Multiple sequence alignment - TraesCS1B01G031000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G031000 chr1B 100.000 2072 0 0 1777 3848 15289079 15291150 0.000000e+00 3827.0
1 TraesCS1B01G031000 chr1B 100.000 1531 0 0 1 1531 15287303 15288833 0.000000e+00 2828.0
2 TraesCS1B01G031000 chr1B 88.202 178 17 4 1321 1497 229730229 229730403 3.900000e-50 209.0
3 TraesCS1B01G031000 chr1B 93.243 74 2 2 3603 3676 15290864 15290934 5.260000e-19 106.0
4 TraesCS1B01G031000 chr1B 93.243 74 2 2 3562 3632 15290905 15290978 5.260000e-19 106.0
5 TraesCS1B01G031000 chr1A 86.552 1398 114 39 1777 3141 12097229 12098585 0.000000e+00 1472.0
6 TraesCS1B01G031000 chr1A 81.201 633 57 32 514 1113 12096057 12096660 1.630000e-123 453.0
7 TraesCS1B01G031000 chr1A 96.903 226 6 1 3368 3592 12098903 12099128 1.010000e-100 377.0
8 TraesCS1B01G031000 chr1A 91.781 219 13 2 3633 3848 12099252 12099468 2.250000e-77 300.0
9 TraesCS1B01G031000 chr1A 84.615 208 22 5 1 201 12095671 12095875 8.430000e-47 198.0
10 TraesCS1B01G031000 chr1A 86.339 183 11 6 3136 3318 12098623 12098791 1.830000e-43 187.0
11 TraesCS1B01G031000 chr1A 82.727 110 2 6 233 341 12095870 12095963 8.860000e-12 82.4
12 TraesCS1B01G031000 chr1D 85.827 1397 118 41 1777 3141 10381367 10382715 0.000000e+00 1410.0
13 TraesCS1B01G031000 chr1D 80.266 527 37 34 621 1113 10380303 10380796 6.160000e-88 335.0
14 TraesCS1B01G031000 chr1D 91.770 243 13 4 3613 3848 10383247 10383489 7.970000e-87 331.0
15 TraesCS1B01G031000 chr1D 90.455 220 17 4 1313 1531 10381101 10381317 1.750000e-73 287.0
16 TraesCS1B01G031000 chr1D 83.333 330 14 19 1 324 10379741 10380035 2.280000e-67 267.0
17 TraesCS1B01G031000 chr1D 83.630 281 20 16 3368 3630 10383043 10383315 1.380000e-59 241.0
18 TraesCS1B01G031000 chr1D 80.380 158 19 10 365 522 422986329 422986474 4.060000e-20 110.0
19 TraesCS1B01G031000 chr7D 87.727 220 19 6 1313 1531 564640550 564640338 2.300000e-62 250.0
20 TraesCS1B01G031000 chr7D 86.957 92 11 1 1777 1868 564640281 564640191 6.800000e-18 102.0
21 TraesCS1B01G031000 chr5D 87.273 220 20 5 1313 1531 448285445 448285233 1.070000e-60 244.0
22 TraesCS1B01G031000 chr5D 87.952 83 9 1 1786 1868 448285157 448285076 3.160000e-16 97.1
23 TraesCS1B01G031000 chr7B 84.298 121 12 7 387 506 607318185 607318071 1.130000e-20 111.0
24 TraesCS1B01G031000 chr7B 82.677 127 19 3 387 513 254462192 254462315 4.060000e-20 110.0
25 TraesCS1B01G031000 chr7B 82.031 128 20 3 391 518 141814553 141814429 5.260000e-19 106.0
26 TraesCS1B01G031000 chr2B 83.740 123 15 5 384 506 394149357 394149240 1.130000e-20 111.0
27 TraesCS1B01G031000 chr6D 83.471 121 17 3 391 511 319246369 319246252 4.060000e-20 110.0
28 TraesCS1B01G031000 chr6B 82.812 128 15 6 391 516 618132658 618132536 1.460000e-19 108.0
29 TraesCS1B01G031000 chr4B 82.677 127 17 4 391 516 486279953 486280075 1.460000e-19 108.0
30 TraesCS1B01G031000 chr3D 82.787 122 18 2 385 506 555117083 555117201 5.260000e-19 106.0
31 TraesCS1B01G031000 chr4D 86.957 92 11 1 1777 1868 183237377 183237287 6.800000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G031000 chr1B 15287303 15291150 3847 False 1716.750000 3827 96.621500 1 3848 4 chr1B.!!$F2 3847
1 TraesCS1B01G031000 chr1A 12095671 12099468 3797 False 438.485714 1472 87.159714 1 3848 7 chr1A.!!$F1 3847
2 TraesCS1B01G031000 chr1D 10379741 10383489 3748 False 478.500000 1410 85.880167 1 3848 6 chr1D.!!$F2 3847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 648 0.036952 TTTTCAGGCGGAGAGAGCAG 60.037 55.0 0.0 0.0 36.08 4.24 F
1122 1360 0.034059 ACTCTTGGCCGACAGTTCTG 59.966 55.0 0.0 0.0 0.00 3.02 F
1283 1569 0.037447 GGCTCTTTGGAAGCCTCTGT 59.963 55.0 6.9 0.0 44.72 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 1660 0.036388 TTGCTCCTGCTTCTAACGGG 60.036 55.0 0.00 0.00 40.48 5.28 R
2703 3090 0.037877 AGCAGAGCATTTGGAGCTGT 59.962 50.0 0.00 0.00 43.58 4.40 R
3176 3622 0.033228 TCCTGTGCCGCAAATTTTGG 59.967 50.0 10.96 2.42 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 142 4.892433 AGATCAGGACAGAGACAAACAAG 58.108 43.478 0.00 0.00 0.00 3.16
135 147 2.485479 GGACAGAGACAAACAAGCCTGA 60.485 50.000 0.00 0.00 0.00 3.86
145 157 4.217118 ACAAACAAGCCTGATCATGAAGAC 59.783 41.667 0.00 0.00 0.00 3.01
151 163 2.355513 GCCTGATCATGAAGACCACTGT 60.356 50.000 0.00 0.00 0.00 3.55
163 175 0.542938 ACCACTGTGGCTAGCTCTCA 60.543 55.000 26.20 10.64 42.67 3.27
205 217 0.894141 TTAACCACATGCCACATGCC 59.106 50.000 7.46 0.00 40.16 4.40
207 219 3.463585 CCACATGCCACATGCCCC 61.464 66.667 7.46 0.00 40.16 5.80
268 282 2.331451 GCAACGTGCCTTGGTGTC 59.669 61.111 0.00 0.00 37.42 3.67
297 311 6.041979 ACAACAAAGGTCAGAAATATGCCTTT 59.958 34.615 9.28 9.28 42.35 3.11
341 355 6.325919 TCCAAATTGTTGTCACATTAGGAC 57.674 37.500 0.00 0.00 35.83 3.85
350 364 6.367374 TTGTCACATTAGGACAACTATGGA 57.633 37.500 4.02 0.00 46.95 3.41
351 365 5.977635 TGTCACATTAGGACAACTATGGAG 58.022 41.667 0.00 0.00 41.96 3.86
352 366 4.811557 GTCACATTAGGACAACTATGGAGC 59.188 45.833 0.00 0.00 35.36 4.70
353 367 4.716784 TCACATTAGGACAACTATGGAGCT 59.283 41.667 0.00 0.00 0.00 4.09
354 368 5.897250 TCACATTAGGACAACTATGGAGCTA 59.103 40.000 0.00 0.00 0.00 3.32
358 423 8.275040 ACATTAGGACAACTATGGAGCTATTTT 58.725 33.333 0.00 0.00 0.00 1.82
397 537 6.687081 ACTAGTAGCATATATTCTCGCTCC 57.313 41.667 0.00 0.00 35.93 4.70
398 538 4.624336 AGTAGCATATATTCTCGCTCCG 57.376 45.455 0.00 0.00 35.93 4.63
399 539 4.011023 AGTAGCATATATTCTCGCTCCGT 58.989 43.478 0.00 0.00 35.93 4.69
400 540 3.495670 AGCATATATTCTCGCTCCGTC 57.504 47.619 0.00 0.00 0.00 4.79
401 541 2.164624 AGCATATATTCTCGCTCCGTCC 59.835 50.000 0.00 0.00 0.00 4.79
402 542 2.786854 CATATATTCTCGCTCCGTCCG 58.213 52.381 0.00 0.00 0.00 4.79
403 543 1.162698 TATATTCTCGCTCCGTCCGG 58.837 55.000 0.00 0.00 0.00 5.14
404 544 0.536687 ATATTCTCGCTCCGTCCGGA 60.537 55.000 0.00 0.00 42.90 5.14
405 545 0.749091 TATTCTCGCTCCGTCCGGAA 60.749 55.000 5.23 0.00 44.66 4.30
406 546 1.601419 ATTCTCGCTCCGTCCGGAAA 61.601 55.000 5.23 1.17 44.66 3.13
407 547 2.482296 TTCTCGCTCCGTCCGGAAAC 62.482 60.000 5.23 4.30 44.66 2.78
408 548 3.277211 CTCGCTCCGTCCGGAAACA 62.277 63.158 5.23 0.00 44.66 2.83
409 549 3.110178 CGCTCCGTCCGGAAACAC 61.110 66.667 5.23 0.00 44.66 3.32
410 550 2.741211 GCTCCGTCCGGAAACACC 60.741 66.667 5.23 0.00 44.66 4.16
411 551 3.057337 CTCCGTCCGGAAACACCT 58.943 61.111 5.23 0.00 44.66 4.00
412 552 1.374252 CTCCGTCCGGAAACACCTG 60.374 63.158 5.23 0.00 44.66 4.00
413 553 3.047877 CCGTCCGGAAACACCTGC 61.048 66.667 5.23 0.00 37.50 4.85
414 554 2.030562 CGTCCGGAAACACCTGCT 59.969 61.111 5.23 0.00 36.31 4.24
415 555 2.317609 CGTCCGGAAACACCTGCTG 61.318 63.158 5.23 0.00 36.31 4.41
416 556 2.281484 TCCGGAAACACCTGCTGC 60.281 61.111 0.00 0.00 36.31 5.25
417 557 2.281761 CCGGAAACACCTGCTGCT 60.282 61.111 0.00 0.00 36.31 4.24
418 558 2.620112 CCGGAAACACCTGCTGCTG 61.620 63.158 0.00 0.00 36.31 4.41
419 559 2.620112 CGGAAACACCTGCTGCTGG 61.620 63.158 22.17 22.17 36.31 4.85
420 560 1.228245 GGAAACACCTGCTGCTGGA 60.228 57.895 29.14 0.00 35.41 3.86
421 561 1.239968 GGAAACACCTGCTGCTGGAG 61.240 60.000 29.14 23.64 35.41 3.86
422 562 0.250467 GAAACACCTGCTGCTGGAGA 60.250 55.000 29.14 0.00 33.10 3.71
423 563 0.183492 AAACACCTGCTGCTGGAGAA 59.817 50.000 29.14 0.00 33.10 2.87
424 564 0.183492 AACACCTGCTGCTGGAGAAA 59.817 50.000 29.14 0.00 33.10 2.52
425 565 0.403271 ACACCTGCTGCTGGAGAAAT 59.597 50.000 29.14 6.21 33.10 2.17
426 566 1.630369 ACACCTGCTGCTGGAGAAATA 59.370 47.619 29.14 0.00 33.10 1.40
427 567 2.040278 ACACCTGCTGCTGGAGAAATAA 59.960 45.455 29.14 0.00 33.10 1.40
428 568 2.681848 CACCTGCTGCTGGAGAAATAAG 59.318 50.000 29.14 1.04 33.10 1.73
429 569 2.307098 ACCTGCTGCTGGAGAAATAAGT 59.693 45.455 29.14 3.35 33.10 2.24
430 570 2.681848 CCTGCTGCTGGAGAAATAAGTG 59.318 50.000 19.63 0.00 33.10 3.16
431 571 3.603532 CTGCTGCTGGAGAAATAAGTGA 58.396 45.455 6.23 0.00 33.10 3.41
432 572 4.005650 CTGCTGCTGGAGAAATAAGTGAA 58.994 43.478 6.23 0.00 33.10 3.18
433 573 4.397420 TGCTGCTGGAGAAATAAGTGAAA 58.603 39.130 0.00 0.00 0.00 2.69
434 574 4.826733 TGCTGCTGGAGAAATAAGTGAAAA 59.173 37.500 0.00 0.00 0.00 2.29
435 575 5.477984 TGCTGCTGGAGAAATAAGTGAAAAT 59.522 36.000 0.00 0.00 0.00 1.82
436 576 5.803967 GCTGCTGGAGAAATAAGTGAAAATG 59.196 40.000 0.00 0.00 0.00 2.32
437 577 6.271488 TGCTGGAGAAATAAGTGAAAATGG 57.729 37.500 0.00 0.00 0.00 3.16
438 578 6.009589 TGCTGGAGAAATAAGTGAAAATGGA 58.990 36.000 0.00 0.00 0.00 3.41
439 579 6.664816 TGCTGGAGAAATAAGTGAAAATGGAT 59.335 34.615 0.00 0.00 0.00 3.41
440 580 6.976925 GCTGGAGAAATAAGTGAAAATGGATG 59.023 38.462 0.00 0.00 0.00 3.51
441 581 7.363268 GCTGGAGAAATAAGTGAAAATGGATGT 60.363 37.037 0.00 0.00 0.00 3.06
442 582 9.177608 CTGGAGAAATAAGTGAAAATGGATGTA 57.822 33.333 0.00 0.00 0.00 2.29
443 583 9.699410 TGGAGAAATAAGTGAAAATGGATGTAT 57.301 29.630 0.00 0.00 0.00 2.29
465 605 9.399797 TGTATCTAGAACTAAAATACGTCTGGA 57.600 33.333 0.00 0.00 0.00 3.86
497 637 9.294030 CTATTTCTTCAACATGTATTTTCAGGC 57.706 33.333 0.00 0.00 0.00 4.85
498 638 5.295431 TCTTCAACATGTATTTTCAGGCG 57.705 39.130 0.00 0.00 0.00 5.52
499 639 4.155826 TCTTCAACATGTATTTTCAGGCGG 59.844 41.667 0.00 0.00 0.00 6.13
500 640 3.680490 TCAACATGTATTTTCAGGCGGA 58.320 40.909 0.00 0.00 0.00 5.54
501 641 3.689161 TCAACATGTATTTTCAGGCGGAG 59.311 43.478 0.00 0.00 0.00 4.63
502 642 3.627395 ACATGTATTTTCAGGCGGAGA 57.373 42.857 0.00 0.00 0.00 3.71
503 643 3.535561 ACATGTATTTTCAGGCGGAGAG 58.464 45.455 0.00 0.00 0.00 3.20
504 644 3.197766 ACATGTATTTTCAGGCGGAGAGA 59.802 43.478 0.00 0.00 0.00 3.10
505 645 3.526931 TGTATTTTCAGGCGGAGAGAG 57.473 47.619 0.00 0.00 0.00 3.20
506 646 2.205911 GTATTTTCAGGCGGAGAGAGC 58.794 52.381 0.00 0.00 0.00 4.09
507 647 0.615331 ATTTTCAGGCGGAGAGAGCA 59.385 50.000 0.00 0.00 36.08 4.26
508 648 0.036952 TTTTCAGGCGGAGAGAGCAG 60.037 55.000 0.00 0.00 36.08 4.24
509 649 1.188219 TTTCAGGCGGAGAGAGCAGT 61.188 55.000 0.00 0.00 36.08 4.40
510 650 0.323451 TTCAGGCGGAGAGAGCAGTA 60.323 55.000 0.00 0.00 36.08 2.74
511 651 0.106469 TCAGGCGGAGAGAGCAGTAT 60.106 55.000 0.00 0.00 36.08 2.12
512 652 1.143073 TCAGGCGGAGAGAGCAGTATA 59.857 52.381 0.00 0.00 36.08 1.47
515 655 1.681793 GGCGGAGAGAGCAGTATACAA 59.318 52.381 5.50 0.00 36.08 2.41
522 664 8.622157 GCGGAGAGAGCAGTATACAATATATTA 58.378 37.037 5.50 0.00 34.19 0.98
545 687 8.897872 TTAAGAAAACTTGAACGATTAGGAGT 57.102 30.769 0.00 0.00 0.00 3.85
546 688 7.803279 AAGAAAACTTGAACGATTAGGAGTT 57.197 32.000 0.00 0.00 0.00 3.01
547 689 7.190920 AGAAAACTTGAACGATTAGGAGTTG 57.809 36.000 0.00 0.00 0.00 3.16
548 690 5.358298 AAACTTGAACGATTAGGAGTTGC 57.642 39.130 0.00 0.00 0.00 4.17
549 691 4.002906 ACTTGAACGATTAGGAGTTGCA 57.997 40.909 0.00 0.00 0.00 4.08
550 692 3.997021 ACTTGAACGATTAGGAGTTGCAG 59.003 43.478 0.00 0.00 0.00 4.41
551 693 2.972625 TGAACGATTAGGAGTTGCAGG 58.027 47.619 0.00 0.00 0.00 4.85
552 694 1.666189 GAACGATTAGGAGTTGCAGGC 59.334 52.381 0.00 0.00 0.00 4.85
553 695 0.107654 ACGATTAGGAGTTGCAGGCC 60.108 55.000 0.00 0.00 0.00 5.19
554 696 0.179000 CGATTAGGAGTTGCAGGCCT 59.821 55.000 0.00 0.00 35.82 5.19
555 697 1.673168 GATTAGGAGTTGCAGGCCTG 58.327 55.000 29.34 29.34 33.28 4.85
556 698 0.257039 ATTAGGAGTTGCAGGCCTGG 59.743 55.000 33.46 15.81 33.28 4.45
557 699 0.840288 TTAGGAGTTGCAGGCCTGGA 60.840 55.000 33.46 29.53 33.28 3.86
558 700 0.621571 TAGGAGTTGCAGGCCTGGAT 60.622 55.000 33.46 17.91 33.28 3.41
573 725 5.420104 AGGCCTGGATAATCAAGAAAACAAG 59.580 40.000 3.11 0.00 0.00 3.16
592 744 6.131544 ACAAGTGGTTTATGTTGACAGTTC 57.868 37.500 0.00 0.00 0.00 3.01
594 746 6.151985 ACAAGTGGTTTATGTTGACAGTTCAA 59.848 34.615 0.00 0.00 39.55 2.69
596 748 8.349245 CAAGTGGTTTATGTTGACAGTTCAATA 58.651 33.333 0.00 0.00 43.72 1.90
598 750 9.077885 AGTGGTTTATGTTGACAGTTCAATAAT 57.922 29.630 0.00 0.00 43.72 1.28
610 763 8.845227 TGACAGTTCAATAATTAACTTTGCTGA 58.155 29.630 9.82 0.00 33.72 4.26
613 766 9.132521 CAGTTCAATAATTAACTTTGCTGAAGG 57.867 33.333 5.59 0.00 39.79 3.46
614 767 9.077885 AGTTCAATAATTAACTTTGCTGAAGGA 57.922 29.630 5.59 0.00 39.79 3.36
656 810 2.092646 CCTAACCAAATCCATCACGGGA 60.093 50.000 0.00 0.00 42.21 5.14
657 811 2.128771 AACCAAATCCATCACGGGAG 57.871 50.000 0.00 0.00 41.08 4.30
675 829 1.943340 GAGGTCATTTTCGCCATCCTC 59.057 52.381 0.00 0.00 34.30 3.71
679 833 3.193479 GGTCATTTTCGCCATCCTCTTTT 59.807 43.478 0.00 0.00 0.00 2.27
680 834 4.415735 GTCATTTTCGCCATCCTCTTTTC 58.584 43.478 0.00 0.00 0.00 2.29
711 866 3.061006 CGCTTTGCTTTTGAACATGTCAC 60.061 43.478 0.00 0.00 35.39 3.67
719 874 1.666553 GAACATGTCACCGCACGGA 60.667 57.895 17.40 0.00 38.96 4.69
720 875 1.225376 GAACATGTCACCGCACGGAA 61.225 55.000 17.40 0.03 38.96 4.30
721 876 0.605319 AACATGTCACCGCACGGAAT 60.605 50.000 17.40 1.01 38.96 3.01
722 877 1.298157 ACATGTCACCGCACGGAATG 61.298 55.000 17.40 14.73 38.96 2.67
723 878 1.018752 CATGTCACCGCACGGAATGA 61.019 55.000 17.40 7.21 38.96 2.57
724 879 0.321210 ATGTCACCGCACGGAATGAA 60.321 50.000 17.40 2.22 38.96 2.57
738 900 7.065283 GCACGGAATGAAAAGAAAAGAAAATG 58.935 34.615 0.00 0.00 0.00 2.32
754 916 0.667993 AATGTTCGTGTGGCCACAAG 59.332 50.000 39.23 38.00 43.77 3.16
765 927 4.101448 CCACAAGGGCGAGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
767 929 4.332543 ACAAGGGCGAGGAGGGGA 62.333 66.667 0.00 0.00 0.00 4.81
768 930 3.474570 CAAGGGCGAGGAGGGGAG 61.475 72.222 0.00 0.00 0.00 4.30
769 931 3.684628 AAGGGCGAGGAGGGGAGA 61.685 66.667 0.00 0.00 0.00 3.71
943 1147 2.029110 AGAGCAAGCAGTGAGAACTCTC 60.029 50.000 0.00 0.00 43.15 3.20
965 1169 6.320434 TCAGATACTGAGAGAGAGGAAGAA 57.680 41.667 0.00 0.00 35.39 2.52
966 1170 6.356556 TCAGATACTGAGAGAGAGGAAGAAG 58.643 44.000 0.00 0.00 35.39 2.85
967 1171 6.157820 TCAGATACTGAGAGAGAGGAAGAAGA 59.842 42.308 0.00 0.00 35.39 2.87
971 1175 5.640147 ACTGAGAGAGAGGAAGAAGAAGAA 58.360 41.667 0.00 0.00 0.00 2.52
972 1176 5.711976 ACTGAGAGAGAGGAAGAAGAAGAAG 59.288 44.000 0.00 0.00 0.00 2.85
973 1177 5.886609 TGAGAGAGAGGAAGAAGAAGAAGA 58.113 41.667 0.00 0.00 0.00 2.87
974 1178 6.310941 TGAGAGAGAGGAAGAAGAAGAAGAA 58.689 40.000 0.00 0.00 0.00 2.52
975 1179 6.434028 TGAGAGAGAGGAAGAAGAAGAAGAAG 59.566 42.308 0.00 0.00 0.00 2.85
976 1180 6.552008 AGAGAGAGGAAGAAGAAGAAGAAGA 58.448 40.000 0.00 0.00 0.00 2.87
977 1181 7.010160 AGAGAGAGGAAGAAGAAGAAGAAGAA 58.990 38.462 0.00 0.00 0.00 2.52
978 1182 7.177392 AGAGAGAGGAAGAAGAAGAAGAAGAAG 59.823 40.741 0.00 0.00 0.00 2.85
979 1183 7.010160 AGAGAGGAAGAAGAAGAAGAAGAAGA 58.990 38.462 0.00 0.00 0.00 2.87
1049 1253 4.711949 AACAGGGAGGCAGCAGCG 62.712 66.667 0.00 0.00 43.41 5.18
1072 1282 4.511246 ATGGCCGGCCTCACCATG 62.511 66.667 43.34 0.00 42.59 3.66
1078 1288 1.622607 CCGGCCTCACCATGAACCTA 61.623 60.000 0.00 0.00 39.03 3.08
1122 1360 0.034059 ACTCTTGGCCGACAGTTCTG 59.966 55.000 0.00 0.00 0.00 3.02
1132 1370 1.345410 GACAGTTCTGCGCTCTCTTC 58.655 55.000 9.73 0.00 0.00 2.87
1133 1371 0.676184 ACAGTTCTGCGCTCTCTTCA 59.324 50.000 9.73 0.00 0.00 3.02
1202 1472 3.947834 CTGATACCCCTGTTTGATCCAAC 59.052 47.826 2.74 2.74 0.00 3.77
1206 1476 2.171003 CCCCTGTTTGATCCAACCTTC 58.829 52.381 7.17 0.00 0.00 3.46
1238 1508 1.408969 TTGGTTCTTGGTTCTTGGGC 58.591 50.000 0.00 0.00 0.00 5.36
1258 1544 2.767496 CTCTGCTCCCCCTCCCTG 60.767 72.222 0.00 0.00 0.00 4.45
1259 1545 3.615811 TCTGCTCCCCCTCCCTGT 61.616 66.667 0.00 0.00 0.00 4.00
1262 1548 2.285743 GCTCCCCCTCCCTGTTCT 60.286 66.667 0.00 0.00 0.00 3.01
1263 1549 1.925972 GCTCCCCCTCCCTGTTCTT 60.926 63.158 0.00 0.00 0.00 2.52
1264 1550 1.994463 CTCCCCCTCCCTGTTCTTG 59.006 63.158 0.00 0.00 0.00 3.02
1265 1551 1.541368 TCCCCCTCCCTGTTCTTGG 60.541 63.158 0.00 0.00 0.00 3.61
1266 1552 2.356667 CCCCTCCCTGTTCTTGGC 59.643 66.667 0.00 0.00 0.00 4.52
1269 1555 1.204113 CCCTCCCTGTTCTTGGCTCT 61.204 60.000 0.00 0.00 0.00 4.09
1270 1556 0.695347 CCTCCCTGTTCTTGGCTCTT 59.305 55.000 0.00 0.00 0.00 2.85
1271 1557 1.074566 CCTCCCTGTTCTTGGCTCTTT 59.925 52.381 0.00 0.00 0.00 2.52
1272 1558 2.157738 CTCCCTGTTCTTGGCTCTTTG 58.842 52.381 0.00 0.00 0.00 2.77
1274 1560 1.202927 CCCTGTTCTTGGCTCTTTGGA 60.203 52.381 0.00 0.00 0.00 3.53
1275 1561 2.586425 CCTGTTCTTGGCTCTTTGGAA 58.414 47.619 0.00 0.00 0.00 3.53
1276 1562 2.555757 CCTGTTCTTGGCTCTTTGGAAG 59.444 50.000 0.00 0.00 0.00 3.46
1283 1569 0.037447 GGCTCTTTGGAAGCCTCTGT 59.963 55.000 6.90 0.00 44.72 3.41
1288 1613 2.091885 TCTTTGGAAGCCTCTGTTTGGT 60.092 45.455 0.00 0.00 0.00 3.67
1310 1651 4.583073 GTCAAAAACTTTCTGGGAGGCTAA 59.417 41.667 0.00 0.00 0.00 3.09
1311 1652 5.243954 GTCAAAAACTTTCTGGGAGGCTAAT 59.756 40.000 0.00 0.00 0.00 1.73
1319 1660 4.222124 TCTGGGAGGCTAATTTCTTGTC 57.778 45.455 0.00 0.00 0.00 3.18
1322 1663 2.289565 GGAGGCTAATTTCTTGTCCCG 58.710 52.381 0.00 0.00 0.00 5.14
1341 1685 2.143122 CGTTAGAAGCAGGAGCAACAA 58.857 47.619 0.00 0.00 45.49 2.83
1342 1686 2.096218 CGTTAGAAGCAGGAGCAACAAC 60.096 50.000 0.00 0.00 45.49 3.32
1346 1690 4.389576 GCAGGAGCAACAACGGCG 62.390 66.667 4.80 4.80 41.58 6.46
1349 1693 2.034879 AGGAGCAACAACGGCGATG 61.035 57.895 16.62 16.22 36.08 3.84
1354 1699 0.775861 GCAACAACGGCGATGTTTTC 59.224 50.000 29.13 20.40 38.90 2.29
1363 1708 2.403259 GGCGATGTTTTCCCTGTTTTG 58.597 47.619 0.00 0.00 0.00 2.44
1376 1721 0.527113 TGTTTTGCAGGGATGCATCG 59.473 50.000 20.15 8.09 44.94 3.84
1436 1781 4.214310 TGCACCAGGAAAAGATTCTCAAA 58.786 39.130 0.00 0.00 35.79 2.69
1455 1800 7.417612 TCTCAAACAGTGAAATTTGTTAGAGC 58.582 34.615 0.00 0.00 36.56 4.09
1479 1824 5.799827 TGATGGTCTTTTTACCCTTTTGG 57.200 39.130 0.00 0.00 38.90 3.28
1493 1838 2.519013 CTTTTGGTTTCTGGGAGGGAG 58.481 52.381 0.00 0.00 0.00 4.30
1831 2178 3.823304 AGCTTTTGTGACTCCCATTTCTC 59.177 43.478 0.00 0.00 0.00 2.87
1840 2187 4.257731 GACTCCCATTTCTCTCCTTTCAC 58.742 47.826 0.00 0.00 0.00 3.18
1842 2189 4.290722 ACTCCCATTTCTCTCCTTTCACAT 59.709 41.667 0.00 0.00 0.00 3.21
1910 2276 5.689383 TGTGAACTTACTGCTGATTTTCC 57.311 39.130 0.00 0.00 0.00 3.13
1954 2321 3.750371 TCCCATGTCTTTTACCACTGTG 58.250 45.455 0.00 0.00 0.00 3.66
2027 2394 2.187946 CCTGCCCCTTCTGCTACG 59.812 66.667 0.00 0.00 0.00 3.51
2029 2396 1.153549 CTGCCCCTTCTGCTACGTC 60.154 63.158 0.00 0.00 0.00 4.34
2053 2420 3.314951 GAGGTCCCCTTCCTCTGC 58.685 66.667 4.91 0.00 45.56 4.26
2055 2422 4.475135 GGTCCCCTTCCTCTGCGC 62.475 72.222 0.00 0.00 0.00 6.09
2088 2455 1.432514 GAGCACTGCTTCGACATGAA 58.567 50.000 4.67 0.00 39.88 2.57
2108 2475 5.806286 TGAAGAACGCTGTAAGAACAAAAG 58.194 37.500 0.00 0.00 34.49 2.27
2113 2480 6.745907 AGAACGCTGTAAGAACAAAAGAAAAC 59.254 34.615 0.00 0.00 34.49 2.43
2114 2481 5.337554 ACGCTGTAAGAACAAAAGAAAACC 58.662 37.500 0.00 0.00 34.49 3.27
2115 2482 5.106078 ACGCTGTAAGAACAAAAGAAAACCA 60.106 36.000 0.00 0.00 34.49 3.67
2116 2483 5.977129 CGCTGTAAGAACAAAAGAAAACCAT 59.023 36.000 0.00 0.00 34.49 3.55
2117 2484 6.142320 CGCTGTAAGAACAAAAGAAAACCATC 59.858 38.462 0.00 0.00 34.49 3.51
2118 2485 6.420903 GCTGTAAGAACAAAAGAAAACCATCC 59.579 38.462 0.00 0.00 34.49 3.51
2133 2501 1.478288 CCATCCTGCATTTCCCTCTCC 60.478 57.143 0.00 0.00 0.00 3.71
2151 2519 1.026718 CCGGTGATTCAGTGGCTTCC 61.027 60.000 0.00 0.00 0.00 3.46
2157 2525 2.290514 TGATTCAGTGGCTTCCCTTGAG 60.291 50.000 0.00 0.00 30.71 3.02
2161 2529 0.984995 AGTGGCTTCCCTTGAGGTAC 59.015 55.000 0.00 0.00 36.75 3.34
2181 2558 6.434340 AGGTACAAATTCCTCTTTGGTGATTC 59.566 38.462 0.00 0.00 39.83 2.52
2203 2580 4.346418 TCAGTGGCTTCTTCTTCTTCTTCT 59.654 41.667 0.00 0.00 0.00 2.85
2204 2581 5.062528 CAGTGGCTTCTTCTTCTTCTTCTT 58.937 41.667 0.00 0.00 0.00 2.52
2205 2582 5.530543 CAGTGGCTTCTTCTTCTTCTTCTTT 59.469 40.000 0.00 0.00 0.00 2.52
2268 2645 1.305213 GGGGCATTTCAGGGAGCAA 60.305 57.895 0.00 0.00 0.00 3.91
2292 2669 4.634004 CACTCACAACAACTCAAGGTACAA 59.366 41.667 0.00 0.00 0.00 2.41
2294 2671 6.481976 CACTCACAACAACTCAAGGTACAATA 59.518 38.462 0.00 0.00 0.00 1.90
2303 2681 8.403236 ACAACTCAAGGTACAATAAAACTTCAC 58.597 33.333 0.00 0.00 0.00 3.18
2305 2683 7.057894 ACTCAAGGTACAATAAAACTTCACCA 58.942 34.615 0.00 0.00 0.00 4.17
2326 2704 1.276138 TCACTGGCACTAGTGTCATGG 59.724 52.381 29.22 22.70 44.95 3.66
2340 2724 1.066605 GTCATGGACAGGCATTGCATC 59.933 52.381 11.39 4.72 32.09 3.91
2398 2785 4.478206 TTGATCACAGATGAGGAAGTCC 57.522 45.455 0.00 0.00 38.57 3.85
2449 2836 5.579753 ATGACAAGGAGGCATATGAAGAT 57.420 39.130 6.97 0.00 46.78 2.40
2452 2839 4.970711 ACAAGGAGGCATATGAAGATGAG 58.029 43.478 6.97 0.00 0.00 2.90
2467 2854 5.420421 TGAAGATGAGGACTCCTACTTTGAG 59.580 44.000 0.00 0.00 31.76 3.02
2515 2902 0.837272 TTCCCGATGACCATTCTCCC 59.163 55.000 0.00 0.00 0.00 4.30
2543 2930 0.809241 GCTCTCCCAGTTCATCTGCG 60.809 60.000 0.00 0.00 42.38 5.18
2546 2933 2.249413 CTCCCAGTTCATCTGCGCCT 62.249 60.000 4.18 0.00 42.38 5.52
2580 2967 3.606662 CGTCGATCCGGAGCCCAT 61.607 66.667 15.35 0.00 0.00 4.00
2634 3021 4.414677 TCCTCAGATGATCAGAGGTATGG 58.585 47.826 26.68 8.36 46.57 2.74
2666 3053 1.133792 ACTGTTGAAGGTTGGGAGTGG 60.134 52.381 0.00 0.00 0.00 4.00
2681 3068 2.355209 GGAGTGGAAGATGGTCCTGAAC 60.355 54.545 0.00 0.00 38.62 3.18
2703 3090 1.142667 TGAACAATGGTGGCTGACTGA 59.857 47.619 0.00 0.00 0.00 3.41
2704 3091 1.537202 GAACAATGGTGGCTGACTGAC 59.463 52.381 0.00 0.00 0.00 3.51
2705 3092 0.473755 ACAATGGTGGCTGACTGACA 59.526 50.000 0.00 0.00 0.00 3.58
2724 3111 1.544691 CAGCTCCAAATGCTCTGCTTT 59.455 47.619 0.00 0.00 38.92 3.51
2729 3116 3.489355 TCCAAATGCTCTGCTTTCTTCA 58.511 40.909 0.00 0.00 0.00 3.02
2731 3118 4.157289 TCCAAATGCTCTGCTTTCTTCATC 59.843 41.667 0.00 0.00 0.00 2.92
2763 3150 2.386661 ATCAGGTTGTGATGGACGAC 57.613 50.000 0.00 0.00 44.82 4.34
2833 3220 1.485838 GCAGATGCTGATGACGACGG 61.486 60.000 0.00 0.00 38.21 4.79
2835 3222 0.101399 AGATGCTGATGACGACGGTC 59.899 55.000 0.00 0.00 43.71 4.79
2849 3236 1.811266 CGGTCGCTTGGGACTGATG 60.811 63.158 18.09 4.00 44.39 3.07
2852 3239 1.407437 GGTCGCTTGGGACTGATGATT 60.407 52.381 15.54 0.00 37.12 2.57
2853 3240 1.936547 GTCGCTTGGGACTGATGATTC 59.063 52.381 10.03 0.00 34.09 2.52
2854 3241 1.833630 TCGCTTGGGACTGATGATTCT 59.166 47.619 0.00 0.00 0.00 2.40
2855 3242 2.159043 TCGCTTGGGACTGATGATTCTC 60.159 50.000 0.00 0.00 0.00 2.87
2856 3243 2.570135 GCTTGGGACTGATGATTCTCC 58.430 52.381 0.00 0.00 0.00 3.71
2857 3244 2.092753 GCTTGGGACTGATGATTCTCCA 60.093 50.000 0.00 0.00 0.00 3.86
2858 3245 3.806380 CTTGGGACTGATGATTCTCCAG 58.194 50.000 0.00 0.00 0.00 3.86
2864 3251 1.489649 CTGATGATTCTCCAGCAGGGT 59.510 52.381 0.00 0.00 44.30 4.34
2870 3257 0.555769 TTCTCCAGCAGGGTTGGTTT 59.444 50.000 0.00 0.00 37.02 3.27
2871 3258 0.110486 TCTCCAGCAGGGTTGGTTTC 59.890 55.000 0.00 0.00 37.02 2.78
2890 3277 2.103373 TCAGCACTTGACTAGCTAGGG 58.897 52.381 24.35 13.23 36.73 3.53
2891 3278 3.371087 GCACTTGACTAGCTAGGGC 57.629 57.895 24.35 15.83 41.33 5.19
2910 3297 2.172293 GGCTGTTCAGGATCTCTTGGAT 59.828 50.000 1.97 0.00 37.37 3.41
2918 3305 1.293924 GATCTCTTGGATGTGTGCCG 58.706 55.000 0.00 0.00 34.33 5.69
2938 3325 3.552068 CCGTTTTTGTTGAGATTGACCCC 60.552 47.826 0.00 0.00 0.00 4.95
2968 3355 2.158534 TGTACACCTGCAACCTTGGATT 60.159 45.455 0.00 0.00 0.00 3.01
2969 3356 2.969821 ACACCTGCAACCTTGGATTA 57.030 45.000 0.00 0.00 0.00 1.75
2970 3357 3.456380 ACACCTGCAACCTTGGATTAT 57.544 42.857 0.00 0.00 0.00 1.28
2971 3358 3.778265 ACACCTGCAACCTTGGATTATT 58.222 40.909 0.00 0.00 0.00 1.40
2996 3383 4.340381 CCTGAATTGACCAATCTTGATCCC 59.660 45.833 0.00 0.00 0.00 3.85
3059 3456 4.709250 AGAAACCAGTTGGACTCTTCTTC 58.291 43.478 4.92 0.00 38.94 2.87
3081 3482 3.434641 CACATGATTGACAGACACTCACC 59.565 47.826 0.00 0.00 40.11 4.02
3092 3493 2.624838 AGACACTCACCCTTTTGCATTG 59.375 45.455 0.00 0.00 0.00 2.82
3093 3494 1.688197 ACACTCACCCTTTTGCATTGG 59.312 47.619 0.00 0.00 0.00 3.16
3141 3542 7.796958 AAACTTTCTCAACAAAGAAGAAACG 57.203 32.000 0.02 0.00 36.66 3.60
3191 3637 0.858583 GACACCAAAATTTGCGGCAC 59.141 50.000 0.05 0.00 0.00 5.01
3193 3639 0.860533 CACCAAAATTTGCGGCACAG 59.139 50.000 0.05 0.00 0.00 3.66
3216 3663 1.600663 GCTACATCACGAGTGGATCCG 60.601 57.143 7.39 0.00 0.00 4.18
3218 3665 0.895530 ACATCACGAGTGGATCCGTT 59.104 50.000 7.39 0.00 36.83 4.44
3242 3689 4.756135 ACAATTTTGCAAAACATAGGGCTG 59.244 37.500 26.05 14.40 0.00 4.85
3301 3749 4.021229 ACAGTCATACATCGTTCAGGGTA 58.979 43.478 0.00 0.00 0.00 3.69
3302 3750 4.464951 ACAGTCATACATCGTTCAGGGTAA 59.535 41.667 0.00 0.00 0.00 2.85
3318 3766 6.991938 TCAGGGTAAAACAAATGAATTCCTG 58.008 36.000 2.27 0.00 39.32 3.86
3319 3767 6.780031 TCAGGGTAAAACAAATGAATTCCTGA 59.220 34.615 2.27 0.00 42.98 3.86
3320 3768 7.454380 TCAGGGTAAAACAAATGAATTCCTGAT 59.546 33.333 2.27 0.00 41.14 2.90
3322 3770 8.314021 AGGGTAAAACAAATGAATTCCTGATTC 58.686 33.333 2.27 0.00 43.67 2.52
3323 3771 8.314021 GGGTAAAACAAATGAATTCCTGATTCT 58.686 33.333 2.27 0.00 43.74 2.40
3326 3774 8.992835 AAAACAAATGAATTCCTGATTCTAGC 57.007 30.769 2.27 0.00 43.74 3.42
3327 3775 7.707624 AACAAATGAATTCCTGATTCTAGCA 57.292 32.000 2.27 0.00 43.74 3.49
3328 3776 7.707624 ACAAATGAATTCCTGATTCTAGCAA 57.292 32.000 2.27 0.00 43.74 3.91
3350 3833 1.270305 CCATACCACTGTATCAGCGGG 60.270 57.143 8.37 7.40 37.94 6.13
3367 3850 2.331451 GTTGCACCACGACCTTGC 59.669 61.111 0.00 0.00 36.76 4.01
3368 3851 2.186826 GTTGCACCACGACCTTGCT 61.187 57.895 0.00 0.00 37.16 3.91
3373 3885 1.071471 ACCACGACCTTGCTGGAAG 59.929 57.895 1.46 1.46 39.71 3.46
3456 3968 3.625313 TGATTTGTTCTTGCAGTTCGTCA 59.375 39.130 0.00 0.00 0.00 4.35
3764 4367 8.400947 ACACATTAGATTTAGTCATCACAATGC 58.599 33.333 0.00 0.00 34.38 3.56
3797 4400 2.251338 AGAGGTGGAGATATCCAAGGGT 59.749 50.000 11.47 0.00 42.10 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.374272 GCCTTATTTTGCTTCTCTTTCTTTCT 58.626 34.615 0.00 0.00 0.00 2.52
102 114 7.232737 TGTTTGTCTCTGTCCTGATCTAACTAA 59.767 37.037 0.00 0.00 0.00 2.24
103 115 6.719829 TGTTTGTCTCTGTCCTGATCTAACTA 59.280 38.462 0.00 0.00 0.00 2.24
130 142 2.286872 CAGTGGTCTTCATGATCAGGC 58.713 52.381 1.57 0.00 36.31 4.85
135 147 1.632409 AGCCACAGTGGTCTTCATGAT 59.368 47.619 21.26 0.00 40.46 2.45
145 157 0.829333 ATGAGAGCTAGCCACAGTGG 59.171 55.000 16.16 16.16 41.55 4.00
151 163 1.266867 TGCACCATGAGAGCTAGCCA 61.267 55.000 12.13 2.38 0.00 4.75
205 217 7.555554 CAGAAAGATTATATAGAGCATTGGGGG 59.444 40.741 0.00 0.00 0.00 5.40
207 219 8.944029 CACAGAAAGATTATATAGAGCATTGGG 58.056 37.037 0.00 0.00 0.00 4.12
209 221 8.449397 GGCACAGAAAGATTATATAGAGCATTG 58.551 37.037 0.00 0.00 0.00 2.82
211 223 7.683578 TGGCACAGAAAGATTATATAGAGCAT 58.316 34.615 0.00 0.00 0.00 3.79
212 224 7.066307 TGGCACAGAAAGATTATATAGAGCA 57.934 36.000 0.00 0.00 0.00 4.26
264 278 2.004017 TGACCTTTGTTGTCACGACAC 58.996 47.619 0.00 0.00 41.67 3.67
265 279 2.093921 TCTGACCTTTGTTGTCACGACA 60.094 45.455 0.00 0.00 37.80 4.35
266 280 2.546778 TCTGACCTTTGTTGTCACGAC 58.453 47.619 0.00 0.00 37.80 4.34
267 281 2.971660 TCTGACCTTTGTTGTCACGA 57.028 45.000 0.00 0.00 37.80 4.35
268 282 4.552166 ATTTCTGACCTTTGTTGTCACG 57.448 40.909 0.00 0.00 37.80 4.35
297 311 1.194121 TAAGCAGGCAGGCACTCTCA 61.194 55.000 0.00 0.00 34.60 3.27
375 515 5.294799 ACGGAGCGAGAATATATGCTACTAG 59.705 44.000 0.00 0.00 37.91 2.57
378 518 4.344448 GACGGAGCGAGAATATATGCTAC 58.656 47.826 0.00 0.00 37.91 3.58
379 519 3.377485 GGACGGAGCGAGAATATATGCTA 59.623 47.826 0.00 0.00 37.91 3.49
380 520 2.164624 GGACGGAGCGAGAATATATGCT 59.835 50.000 0.00 0.00 41.11 3.79
381 521 2.531206 GGACGGAGCGAGAATATATGC 58.469 52.381 0.00 0.00 0.00 3.14
382 522 2.478031 CCGGACGGAGCGAGAATATATG 60.478 54.545 4.40 0.00 37.50 1.78
383 523 1.743958 CCGGACGGAGCGAGAATATAT 59.256 52.381 4.40 0.00 37.50 0.86
384 524 1.162698 CCGGACGGAGCGAGAATATA 58.837 55.000 4.40 0.00 37.50 0.86
385 525 0.536687 TCCGGACGGAGCGAGAATAT 60.537 55.000 9.76 0.00 39.76 1.28
386 526 0.749091 TTCCGGACGGAGCGAGAATA 60.749 55.000 13.64 0.00 46.06 1.75
387 527 1.601419 TTTCCGGACGGAGCGAGAAT 61.601 55.000 13.64 0.00 46.06 2.40
388 528 2.270257 TTTCCGGACGGAGCGAGAA 61.270 57.895 13.64 2.20 46.06 2.87
389 529 2.674033 TTTCCGGACGGAGCGAGA 60.674 61.111 13.64 0.00 46.06 4.04
390 530 2.506438 GTTTCCGGACGGAGCGAG 60.506 66.667 13.64 0.00 46.06 5.03
391 531 3.296836 TGTTTCCGGACGGAGCGA 61.297 61.111 13.64 1.83 46.06 4.93
392 532 3.110178 GTGTTTCCGGACGGAGCG 61.110 66.667 13.64 0.00 46.06 5.03
393 533 2.741211 GGTGTTTCCGGACGGAGC 60.741 66.667 13.64 11.21 46.06 4.70
394 534 1.374252 CAGGTGTTTCCGGACGGAG 60.374 63.158 13.64 0.00 46.06 4.63
395 535 2.738480 CAGGTGTTTCCGGACGGA 59.262 61.111 1.83 9.76 43.52 4.69
396 536 3.047877 GCAGGTGTTTCCGGACGG 61.048 66.667 1.83 3.96 41.99 4.79
397 537 2.030562 AGCAGGTGTTTCCGGACG 59.969 61.111 1.83 0.00 41.99 4.79
398 538 2.617274 GCAGCAGGTGTTTCCGGAC 61.617 63.158 1.83 0.00 41.99 4.79
399 539 2.281484 GCAGCAGGTGTTTCCGGA 60.281 61.111 0.00 0.00 41.99 5.14
400 540 2.281761 AGCAGCAGGTGTTTCCGG 60.282 61.111 0.00 0.00 41.99 5.14
401 541 2.620112 CCAGCAGCAGGTGTTTCCG 61.620 63.158 7.56 0.00 41.60 4.30
402 542 1.228245 TCCAGCAGCAGGTGTTTCC 60.228 57.895 7.56 0.00 41.60 3.13
403 543 0.250467 TCTCCAGCAGCAGGTGTTTC 60.250 55.000 7.56 0.00 41.60 2.78
404 544 0.183492 TTCTCCAGCAGCAGGTGTTT 59.817 50.000 7.56 0.00 41.60 2.83
405 545 0.183492 TTTCTCCAGCAGCAGGTGTT 59.817 50.000 7.56 0.00 41.60 3.32
406 546 0.403271 ATTTCTCCAGCAGCAGGTGT 59.597 50.000 7.56 0.00 41.60 4.16
407 547 2.408271 TATTTCTCCAGCAGCAGGTG 57.592 50.000 3.35 0.64 42.78 4.00
408 548 2.307098 ACTTATTTCTCCAGCAGCAGGT 59.693 45.455 3.35 0.00 0.00 4.00
409 549 2.681848 CACTTATTTCTCCAGCAGCAGG 59.318 50.000 0.00 0.00 0.00 4.85
410 550 3.603532 TCACTTATTTCTCCAGCAGCAG 58.396 45.455 0.00 0.00 0.00 4.24
411 551 3.701205 TCACTTATTTCTCCAGCAGCA 57.299 42.857 0.00 0.00 0.00 4.41
412 552 5.376854 TTTTCACTTATTTCTCCAGCAGC 57.623 39.130 0.00 0.00 0.00 5.25
413 553 6.151648 TCCATTTTCACTTATTTCTCCAGCAG 59.848 38.462 0.00 0.00 0.00 4.24
414 554 6.009589 TCCATTTTCACTTATTTCTCCAGCA 58.990 36.000 0.00 0.00 0.00 4.41
415 555 6.515272 TCCATTTTCACTTATTTCTCCAGC 57.485 37.500 0.00 0.00 0.00 4.85
416 556 8.059798 ACATCCATTTTCACTTATTTCTCCAG 57.940 34.615 0.00 0.00 0.00 3.86
417 557 9.699410 ATACATCCATTTTCACTTATTTCTCCA 57.301 29.630 0.00 0.00 0.00 3.86
439 579 9.399797 TCCAGACGTATTTTAGTTCTAGATACA 57.600 33.333 0.00 0.00 0.00 2.29
443 583 9.399797 TGTATCCAGACGTATTTTAGTTCTAGA 57.600 33.333 0.00 0.00 0.00 2.43
446 586 8.915036 AGATGTATCCAGACGTATTTTAGTTCT 58.085 33.333 0.00 0.00 0.00 3.01
454 594 9.915629 GAAGAAATAGATGTATCCAGACGTATT 57.084 33.333 0.00 0.00 0.00 1.89
455 595 9.078990 TGAAGAAATAGATGTATCCAGACGTAT 57.921 33.333 0.00 0.00 0.00 3.06
456 596 8.459911 TGAAGAAATAGATGTATCCAGACGTA 57.540 34.615 0.00 0.00 0.00 3.57
457 597 7.348080 TGAAGAAATAGATGTATCCAGACGT 57.652 36.000 0.00 0.00 0.00 4.34
458 598 7.706607 TGTTGAAGAAATAGATGTATCCAGACG 59.293 37.037 0.00 0.00 0.00 4.18
459 599 8.948631 TGTTGAAGAAATAGATGTATCCAGAC 57.051 34.615 0.00 0.00 0.00 3.51
460 600 9.551734 CATGTTGAAGAAATAGATGTATCCAGA 57.448 33.333 0.00 0.00 0.00 3.86
461 601 9.334947 ACATGTTGAAGAAATAGATGTATCCAG 57.665 33.333 0.00 0.00 0.00 3.86
471 611 9.294030 GCCTGAAAATACATGTTGAAGAAATAG 57.706 33.333 2.30 0.00 0.00 1.73
472 612 7.967854 CGCCTGAAAATACATGTTGAAGAAATA 59.032 33.333 2.30 0.00 0.00 1.40
473 613 6.808212 CGCCTGAAAATACATGTTGAAGAAAT 59.192 34.615 2.30 0.00 0.00 2.17
474 614 6.148948 CGCCTGAAAATACATGTTGAAGAAA 58.851 36.000 2.30 0.00 0.00 2.52
475 615 5.335583 CCGCCTGAAAATACATGTTGAAGAA 60.336 40.000 2.30 0.00 0.00 2.52
476 616 4.155826 CCGCCTGAAAATACATGTTGAAGA 59.844 41.667 2.30 0.00 0.00 2.87
477 617 4.155826 TCCGCCTGAAAATACATGTTGAAG 59.844 41.667 2.30 0.00 0.00 3.02
478 618 4.075682 TCCGCCTGAAAATACATGTTGAA 58.924 39.130 2.30 0.00 0.00 2.69
479 619 3.680490 TCCGCCTGAAAATACATGTTGA 58.320 40.909 2.30 0.00 0.00 3.18
480 620 3.689161 TCTCCGCCTGAAAATACATGTTG 59.311 43.478 2.30 0.00 0.00 3.33
481 621 3.941483 CTCTCCGCCTGAAAATACATGTT 59.059 43.478 2.30 0.00 0.00 2.71
482 622 3.197766 TCTCTCCGCCTGAAAATACATGT 59.802 43.478 2.69 2.69 0.00 3.21
483 623 3.797039 TCTCTCCGCCTGAAAATACATG 58.203 45.455 0.00 0.00 0.00 3.21
484 624 3.742640 GCTCTCTCCGCCTGAAAATACAT 60.743 47.826 0.00 0.00 0.00 2.29
485 625 2.418746 GCTCTCTCCGCCTGAAAATACA 60.419 50.000 0.00 0.00 0.00 2.29
486 626 2.205911 GCTCTCTCCGCCTGAAAATAC 58.794 52.381 0.00 0.00 0.00 1.89
487 627 1.831106 TGCTCTCTCCGCCTGAAAATA 59.169 47.619 0.00 0.00 0.00 1.40
488 628 0.615331 TGCTCTCTCCGCCTGAAAAT 59.385 50.000 0.00 0.00 0.00 1.82
489 629 0.036952 CTGCTCTCTCCGCCTGAAAA 60.037 55.000 0.00 0.00 0.00 2.29
490 630 1.188219 ACTGCTCTCTCCGCCTGAAA 61.188 55.000 0.00 0.00 0.00 2.69
491 631 0.323451 TACTGCTCTCTCCGCCTGAA 60.323 55.000 0.00 0.00 0.00 3.02
492 632 0.106469 ATACTGCTCTCTCCGCCTGA 60.106 55.000 0.00 0.00 0.00 3.86
493 633 1.268352 GTATACTGCTCTCTCCGCCTG 59.732 57.143 0.00 0.00 0.00 4.85
494 634 1.133761 TGTATACTGCTCTCTCCGCCT 60.134 52.381 4.17 0.00 0.00 5.52
495 635 1.319541 TGTATACTGCTCTCTCCGCC 58.680 55.000 4.17 0.00 0.00 6.13
496 636 3.651803 ATTGTATACTGCTCTCTCCGC 57.348 47.619 4.17 0.00 0.00 5.54
522 664 7.639945 CAACTCCTAATCGTTCAAGTTTTCTT 58.360 34.615 0.00 0.00 41.31 2.52
524 666 5.851703 GCAACTCCTAATCGTTCAAGTTTTC 59.148 40.000 0.00 0.00 0.00 2.29
536 678 1.673168 CAGGCCTGCAACTCCTAATC 58.327 55.000 22.33 0.00 0.00 1.75
544 686 2.057137 TGATTATCCAGGCCTGCAAC 57.943 50.000 28.39 14.13 0.00 4.17
545 687 2.241941 TCTTGATTATCCAGGCCTGCAA 59.758 45.455 28.39 21.65 0.00 4.08
546 688 1.845791 TCTTGATTATCCAGGCCTGCA 59.154 47.619 28.39 14.72 0.00 4.41
547 689 2.645838 TCTTGATTATCCAGGCCTGC 57.354 50.000 28.39 13.03 0.00 4.85
548 690 4.706476 TGTTTTCTTGATTATCCAGGCCTG 59.294 41.667 26.87 26.87 0.00 4.85
549 691 4.934356 TGTTTTCTTGATTATCCAGGCCT 58.066 39.130 0.00 0.00 0.00 5.19
550 692 5.185828 ACTTGTTTTCTTGATTATCCAGGCC 59.814 40.000 0.00 0.00 0.00 5.19
551 693 6.095377 CACTTGTTTTCTTGATTATCCAGGC 58.905 40.000 0.00 0.00 0.00 4.85
552 694 6.209391 ACCACTTGTTTTCTTGATTATCCAGG 59.791 38.462 0.00 0.00 0.00 4.45
553 695 7.219484 ACCACTTGTTTTCTTGATTATCCAG 57.781 36.000 0.00 0.00 0.00 3.86
554 696 7.595819 AACCACTTGTTTTCTTGATTATCCA 57.404 32.000 0.00 0.00 31.47 3.41
573 725 9.691362 AATTATTGAACTGTCAACATAAACCAC 57.309 29.630 0.00 0.00 46.40 4.16
592 744 9.696917 AGTTTCCTTCAGCAAAGTTAATTATTG 57.303 29.630 0.00 0.00 32.69 1.90
596 748 9.529325 GTTTAGTTTCCTTCAGCAAAGTTAATT 57.471 29.630 0.00 0.00 32.69 1.40
598 750 8.057536 TGTTTAGTTTCCTTCAGCAAAGTTAA 57.942 30.769 0.00 0.00 32.69 2.01
600 752 6.524101 TGTTTAGTTTCCTTCAGCAAAGTT 57.476 33.333 0.00 0.00 32.69 2.66
606 759 5.106118 GGGAGAATGTTTAGTTTCCTTCAGC 60.106 44.000 0.00 0.00 0.00 4.26
610 763 5.074515 TGAGGGGAGAATGTTTAGTTTCCTT 59.925 40.000 0.00 0.00 0.00 3.36
613 766 4.700692 GGTGAGGGGAGAATGTTTAGTTTC 59.299 45.833 0.00 0.00 0.00 2.78
614 767 4.354087 AGGTGAGGGGAGAATGTTTAGTTT 59.646 41.667 0.00 0.00 0.00 2.66
656 810 1.561542 AGAGGATGGCGAAAATGACCT 59.438 47.619 0.00 0.00 0.00 3.85
657 811 2.044123 AGAGGATGGCGAAAATGACC 57.956 50.000 0.00 0.00 0.00 4.02
675 829 2.414825 GCAAAGCGAGAGAGAGGAAAAG 59.585 50.000 0.00 0.00 0.00 2.27
679 833 1.261480 AAGCAAAGCGAGAGAGAGGA 58.739 50.000 0.00 0.00 0.00 3.71
680 834 2.091852 AAAGCAAAGCGAGAGAGAGG 57.908 50.000 0.00 0.00 0.00 3.69
711 866 2.697431 TTTCTTTTCATTCCGTGCGG 57.303 45.000 3.94 3.94 0.00 5.69
719 874 9.150348 ACACGAACATTTTCTTTTCTTTTCATT 57.850 25.926 0.00 0.00 0.00 2.57
720 875 8.594687 CACACGAACATTTTCTTTTCTTTTCAT 58.405 29.630 0.00 0.00 0.00 2.57
721 876 7.062839 CCACACGAACATTTTCTTTTCTTTTCA 59.937 33.333 0.00 0.00 0.00 2.69
722 877 7.391016 CCACACGAACATTTTCTTTTCTTTTC 58.609 34.615 0.00 0.00 0.00 2.29
723 878 6.183360 GCCACACGAACATTTTCTTTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
724 879 5.290885 GCCACACGAACATTTTCTTTTCTTT 59.709 36.000 0.00 0.00 0.00 2.52
754 916 4.779733 TGTCTCCCCTCCTCGCCC 62.780 72.222 0.00 0.00 0.00 6.13
765 927 1.692411 AAACAAACTGGGCTGTCTCC 58.308 50.000 0.00 0.00 0.00 3.71
767 929 5.415701 CACATATAAACAAACTGGGCTGTCT 59.584 40.000 0.00 0.00 0.00 3.41
768 930 5.183140 ACACATATAAACAAACTGGGCTGTC 59.817 40.000 0.00 0.00 0.00 3.51
769 931 5.048083 CACACATATAAACAAACTGGGCTGT 60.048 40.000 0.00 0.00 0.00 4.40
840 1044 2.125065 CAGAGCAGAGCAGGCCAG 60.125 66.667 5.01 0.00 0.00 4.85
841 1045 4.405671 GCAGAGCAGAGCAGGCCA 62.406 66.667 5.01 0.00 0.00 5.36
843 1047 3.700831 ATGGCAGAGCAGAGCAGGC 62.701 63.158 0.00 0.00 0.00 4.85
888 1092 1.827681 TCTCTCTCCTGTTCACCTCG 58.172 55.000 0.00 0.00 0.00 4.63
943 1147 6.356556 TCTTCTTCCTCTCTCTCAGTATCTG 58.643 44.000 0.00 0.00 0.00 2.90
947 1151 6.381498 TCTTCTTCTTCCTCTCTCTCAGTA 57.619 41.667 0.00 0.00 0.00 2.74
949 1153 5.945784 TCTTCTTCTTCTTCCTCTCTCTCAG 59.054 44.000 0.00 0.00 0.00 3.35
950 1154 5.886609 TCTTCTTCTTCTTCCTCTCTCTCA 58.113 41.667 0.00 0.00 0.00 3.27
960 1164 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
961 1165 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
965 1169 7.508977 TCCTCTTCTTCTTCTTCTTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
966 1170 7.666623 TCCTCTTCTTCTTCTTCTTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
967 1171 7.610580 TCCTCTTCTTCTTCTTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
971 1175 6.081356 TCCTTCCTCTTCTTCTTCTTCTTCT 58.919 40.000 0.00 0.00 0.00 2.85
972 1176 6.353404 TCCTTCCTCTTCTTCTTCTTCTTC 57.647 41.667 0.00 0.00 0.00 2.87
973 1177 5.248248 CCTCCTTCCTCTTCTTCTTCTTCTT 59.752 44.000 0.00 0.00 0.00 2.52
974 1178 4.777366 CCTCCTTCCTCTTCTTCTTCTTCT 59.223 45.833 0.00 0.00 0.00 2.85
975 1179 4.775253 TCCTCCTTCCTCTTCTTCTTCTTC 59.225 45.833 0.00 0.00 0.00 2.87
976 1180 4.757692 TCCTCCTTCCTCTTCTTCTTCTT 58.242 43.478 0.00 0.00 0.00 2.52
977 1181 4.045334 TCTCCTCCTTCCTCTTCTTCTTCT 59.955 45.833 0.00 0.00 0.00 2.85
978 1182 4.349365 TCTCCTCCTTCCTCTTCTTCTTC 58.651 47.826 0.00 0.00 0.00 2.87
979 1183 4.412060 TCTCCTCCTTCCTCTTCTTCTT 57.588 45.455 0.00 0.00 0.00 2.52
1061 1265 0.107165 GGTAGGTTCATGGTGAGGCC 60.107 60.000 0.00 0.00 37.90 5.19
1062 1266 0.462047 CGGTAGGTTCATGGTGAGGC 60.462 60.000 0.00 0.00 0.00 4.70
1063 1267 0.462047 GCGGTAGGTTCATGGTGAGG 60.462 60.000 0.00 0.00 0.00 3.86
1078 1288 2.760385 GAGGCCTCTACCTGCGGT 60.760 66.667 26.25 5.58 41.32 5.68
1089 1299 1.484444 AAGAGTTCTTGCGGAGGCCT 61.484 55.000 3.86 3.86 38.85 5.19
1122 1360 1.297664 AATGCAGATGAAGAGAGCGC 58.702 50.000 0.00 0.00 0.00 5.92
1155 1425 2.270874 AATGGCTGCCCGGGAAGTAG 62.271 60.000 30.14 18.58 0.00 2.57
1178 1448 2.576615 GATCAAACAGGGGTATCAGCC 58.423 52.381 0.00 0.00 34.31 4.85
1180 1450 3.931907 TGGATCAAACAGGGGTATCAG 57.068 47.619 0.00 0.00 0.00 2.90
1186 1456 2.171003 GAAGGTTGGATCAAACAGGGG 58.829 52.381 14.94 0.00 32.84 4.79
1216 1486 2.223711 CCCAAGAACCAAGAACCAAACG 60.224 50.000 0.00 0.00 0.00 3.60
1238 1508 3.478274 GGAGGGGGAGCAGAGCAG 61.478 72.222 0.00 0.00 0.00 4.24
1258 1544 2.713895 GCTTCCAAAGAGCCAAGAAC 57.286 50.000 0.00 0.00 34.06 3.01
1265 1551 1.902938 AACAGAGGCTTCCAAAGAGC 58.097 50.000 0.00 0.00 39.41 4.09
1266 1552 2.555757 CCAAACAGAGGCTTCCAAAGAG 59.444 50.000 0.00 0.00 0.00 2.85
1269 1555 2.306847 GACCAAACAGAGGCTTCCAAA 58.693 47.619 0.00 0.00 0.00 3.28
1270 1556 1.214175 TGACCAAACAGAGGCTTCCAA 59.786 47.619 0.00 0.00 0.00 3.53
1271 1557 0.843309 TGACCAAACAGAGGCTTCCA 59.157 50.000 0.00 0.00 0.00 3.53
1272 1558 1.981256 TTGACCAAACAGAGGCTTCC 58.019 50.000 0.00 0.00 0.00 3.46
1274 1560 3.769300 AGTTTTTGACCAAACAGAGGCTT 59.231 39.130 0.00 0.00 38.86 4.35
1275 1561 3.365472 AGTTTTTGACCAAACAGAGGCT 58.635 40.909 0.00 0.00 38.86 4.58
1276 1562 3.801114 AGTTTTTGACCAAACAGAGGC 57.199 42.857 0.00 0.00 38.86 4.70
1279 1565 5.337169 CCCAGAAAGTTTTTGACCAAACAGA 60.337 40.000 7.68 0.00 38.86 3.41
1283 1569 4.161377 CCTCCCAGAAAGTTTTTGACCAAA 59.839 41.667 7.68 0.00 0.00 3.28
1288 1613 3.312736 AGCCTCCCAGAAAGTTTTTGA 57.687 42.857 7.68 0.00 0.00 2.69
1310 1651 4.003648 CTGCTTCTAACGGGACAAGAAAT 58.996 43.478 0.00 0.00 0.00 2.17
1311 1652 3.399330 CTGCTTCTAACGGGACAAGAAA 58.601 45.455 0.00 0.00 0.00 2.52
1319 1660 0.036388 TTGCTCCTGCTTCTAACGGG 60.036 55.000 0.00 0.00 40.48 5.28
1322 1663 2.096218 CGTTGTTGCTCCTGCTTCTAAC 60.096 50.000 0.00 0.00 40.48 2.34
1341 1685 0.536460 AACAGGGAAAACATCGCCGT 60.536 50.000 0.00 0.00 41.76 5.68
1342 1686 0.596082 AAACAGGGAAAACATCGCCG 59.404 50.000 0.00 0.00 41.76 6.46
1363 1708 3.945434 CGCACGATGCATCCCTGC 61.945 66.667 24.66 24.66 45.36 4.85
1376 1721 5.333645 GGATCACATCACAAGATAATCGCAC 60.334 44.000 0.00 0.00 31.88 5.34
1381 1726 5.687780 TGCTGGATCACATCACAAGATAAT 58.312 37.500 0.00 0.00 31.88 1.28
1419 1764 6.624352 TCACTGTTTGAGAATCTTTTCCTG 57.376 37.500 0.00 0.00 34.92 3.86
1436 1781 6.882610 TCATGCTCTAACAAATTTCACTGT 57.117 33.333 0.00 0.00 0.00 3.55
1448 1793 6.183360 GGGTAAAAAGACCATCATGCTCTAAC 60.183 42.308 0.00 0.00 41.73 2.34
1455 1800 6.165577 CCAAAAGGGTAAAAAGACCATCATG 58.834 40.000 0.00 0.00 41.73 3.07
1479 1824 3.495729 TGGCTCCCTCCCAGAAAC 58.504 61.111 0.00 0.00 0.00 2.78
1782 2128 3.758554 GCCAACTGGACAGACACAATATT 59.241 43.478 6.29 0.00 37.39 1.28
1790 2136 0.106708 TGTGAGCCAACTGGACAGAC 59.893 55.000 6.29 0.00 37.39 3.51
1831 2178 4.687483 GGCATTTTTGTGATGTGAAAGGAG 59.313 41.667 0.00 0.00 0.00 3.69
1840 2187 4.634199 ACTTTCAGGGCATTTTTGTGATG 58.366 39.130 0.00 0.00 0.00 3.07
1842 2189 4.161189 TGAACTTTCAGGGCATTTTTGTGA 59.839 37.500 0.00 0.00 32.50 3.58
1868 2215 5.636121 TCACAGCTGCATTCATGAAATTTTC 59.364 36.000 15.27 2.05 0.00 2.29
1875 2222 2.786777 AGTTCACAGCTGCATTCATGA 58.213 42.857 15.27 5.94 0.00 3.07
1876 2223 3.570926 AAGTTCACAGCTGCATTCATG 57.429 42.857 15.27 3.19 0.00 3.07
1877 2224 4.155462 CAGTAAGTTCACAGCTGCATTCAT 59.845 41.667 15.27 0.00 0.00 2.57
1878 2225 3.499537 CAGTAAGTTCACAGCTGCATTCA 59.500 43.478 15.27 0.00 0.00 2.57
1879 2226 4.075763 CAGTAAGTTCACAGCTGCATTC 57.924 45.455 15.27 2.41 0.00 2.67
1932 2299 4.202567 ACACAGTGGTAAAAGACATGGGAT 60.203 41.667 5.31 0.00 0.00 3.85
1933 2300 3.137544 ACACAGTGGTAAAAGACATGGGA 59.862 43.478 5.31 0.00 0.00 4.37
1934 2301 3.486383 ACACAGTGGTAAAAGACATGGG 58.514 45.455 5.31 0.00 0.00 4.00
1971 2338 2.848694 TCATCTCCTCCTCCTGCAATTT 59.151 45.455 0.00 0.00 0.00 1.82
1972 2339 2.438763 CTCATCTCCTCCTCCTGCAATT 59.561 50.000 0.00 0.00 0.00 2.32
1973 2340 2.048601 CTCATCTCCTCCTCCTGCAAT 58.951 52.381 0.00 0.00 0.00 3.56
1983 2350 1.118838 CTCCCACCACTCATCTCCTC 58.881 60.000 0.00 0.00 0.00 3.71
1984 2351 0.415429 ACTCCCACCACTCATCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
1985 2352 1.757699 GTACTCCCACCACTCATCTCC 59.242 57.143 0.00 0.00 0.00 3.71
1986 2353 2.741145 AGTACTCCCACCACTCATCTC 58.259 52.381 0.00 0.00 0.00 2.75
2055 2422 4.106925 GCTCCTCCTGCAGGTGGG 62.107 72.222 40.19 34.33 46.22 4.61
2088 2455 6.431198 TTTCTTTTGTTCTTACAGCGTTCT 57.569 33.333 0.00 0.00 35.28 3.01
2108 2475 2.833943 AGGGAAATGCAGGATGGTTTTC 59.166 45.455 0.00 0.00 35.86 2.29
2113 2480 1.478288 GGAGAGGGAAATGCAGGATGG 60.478 57.143 0.00 0.00 35.86 3.51
2114 2481 1.813092 CGGAGAGGGAAATGCAGGATG 60.813 57.143 0.00 0.00 40.87 3.51
2115 2482 0.471617 CGGAGAGGGAAATGCAGGAT 59.528 55.000 0.00 0.00 0.00 3.24
2116 2483 1.626356 CCGGAGAGGGAAATGCAGGA 61.626 60.000 0.00 0.00 35.97 3.86
2117 2484 1.153086 CCGGAGAGGGAAATGCAGG 60.153 63.158 0.00 0.00 35.97 4.85
2118 2485 0.745845 CACCGGAGAGGGAAATGCAG 60.746 60.000 9.46 0.00 46.96 4.41
2133 2501 1.026718 GGGAAGCCACTGAATCACCG 61.027 60.000 0.00 0.00 0.00 4.94
2157 2525 6.208599 TGAATCACCAAAGAGGAATTTGTACC 59.791 38.462 0.00 0.00 41.22 3.34
2161 2529 6.154445 CACTGAATCACCAAAGAGGAATTTG 58.846 40.000 0.00 0.00 41.22 2.32
2172 2549 2.957402 AGAAGCCACTGAATCACCAA 57.043 45.000 0.00 0.00 0.00 3.67
2181 2558 4.640364 AGAAGAAGAAGAAGAAGCCACTG 58.360 43.478 0.00 0.00 0.00 3.66
2250 2627 1.305213 TTGCTCCCTGAAATGCCCC 60.305 57.895 0.00 0.00 0.00 5.80
2268 2645 3.350219 ACCTTGAGTTGTTGTGAGTGT 57.650 42.857 0.00 0.00 0.00 3.55
2277 2654 8.403236 GTGAAGTTTTATTGTACCTTGAGTTGT 58.597 33.333 0.00 0.00 0.00 3.32
2292 2669 4.218417 GTGCCAGTGATGGTGAAGTTTTAT 59.782 41.667 0.00 0.00 0.00 1.40
2294 2671 2.362077 GTGCCAGTGATGGTGAAGTTTT 59.638 45.455 0.00 0.00 0.00 2.43
2315 2693 2.941064 CAATGCCTGTCCATGACACTAG 59.059 50.000 0.00 0.00 37.67 2.57
2318 2696 0.171903 GCAATGCCTGTCCATGACAC 59.828 55.000 0.00 0.00 37.67 3.67
2326 2704 3.340727 GCAAGATGCAATGCCTGTC 57.659 52.632 1.53 0.00 44.26 3.51
2398 2785 0.540923 CTCCTGCCCTGGAAGAAGAG 59.459 60.000 0.00 0.00 35.43 2.85
2427 2814 5.072736 TCATCTTCATATGCCTCCTTGTCAT 59.927 40.000 0.00 0.00 0.00 3.06
2449 2836 3.827817 TCCTCAAAGTAGGAGTCCTCA 57.172 47.619 17.09 0.00 40.86 3.86
2467 2854 3.350833 GCCCATGATGTATGAGGATTCC 58.649 50.000 0.00 0.00 39.21 3.01
2500 2887 0.249489 GGTCGGGAGAATGGTCATCG 60.249 60.000 0.00 0.00 42.89 3.84
2506 2893 1.826024 CAGAGGGTCGGGAGAATGG 59.174 63.158 0.00 0.00 42.89 3.16
2512 2899 2.043852 GAGAGCAGAGGGTCGGGA 60.044 66.667 0.00 0.00 46.06 5.14
2515 2902 2.363018 TGGGAGAGCAGAGGGTCG 60.363 66.667 0.00 0.00 46.06 4.79
2580 2967 2.243774 ATCCTCCTCCTCGGCCTTGA 62.244 60.000 0.00 0.00 0.00 3.02
2634 3021 5.238583 ACCTTCAACAGTATCTGCACTAAC 58.761 41.667 0.00 0.00 34.37 2.34
2681 3068 0.883833 GTCAGCCACCATTGTTCAGG 59.116 55.000 0.00 0.00 0.00 3.86
2703 3090 0.037877 AGCAGAGCATTTGGAGCTGT 59.962 50.000 0.00 0.00 43.58 4.40
2704 3091 1.174783 AAGCAGAGCATTTGGAGCTG 58.825 50.000 0.00 0.00 43.58 4.24
2705 3092 1.817447 GAAAGCAGAGCATTTGGAGCT 59.183 47.619 0.00 0.00 46.82 4.09
2706 3093 1.817447 AGAAAGCAGAGCATTTGGAGC 59.183 47.619 0.00 0.00 0.00 4.70
2763 3150 3.398353 GAGGTCCTCCTTCGACGCG 62.398 68.421 7.78 3.53 45.24 6.01
2773 3160 3.213402 CCGCTCCTCGAGGTCCTC 61.213 72.222 30.17 16.09 41.67 3.71
2833 3220 1.936547 GAATCATCAGTCCCAAGCGAC 59.063 52.381 0.00 0.00 0.00 5.19
2835 3222 2.208431 GAGAATCATCAGTCCCAAGCG 58.792 52.381 0.00 0.00 33.17 4.68
2849 3236 0.329596 ACCAACCCTGCTGGAGAATC 59.670 55.000 11.88 0.00 37.40 2.52
2852 3239 0.110486 GAAACCAACCCTGCTGGAGA 59.890 55.000 11.88 0.00 37.40 3.71
2853 3240 0.178992 TGAAACCAACCCTGCTGGAG 60.179 55.000 11.88 3.93 37.40 3.86
2854 3241 0.178992 CTGAAACCAACCCTGCTGGA 60.179 55.000 11.88 0.00 37.40 3.86
2855 3242 1.809567 GCTGAAACCAACCCTGCTGG 61.810 60.000 1.89 1.89 40.05 4.85
2856 3243 1.108727 TGCTGAAACCAACCCTGCTG 61.109 55.000 0.00 0.00 0.00 4.41
2857 3244 1.109323 GTGCTGAAACCAACCCTGCT 61.109 55.000 0.00 0.00 0.00 4.24
2858 3245 1.109323 AGTGCTGAAACCAACCCTGC 61.109 55.000 0.00 0.00 0.00 4.85
2864 3251 2.878406 GCTAGTCAAGTGCTGAAACCAA 59.122 45.455 0.00 0.00 35.22 3.67
2870 3257 2.103373 CCCTAGCTAGTCAAGTGCTGA 58.897 52.381 19.31 0.00 37.62 4.26
2871 3258 1.472376 GCCCTAGCTAGTCAAGTGCTG 60.472 57.143 19.31 0.78 37.62 4.41
2890 3277 3.204526 CATCCAAGAGATCCTGAACAGC 58.795 50.000 0.00 0.00 30.59 4.40
2891 3278 4.190001 CACATCCAAGAGATCCTGAACAG 58.810 47.826 0.00 0.00 30.59 3.16
2894 3281 3.620719 GCACACATCCAAGAGATCCTGAA 60.621 47.826 0.00 0.00 30.59 3.02
2910 3297 1.813178 TCTCAACAAAAACGGCACACA 59.187 42.857 0.00 0.00 0.00 3.72
2918 3305 4.937201 AGGGGTCAATCTCAACAAAAAC 57.063 40.909 0.00 0.00 0.00 2.43
2938 3325 0.523072 GCAGGTGTACATGTGCCAAG 59.477 55.000 17.46 6.37 0.00 3.61
2968 3355 9.342308 GATCAAGATTGGTCAATTCAGGTAATA 57.658 33.333 0.91 0.00 38.20 0.98
2969 3356 7.286316 GGATCAAGATTGGTCAATTCAGGTAAT 59.714 37.037 8.04 0.00 40.07 1.89
2970 3357 6.603201 GGATCAAGATTGGTCAATTCAGGTAA 59.397 38.462 8.04 0.00 40.07 2.85
2971 3358 6.122277 GGATCAAGATTGGTCAATTCAGGTA 58.878 40.000 8.04 0.00 40.07 3.08
2996 3383 6.819397 AGGTAACCAAAGCTTAGCTTAAAG 57.181 37.500 20.43 13.54 43.61 1.85
3081 3482 4.582701 TGTGTACTTCCAATGCAAAAGG 57.417 40.909 0.00 0.00 0.00 3.11
3092 3493 6.494893 TGTTCTTGCATTATGTGTACTTCC 57.505 37.500 0.00 0.00 0.00 3.46
3176 3622 0.033228 TCCTGTGCCGCAAATTTTGG 59.967 50.000 10.96 2.42 0.00 3.28
3191 3637 1.202348 CCACTCGTGATGTAGCTCCTG 60.202 57.143 0.00 0.00 0.00 3.86
3193 3639 1.103803 TCCACTCGTGATGTAGCTCC 58.896 55.000 0.00 0.00 0.00 4.70
3216 3663 6.426633 AGCCCTATGTTTTGCAAAATTGTAAC 59.573 34.615 26.24 14.23 32.53 2.50
3218 3665 5.931146 CAGCCCTATGTTTTGCAAAATTGTA 59.069 36.000 26.24 17.25 0.00 2.41
3242 3689 9.585099 TCATTTGCAAAACTATAATGAATGGAC 57.415 29.630 17.19 0.00 33.61 4.02
3301 3749 8.587608 TGCTAGAATCAGGAATTCATTTGTTTT 58.412 29.630 7.93 2.23 45.34 2.43
3302 3750 8.125978 TGCTAGAATCAGGAATTCATTTGTTT 57.874 30.769 7.93 4.22 45.34 2.83
3318 3766 5.186198 ACAGTGGTATGGTTTGCTAGAATC 58.814 41.667 0.00 0.00 0.00 2.52
3319 3767 5.179452 ACAGTGGTATGGTTTGCTAGAAT 57.821 39.130 0.00 0.00 0.00 2.40
3320 3768 4.634012 ACAGTGGTATGGTTTGCTAGAA 57.366 40.909 0.00 0.00 0.00 2.10
3322 3770 5.670485 TGATACAGTGGTATGGTTTGCTAG 58.330 41.667 0.00 0.00 40.28 3.42
3323 3771 5.670485 CTGATACAGTGGTATGGTTTGCTA 58.330 41.667 0.00 0.00 40.28 3.49
3324 3772 4.517285 CTGATACAGTGGTATGGTTTGCT 58.483 43.478 0.00 0.00 40.28 3.91
3325 3773 3.065371 GCTGATACAGTGGTATGGTTTGC 59.935 47.826 0.00 0.00 40.28 3.68
3326 3774 3.309682 CGCTGATACAGTGGTATGGTTTG 59.690 47.826 0.00 0.00 40.28 2.93
3327 3775 3.531538 CGCTGATACAGTGGTATGGTTT 58.468 45.455 0.00 0.00 40.28 3.27
3328 3776 3.179443 CGCTGATACAGTGGTATGGTT 57.821 47.619 0.00 0.00 40.28 3.67
3350 3833 2.186826 AGCAAGGTCGTGGTGCAAC 61.187 57.895 0.00 0.00 40.83 4.17
3364 3847 0.979665 AGAGCAGCTACTTCCAGCAA 59.020 50.000 0.00 0.00 44.35 3.91
3367 3850 1.098869 TCGAGAGCAGCTACTTCCAG 58.901 55.000 0.00 0.00 0.00 3.86
3368 3851 1.678627 GATCGAGAGCAGCTACTTCCA 59.321 52.381 0.00 0.00 0.00 3.53
3373 3885 0.248661 TTGCGATCGAGAGCAGCTAC 60.249 55.000 21.57 0.00 44.72 3.58
3456 3968 2.293399 GGTCAATGACGCTTGGAACTTT 59.707 45.455 7.35 0.00 32.65 2.66
3764 4367 4.774124 TCTCCACCTCTTTTATGCTGATG 58.226 43.478 0.00 0.00 0.00 3.07
3797 4400 8.635328 TGTTGTTCTACTTGTCATGAGTTACTA 58.365 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.