>input_sequence_42376
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---ATGGAGGTGCAGGCTCGCCATGGCTCCCTGCCAACAGGGAGGCAGCAGCGCCTCCATGGCCGGC------CTCACCA
TGAACCTACCGCAGGTAGAGGCCTCCGCAAGAA----------------------------CTCTTGGCCGACAGTTCTG
CGCTCTCTTCA--------------------------------TCTGCATTTCCAATAGAAATTCTACTTCCCGGGCAGC
CATTGCCGGCTGATACCCCTGTTTGATCCAACCTTCGGAAGGCTCCGTTTGGTTCTTGGTTCTTGGGCTGCTCTGCTC--
--------------CCCCTCCCTGTTCTTGGCTCTTTGGAAGCCTCTGTTT-----------------------------
----------GGTCAAAAACTTTCTGGGAGG----------------CTAATTTCTTGTCCCGTTAG---AAGCAGGAGC
AACAACGGCGATGTT-TTCCCTGTTTTGCAGGGATGCATCGTGCGATTATCTTGTGATGTGATCCAGCAGATCGGCTCTG
CACCAGGAAAAGATTCTCAAACAGTGAAATTTGTTAGAGCATGATGGTCTTTTTACCCTTTTGGTTTCTGGGAGGGAGCC
AGTAATAGCAA-GGTCTGCAGTGTGAATCACATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTGAATATTGTGTCTG-TCCAGTTGGCTCACAGCTT
TTGTGACTCCCATTTCTCTCCTTTCACATCACAAAAATGCCCTGAAAGTTCAGAGAAAATTTCATG--------------
-----AATGCAGCTGTGAACTTACTGCTGATTTTCC-CTCTTCTCAGAGGCACTGATTATCCCATGTCTTTTACCACTGT
GTAACAAAACGAACAAAAAATTGCAGGAGGAGGAGATGAGTGGTGGGAGTACTTCCCCTGCCCCTTCTGCTACGTCGAGG
TGGAGGTCCCCTTCCTCTGCGCCCACCTGCAGGAGGAGCACTGCTTCGACATGAAGAACGCTGTAAGAACAAAAGAAAAC
CATCC-TGCATTTCCCTCTCCGGTGATTCAGTGGCTTCCCTTGAGGTACAAATT---------CCTCTTTGGTGATTCAG
TGGCTTCTTCTTCTTCTTCTTTCAGGTGTGCCCGATCTGCGCCGAGAACCTCGGGGCCGACACGGCGGGGCATTTCAGGG
AGCAACACTCACAACAACTCAAGGTACAATAAAACTTC-ACCATCACTGGCACTAGTGTCATGG--ACAGGCATTGCAT-
---CTTGCAAACCACATTGCAGCTCACTGGCAATGCCATTTTGATC---ACAGATGAGGAAGTCCTCTTCTTCCAGGGCA
GGAGCAGCAGCTGATGACAAGGAGGCATATGAAGATGAGGACTCCTACTTTGAGGAATCCTCATACATCATGGGCCGGCC
GGTTCCCGATGACCATTCTCCCGACCCTCTGCTCTCCCAGTTCATCTGCGCCTTCGCGCCGCCCCCGGTCGTCGATCCGG
AGCCCATCAAGGCCGAGGAGGAGGATCATGCTGCACCTTCCTCAGATGATCAGAGGTATGGTTAGTGCAGATACTGTTGA
AGGTTGGGAGTGGAAGATGGTCCTGAACCTGAACAATGGTGGCTGACTGACAGCTCCAAATGCTCTGCTTTCTTCATCCT
TGCAGGCTGAATCAGGTTGTGATGGACGACGCGTCGAAGGAGGACCTCGAGGAGCGGCTGCGGAGGGTCGAGTTTGTGAA
GCAGATGCTGATGACGACGGTCGCTTGGGACTGA----------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>chr1B_1_TraesCS1B01G031000
CCAACTTGGCTTGGCTCCCAAGTTCCCTCAGAAAGGTGATTAACTACTGTTACTTATTAGAA-------AGAAAGAGAAG
CAAAATAA----GGCCATGAAGACAATTAATTATTAGTTAGATCAGGACAGAGACAAACAAGCCTGATCATGAAGACCAC
TGTGGCTAGCTCTCATGGTGCAAGTTGCACCATTTGTTTAACCACATGCCACATGCCCCCCAATGCTCTA--TATAATCT
TTCTGTGCCAGGGTTCCGTACAGGGCAACGTGCCTTGGTGTCGTGACAACAAAGGTCAGAAATATGCCTTTGAGAGTGCC
TGCCTGCTTAATCCAAATTGTTGTCACATTAGGACAACTATGGAGCTA--------------------------------
-------------------TTTTTTTCATATAAAT---------------------------------------------
------------------------------AATACTAGTAGCATATATTCTCGCTCCGTCCGGAAACACCTGCTGCTGGA
GAAATAAGTGAAAATGGATGTATCTAGAACTAAAATACGTCTGGATACATCTATTTCTTCAACATGTATTTTCAGGCGGA
GAGAGCAGTATACAATATATT--AAGAAAACTTGAACGATTAGGAGTTGCAGGCCTGGATA----------ATCAAGAAA
ACAAGTGGTTTATGTTGACAGTTCAATAATTAA-CTTTGCTGAAGGAAACTAAACATTCTCCCCTCACCTAACCAAAT-C
CATCACGGGAGGTCATTTTCGCCATCCTCTTTTC-CTCTCTCTCGCTTTGCTTTTGAACATGTCACCGCACGGAATGAAA
AGAAAAGA-------AAATGTTCGTGTGGCCACAAGGGCGAGGAGGGGAGA----------------CAGCCCAGTTTGT
TTATAT----GTG------TGAATGCCACATGAGGA------GCTGACCCACCCAC----------CCCACCCCACCCCC
TCCCTGGCCTGCTCTGCTCTGCCATTACTTGGCGTGTGCTGCCGCCGCTGCCGAGGTGAACAGGAGAGAGAAGAAGAAGA
ATAGAAGAGCAAGCAGTGAGAACTCTCAGATACTGAGAGAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGGAG
GAGATGGAGGTGCAGGCTCGCCATGGCTCCCTGCCAACAGGGAGGCAGCAGCGCCTCCATGGCCGGC------CTCACCA
TGAACCTACCGCAGGTAGAGGCCTCCGCAAGAA----------------------------CTCTTGGCCGACAGTTCTG
CGCTCTCTTCA--------------------------------TCTGCATTTCCAATAGAAATTCTACTTCCCGGGCAGC
CATTGCCGGCTGATACCCCTGTTTGATCCAACCTTCGGAAGGCTCCGTTTGGTTCTTGGTTCTTGGGCTGCTCTGCTC--
--------------CCCCTCCCTGTTCTTGGCTCTTTGGAAGCCTCTGTTT-----------------------------
----------GGTCAAAAACTTTCTGGGAGG----------------CTAATTTCTTGTCCCGTTAG---AAGCAGGAGC
AACAACGGCGATGTT-TTCCCTGTTTTGCAGGGATGCATCGTGCGATTATCTTGTGATGTGATCCAGCAGATCGGCTCTG
CACCAGGAAAAGATTCTCAAACAGTGAAATTTGTTAGAGCATGATGGTCTTTTTACCCTTTTGGTTTCTGGGAGGGAGCC
AGTAATAGCAA-GGTCTGCAGTGTGAATCACATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTGAATATTGTGTCTG-TCCAGTTGGCTCACAGCTT
TTGTGACTCCCATTTCTCTCCTTTCACATCACAAAAATGCCCTGAAAGTTCAGAGAAAATTTCATG--------------
-----AATGCAGCTGTGAACTTACTGCTGATTTTCC-CTCTTCTCAGAGGCACTGATTATCCCATGTCTTTTACCACTGT
GTAACAAAACGAACAAAAAATTGCAGGAGGAGGAGATGAGTGGTGGGAGTACTTCCCCTGCCCCTTCTGCTACGTCGAGG
TGGAGGTCCCCTTCCTCTGCGCCCACCTGCAGGAGGAGCACTGCTTCGACATGAAGAACGCTGTAAGAACAAAAGAAAAC
CATCC-TGCATTTCCCTCTCCGGTGATTCAGTGGCTTCCCTTGAGGTACAAATT---------CCTCTTTGGTGATTCAG
TGGCTTCTTCTTCTTCTTCTTTCAGGTGTGCCCGATCTGCGCCGAGAACCTCGGGGCCGACACGGCGGGGCATTTCAGGG
AGCAACACTCACAACAACTCAAGGTACAATAAAACTTC-ACCATCACTGGCACTAGTGTCATGG--ACAGGCATTGCAT-
---CTTGCAAACCACATTGCAGCTCACTGGCAATGCCATTTTGATC---ACAGATGAGGAAGTCCTCTTCTTCCAGGGCA
GGAGCAGCAGCTGATGACAAGGAGGCATATGAAGATGAGGACTCCTACTTTGAGGAATCCTCATACATCATGGGCCGGCC
GGTTCCCGATGACCATTCTCCCGACCCTCTGCTCTCCCAGTTCATCTGCGCCTTCGCGCCGCCCCCGGTCGTCGATCCGG
AGCCCATCAAGGCCGAGGAGGAGGATCATGCTGCACCTTCCTCAGATGATCAGAGGTATGGTTAGTGCAGATACTGTTGA
AGGTTGGGAGTGGAAGATGGTCCTGAACCTGAACAATGGTGGCTGACTGACAGCTCCAAATGCTCTGCTTTCTTCATCCT
TGCAGGCTGAATCAGGTTGTGATGGACGACGCGTCGAAGGAGGACCTCGAGGAGCGGCTGCGGAGGGTCGAGTTTGTGAA
GCAGATGCTGATGACGACGGTCGCTTGGGACTGATGATTCTCCAGCAGGGTTGGTTTCAGCACTTGACTAGCTAGGGCTG
TTCAGGATCTCTTGGATGTGTGCCGTTTTTGTTGAGATTGACCCCTTGGCACATGTACACCTGCAACCTTGGATTATTAC
CTGAATTGACCAATCTTGATCCCTTTAAGCTAAGCTTTGGTTACCTTCATGTCTCTTCCCAGGAGAAACCAGTTGGACTC
TTC----------TTCACA----TGATTGACAGACACTCACCCTTTTGCATTGGAAGTACACATAATGCAAGAACATAAA
CTTTCTCAACAAAGAAGAAACG------------------------------------------ACACCATATTTGATCA
AAAATAATGT---ATTGGACACCAAAATTTGCGGCACAGGAGCTACATCA-CGAGTGGATCCGTTACAATTTTGCAAAAC
ATAGGGCTGTCCATTCATTATAGTTTTGCAAATG-ACAGAACTGCGACAGTCATACATCGTTCAGGGTAAAACAAATGAA
TTCCTGATTCTAGCAA-----------------------------------ACCATACCACTGTATCAGCGGGTTGCACC
ACGACCTTGCTG-----------------------------GAAGTAGCTGCTCTCGATCGCAATCTTCCAAAGGGCATG
GCCAATTCTCATAGGTATCCCTTGGTGATTTGTTCTTGCAGTTCGTCAAAGTTCCAAGCGTCATTGACCGAATAGTCACC
TGTGA-------AGCAGACATAAAAATCAATGGCATAAAAGTACTTGCATTTTCCAAGCCAAAGAGACTTATGTGCC-TG
AAAACACATATGTATATAATGCTCATATATATAGAGTAGTAAAAAAACAGGATGTATATAATGCTCATATA---------
--------------------------------------------------------------------------TATAGA
GTAGTAAAAAAACACAGGATGTATATAATGCTCATATAAAACATACCAATTGAGTCCCTCCGAAGGGCAGTTAAATGAGC
ACAGCTGCAGGAAAATGCGTACACATTAGATTTAGTCATCACAATGCATCAGCATAAAAGAGGTGGAGATATCCAAGGGT
AGTA---ACTCATGACAAGTAGAACAACAGGATTCTTCTCAGACCACATATGA
>chr1A_1
CCAACTTGGCTTGGCTCCCAAGTTCCCTCACAAAGGTGATTAACTATATGGCTAAACACATTGTTTTTTAGAAAGAGAAG
CAAAA-------GGCCATCAAGACAATTAATTAACAGTTAGATCAGGAGAGAGACAAACAAACCTGGTGATGAAGAGCAC
TGCGGCTAGCTCTCCTGCTCCCAGTTGCACCATTTGTTTAACCGCATGCCACGTGTTC----------------------
----------------CGTACAAGGCAACGTGCCTTG-----GTGACAACAAAGGTCAGAAAATA-----------TGCC
TGCCTGCTTAATCCAAATTGTTGTCACATTAGGATAAGAGCAAGATGGATGAGACCAATAAATTCTAGTACCATTTTTTT
GCACTGCACATGGAGATATTTTCTTGCATATAAAT---------------------------------------------
------------------------------AATAATATACAG--------------------------------------
--------------------------------------------------------------------------------
------------CAGTATATG--TAAAAAACTTGAACAATTAGGACAGTTGC--------A----------ATCAGGAGA
TCAAATGGTTCGTGTTGACAGTCAAGATAATTAGCTTTCCTGGAGAGAACTAAGCATTCTGCCCTCACCTAACCGATTCC
TATTAAGGT--GTCATTTTCGCCATCCTTTTTCT--TCTCTTTGGCTTTGCTTTTGAACATGTCATCGCACGGG-----A
AGAAAAAGAAAAGAGAAATATTCGTGTGGCCACAAAGGCGAGGAGGCGGCCACCATGGACGGACGGGCAGCCCGGTTTGT
TTATAT----GTGATGTGATGAATGCCACATGAGGCTGCTCTGCTGACCCACCCAC----------CCCCTC--------
-------CCTGCTCTGCTCTGCCATTACTTGGCGTGTGCTGCTGCCGCTGCTGAGGTGAACAGGAGAGAGAAGAAGAAGA
ATAGAAGAGCAAGCAGTGAGAAGTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAG--------AGAAGAAGAGCAAGGAG
GAGATGGAGGTGCAGGCTCGCCATGGCGTCCTGCCAACAGGGAGGCAGCAGCACCTCCATGGCCATGGCCAATCTCACCA
TCAAGCTCCCGCGGGTAGGGGTCTCTGCAAGAACTCTTGGCCATTCCGTTCTTCCCCCCTCCTCTTGGCCGACAGTTCTT
CGCTCTCTCTTCTTTTTCTGCTTCTCCCGTCCAGTGATCTTCCTCCGCATTTCTAATAGAAATTTTACTTCTTGGGAAGC
CATTGCCAGTTGATAGCCCTGTTTGATCGAATCTTTGGAAGGCTCTGCTTGGTTCTTGGTTCTTGTGGTGCTCTGCTCTC
TCAAATTCATGCCCCCCCTCC-TCCTCCCCCTTTCCCCGTCTCCCCTGGTTTTACTGGCTTCCGAGGAGTGGCTTGCGCT
TTGATCTCTGGGCCAAAAACTTTCTGGGAGGTTTGTTTGTGCCTCATCTATCTTCTTGTTCCATTATTACAAGCAGGAGC
AACAGAGGCAAAAAAATTTCTTGTTTT-CAGGGATGCATCATGCAGGTACAGTGAA------------AGATCGGCTCTG
CACAAGGAAAAGATTCTCAA-TAGTGAAATTTATTAGA-TATGATGGTCTTTTAACCTTTTGATTCCT-----GGGAACC
AGTAGTAGCAA-GGCCTGCAGTGTGAATCACC------------AGAGAGAGGGAGAGAGGGATTTGTGTGGGAAA-TTT
GGGCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TATCTGCATATTGTCTGTGATCCAGTTGGCTCACAGCTT
TTGTGACTCCCC-TTCTTTCCTTTCAAACCACAAAAATGCCCTGAAAGTTCTGATAAAATTCATAAATGCAGTTGAAAAA
C--AAAATGCAGCTGTGAACTCACTG---ATTTTCTTCTCTTCTCAGAGGCACTGATT---CCATGTCTTTTACCACTGT
ATAACAAAACAAACAAAT--TTGCAGGAGAG---GATGAGTGGTGGGAGTACTTCCCATGCCCCTTCTGCTACATTGAGG
TGGAGGTCCCCTTCCTCTGTGACCACCTGCAGGAGGAGCACTGCTTCGACATGAGGAATGCTGTAAGAACAAAC------
-CATTGTGCATTTCCCAATCTGGTGATTGAGTGGCTTCTCTTGATGTAACAAATCTGCATTTCCCTCTCTGGTGATTGAG
TGGCTTCTTCTTCTTCTTC---CAGGTGTGCCCGATCTGCGCCGACAACCTCGGGGCCGACACGACAGGGCATTTCAGGG
AACGGCACTCACAGCAACTCAAGGTACAGTGAAACTTCCATCTTCACTGCCAGTAATGTCACAACAACAGGCATTGCAT-
---TTTGCAAACCACATTGCAGCTCACTGTCAATGCCATTTTGATC---ACAGATGAGGAAGTCGTCTTCTTCCAGAGCA
GGGGCAGCAGGTTCTGACAAGGAGGCATATGAAGAGGACGACTCCTACTTTGAAGAATCATCGTACATCATGGGCCAGCC
GGTTCCTGATGATCATTCACCTGACCCTCTGCTCTCCCAGTTCATCTGCACGGTCG---CGCCTCCGGTCGTCGATCCGG
AGCCCAGCAAGGCCGAGGAGGAGGATCATGCTGCACCGTCCTCGGATGATCAGAGGTATGATTAGTGCAGATACTGTTGA
AGGTTGGGAGTGAAAGATGGCCCTGAATATGAACAATGGTGGCTGACTG----CCCCAAATGATCTGCTTCCTTCTTGCT
TGCAGGCTGAATCAGGTTGTCATGGACGATGCGTCGAAGAAGGACCTCGAGGAGCGGTTGCGGAGGGTCGAGTTTGTGAA
GCAGATGCTGATGACAACGATAGCTTGGGACTGATTATC------CAGGGCTGGTTATAGCACTTGACTAGCTAGGATTG
CTCAGGATCTTGGAA----GTGCCATTTTTGTTGAGATTGACCCTTTGGTACATGTATACCTGCAACCTTGGAT----AC
CTGAATTGACCAATCTTGATCCTTTTAAGCTAAGCTTTGGTTATCATCATGTCTCTTTCCAGGAGAAACCAGTTGGACTC
TTC----------TTTACATAATTGATTGACAGACACCCACTCTTTTGCATT-AAAGTACACATGATGCAAGAACATAAA
CTTTCTCAGCAAAGAAGAAACATCCAGCAAGTACATTGTACAAGCAAAAATGGCAGGTAGAATCGCACCATATTTGATCA
AAAATAATGT---ATTGGACATCAAAATTTGCGGCAGAAGAGCTACAGG---GAGTGGATCC----------TGCAAAAC
ATAGGGCTATCCATTCACTATAGTTTTGCAAATG-ACAGAACTGCGACAGTCATACATTGTTCAGGCTT-AACAAATGAA
TTCCTTGACTCCAAGGAGACCTAAGAAGTCAGAT--TGCAGATTCATGTAGACCATACTGCTGTATCAGCGGCTTGCACC
ACGACCATGAGTGCTCAGTGCCTCAGTCCACCACATGTCTAGAAATAGCTGCTCTCGATCGCAATCTTCCAAAGGGCATG
GCCAATTCTCATAGGTATCCCTTGGTGATTTGTTCTTGCAGTTCGTCGAAGTTCCAAGCATCATTGACCGAATAGTCACC
TGTGA-------AGCAGACATAAAAATCAATGGCATAAAAGTACTTGCATTTTCCAAGCCAAAGAGACTTATGTGCCTTG
AAAACACATATGTATATAACGCTCGTATATACTTCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGT
ATCTAACACTAAAACGAAACTAGATACATCTGTATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATATA
CTAGTAAAAAAACACAGGATGTATATAATGCTCATATAAAACATACCAATTGAGTCCCTCCGAAGGGCAGTTAAATGAGC
ACAGCTGCAGAAAAATGCAT--ACATTAGACTTAGTCATCACAACGTATCAGCATACAAAAGGTGGAGGTATCCAAGGAC
AGTAGTAACTCATGACAACTACAACAACAGGATTCTTCTCAGACCACACATGA
>chr1D_1
CCAATTTGGCTTGGCTCCCAAGTTCCCTCAGAAAGGTGATTAACTACTGTTACTTATTGGAA-------AGA----GAAG
CAACATAAGGCCGGCCATGAAGACAATTAATTAAGAGTTAGATCAGGACACCCACAAACAAACCTGGCCATT--------
-----------------GTGCAAGTTGCATCATTTGTTTAACCACATGCCACATGCTCTCTATAATGTTCTCTATAATCT
TTCTGTGCCAGGGTTCCGTACAGGGCAACGTGCCTTG-----CTGACAACAAAGGTCAGAAATATGCCTT-GAGAGTGCC
CGCCTGCTTAATCCAAA-----GTCACATTAGGATAAGAGCAAGATGGACGAGACCAATACCGCTTTGTTTTATAGTACT
ACTCCCTCCGTTCCATAATATAGTGCCTATAAACTTTTTGAGAAATCAAACTTTGCAAACTTTGACCAAGTTTGTAGGGA
AAAATATTTATATCTACAATAATAAAAATAAATAATATACAG--------------------------------------
--------------------------------------------------------------------------------
------------CAGTATAATAATAAAAAACTTCAACAATTAGGATAGTTGC--------AGAACTGAGCAATCAAGAAA
ACAAAGGGTTCATGTTGACACATAGTT-------------------------AACATTCTCCCCTCACCTAACCAAATTC
CATCACGGGC-GTCATTTTCACCATCCTTTTTCTTCTCTCTCTCGCGTTGCTTTTGAACATGTCATCGCACGGG-----A
AGAAAAGA-------AGATATTCCTGTGGCCACAAAGGCGAGGAGGCGCCCACCATGGACGGACGGGCATCCTAGTTTAT
TTATAAATGCGTG------TGTATACCACATGAGGA------GCTGAGAGGGAGCAACGAGGCTGACCCACCCCACCCCC
TCC----------CTGCTCTGCCATTACTTGGCGTGTGCTGCTGCCGCTGCTGAGGTGAACAGGAGAG---AGAAGAAGA
ATAGAAGAGCAAGCAGCGAGAACTCTGAGGCAGAGAGAGAGAGAGAGAGAG------------------AGAGGAAGAAG
GAGATGGAGGTGCAGGCTCGCCATGGCTGCCTACCAACAGGGAGGCAGCAGCACCTCCATGGCCATGGCCAGGCTCACCA
ACAACCTCCCGCAGGTAGGGGTCTCTGCAAGAACTCTTGGCCATTC---TCTTCTTTCCCCCTCTTGCCCGACAGTTCTC
TGCTCTCTT---TTCTTCTGCTTCTCCTGTCCAGTGATCCTCCTCTGCATTCTCAATAGAAATTTTATTTCTTGGGCAGC
CATTGCT-----------CTGTTTGATCCAATCTTTGGAAGGCTCTGTTTGGTTCTTG-------GGGTGCTCTGCTCTC
TCAAATTTATGCCCCCCCTCCCTCCTCCCCTTTCCCCCGTCTCCCCTGGTTTTACTGGCTTCTGAGGAGGGGCCTGCGTT
TTGATCTCTGCCCGGCAGGGTTAGATGGGACCTAAC--GTGTCCCATCTATCTTCTTGCTCCATTAG---AAGCAGGAGC
AACCGAGGCAATATT-TTTCCTGTTTT-CAGGGATACATCATGCG-TTATCTTGTGATGTGATCCAGCAGATCGGCTCTG
CACAAGGAAAAGATTCTCAA-CAGTGAAATTTATTAGAGTATGATGGTCTTTTTAACCTTTTGATTTCTGGGAGGGAACC
AGTAATAGCAAGGGTCTGCAGTGTGAATCACATGAGGGAGAAAGAGAGAGAGGGAGAGAGGGATTTGTGTGGGAAAATTT
GGGCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TATCTGCATATTGTCTCTG-TCCAGTTGGCTCACAGCTT
TTGTGACTCCCATC-CTTTCCTTTCAAACCATAAAAATGCCCTCAAAGTGCAGATAAATTTCACAAATGCAGTTAAAAAA
AATAAGATGCAGCTGTGAACTTACTG---ATTTTCT-CTCTTCTCAGAGGCACTGGCT---CCACATCTTTTACCACTGT
ATAATAAAACAAACAAAT--TTGCAGGAGA---AGATGAGTGGTGGGAGTACTTCCCCTGCCCCTTCTGCTACATTGAGG
TGGAGGTCCCCTTCCTCTGTGACCACCTGCAGGAGGAGCACTGCTTTGACATGAGGAACGCTGTAAGAAAAAGAAAAAAA
TCATTGTGCATTCCCCTCTCTGGTGATTCAGTGGCTTCTCTTGATGTAAAAATT---------CCTCTCTGGTGATTGAG
TGGCTTCTTCTTCTTCTTC---CAGGTGTGCCCGATCTGCGCCGACAACCTCGGGGCCGACACGGCCGGGCATTTCAGGG
AGCAGCACTCACAGCAACTCAAGGTACAGTGAAACTTC-ATCTTTACTTGCAGTAATGTCATGA--ACAGACACTGCAAT
CAATTTGCAAACCACATTGCAGCTCACTGGCAATGCCATTTTGATCACAACAGATGAGGAAGTCTTCTTCTTCCAGGGCA
GGAGCAGCAGCTGCTGACAAGGAGGCATATGAAGAGGATGACTCCTACTTCGAAGAATCCTCATACATCATGGGCCGGCC
GGTAGCTGATGATCATTCCCCTGACCCTCTGCTCTCCCAGTTCATCTGCACCGTCG---CGCCCCCGGTCATCGATCCAG
AGCCCAGCAAGGCCGAGGAGGTTGATCATGCTGCACCTTCCTCAGATGATCAGAGGTATGATCAGTGCATATAGAGCTTG
AAA---------------GGTCCTGAATCTGAACAATGGTGGCTGACTG----CTCCAAATGCTCTGCTTCCTTCTTGCT
TGCAGGCTGAATCAGGTTGTGATGGATGATGCGTCGAAGCAGGACCTCGAGGAGCGGCTGCGGAGAGTCGAGTTTGTGAA
GCAGATGCTGATGACGACGATGGCTTGGGACTGATTCTC------CAGGGCTGGTTATAGCACTTGAGTAGCTAGGATTG
CCCAGGA--TCTTGGAAGTGTGCCATTTTTGTTGAGATTGACCCTTTGGCACATGTACACCTGCAAGCTTGGAT----AC
CTGAATTGACCAATGTTGATCC-TTTAAGCTAAGCTCTGGTTACCTTCATGTCTCTTCCCAGGAGAAACCAGTTTGGTGA
CTTTTTTTTTTCTTTTACATAATTGACACT-------TCACTCTTTCGCATTAAAAGTACACATAATGCAAGAACATAAA
CTTTCTCAACAAAGAAGAAACATCCAGCAAGTACACTGTACAAGCAAAAG-GGCAGGTAGGATTACACTATATTTTATAA
AAAATAATAATGCATTCAACATCAAAATTTGCGGCAGAAGAGCTACATCAACGAATGCATCCATGACAATTTTGCAAGAC
ATAAAACTAAGCATTCATTGCAGGTTTGCAATAAAACAGAACTACGACAACCATACAGCCTTCAGGGTT-AGCGAATGAA
TTCCTTGATTCCAATCAGACACCAGAAGCCAGCTTGTGCAGATTCAAGTAGACCATACCACTGTATCAGCTCCTTGCACC
ATGACCATGAGGGCTCAA--------TCCACCACATGTCTGGAAATAGTGGCTCTTTATCGCAATCTTGCAAAGGGCATG
ACCAATTCTCACAAGTATCCCTTGGTGATTTGTTCTTGCAGTTCGTCGAAGTTCCAAGCGTCATTGACCGAATAGTCACC
TGCCGAGCAGCCAGCAGGCATAAAAATCAATGGCATAAAAAGTATTTGCAATTTCT-------GAGTCTTATGTGCCTTG
AAAGCACATATGTATATAATGCTGATATGTAACTTAGTG-----------------------------------------
-----------------------------------------------------------------------------ATA
CTAGTGAAAAAACAGAGGATGTATATAATGCTCATACAAAACATACCAATTGAGTCCCTCCGAAGGGCAGTTAAATGAGC
ACAGCTGCAGGAAAATGCGTACACATTAGATTTAGTCATCGCAATGTATCAGCATAAAAGAGGTGGAGATATCCATGGGC
AGTA---ATTCATGACAAGTAGAACAACAGGATTCCTCTAAGACCACATATGA
>SNPs
----------------------------------------------------------S---------------------
---------------------------------SS--------------------------S----S---------S---
--S-----------S-----------------------------------------S-S-S-SSSSSS-S----------
-------------------------------------SSSSS----------------------------S---------
----------------------------------S--SSSSSSSSSSS--------------------------------
----------------------S--S------------------------------------------------------
----------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--S--------S-S-----------S-------SSSSSSSSSSSSSSS--------------------
----S-----S------------S-S-S-S-S------S---S--SS---------------------------------
---------SS-----------------S---SS-------------------------------S-------SSSSSS-
-------------------S---------------S----------S-SSS-----------------------------
--------------------------------------------------------------------------------
---SSSS-----------------------------------S--------S----------------------------
--------------------------S---S-SS---------SS---SSS---SSSSSSSSS-----------------
----------------------------S-----------------------S-----------SSS-------------
-S-----S----------S--S---S-----------------------------------------------------S
---------SS-----------------------------------------------------S------SS-------
-------S-S-----S---------------S---S---------S---------------------S------------
-----------------------SS--SSSSS--SSSS-SSS--S---S-------------------------------
------------S-------------------------------------SS-------S--S-----------------
----SS---S--S-----S--------S------------S----S----------------------------------
---S----------------S-----------S------S-----------------------S-------------S--
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S------------------------
-----------------S--------S-S-------------------------S------SSSSS--------------
--------------------------SSS------S----------------------SSS-------------------
S---------S------SSS---------SSSS----------------------------------------S-S----
-------------------S-S--------------------------------S-------------------S----S
SSSSS---------------S-----------------S-----S---S-------------------S--------S--
-------------------SSS-----------------------S--------------------S-------------
----S--------S--------------S-S---------S-S---------S--S-------S----------------
---S------------------------------------------------------------S---------------
-------------S---------------------S--S--------------S--------------------------
------S-----S-----S--S---------------------------S--S---SSS---------------------
------S-----------------------------------------------------S-------------------
------------S--------------S---------------------SSSS-----------------S----S-S--
-----------------------------S---------S----------------------------------------
-------------------S-S-------------S--SSSSSSS-----S-----SS------------------SS--
S---------------S-------S-------------------S-----------------------------SSSS--
----------------------S---------------------------------------------------------
---------------S-------------------------S----------SS--------------------------
---------------------S----------------------------------------------------------
---------------------S--------------S-S-----------------------S-S---------------
--------S-----------------------------------------------------------SS----------
-----SSS-SSSSSSS--------------------------------------------------------S-------
------S--SS---------------------------------S-----------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-------------------------------SSSSS-S-SSSSS---SSSSS---S-SS---SSSSS--S----------
------------------------------------------------------------------------------S-
S-------------------------------------------------------------------------------
----------------------------------------------S--------------------------------S
-----------------------------------------------------
>forward_648
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTTCAGGCGGA
GAGAGCAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_1660
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CCCGTTAGAAGCAGGAGCAA-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ACTCTTGGCCGACAGTTCTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_3090
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ACAGCTCCAAATGCTCTGCT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1569
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGCTCTTTGGAAGCCTCTGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_3622
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CCAAAATTTGCGGCACAGGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
