCGGGAGGAGGCCCGAGGAGAGGGAGC
TCCCGGTCGTTTACACGGAGATGGACGGCGGTTTCAACCACGGCGGCGCGCCGAGGAGGATCTCGTGGGGGTCAAGGCAG
AGCCGGTCGACCGAGAGGAGCGCCATTCGACGCGTCTTCCGCAATATGTTTGCCTGCTTCGGCCGCGGTCATTCGGCGAG
CTCCCACGCTTCGTCCTCCCACATGAGGCCCGAGGAGATGACCGAGGCATCGGATCATTCCGCCGTGTTCAGCCATGGCT
CGAGAAGCCGGAGCATGAGCTGGAGGCTGGAAGACGGCCAT---GCCGACACGATGGTGCAGAGATAGTCCTGAACTCTG
AACCCAAAG-AAAAAA-GGTTGCTGATTGCTTCTGTTTTATGTTTTTATGTATTTATAGAAGAAA-GAAAGGAAACACGA
CGATTTGTAGAACAGAATTGGTGTTGTACATAGGAGCAGCA----ATCTGCTATATTAGTTACAGGG--GAGATGTCCAC
TGTGATTCTGAATTGAGCATTTGGAACCTAGGTGATAAATTGTTTTGTTGGTACTAGCAAACAATGTGTTTGATGATTTT
TGATTCATTTAATTCAATTTGGCCTGGTCTTTACAATGTGTGAATGCTTCAGTTGAACATATGTTCCTAGATATTTTCCG
CTCTAGTCTCCGGCTTCTTGAGTTAGCTAGTC---TCATCTATCTCTTGCAGATATACCATGGCTTTTGTGGATAATTTC
TACTGTATGTTGTTATCACTATGATTATTAGTGATTAGAATCCCTGGGTGTTCTTTTCTTGTTCACAAGTCAATGCATCC
ATTTTCATTTCATCTGTCCACAGAGAGCAAGACCTCATTAATATTTTTGCGAAATAATCTGCCTGACTGAAATTTCGATG
TAGCCCGTCGTCTTCAGATATTTAAGTTCTTCTGGATGACAT-----ATCTGAAACAATATATTTGTTTACTATCATCAG
ATCTATGCAAGTGTTGCAATTGCCAATTGCCCTGCATCATTGTCCTGATCATAGAAAGTTGCAGCAATTACACATGAAGT
TACCCAACTTTTTACATGTCCGCATTGTGTATTTAATTTAATGTGGCCTGGTGTTTACAATGTTTGAATGGTTCAGTTAA
ACATATATCGTCGTAGATATTTTCTGCTCTTCTTGAGTTAGCTATTATCATCAATCGCTTGCAGATATATCATGACTTTG
TGGATAATCTCTATGTTGTTATCGCTATGCTTATAAGTGATTAGATTCCCTGGGTGTTCCTTTCTTGTTCACAAGTCAAT
GCA-CCATATTCATTTCATCTGTCCACGGAGAACAAGTCCTCATTATTACTATTATTTTGCAAAAATAATCTGCGGCTGT
CTGACTGAAATTCCGATGTAGCTCCTTGTCGTCATACTTCAGGTATTT---------TAATCATATTCAGATATTTAAGT
TCTTCTGGATGACATATCTGAAACAGGATATTTGTTTACTGCCCTCAGATCTATGCAAGTGTTGCAACTGCCAGTCACCC
TGCATCACTGTCCTGATGTAAAGCCATAGAAAGTTGGGCAGCAACCACACATGAAT----TTATCCTTCTTTTACTGTCT
TTTATACTGCTCCTTTTTAT
>chr3D_1015
GGCGGCGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CGGCGTCCTACTGGTGCTACAGCTGCGAGCGG
TTCGTGCGCA------------CGGCGGGGGACGCCGGGCTGGTCTGCCCCGGCTGCGACGGCGGCTTCCTGGAGCAGAT
GGACGCGCCGCCGCCGCGCAGGGCCGCCGCGCCCTCCGCCTTCCTCCGCCGCCGCGCCGCCGAGGCGCCCACCGAGGTCC
GGCCCCGCCGCGGCAGGCGTGGCGGCGCCGCCTC------------------------------------GGGGGACCGC
TCCGGCTCGCCGTACAACCCGGTCATCGTGCTCCGGCGCTCCGCGGCCCCGCC---------------------------
---CGGCGACGAGGCCCCCGGCGCCA---------CCAGCAGCTTCGAGCTCTTCTACGACGACGGCGCCGGATCCGGCC
TCCGCCCGCTGCCCGAGAGCATGTCCGACTTCCTCATGGGGTCCGGGTTCGAGCGCCTCCTCGAGCAGCTCGCCCAGATC
GAGGCCGGCGGCTTCGGCGCCGTCCGCCCCTGCGACAACCCGCCGGCCTCCAAGGCCGCCGTCGAGTCCATGCCCACCGT
CGTCGTCGCCGCCTGCCACGTCGGCGCCGACTCCCACTGCGCCGTCTGCAAGGAGGCCTTCCAGCTGGGCGACGAGGCCA
GGGAGATGCCCTGCAGCCACATGTACCACCAGGACTGCATCCTGCCGTGGCTCGCGCTGCGCAACTCGTGCCCCGTGTGC
CGGCACGAGCTGCCCAC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
-SS-SS----SSSS-SSS-S----------------S-----------------S-----------SSS-SSSSSSS-S-
--S-----S-----SSSS-----S-SSS---SSSSSSSSSSSSSSSSSSSSSSSS--------S--------S-------
-----SSSSSS--------S------------------SSSS--------------------------------------
S--------------------------------------------------S----------------------------
-------------------------------S------------------------------------------------
----------------SS-----------------S--------------------------------------------
--------------------------------------------------S--S-S---------------S--S-----
----------------S---------------S--------------------------------------S-S------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S--S---------------------------------------------
----------------------------------------------------SS---------S----------------
------------------------------------S-------------------------------------------
-S-----------------------------------------------------S-----S------------------
-----S-----------------S--------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------S-----S------
--------------------------S--S--------------S-----S-----------------------------
---S--------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------S-----------------------------
---------------------------------------------------------S-----S-----------S----
----------------------------S---------------------------------------------------
----------------S------S-----------------------------------------S------S-------
---------------------------------------SSSSSS----------------------SS-----------
------------------------------------------S-------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------S---------S--------------------S---S------------------------
S--------------------------------------S-------------S--------------S-----------
--------S--S--------------S---------------------------S-------------------------
-------------------------------------------S----------------S--------S---S------
-S----------------------------------------------SSSSSSSSS--S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------SSSS---------------S----
--------------------
>forward_403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCAGGAATTGCGTGTTG
GAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2114
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATCTTCCGCAATATGTTCGCC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_571
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGACGAACG
ACAAGCGAGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AGAAAGGGAACACGA
CGATTTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
