Multiple sequence alignment - TraesCS1A01G441900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G441900 chr1A 100.000 2655 0 0 1 2655 590561902 590559248 0.000000e+00 4903
1 TraesCS1A01G441900 chr1A 84.479 902 75 28 916 1771 590249642 590250524 0.000000e+00 830
2 TraesCS1A01G441900 chr1D 87.447 1649 83 36 300 1874 492103451 492105049 0.000000e+00 1784
3 TraesCS1A01G441900 chr1D 82.694 1173 87 49 916 2016 492136289 492137417 0.000000e+00 935
4 TraesCS1A01G441900 chr1D 98.406 251 4 0 1 251 254451813 254451563 2.430000e-120 442
5 TraesCS1A01G441900 chr1D 82.822 489 71 10 2138 2622 492137431 492137910 2.440000e-115 425
6 TraesCS1A01G441900 chr1D 96.813 251 8 0 1 251 85379867 85380117 1.140000e-113 420
7 TraesCS1A01G441900 chr1D 89.571 163 15 2 2360 2521 492428958 492428797 3.460000e-49 206
8 TraesCS1A01G441900 chr1D 95.385 65 3 0 2304 2368 492429429 492429365 1.300000e-18 104
9 TraesCS1A01G441900 chr5D 98.406 251 4 0 1 251 512407722 512407472 2.430000e-120 442
10 TraesCS1A01G441900 chr5D 98.008 251 5 0 1 251 6258093 6258343 1.130000e-118 436
11 TraesCS1A01G441900 chr5D 97.211 251 7 0 1 251 503308681 503308431 2.440000e-115 425
12 TraesCS1A01G441900 chr7B 98.008 251 5 0 1 251 663104591 663104341 1.130000e-118 436
13 TraesCS1A01G441900 chr7B 97.610 251 6 0 1 251 137681670 137681420 5.250000e-117 431
14 TraesCS1A01G441900 chr4A 97.222 252 6 1 1 251 309451388 309451639 2.440000e-115 425
15 TraesCS1A01G441900 chr1B 97.211 251 7 0 1 251 633711978 633711728 2.440000e-115 425
16 TraesCS1A01G441900 chr1B 82.490 257 16 12 1772 2027 684897083 684897311 5.800000e-47 198
17 TraesCS1A01G441900 chr1B 80.000 280 37 10 1392 1662 684896695 684896964 3.490000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G441900 chr1A 590559248 590561902 2654 True 4903 4903 100.000 1 2655 1 chr1A.!!$R1 2654
1 TraesCS1A01G441900 chr1A 590249642 590250524 882 False 830 830 84.479 916 1771 1 chr1A.!!$F1 855
2 TraesCS1A01G441900 chr1D 492103451 492105049 1598 False 1784 1784 87.447 300 1874 1 chr1D.!!$F2 1574
3 TraesCS1A01G441900 chr1D 492136289 492137910 1621 False 680 935 82.758 916 2622 2 chr1D.!!$F3 1706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.030908 CTGGGCTCTCGTATTCGTCC 59.969 60.0 0.0 0.0 38.33 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2190 0.320771 CACCCAACCCTCAGTCTTCG 60.321 60.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.970859 ATTGTCAAGTATCTTTAGGGATGAAG 57.029 34.615 0.00 0.00 0.00 3.02
26 27 7.733773 TGTCAAGTATCTTTAGGGATGAAGA 57.266 36.000 0.00 0.00 36.43 2.87
27 28 8.324191 TGTCAAGTATCTTTAGGGATGAAGAT 57.676 34.615 4.29 4.29 43.17 2.40
28 29 8.424918 TGTCAAGTATCTTTAGGGATGAAGATC 58.575 37.037 2.19 0.00 40.69 2.75
29 30 8.646900 GTCAAGTATCTTTAGGGATGAAGATCT 58.353 37.037 2.19 0.00 40.69 2.75
30 31 8.865090 TCAAGTATCTTTAGGGATGAAGATCTC 58.135 37.037 0.00 0.00 40.69 2.75
31 32 7.461182 AGTATCTTTAGGGATGAAGATCTCG 57.539 40.000 0.00 0.00 40.69 4.04
32 33 5.736951 ATCTTTAGGGATGAAGATCTCGG 57.263 43.478 0.00 0.00 37.96 4.63
33 34 3.322254 TCTTTAGGGATGAAGATCTCGGC 59.678 47.826 0.00 0.00 33.78 5.54
34 35 2.381752 TAGGGATGAAGATCTCGGCA 57.618 50.000 0.00 0.00 33.78 5.69
35 36 1.500474 AGGGATGAAGATCTCGGCAA 58.500 50.000 0.00 0.00 33.78 4.52
36 37 1.415659 AGGGATGAAGATCTCGGCAAG 59.584 52.381 0.00 0.00 33.78 4.01
37 38 1.414181 GGGATGAAGATCTCGGCAAGA 59.586 52.381 0.00 0.00 38.72 3.02
39 40 3.259374 GGGATGAAGATCTCGGCAAGATA 59.741 47.826 0.00 0.00 45.06 1.98
40 41 4.081198 GGGATGAAGATCTCGGCAAGATAT 60.081 45.833 0.00 0.00 45.06 1.63
41 42 4.869297 GGATGAAGATCTCGGCAAGATATG 59.131 45.833 0.00 0.00 45.06 1.78
42 43 5.337089 GGATGAAGATCTCGGCAAGATATGA 60.337 44.000 0.00 0.00 45.06 2.15
43 44 5.535753 TGAAGATCTCGGCAAGATATGAA 57.464 39.130 0.00 0.00 45.06 2.57
44 45 5.536260 TGAAGATCTCGGCAAGATATGAAG 58.464 41.667 0.00 0.00 45.06 3.02
45 46 5.069648 TGAAGATCTCGGCAAGATATGAAGT 59.930 40.000 0.00 0.00 45.06 3.01
46 47 5.543507 AGATCTCGGCAAGATATGAAGTT 57.456 39.130 1.16 0.00 45.06 2.66
47 48 5.537188 AGATCTCGGCAAGATATGAAGTTC 58.463 41.667 0.00 0.00 45.06 3.01
48 49 5.304101 AGATCTCGGCAAGATATGAAGTTCT 59.696 40.000 4.17 0.00 45.06 3.01
49 50 5.344743 TCTCGGCAAGATATGAAGTTCTT 57.655 39.130 4.17 0.08 32.48 2.52
50 51 6.073873 GATCTCGGCAAGATATGAAGTTCTTG 60.074 42.308 4.17 8.02 45.06 3.02
85 86 6.954487 AAAACCGATCTACTTCTTTTTGGT 57.046 33.333 0.00 0.00 0.00 3.67
86 87 8.454570 AAAAACCGATCTACTTCTTTTTGGTA 57.545 30.769 0.00 0.00 0.00 3.25
87 88 8.631480 AAAACCGATCTACTTCTTTTTGGTAT 57.369 30.769 0.00 0.00 0.00 2.73
88 89 8.631480 AAACCGATCTACTTCTTTTTGGTATT 57.369 30.769 0.00 0.00 0.00 1.89
89 90 8.631480 AACCGATCTACTTCTTTTTGGTATTT 57.369 30.769 0.00 0.00 0.00 1.40
90 91 8.631480 ACCGATCTACTTCTTTTTGGTATTTT 57.369 30.769 0.00 0.00 0.00 1.82
91 92 9.729281 ACCGATCTACTTCTTTTTGGTATTTTA 57.271 29.630 0.00 0.00 0.00 1.52
114 115 9.550406 TTTAGACTAAATTCTTTTGTTCCTCGA 57.450 29.630 3.44 0.00 0.00 4.04
115 116 9.720769 TTAGACTAAATTCTTTTGTTCCTCGAT 57.279 29.630 0.00 0.00 0.00 3.59
117 118 9.152595 AGACTAAATTCTTTTGTTCCTCGATAC 57.847 33.333 0.00 0.00 0.00 2.24
118 119 9.152595 GACTAAATTCTTTTGTTCCTCGATACT 57.847 33.333 0.00 0.00 0.00 2.12
119 120 9.152595 ACTAAATTCTTTTGTTCCTCGATACTC 57.847 33.333 0.00 0.00 0.00 2.59
120 121 7.979444 AAATTCTTTTGTTCCTCGATACTCA 57.021 32.000 0.00 0.00 0.00 3.41
121 122 7.979444 AATTCTTTTGTTCCTCGATACTCAA 57.021 32.000 0.00 0.00 0.00 3.02
122 123 8.567285 AATTCTTTTGTTCCTCGATACTCAAT 57.433 30.769 0.00 0.00 0.00 2.57
123 124 7.596749 TTCTTTTGTTCCTCGATACTCAATC 57.403 36.000 0.00 0.00 0.00 2.67
124 125 6.697395 TCTTTTGTTCCTCGATACTCAATCA 58.303 36.000 0.00 0.00 33.87 2.57
125 126 7.158697 TCTTTTGTTCCTCGATACTCAATCAA 58.841 34.615 0.00 0.00 33.87 2.57
126 127 7.659799 TCTTTTGTTCCTCGATACTCAATCAAA 59.340 33.333 0.00 0.00 33.87 2.69
127 128 6.721571 TTGTTCCTCGATACTCAATCAAAC 57.278 37.500 0.00 0.00 33.87 2.93
128 129 5.175859 TGTTCCTCGATACTCAATCAAACC 58.824 41.667 0.00 0.00 33.87 3.27
129 130 4.402056 TCCTCGATACTCAATCAAACCC 57.598 45.455 0.00 0.00 33.87 4.11
130 131 4.030913 TCCTCGATACTCAATCAAACCCT 58.969 43.478 0.00 0.00 33.87 4.34
131 132 4.099573 TCCTCGATACTCAATCAAACCCTC 59.900 45.833 0.00 0.00 33.87 4.30
132 133 4.100189 CCTCGATACTCAATCAAACCCTCT 59.900 45.833 0.00 0.00 33.87 3.69
133 134 5.395768 CCTCGATACTCAATCAAACCCTCTT 60.396 44.000 0.00 0.00 33.87 2.85
134 135 6.049955 TCGATACTCAATCAAACCCTCTTT 57.950 37.500 0.00 0.00 33.87 2.52
135 136 6.472887 TCGATACTCAATCAAACCCTCTTTT 58.527 36.000 0.00 0.00 33.87 2.27
136 137 6.940298 TCGATACTCAATCAAACCCTCTTTTT 59.060 34.615 0.00 0.00 33.87 1.94
137 138 8.098286 TCGATACTCAATCAAACCCTCTTTTTA 58.902 33.333 0.00 0.00 33.87 1.52
138 139 8.726988 CGATACTCAATCAAACCCTCTTTTTAA 58.273 33.333 0.00 0.00 33.87 1.52
142 143 8.977412 ACTCAATCAAACCCTCTTTTTAAAAGA 58.023 29.630 17.71 17.71 0.00 2.52
143 144 9.987272 CTCAATCAAACCCTCTTTTTAAAAGAT 57.013 29.630 18.81 3.71 0.00 2.40
144 145 9.762933 TCAATCAAACCCTCTTTTTAAAAGATG 57.237 29.630 18.81 15.86 0.00 2.90
145 146 8.992073 CAATCAAACCCTCTTTTTAAAAGATGG 58.008 33.333 28.06 28.06 37.85 3.51
146 147 7.906199 TCAAACCCTCTTTTTAAAAGATGGA 57.094 32.000 32.96 16.27 36.13 3.41
147 148 8.312669 TCAAACCCTCTTTTTAAAAGATGGAA 57.687 30.769 32.96 19.24 36.13 3.53
148 149 8.933653 TCAAACCCTCTTTTTAAAAGATGGAAT 58.066 29.630 32.96 23.03 36.13 3.01
149 150 9.208022 CAAACCCTCTTTTTAAAAGATGGAATC 57.792 33.333 32.96 0.00 46.04 2.52
163 164 1.506025 GGAATCTTCCTCTGGGCTCT 58.494 55.000 1.57 0.00 44.11 4.09
164 165 1.416030 GGAATCTTCCTCTGGGCTCTC 59.584 57.143 1.57 0.00 44.11 3.20
165 166 1.068434 GAATCTTCCTCTGGGCTCTCG 59.932 57.143 0.00 0.00 0.00 4.04
166 167 0.032615 ATCTTCCTCTGGGCTCTCGT 60.033 55.000 0.00 0.00 0.00 4.18
167 168 0.624254 TCTTCCTCTGGGCTCTCGTA 59.376 55.000 0.00 0.00 0.00 3.43
168 169 1.215673 TCTTCCTCTGGGCTCTCGTAT 59.784 52.381 0.00 0.00 0.00 3.06
169 170 2.035632 CTTCCTCTGGGCTCTCGTATT 58.964 52.381 0.00 0.00 0.00 1.89
170 171 1.693627 TCCTCTGGGCTCTCGTATTC 58.306 55.000 0.00 0.00 0.00 1.75
171 172 0.312416 CCTCTGGGCTCTCGTATTCG 59.688 60.000 0.00 0.00 38.55 3.34
172 173 1.025812 CTCTGGGCTCTCGTATTCGT 58.974 55.000 0.00 0.00 38.33 3.85
173 174 1.002251 CTCTGGGCTCTCGTATTCGTC 60.002 57.143 0.00 0.00 38.33 4.20
174 175 0.030908 CTGGGCTCTCGTATTCGTCC 59.969 60.000 0.00 0.00 38.33 4.79
175 176 0.395311 TGGGCTCTCGTATTCGTCCT 60.395 55.000 0.00 0.00 38.33 3.85
176 177 0.311477 GGGCTCTCGTATTCGTCCTC 59.689 60.000 0.00 0.00 38.33 3.71
177 178 1.310904 GGCTCTCGTATTCGTCCTCT 58.689 55.000 0.00 0.00 38.33 3.69
178 179 1.002251 GGCTCTCGTATTCGTCCTCTG 60.002 57.143 0.00 0.00 38.33 3.35
179 180 1.941294 GCTCTCGTATTCGTCCTCTGA 59.059 52.381 0.00 0.00 38.33 3.27
180 181 2.355132 GCTCTCGTATTCGTCCTCTGAA 59.645 50.000 0.00 0.00 38.33 3.02
181 182 3.003897 GCTCTCGTATTCGTCCTCTGAAT 59.996 47.826 0.00 0.00 39.32 2.57
182 183 4.778904 CTCTCGTATTCGTCCTCTGAATC 58.221 47.826 0.00 0.00 37.28 2.52
183 184 4.452825 TCTCGTATTCGTCCTCTGAATCT 58.547 43.478 0.00 0.00 37.28 2.40
184 185 4.882427 TCTCGTATTCGTCCTCTGAATCTT 59.118 41.667 0.00 0.00 37.28 2.40
185 186 5.007823 TCTCGTATTCGTCCTCTGAATCTTC 59.992 44.000 0.00 0.00 37.28 2.87
186 187 4.882427 TCGTATTCGTCCTCTGAATCTTCT 59.118 41.667 0.00 0.00 37.28 2.85
187 188 5.357314 TCGTATTCGTCCTCTGAATCTTCTT 59.643 40.000 0.00 0.00 37.28 2.52
188 189 5.683743 CGTATTCGTCCTCTGAATCTTCTTC 59.316 44.000 0.00 0.00 37.28 2.87
189 190 5.930837 ATTCGTCCTCTGAATCTTCTTCT 57.069 39.130 0.00 0.00 30.39 2.85
190 191 4.710423 TCGTCCTCTGAATCTTCTTCTG 57.290 45.455 0.00 0.00 0.00 3.02
191 192 4.336280 TCGTCCTCTGAATCTTCTTCTGA 58.664 43.478 0.00 0.00 0.00 3.27
192 193 4.397730 TCGTCCTCTGAATCTTCTTCTGAG 59.602 45.833 12.33 12.33 41.34 3.35
193 194 4.157656 CGTCCTCTGAATCTTCTTCTGAGT 59.842 45.833 15.93 0.00 40.60 3.41
194 195 5.650543 GTCCTCTGAATCTTCTTCTGAGTC 58.349 45.833 15.93 8.59 40.60 3.36
195 196 5.418840 GTCCTCTGAATCTTCTTCTGAGTCT 59.581 44.000 15.93 0.00 40.60 3.24
196 197 6.015918 TCCTCTGAATCTTCTTCTGAGTCTT 58.984 40.000 15.93 0.00 40.60 3.01
197 198 6.152661 TCCTCTGAATCTTCTTCTGAGTCTTC 59.847 42.308 15.93 0.00 40.60 2.87
198 199 6.279513 TCTGAATCTTCTTCTGAGTCTTCC 57.720 41.667 0.00 0.00 30.91 3.46
199 200 6.015918 TCTGAATCTTCTTCTGAGTCTTCCT 58.984 40.000 0.00 0.00 30.91 3.36
200 201 6.152661 TCTGAATCTTCTTCTGAGTCTTCCTC 59.847 42.308 0.00 0.00 40.89 3.71
201 202 6.015918 TGAATCTTCTTCTGAGTCTTCCTCT 58.984 40.000 0.00 0.00 41.11 3.69
202 203 7.178573 TGAATCTTCTTCTGAGTCTTCCTCTA 58.821 38.462 0.00 0.00 41.11 2.43
203 204 7.671819 TGAATCTTCTTCTGAGTCTTCCTCTAA 59.328 37.037 0.00 0.00 41.11 2.10
204 205 8.429237 AATCTTCTTCTGAGTCTTCCTCTAAA 57.571 34.615 0.00 0.00 41.11 1.85
205 206 7.461182 TCTTCTTCTGAGTCTTCCTCTAAAG 57.539 40.000 0.00 0.00 41.11 1.85
206 207 7.007723 TCTTCTTCTGAGTCTTCCTCTAAAGT 58.992 38.462 0.00 0.00 41.11 2.66
207 208 8.164733 TCTTCTTCTGAGTCTTCCTCTAAAGTA 58.835 37.037 0.00 0.00 41.11 2.24
208 209 7.690952 TCTTCTGAGTCTTCCTCTAAAGTAC 57.309 40.000 0.00 0.00 41.11 2.73
209 210 6.660094 TCTTCTGAGTCTTCCTCTAAAGTACC 59.340 42.308 0.00 0.00 41.11 3.34
210 211 5.888901 TCTGAGTCTTCCTCTAAAGTACCA 58.111 41.667 0.00 0.00 41.11 3.25
211 212 6.494952 TCTGAGTCTTCCTCTAAAGTACCAT 58.505 40.000 0.00 0.00 41.11 3.55
212 213 7.640313 TCTGAGTCTTCCTCTAAAGTACCATA 58.360 38.462 0.00 0.00 41.11 2.74
213 214 8.282982 TCTGAGTCTTCCTCTAAAGTACCATAT 58.717 37.037 0.00 0.00 41.11 1.78
214 215 8.840200 TGAGTCTTCCTCTAAAGTACCATATT 57.160 34.615 0.00 0.00 41.11 1.28
215 216 9.268282 TGAGTCTTCCTCTAAAGTACCATATTT 57.732 33.333 0.00 0.00 41.11 1.40
219 220 9.901172 TCTTCCTCTAAAGTACCATATTTTTCC 57.099 33.333 0.00 0.00 0.00 3.13
220 221 9.907229 CTTCCTCTAAAGTACCATATTTTTCCT 57.093 33.333 0.00 0.00 0.00 3.36
221 222 9.901172 TTCCTCTAAAGTACCATATTTTTCCTC 57.099 33.333 0.00 0.00 0.00 3.71
222 223 9.280456 TCCTCTAAAGTACCATATTTTTCCTCT 57.720 33.333 0.00 0.00 0.00 3.69
223 224 9.331282 CCTCTAAAGTACCATATTTTTCCTCTG 57.669 37.037 0.00 0.00 0.00 3.35
224 225 8.732746 TCTAAAGTACCATATTTTTCCTCTGC 57.267 34.615 0.00 0.00 0.00 4.26
225 226 6.436843 AAAGTACCATATTTTTCCTCTGCG 57.563 37.500 0.00 0.00 0.00 5.18
226 227 3.877508 AGTACCATATTTTTCCTCTGCGC 59.122 43.478 0.00 0.00 0.00 6.09
227 228 3.004752 ACCATATTTTTCCTCTGCGCT 57.995 42.857 9.73 0.00 0.00 5.92
228 229 3.356290 ACCATATTTTTCCTCTGCGCTT 58.644 40.909 9.73 0.00 0.00 4.68
229 230 3.763897 ACCATATTTTTCCTCTGCGCTTT 59.236 39.130 9.73 0.00 0.00 3.51
230 231 4.142381 ACCATATTTTTCCTCTGCGCTTTC 60.142 41.667 9.73 0.00 0.00 2.62
231 232 4.354587 CATATTTTTCCTCTGCGCTTTCC 58.645 43.478 9.73 0.00 0.00 3.13
232 233 0.958822 TTTTTCCTCTGCGCTTTCCC 59.041 50.000 9.73 0.00 0.00 3.97
233 234 0.893727 TTTTCCTCTGCGCTTTCCCC 60.894 55.000 9.73 0.00 0.00 4.81
234 235 1.779061 TTTCCTCTGCGCTTTCCCCT 61.779 55.000 9.73 0.00 0.00 4.79
235 236 2.437359 CCTCTGCGCTTTCCCCTG 60.437 66.667 9.73 0.00 0.00 4.45
236 237 2.437359 CTCTGCGCTTTCCCCTGG 60.437 66.667 9.73 0.00 0.00 4.45
237 238 3.984193 CTCTGCGCTTTCCCCTGGG 62.984 68.421 9.73 5.50 0.00 4.45
243 244 3.983420 CTTTCCCCTGGGCTGCCA 61.983 66.667 22.05 5.83 34.68 4.92
244 245 3.275271 TTTCCCCTGGGCTGCCAT 61.275 61.111 22.05 0.00 34.68 4.40
245 246 1.933284 TTTCCCCTGGGCTGCCATA 60.933 57.895 22.05 7.88 34.68 2.74
246 247 1.295915 TTTCCCCTGGGCTGCCATAT 61.296 55.000 22.05 0.00 34.68 1.78
247 248 1.295915 TTCCCCTGGGCTGCCATATT 61.296 55.000 22.05 0.00 34.68 1.28
248 249 1.228675 CCCCTGGGCTGCCATATTC 60.229 63.158 22.05 2.67 0.00 1.75
249 250 1.601759 CCCTGGGCTGCCATATTCG 60.602 63.158 22.05 0.81 0.00 3.34
250 251 1.149174 CCTGGGCTGCCATATTCGT 59.851 57.895 22.05 0.00 0.00 3.85
251 252 0.396435 CCTGGGCTGCCATATTCGTA 59.604 55.000 22.05 0.00 0.00 3.43
252 253 1.512926 CTGGGCTGCCATATTCGTAC 58.487 55.000 22.05 0.00 0.00 3.67
253 254 0.833949 TGGGCTGCCATATTCGTACA 59.166 50.000 22.05 2.47 0.00 2.90
254 255 1.210722 TGGGCTGCCATATTCGTACAA 59.789 47.619 22.05 0.00 0.00 2.41
255 256 2.294074 GGGCTGCCATATTCGTACAAA 58.706 47.619 22.05 0.00 0.00 2.83
256 257 2.685897 GGGCTGCCATATTCGTACAAAA 59.314 45.455 22.05 0.00 0.00 2.44
257 258 3.129638 GGGCTGCCATATTCGTACAAAAA 59.870 43.478 22.05 0.00 0.00 1.94
258 259 4.202111 GGGCTGCCATATTCGTACAAAAAT 60.202 41.667 22.05 0.00 0.00 1.82
259 260 5.009210 GGGCTGCCATATTCGTACAAAAATA 59.991 40.000 22.05 0.00 0.00 1.40
260 261 6.142817 GGCTGCCATATTCGTACAAAAATAG 58.857 40.000 15.17 0.00 0.00 1.73
261 262 6.238648 GGCTGCCATATTCGTACAAAAATAGT 60.239 38.462 15.17 0.00 0.00 2.12
262 263 7.193595 GCTGCCATATTCGTACAAAAATAGTT 58.806 34.615 0.00 0.00 0.00 2.24
263 264 7.376072 GCTGCCATATTCGTACAAAAATAGTTC 59.624 37.037 0.00 0.00 0.00 3.01
264 265 8.270080 TGCCATATTCGTACAAAAATAGTTCA 57.730 30.769 0.00 0.00 0.00 3.18
265 266 8.898761 TGCCATATTCGTACAAAAATAGTTCAT 58.101 29.630 0.00 0.00 0.00 2.57
266 267 9.730420 GCCATATTCGTACAAAAATAGTTCATT 57.270 29.630 0.00 0.00 0.00 2.57
343 344 6.493449 AATGCGTTTAAAAATGGGGAATTG 57.507 33.333 0.00 0.00 0.00 2.32
350 351 7.094848 CGTTTAAAAATGGGGAATTGCAAGAAT 60.095 33.333 4.94 0.00 0.00 2.40
352 353 9.447157 TTTAAAAATGGGGAATTGCAAGAATAG 57.553 29.630 4.94 0.00 0.00 1.73
355 356 6.872585 AATGGGGAATTGCAAGAATAGAAA 57.127 33.333 4.94 0.00 0.00 2.52
385 386 6.884280 AAATCAAGACAGAGAAATTCGGTT 57.116 33.333 0.00 0.00 34.19 4.44
386 387 5.869753 ATCAAGACAGAGAAATTCGGTTG 57.130 39.130 0.00 0.00 34.19 3.77
387 388 4.956085 TCAAGACAGAGAAATTCGGTTGA 58.044 39.130 2.49 0.00 34.19 3.18
389 390 5.466728 TCAAGACAGAGAAATTCGGTTGAAG 59.533 40.000 2.49 0.00 37.57 3.02
390 391 5.215252 AGACAGAGAAATTCGGTTGAAGA 57.785 39.130 2.49 0.00 37.57 2.87
391 392 4.991687 AGACAGAGAAATTCGGTTGAAGAC 59.008 41.667 2.49 0.00 37.57 3.01
459 460 2.178912 AGCGTTTTCTTCATCCGGAA 57.821 45.000 9.01 0.00 0.00 4.30
462 464 4.258543 AGCGTTTTCTTCATCCGGAATAA 58.741 39.130 9.01 4.78 34.32 1.40
463 465 4.094442 AGCGTTTTCTTCATCCGGAATAAC 59.906 41.667 9.01 2.11 34.32 1.89
468 470 4.041740 TCTTCATCCGGAATAACTGACG 57.958 45.455 9.01 5.09 34.32 4.35
470 472 1.202486 TCATCCGGAATAACTGACGCC 60.202 52.381 9.01 0.00 0.00 5.68
471 473 0.106149 ATCCGGAATAACTGACGCCC 59.894 55.000 9.01 0.00 0.00 6.13
473 475 0.179056 CCGGAATAACTGACGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
476 478 2.132762 GGAATAACTGACGCCCATACG 58.867 52.381 0.00 0.00 39.50 3.06
481 483 1.956170 CTGACGCCCATACGGATGC 60.956 63.158 0.62 0.00 37.37 3.91
485 487 2.382746 CGCCCATACGGATGCATCG 61.383 63.158 20.15 16.86 0.00 3.84
486 488 1.005037 GCCCATACGGATGCATCGA 60.005 57.895 20.15 8.68 0.00 3.59
487 489 0.391661 GCCCATACGGATGCATCGAT 60.392 55.000 20.15 12.91 0.00 3.59
488 490 1.645034 CCCATACGGATGCATCGATC 58.355 55.000 20.15 6.01 0.00 3.69
489 491 1.205655 CCCATACGGATGCATCGATCT 59.794 52.381 20.15 5.11 0.00 2.75
490 492 2.427095 CCCATACGGATGCATCGATCTA 59.573 50.000 20.15 7.09 0.00 1.98
496 498 5.644977 ACGGATGCATCGATCTAATCTAA 57.355 39.130 20.15 0.00 0.00 2.10
500 502 6.393990 GGATGCATCGATCTAATCTAACACT 58.606 40.000 20.15 0.00 0.00 3.55
505 507 9.764363 TGCATCGATCTAATCTAACACTAAAAT 57.236 29.630 0.00 0.00 0.00 1.82
536 546 3.552604 ACAAACGTCAATGAATTCCGG 57.447 42.857 2.27 0.00 0.00 5.14
576 586 1.493772 CGCTGTCTACCGAAACAACA 58.506 50.000 0.00 0.00 0.00 3.33
586 596 0.111001 CGAAACAACACTAACCGGCG 60.111 55.000 0.00 0.00 0.00 6.46
604 614 2.159085 GGCGCTAAAGGTGTCATACTCT 60.159 50.000 7.64 0.00 0.00 3.24
726 736 1.143073 GGTATCCTGGGCCGATTCTTT 59.857 52.381 0.00 0.00 0.00 2.52
728 738 0.753111 ATCCTGGGCCGATTCTTTGC 60.753 55.000 0.00 0.00 0.00 3.68
735 745 1.948721 GCCGATTCTTTGCCTTGGGG 61.949 60.000 0.00 0.00 0.00 4.96
760 770 6.237701 GCTTAGCGTCAGTCTCTCTTAATTTG 60.238 42.308 0.00 0.00 0.00 2.32
762 772 5.164954 AGCGTCAGTCTCTCTTAATTTGAC 58.835 41.667 0.00 0.00 0.00 3.18
770 780 6.498651 AGTCTCTCTTAATTTGACCTCCTTCA 59.501 38.462 0.00 0.00 0.00 3.02
845 856 2.573869 CGTGCTCGTGGTGGAGAT 59.426 61.111 0.00 0.00 36.08 2.75
893 904 3.493503 GCGGACTCCAAAGGAATAATACG 59.506 47.826 0.00 0.00 0.00 3.06
931 956 5.232838 GGAACGAAAGGTATAATACGTGGTG 59.767 44.000 0.00 0.00 34.36 4.17
951 978 1.652563 GTCGTTGCAGACCAAACCC 59.347 57.895 0.00 0.00 34.68 4.11
952 979 1.890041 TCGTTGCAGACCAAACCCG 60.890 57.895 0.00 0.00 34.68 5.28
953 980 1.890041 CGTTGCAGACCAAACCCGA 60.890 57.895 0.00 0.00 34.68 5.14
954 981 1.234615 CGTTGCAGACCAAACCCGAT 61.235 55.000 0.00 0.00 34.68 4.18
1149 1190 0.804364 TGGATTGAATGTCGTGCTGC 59.196 50.000 0.00 0.00 0.00 5.25
1186 1236 8.856103 TGTATCTATCTATTTTGTGGTCGATCA 58.144 33.333 0.00 0.00 0.00 2.92
1187 1237 9.862371 GTATCTATCTATTTTGTGGTCGATCAT 57.138 33.333 0.00 0.00 0.00 2.45
1188 1238 8.994429 ATCTATCTATTTTGTGGTCGATCATC 57.006 34.615 0.00 0.00 0.00 2.92
1189 1239 7.951591 TCTATCTATTTTGTGGTCGATCATCA 58.048 34.615 0.00 0.00 0.00 3.07
1190 1240 8.588472 TCTATCTATTTTGTGGTCGATCATCAT 58.412 33.333 0.00 0.00 0.00 2.45
1191 1241 7.664082 ATCTATTTTGTGGTCGATCATCATC 57.336 36.000 0.00 0.00 0.00 2.92
1209 1259 5.614324 TCATCGTTCATATTCTTCACCCT 57.386 39.130 0.00 0.00 0.00 4.34
1210 1260 5.359756 TCATCGTTCATATTCTTCACCCTG 58.640 41.667 0.00 0.00 0.00 4.45
1211 1261 3.531538 TCGTTCATATTCTTCACCCTGC 58.468 45.455 0.00 0.00 0.00 4.85
1212 1262 3.055458 TCGTTCATATTCTTCACCCTGCA 60.055 43.478 0.00 0.00 0.00 4.41
1315 1369 3.897505 AGCTTTACAACATGGGCTTTTCT 59.102 39.130 0.00 0.00 0.00 2.52
1340 1394 2.354805 GCAACCGAGTACAATCTCCCTT 60.355 50.000 0.00 0.00 0.00 3.95
1631 1693 1.599916 GCAAGGAGATACGTACGCCTC 60.600 57.143 16.72 17.98 36.61 4.70
1655 1717 1.026718 CAAGGAACGGGCTGGATGAC 61.027 60.000 0.00 0.00 0.00 3.06
1659 1721 0.036388 GAACGGGCTGGATGACTTCA 60.036 55.000 0.00 0.00 0.00 3.02
1695 1785 2.217750 TGAAACATGACTGGTGGAACG 58.782 47.619 0.00 0.00 38.12 3.95
1761 1851 3.436577 AGATCCATGATGAATGCTCCC 57.563 47.619 0.00 0.00 34.67 4.30
1881 2001 8.164070 AGACCTAATCCTTTGTGATTGTTTACT 58.836 33.333 0.00 0.00 35.77 2.24
1918 2038 5.630415 AATCGTCTCAATTATCCCCTTGA 57.370 39.130 0.00 0.00 0.00 3.02
1919 2039 4.402056 TCGTCTCAATTATCCCCTTGAC 57.598 45.455 0.00 0.00 0.00 3.18
1922 2042 5.045869 TCGTCTCAATTATCCCCTTGACTTT 60.046 40.000 0.00 0.00 0.00 2.66
1932 2052 9.907229 ATTATCCCCTTGACTTTTACTAGAAAG 57.093 33.333 0.00 0.00 41.34 2.62
1934 2054 7.860649 TCCCCTTGACTTTTACTAGAAAGTA 57.139 36.000 9.00 0.00 46.73 2.24
1935 2055 8.445361 TCCCCTTGACTTTTACTAGAAAGTAT 57.555 34.615 9.00 0.00 46.73 2.12
1936 2056 8.319146 TCCCCTTGACTTTTACTAGAAAGTATG 58.681 37.037 9.00 4.11 46.73 2.39
1937 2057 8.101419 CCCCTTGACTTTTACTAGAAAGTATGT 58.899 37.037 9.00 0.00 46.73 2.29
1964 2084 3.878699 TCGTCCATCCATTCATCATGTTG 59.121 43.478 0.00 0.00 0.00 3.33
1965 2085 3.878699 CGTCCATCCATTCATCATGTTGA 59.121 43.478 2.22 2.22 0.00 3.18
1966 2086 4.517832 CGTCCATCCATTCATCATGTTGAT 59.482 41.667 7.29 0.00 37.65 2.57
1967 2087 5.702209 CGTCCATCCATTCATCATGTTGATA 59.298 40.000 7.29 0.32 34.28 2.15
1968 2088 6.205270 CGTCCATCCATTCATCATGTTGATAA 59.795 38.462 7.29 0.00 34.28 1.75
1969 2089 7.365741 GTCCATCCATTCATCATGTTGATAAC 58.634 38.462 7.29 0.00 34.28 1.89
1970 2090 7.230108 GTCCATCCATTCATCATGTTGATAACT 59.770 37.037 7.29 0.00 34.28 2.24
1971 2091 7.781219 TCCATCCATTCATCATGTTGATAACTT 59.219 33.333 7.29 0.00 34.28 2.66
1972 2092 8.418662 CCATCCATTCATCATGTTGATAACTTT 58.581 33.333 7.29 0.00 34.28 2.66
1981 2101 6.074648 TCATGTTGATAACTTTTGGTCCCTT 58.925 36.000 0.00 0.00 0.00 3.95
1983 2103 4.586841 TGTTGATAACTTTTGGTCCCTTGG 59.413 41.667 0.00 0.00 0.00 3.61
1988 2108 3.087370 ACTTTTGGTCCCTTGGCTATC 57.913 47.619 0.00 0.00 0.00 2.08
2004 2124 4.521256 TGGCTATCAAACTGTACAAAACCC 59.479 41.667 0.00 0.00 0.00 4.11
2005 2125 4.521256 GGCTATCAAACTGTACAAAACCCA 59.479 41.667 0.00 0.00 0.00 4.51
2016 2136 7.668492 ACTGTACAAAACCCAAACTAACAAAA 58.332 30.769 0.00 0.00 0.00 2.44
2017 2137 8.315482 ACTGTACAAAACCCAAACTAACAAAAT 58.685 29.630 0.00 0.00 0.00 1.82
2018 2138 8.705048 TGTACAAAACCCAAACTAACAAAATC 57.295 30.769 0.00 0.00 0.00 2.17
2019 2139 6.895607 ACAAAACCCAAACTAACAAAATCG 57.104 33.333 0.00 0.00 0.00 3.34
2020 2140 5.813157 ACAAAACCCAAACTAACAAAATCGG 59.187 36.000 0.00 0.00 0.00 4.18
2021 2141 5.601583 AAACCCAAACTAACAAAATCGGT 57.398 34.783 0.00 0.00 0.00 4.69
2022 2142 5.601583 AACCCAAACTAACAAAATCGGTT 57.398 34.783 0.00 0.00 0.00 4.44
2024 2144 6.075762 ACCCAAACTAACAAAATCGGTTAC 57.924 37.500 0.00 0.00 0.00 2.50
2025 2145 5.829391 ACCCAAACTAACAAAATCGGTTACT 59.171 36.000 0.00 0.00 0.00 2.24
2026 2146 6.321945 ACCCAAACTAACAAAATCGGTTACTT 59.678 34.615 0.00 0.00 0.00 2.24
2029 2149 8.536407 CCAAACTAACAAAATCGGTTACTTTTG 58.464 33.333 6.72 6.72 44.22 2.44
2030 2150 8.536407 CAAACTAACAAAATCGGTTACTTTTGG 58.464 33.333 11.22 0.00 43.39 3.28
2031 2151 7.337480 ACTAACAAAATCGGTTACTTTTGGT 57.663 32.000 11.22 8.10 43.39 3.67
2032 2152 7.420002 ACTAACAAAATCGGTTACTTTTGGTC 58.580 34.615 11.22 0.00 43.39 4.02
2033 2153 5.838531 ACAAAATCGGTTACTTTTGGTCA 57.161 34.783 11.22 0.00 43.39 4.02
2034 2154 5.584442 ACAAAATCGGTTACTTTTGGTCAC 58.416 37.500 11.22 0.00 43.39 3.67
2035 2155 5.358725 ACAAAATCGGTTACTTTTGGTCACT 59.641 36.000 11.22 0.00 43.39 3.41
2036 2156 6.127563 ACAAAATCGGTTACTTTTGGTCACTT 60.128 34.615 11.22 0.00 43.39 3.16
2037 2157 6.459670 AAATCGGTTACTTTTGGTCACTTT 57.540 33.333 0.00 0.00 0.00 2.66
2038 2158 5.684550 ATCGGTTACTTTTGGTCACTTTC 57.315 39.130 0.00 0.00 0.00 2.62
2039 2159 3.878699 TCGGTTACTTTTGGTCACTTTCC 59.121 43.478 0.00 0.00 0.00 3.13
2040 2160 3.004002 CGGTTACTTTTGGTCACTTTCCC 59.996 47.826 0.00 0.00 0.00 3.97
2041 2161 3.004002 GGTTACTTTTGGTCACTTTCCCG 59.996 47.826 0.00 0.00 0.00 5.14
2042 2162 2.721425 ACTTTTGGTCACTTTCCCGA 57.279 45.000 0.00 0.00 0.00 5.14
2043 2163 2.294979 ACTTTTGGTCACTTTCCCGAC 58.705 47.619 0.00 0.00 0.00 4.79
2044 2164 2.092592 ACTTTTGGTCACTTTCCCGACT 60.093 45.455 0.00 0.00 32.57 4.18
2045 2165 3.135167 ACTTTTGGTCACTTTCCCGACTA 59.865 43.478 0.00 0.00 32.57 2.59
2046 2166 3.396260 TTTGGTCACTTTCCCGACTAG 57.604 47.619 0.00 0.00 32.57 2.57
2047 2167 1.263356 TGGTCACTTTCCCGACTAGG 58.737 55.000 0.00 0.00 40.63 3.02
2048 2168 1.264295 GGTCACTTTCCCGACTAGGT 58.736 55.000 0.00 0.00 38.74 3.08
2049 2169 1.204231 GGTCACTTTCCCGACTAGGTC 59.796 57.143 0.00 0.00 38.74 3.85
2050 2170 1.204231 GTCACTTTCCCGACTAGGTCC 59.796 57.143 0.00 0.00 38.74 4.46
2051 2171 1.203087 TCACTTTCCCGACTAGGTCCA 60.203 52.381 0.00 0.00 38.74 4.02
2052 2172 1.067071 CACTTTCCCGACTAGGTCCAC 60.067 57.143 0.00 0.00 38.74 4.02
2053 2173 1.203149 ACTTTCCCGACTAGGTCCACT 60.203 52.381 0.00 0.00 38.74 4.00
2054 2174 2.042162 ACTTTCCCGACTAGGTCCACTA 59.958 50.000 0.00 0.00 38.74 2.74
2055 2175 3.297736 CTTTCCCGACTAGGTCCACTAT 58.702 50.000 0.00 0.00 38.74 2.12
2056 2176 2.359981 TCCCGACTAGGTCCACTATG 57.640 55.000 0.00 0.00 38.74 2.23
2057 2177 1.567649 TCCCGACTAGGTCCACTATGT 59.432 52.381 0.00 0.00 38.74 2.29
2058 2178 2.779430 TCCCGACTAGGTCCACTATGTA 59.221 50.000 0.00 0.00 38.74 2.29
2059 2179 3.147629 CCCGACTAGGTCCACTATGTAG 58.852 54.545 0.00 0.00 38.74 2.74
2060 2180 3.147629 CCGACTAGGTCCACTATGTAGG 58.852 54.545 0.00 0.00 34.51 3.18
2061 2181 3.434739 CCGACTAGGTCCACTATGTAGGT 60.435 52.174 0.00 0.00 34.51 3.08
2062 2182 3.814283 CGACTAGGTCCACTATGTAGGTC 59.186 52.174 0.00 0.00 0.00 3.85
2063 2183 4.685302 CGACTAGGTCCACTATGTAGGTCA 60.685 50.000 0.00 0.00 0.00 4.02
2064 2184 4.794334 ACTAGGTCCACTATGTAGGTCAG 58.206 47.826 0.00 0.00 0.00 3.51
2065 2185 3.033659 AGGTCCACTATGTAGGTCAGG 57.966 52.381 0.00 0.00 0.00 3.86
2066 2186 2.315155 AGGTCCACTATGTAGGTCAGGT 59.685 50.000 0.00 0.00 0.00 4.00
2067 2187 2.431057 GGTCCACTATGTAGGTCAGGTG 59.569 54.545 0.00 0.00 35.28 4.00
2068 2188 3.362706 GTCCACTATGTAGGTCAGGTGA 58.637 50.000 0.00 0.00 36.53 4.02
2069 2189 3.961408 GTCCACTATGTAGGTCAGGTGAT 59.039 47.826 0.00 0.00 36.53 3.06
2070 2190 4.038162 GTCCACTATGTAGGTCAGGTGATC 59.962 50.000 0.00 0.00 36.53 2.92
2071 2191 3.004839 CCACTATGTAGGTCAGGTGATCG 59.995 52.174 0.00 0.00 36.53 3.69
2072 2192 3.883489 CACTATGTAGGTCAGGTGATCGA 59.117 47.826 0.00 0.00 36.53 3.59
2073 2193 4.338400 CACTATGTAGGTCAGGTGATCGAA 59.662 45.833 0.00 0.00 36.53 3.71
2074 2194 4.580995 ACTATGTAGGTCAGGTGATCGAAG 59.419 45.833 0.00 0.00 0.00 3.79
2075 2195 3.081710 TGTAGGTCAGGTGATCGAAGA 57.918 47.619 0.00 0.00 45.75 2.87
2076 2196 2.753452 TGTAGGTCAGGTGATCGAAGAC 59.247 50.000 0.00 0.00 42.51 3.01
2077 2197 2.223803 AGGTCAGGTGATCGAAGACT 57.776 50.000 0.00 0.00 42.51 3.24
2078 2198 1.821753 AGGTCAGGTGATCGAAGACTG 59.178 52.381 0.00 0.00 42.51 3.51
2079 2199 1.819288 GGTCAGGTGATCGAAGACTGA 59.181 52.381 7.96 7.96 42.51 3.41
2080 2200 2.159310 GGTCAGGTGATCGAAGACTGAG 60.159 54.545 11.21 0.00 42.51 3.35
2081 2201 2.095461 TCAGGTGATCGAAGACTGAGG 58.905 52.381 7.96 0.00 42.51 3.86
2082 2202 1.135915 CAGGTGATCGAAGACTGAGGG 59.864 57.143 0.00 0.00 42.51 4.30
2083 2203 1.187087 GGTGATCGAAGACTGAGGGT 58.813 55.000 0.00 0.00 42.51 4.34
2084 2204 1.550976 GGTGATCGAAGACTGAGGGTT 59.449 52.381 0.00 0.00 42.51 4.11
2085 2205 2.611518 GTGATCGAAGACTGAGGGTTG 58.388 52.381 0.00 0.00 42.51 3.77
2086 2206 1.550524 TGATCGAAGACTGAGGGTTGG 59.449 52.381 0.00 0.00 42.51 3.77
2087 2207 0.905357 ATCGAAGACTGAGGGTTGGG 59.095 55.000 0.00 0.00 42.51 4.12
2088 2208 0.471211 TCGAAGACTGAGGGTTGGGT 60.471 55.000 0.00 0.00 0.00 4.51
2089 2209 0.320771 CGAAGACTGAGGGTTGGGTG 60.321 60.000 0.00 0.00 0.00 4.61
2090 2210 1.056660 GAAGACTGAGGGTTGGGTGA 58.943 55.000 0.00 0.00 0.00 4.02
2091 2211 1.630878 GAAGACTGAGGGTTGGGTGAT 59.369 52.381 0.00 0.00 0.00 3.06
2092 2212 1.280457 AGACTGAGGGTTGGGTGATC 58.720 55.000 0.00 0.00 0.00 2.92
2093 2213 0.984230 GACTGAGGGTTGGGTGATCA 59.016 55.000 0.00 0.00 0.00 2.92
2094 2214 0.693049 ACTGAGGGTTGGGTGATCAC 59.307 55.000 17.91 17.91 0.00 3.06
2095 2215 0.987294 CTGAGGGTTGGGTGATCACT 59.013 55.000 24.50 3.40 0.00 3.41
2096 2216 1.352352 CTGAGGGTTGGGTGATCACTT 59.648 52.381 24.50 3.13 0.00 3.16
2097 2217 1.351017 TGAGGGTTGGGTGATCACTTC 59.649 52.381 24.50 17.02 0.00 3.01
2098 2218 0.698818 AGGGTTGGGTGATCACTTCC 59.301 55.000 24.50 18.24 0.00 3.46
2099 2219 0.404040 GGGTTGGGTGATCACTTCCA 59.596 55.000 24.50 20.51 0.00 3.53
2100 2220 1.203001 GGGTTGGGTGATCACTTCCAA 60.203 52.381 24.49 24.49 36.98 3.53
2101 2221 2.593026 GGTTGGGTGATCACTTCCAAA 58.407 47.619 27.87 11.31 40.45 3.28
2102 2222 2.962421 GGTTGGGTGATCACTTCCAAAA 59.038 45.455 27.87 12.66 40.45 2.44
2103 2223 3.243737 GGTTGGGTGATCACTTCCAAAAC 60.244 47.826 27.87 21.81 40.45 2.43
2104 2224 3.304911 TGGGTGATCACTTCCAAAACA 57.695 42.857 24.50 8.80 0.00 2.83
2105 2225 2.955660 TGGGTGATCACTTCCAAAACAC 59.044 45.455 24.50 4.49 0.00 3.32
2106 2226 3.222603 GGGTGATCACTTCCAAAACACT 58.777 45.455 24.50 0.00 0.00 3.55
2107 2227 3.253432 GGGTGATCACTTCCAAAACACTC 59.747 47.826 24.50 3.79 0.00 3.51
2108 2228 3.253432 GGTGATCACTTCCAAAACACTCC 59.747 47.826 24.50 0.00 0.00 3.85
2109 2229 3.882888 GTGATCACTTCCAAAACACTCCA 59.117 43.478 18.83 0.00 0.00 3.86
2110 2230 4.338118 GTGATCACTTCCAAAACACTCCAA 59.662 41.667 18.83 0.00 0.00 3.53
2111 2231 4.580167 TGATCACTTCCAAAACACTCCAAG 59.420 41.667 0.00 0.00 0.00 3.61
2112 2232 3.287222 TCACTTCCAAAACACTCCAAGG 58.713 45.455 0.00 0.00 0.00 3.61
2113 2233 2.031870 ACTTCCAAAACACTCCAAGGC 58.968 47.619 0.00 0.00 0.00 4.35
2114 2234 1.341209 CTTCCAAAACACTCCAAGGCC 59.659 52.381 0.00 0.00 0.00 5.19
2115 2235 0.469144 TCCAAAACACTCCAAGGCCC 60.469 55.000 0.00 0.00 0.00 5.80
2116 2236 0.469892 CCAAAACACTCCAAGGCCCT 60.470 55.000 0.00 0.00 0.00 5.19
2117 2237 0.675633 CAAAACACTCCAAGGCCCTG 59.324 55.000 0.00 0.00 0.00 4.45
2118 2238 1.115326 AAAACACTCCAAGGCCCTGC 61.115 55.000 0.00 0.00 0.00 4.85
2128 2248 2.592308 GGCCCTGCCGAAATCTCT 59.408 61.111 0.00 0.00 39.62 3.10
2129 2249 1.830145 GGCCCTGCCGAAATCTCTA 59.170 57.895 0.00 0.00 39.62 2.43
2130 2250 0.398318 GGCCCTGCCGAAATCTCTAT 59.602 55.000 0.00 0.00 39.62 1.98
2131 2251 1.202818 GGCCCTGCCGAAATCTCTATT 60.203 52.381 0.00 0.00 39.62 1.73
2132 2252 2.038557 GGCCCTGCCGAAATCTCTATTA 59.961 50.000 0.00 0.00 39.62 0.98
2133 2253 3.067833 GCCCTGCCGAAATCTCTATTAC 58.932 50.000 0.00 0.00 0.00 1.89
2134 2254 3.494398 GCCCTGCCGAAATCTCTATTACA 60.494 47.826 0.00 0.00 0.00 2.41
2135 2255 4.310769 CCCTGCCGAAATCTCTATTACAG 58.689 47.826 0.00 0.00 0.00 2.74
2136 2256 4.310769 CCTGCCGAAATCTCTATTACAGG 58.689 47.826 0.00 0.00 36.53 4.00
2192 2312 4.143333 CACCCTCGCCCTACCACG 62.143 72.222 0.00 0.00 0.00 4.94
2207 2327 4.394712 ACGCCCGCCTCTTTCCTG 62.395 66.667 0.00 0.00 0.00 3.86
2220 2340 3.411446 TCTTTCCTGTTGCAATGACGAT 58.589 40.909 0.59 0.00 0.00 3.73
2221 2341 3.189080 TCTTTCCTGTTGCAATGACGATG 59.811 43.478 0.59 0.00 0.00 3.84
2222 2342 2.470983 TCCTGTTGCAATGACGATGA 57.529 45.000 0.59 0.00 0.00 2.92
2225 2345 2.223409 CCTGTTGCAATGACGATGATGG 60.223 50.000 0.59 0.00 0.00 3.51
2252 2372 4.107051 GCTGCCATGCACCGACAC 62.107 66.667 0.00 0.00 33.79 3.67
2253 2373 2.359107 CTGCCATGCACCGACACT 60.359 61.111 0.00 0.00 33.79 3.55
2255 2375 1.518056 CTGCCATGCACCGACACTTT 61.518 55.000 0.00 0.00 33.79 2.66
2259 2379 0.943673 CATGCACCGACACTTTGACA 59.056 50.000 0.00 0.00 0.00 3.58
2269 2389 0.884704 CACTTTGACACCCACCTCCG 60.885 60.000 0.00 0.00 0.00 4.63
2270 2390 1.342672 ACTTTGACACCCACCTCCGT 61.343 55.000 0.00 0.00 0.00 4.69
2274 2394 1.183030 TGACACCCACCTCCGTACAG 61.183 60.000 0.00 0.00 0.00 2.74
2280 2400 1.472728 CCCACCTCCGTACAGTAATGC 60.473 57.143 0.00 0.00 0.00 3.56
2284 2404 0.828022 CTCCGTACAGTAATGCCCCA 59.172 55.000 0.00 0.00 0.00 4.96
2285 2405 1.416401 CTCCGTACAGTAATGCCCCAT 59.584 52.381 0.00 0.00 0.00 4.00
2286 2406 2.631062 CTCCGTACAGTAATGCCCCATA 59.369 50.000 0.00 0.00 0.00 2.74
2287 2407 3.244582 TCCGTACAGTAATGCCCCATAT 58.755 45.455 0.00 0.00 0.00 1.78
2288 2408 3.259876 TCCGTACAGTAATGCCCCATATC 59.740 47.826 0.00 0.00 0.00 1.63
2289 2409 3.260884 CCGTACAGTAATGCCCCATATCT 59.739 47.826 0.00 0.00 0.00 1.98
2290 2410 4.495422 CGTACAGTAATGCCCCATATCTC 58.505 47.826 0.00 0.00 0.00 2.75
2294 2414 4.104086 CAGTAATGCCCCATATCTCCCTA 58.896 47.826 0.00 0.00 0.00 3.53
2295 2415 4.163078 CAGTAATGCCCCATATCTCCCTAG 59.837 50.000 0.00 0.00 0.00 3.02
2296 2416 3.297994 AATGCCCCATATCTCCCTAGT 57.702 47.619 0.00 0.00 0.00 2.57
2302 2422 3.772025 CCCCATATCTCCCTAGTGATGTC 59.228 52.174 0.00 0.00 0.00 3.06
2303 2423 3.772025 CCCATATCTCCCTAGTGATGTCC 59.228 52.174 0.00 0.00 0.00 4.02
2314 2434 4.766970 GATGTCCCTCATCGCCTG 57.233 61.111 0.00 0.00 42.57 4.85
2324 2444 3.419580 ATCGCCTGCCCATCCCAA 61.420 61.111 0.00 0.00 0.00 4.12
2327 2447 3.451894 GCCTGCCCATCCCAAACG 61.452 66.667 0.00 0.00 0.00 3.60
2336 2456 1.973281 ATCCCAAACGCCACAGCAG 60.973 57.895 0.00 0.00 39.83 4.24
2339 2459 2.353839 CAAACGCCACAGCAGCAC 60.354 61.111 0.00 0.00 39.83 4.40
2343 2463 4.671549 CGCCACAGCAGCACGTTG 62.672 66.667 0.00 0.00 39.83 4.10
2359 2479 1.105759 GTTGCCATGCCTCCAGATCC 61.106 60.000 0.00 0.00 0.00 3.36
2363 2483 1.486997 CCATGCCTCCAGATCCCGAT 61.487 60.000 0.00 0.00 0.00 4.18
2367 2487 1.545706 GCCTCCAGATCCCGATACCC 61.546 65.000 0.00 0.00 0.00 3.69
2368 2488 1.251527 CCTCCAGATCCCGATACCCG 61.252 65.000 0.00 0.00 38.18 5.28
2369 2489 1.878656 CTCCAGATCCCGATACCCGC 61.879 65.000 0.00 0.00 36.84 6.13
2370 2490 2.207229 CCAGATCCCGATACCCGCA 61.207 63.158 0.00 0.00 36.84 5.69
2377 2497 2.709475 CGATACCCGCAGCAAAGC 59.291 61.111 0.00 0.00 0.00 3.51
2381 2501 1.315257 ATACCCGCAGCAAAGCCAAG 61.315 55.000 0.00 0.00 0.00 3.61
2388 2508 1.425412 CAGCAAAGCCAAGCAACATC 58.575 50.000 0.00 0.00 0.00 3.06
2392 2512 2.158561 AAAGCCAAGCAACATCGCCC 62.159 55.000 0.00 0.00 0.00 6.13
2397 2519 4.740822 AGCAACATCGCCCCCACC 62.741 66.667 0.00 0.00 0.00 4.61
2399 2521 2.044053 CAACATCGCCCCCACCAT 60.044 61.111 0.00 0.00 0.00 3.55
2403 2525 1.225983 CATCGCCCCCACCATTGTA 59.774 57.895 0.00 0.00 0.00 2.41
2415 2537 4.383770 CCCACCATTGTAGTCGAAGGTTAT 60.384 45.833 0.00 0.00 27.74 1.89
2423 2545 7.989416 TTGTAGTCGAAGGTTATTTCCATTT 57.011 32.000 0.00 0.00 0.00 2.32
2424 2546 7.605410 TGTAGTCGAAGGTTATTTCCATTTC 57.395 36.000 0.00 0.00 0.00 2.17
2425 2547 6.596497 TGTAGTCGAAGGTTATTTCCATTTCC 59.404 38.462 0.00 0.00 0.00 3.13
2430 2552 7.328493 GTCGAAGGTTATTTCCATTTCCTTTTG 59.672 37.037 0.00 0.00 35.76 2.44
2465 2587 8.760735 TCAATTTGAAATGGATGGTTCATATGT 58.239 29.630 1.90 0.00 33.90 2.29
2466 2588 9.037737 CAATTTGAAATGGATGGTTCATATGTC 57.962 33.333 1.90 0.00 33.90 3.06
2471 2593 8.760735 TGAAATGGATGGTTCATATGTCAATTT 58.239 29.630 1.90 4.22 0.00 1.82
2473 2595 6.713762 TGGATGGTTCATATGTCAATTTCC 57.286 37.500 1.90 4.83 0.00 3.13
2476 2598 7.179872 TGGATGGTTCATATGTCAATTTCCAAA 59.820 33.333 1.90 0.00 0.00 3.28
2477 2599 7.492344 GGATGGTTCATATGTCAATTTCCAAAC 59.508 37.037 1.90 0.00 0.00 2.93
2479 2601 6.015856 TGGTTCATATGTCAATTTCCAAACGT 60.016 34.615 1.90 0.00 0.00 3.99
2502 2624 5.458041 AAGTTTATATGCATGCCCACATC 57.542 39.130 16.68 0.52 32.87 3.06
2512 2634 3.322828 GCATGCCCACATCTTAAATGGAT 59.677 43.478 6.36 0.00 35.33 3.41
2527 2649 9.631257 TCTTAAATGGATGATTCATGTGTATGT 57.369 29.630 3.32 0.00 35.73 2.29
2639 2761 9.373603 TGTCGATTATATTGTATTTATTCCCCG 57.626 33.333 0.00 0.00 0.00 5.73
2640 2762 8.333186 GTCGATTATATTGTATTTATTCCCCGC 58.667 37.037 0.00 0.00 0.00 6.13
2641 2763 8.041919 TCGATTATATTGTATTTATTCCCCGCA 58.958 33.333 0.00 0.00 0.00 5.69
2642 2764 8.670135 CGATTATATTGTATTTATTCCCCGCAA 58.330 33.333 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.733773 TCTTCATCCCTAAAGATACTTGACA 57.266 36.000 0.00 0.00 0.00 3.58
3 4 8.646900 AGATCTTCATCCCTAAAGATACTTGAC 58.353 37.037 0.00 0.00 41.20 3.18
4 5 8.789767 AGATCTTCATCCCTAAAGATACTTGA 57.210 34.615 0.00 0.00 41.20 3.02
5 6 7.812191 CGAGATCTTCATCCCTAAAGATACTTG 59.188 40.741 0.00 0.00 41.20 3.16
6 7 7.039363 CCGAGATCTTCATCCCTAAAGATACTT 60.039 40.741 0.00 0.00 41.20 2.24
7 8 6.435904 CCGAGATCTTCATCCCTAAAGATACT 59.564 42.308 0.00 0.00 41.20 2.12
8 9 6.626302 CCGAGATCTTCATCCCTAAAGATAC 58.374 44.000 0.00 0.00 41.20 2.24
9 10 5.186021 GCCGAGATCTTCATCCCTAAAGATA 59.814 44.000 0.00 0.00 41.20 1.98
10 11 4.020662 GCCGAGATCTTCATCCCTAAAGAT 60.021 45.833 0.00 0.00 43.23 2.40
11 12 3.322254 GCCGAGATCTTCATCCCTAAAGA 59.678 47.826 0.00 0.00 36.05 2.52
12 13 3.070159 TGCCGAGATCTTCATCCCTAAAG 59.930 47.826 0.00 0.00 0.00 1.85
13 14 3.038280 TGCCGAGATCTTCATCCCTAAA 58.962 45.455 0.00 0.00 0.00 1.85
14 15 2.677914 TGCCGAGATCTTCATCCCTAA 58.322 47.619 0.00 0.00 0.00 2.69
15 16 2.381752 TGCCGAGATCTTCATCCCTA 57.618 50.000 0.00 0.00 0.00 3.53
16 17 1.415659 CTTGCCGAGATCTTCATCCCT 59.584 52.381 0.00 0.00 0.00 4.20
17 18 1.414181 TCTTGCCGAGATCTTCATCCC 59.586 52.381 0.00 0.00 0.00 3.85
18 19 2.898729 TCTTGCCGAGATCTTCATCC 57.101 50.000 0.00 0.00 0.00 3.51
19 20 5.718146 TCATATCTTGCCGAGATCTTCATC 58.282 41.667 0.00 0.00 44.04 2.92
20 21 5.735285 TCATATCTTGCCGAGATCTTCAT 57.265 39.130 0.00 0.00 44.04 2.57
21 22 5.069648 ACTTCATATCTTGCCGAGATCTTCA 59.930 40.000 0.00 0.00 44.04 3.02
22 23 5.537188 ACTTCATATCTTGCCGAGATCTTC 58.463 41.667 0.00 0.00 44.04 2.87
23 24 5.543507 ACTTCATATCTTGCCGAGATCTT 57.456 39.130 0.00 0.00 44.04 2.40
24 25 5.304101 AGAACTTCATATCTTGCCGAGATCT 59.696 40.000 0.00 0.00 44.04 2.75
25 26 5.537188 AGAACTTCATATCTTGCCGAGATC 58.463 41.667 0.00 0.00 44.04 2.75
26 27 5.543507 AGAACTTCATATCTTGCCGAGAT 57.456 39.130 0.00 0.00 46.74 2.75
27 28 5.111989 CAAGAACTTCATATCTTGCCGAGA 58.888 41.667 2.92 0.00 44.12 4.04
28 29 5.401033 CAAGAACTTCATATCTTGCCGAG 57.599 43.478 2.92 0.00 44.12 4.63
61 62 7.342769 ACCAAAAAGAAGTAGATCGGTTTTT 57.657 32.000 0.00 0.00 0.00 1.94
62 63 6.954487 ACCAAAAAGAAGTAGATCGGTTTT 57.046 33.333 0.00 0.00 0.00 2.43
63 64 8.631480 AATACCAAAAAGAAGTAGATCGGTTT 57.369 30.769 0.00 0.00 0.00 3.27
64 65 8.631480 AAATACCAAAAAGAAGTAGATCGGTT 57.369 30.769 0.00 0.00 0.00 4.44
65 66 8.631480 AAAATACCAAAAAGAAGTAGATCGGT 57.369 30.769 0.00 0.00 0.00 4.69
88 89 9.550406 TCGAGGAACAAAAGAATTTAGTCTAAA 57.450 29.630 7.49 7.49 37.28 1.85
89 90 9.720769 ATCGAGGAACAAAAGAATTTAGTCTAA 57.279 29.630 0.00 0.00 37.28 2.10
91 92 9.152595 GTATCGAGGAACAAAAGAATTTAGTCT 57.847 33.333 0.00 0.00 37.28 3.24
92 93 9.152595 AGTATCGAGGAACAAAAGAATTTAGTC 57.847 33.333 0.00 0.00 37.28 2.59
93 94 9.152595 GAGTATCGAGGAACAAAAGAATTTAGT 57.847 33.333 0.00 0.00 37.28 2.24
94 95 9.151471 TGAGTATCGAGGAACAAAAGAATTTAG 57.849 33.333 0.00 0.00 35.24 1.85
95 96 9.496873 TTGAGTATCGAGGAACAAAAGAATTTA 57.503 29.630 0.00 0.00 35.24 1.40
96 97 7.979444 TGAGTATCGAGGAACAAAAGAATTT 57.021 32.000 0.00 0.00 37.90 1.82
97 98 7.979444 TTGAGTATCGAGGAACAAAAGAATT 57.021 32.000 0.00 0.00 38.61 2.17
98 99 7.824289 TGATTGAGTATCGAGGAACAAAAGAAT 59.176 33.333 0.00 0.00 38.61 2.40
99 100 7.158697 TGATTGAGTATCGAGGAACAAAAGAA 58.841 34.615 0.00 0.00 38.61 2.52
100 101 6.697395 TGATTGAGTATCGAGGAACAAAAGA 58.303 36.000 0.00 0.00 38.61 2.52
101 102 6.968131 TGATTGAGTATCGAGGAACAAAAG 57.032 37.500 0.00 0.00 38.61 2.27
102 103 7.308348 GGTTTGATTGAGTATCGAGGAACAAAA 60.308 37.037 0.00 0.00 38.61 2.44
103 104 6.148811 GGTTTGATTGAGTATCGAGGAACAAA 59.851 38.462 0.00 0.00 38.61 2.83
104 105 5.642063 GGTTTGATTGAGTATCGAGGAACAA 59.358 40.000 0.00 0.00 38.61 2.83
105 106 5.175859 GGTTTGATTGAGTATCGAGGAACA 58.824 41.667 0.00 0.00 38.61 3.18
106 107 4.571176 GGGTTTGATTGAGTATCGAGGAAC 59.429 45.833 0.00 0.00 38.61 3.62
107 108 4.469945 AGGGTTTGATTGAGTATCGAGGAA 59.530 41.667 0.00 0.00 38.61 3.36
108 109 4.030913 AGGGTTTGATTGAGTATCGAGGA 58.969 43.478 0.00 0.00 38.61 3.71
109 110 4.100189 AGAGGGTTTGATTGAGTATCGAGG 59.900 45.833 0.00 0.00 38.61 4.63
110 111 5.269505 AGAGGGTTTGATTGAGTATCGAG 57.730 43.478 0.00 0.00 38.61 4.04
111 112 5.677319 AAGAGGGTTTGATTGAGTATCGA 57.323 39.130 0.00 0.00 38.61 3.59
112 113 6.743575 AAAAGAGGGTTTGATTGAGTATCG 57.256 37.500 0.00 0.00 38.61 2.92
116 117 8.977412 TCTTTTAAAAAGAGGGTTTGATTGAGT 58.023 29.630 1.66 0.00 0.00 3.41
117 118 9.987272 ATCTTTTAAAAAGAGGGTTTGATTGAG 57.013 29.630 1.66 0.00 0.00 3.02
118 119 9.762933 CATCTTTTAAAAAGAGGGTTTGATTGA 57.237 29.630 1.66 0.00 0.00 2.57
119 120 8.992073 CCATCTTTTAAAAAGAGGGTTTGATTG 58.008 33.333 4.11 2.40 41.77 2.67
120 121 8.933653 TCCATCTTTTAAAAAGAGGGTTTGATT 58.066 29.630 20.45 0.00 45.56 2.57
121 122 8.491045 TCCATCTTTTAAAAAGAGGGTTTGAT 57.509 30.769 20.45 8.44 45.56 2.57
122 123 7.906199 TCCATCTTTTAAAAAGAGGGTTTGA 57.094 32.000 20.45 6.94 45.56 2.69
123 124 9.208022 GATTCCATCTTTTAAAAAGAGGGTTTG 57.792 33.333 20.45 9.19 45.56 2.93
124 125 9.159254 AGATTCCATCTTTTAAAAAGAGGGTTT 57.841 29.630 20.45 13.81 45.56 3.27
125 126 8.727100 AGATTCCATCTTTTAAAAAGAGGGTT 57.273 30.769 20.45 14.03 45.56 4.11
145 146 1.068434 CGAGAGCCCAGAGGAAGATTC 59.932 57.143 0.00 0.00 33.47 2.52
146 147 1.118838 CGAGAGCCCAGAGGAAGATT 58.881 55.000 0.00 0.00 33.47 2.40
147 148 0.032615 ACGAGAGCCCAGAGGAAGAT 60.033 55.000 0.00 0.00 33.47 2.40
148 149 0.624254 TACGAGAGCCCAGAGGAAGA 59.376 55.000 0.00 0.00 33.47 2.87
149 150 1.698506 ATACGAGAGCCCAGAGGAAG 58.301 55.000 0.00 0.00 33.47 3.46
150 151 2.032620 GAATACGAGAGCCCAGAGGAA 58.967 52.381 0.00 0.00 33.47 3.36
151 152 1.693627 GAATACGAGAGCCCAGAGGA 58.306 55.000 0.00 0.00 33.47 3.71
152 153 0.312416 CGAATACGAGAGCCCAGAGG 59.688 60.000 0.00 0.00 42.66 3.69
153 154 1.002251 GACGAATACGAGAGCCCAGAG 60.002 57.143 0.00 0.00 42.66 3.35
154 155 1.022735 GACGAATACGAGAGCCCAGA 58.977 55.000 0.00 0.00 42.66 3.86
155 156 0.030908 GGACGAATACGAGAGCCCAG 59.969 60.000 0.00 0.00 42.66 4.45
156 157 0.395311 AGGACGAATACGAGAGCCCA 60.395 55.000 0.00 0.00 42.66 5.36
157 158 0.311477 GAGGACGAATACGAGAGCCC 59.689 60.000 0.00 0.00 42.66 5.19
158 159 1.002251 CAGAGGACGAATACGAGAGCC 60.002 57.143 0.00 0.00 42.66 4.70
159 160 1.941294 TCAGAGGACGAATACGAGAGC 59.059 52.381 0.00 0.00 42.66 4.09
160 161 4.513692 AGATTCAGAGGACGAATACGAGAG 59.486 45.833 0.00 0.00 42.66 3.20
161 162 4.452825 AGATTCAGAGGACGAATACGAGA 58.547 43.478 0.00 0.00 42.66 4.04
162 163 4.822036 AGATTCAGAGGACGAATACGAG 57.178 45.455 0.00 0.00 42.66 4.18
163 164 4.882427 AGAAGATTCAGAGGACGAATACGA 59.118 41.667 0.00 0.00 42.66 3.43
164 165 5.176407 AGAAGATTCAGAGGACGAATACG 57.824 43.478 0.00 0.00 45.75 3.06
165 166 6.695278 CAGAAGAAGATTCAGAGGACGAATAC 59.305 42.308 0.00 0.00 33.26 1.89
166 167 6.603599 TCAGAAGAAGATTCAGAGGACGAATA 59.396 38.462 0.00 0.00 33.26 1.75
167 168 5.420421 TCAGAAGAAGATTCAGAGGACGAAT 59.580 40.000 0.00 0.00 35.80 3.34
168 169 4.767409 TCAGAAGAAGATTCAGAGGACGAA 59.233 41.667 0.00 0.00 0.00 3.85
169 170 4.336280 TCAGAAGAAGATTCAGAGGACGA 58.664 43.478 0.00 0.00 0.00 4.20
170 171 4.157656 ACTCAGAAGAAGATTCAGAGGACG 59.842 45.833 12.67 0.00 36.68 4.79
171 172 5.418840 AGACTCAGAAGAAGATTCAGAGGAC 59.581 44.000 12.67 7.65 36.68 3.85
172 173 5.579047 AGACTCAGAAGAAGATTCAGAGGA 58.421 41.667 12.67 0.00 36.68 3.71
173 174 5.920193 AGACTCAGAAGAAGATTCAGAGG 57.080 43.478 12.67 0.00 36.68 3.69
174 175 6.153340 AGGAAGACTCAGAAGAAGATTCAGAG 59.847 42.308 8.06 8.06 37.85 3.35
175 176 6.015918 AGGAAGACTCAGAAGAAGATTCAGA 58.984 40.000 0.00 0.00 0.00 3.27
176 177 6.284891 AGGAAGACTCAGAAGAAGATTCAG 57.715 41.667 0.00 0.00 0.00 3.02
177 178 6.279513 GAGGAAGACTCAGAAGAAGATTCA 57.720 41.667 0.00 0.00 45.85 2.57
193 194 9.901172 GGAAAAATATGGTACTTTAGAGGAAGA 57.099 33.333 0.00 0.00 0.00 2.87
194 195 9.907229 AGGAAAAATATGGTACTTTAGAGGAAG 57.093 33.333 0.00 0.00 0.00 3.46
195 196 9.901172 GAGGAAAAATATGGTACTTTAGAGGAA 57.099 33.333 0.00 0.00 0.00 3.36
196 197 9.280456 AGAGGAAAAATATGGTACTTTAGAGGA 57.720 33.333 0.00 0.00 0.00 3.71
197 198 9.331282 CAGAGGAAAAATATGGTACTTTAGAGG 57.669 37.037 0.00 0.00 0.00 3.69
198 199 8.831550 GCAGAGGAAAAATATGGTACTTTAGAG 58.168 37.037 0.00 0.00 0.00 2.43
199 200 7.494625 CGCAGAGGAAAAATATGGTACTTTAGA 59.505 37.037 0.00 0.00 0.00 2.10
200 201 7.630924 CGCAGAGGAAAAATATGGTACTTTAG 58.369 38.462 0.00 0.00 0.00 1.85
201 202 6.037830 GCGCAGAGGAAAAATATGGTACTTTA 59.962 38.462 0.30 0.00 0.00 1.85
202 203 5.163652 GCGCAGAGGAAAAATATGGTACTTT 60.164 40.000 0.30 0.00 0.00 2.66
203 204 4.335594 GCGCAGAGGAAAAATATGGTACTT 59.664 41.667 0.30 0.00 0.00 2.24
204 205 3.877508 GCGCAGAGGAAAAATATGGTACT 59.122 43.478 0.30 0.00 0.00 2.73
205 206 3.877508 AGCGCAGAGGAAAAATATGGTAC 59.122 43.478 11.47 0.00 0.00 3.34
206 207 4.150897 AGCGCAGAGGAAAAATATGGTA 57.849 40.909 11.47 0.00 0.00 3.25
207 208 3.004752 AGCGCAGAGGAAAAATATGGT 57.995 42.857 11.47 0.00 0.00 3.55
208 209 4.354587 GAAAGCGCAGAGGAAAAATATGG 58.645 43.478 11.47 0.00 0.00 2.74
209 210 4.354587 GGAAAGCGCAGAGGAAAAATATG 58.645 43.478 11.47 0.00 0.00 1.78
210 211 3.381590 GGGAAAGCGCAGAGGAAAAATAT 59.618 43.478 11.47 0.00 0.00 1.28
211 212 2.752903 GGGAAAGCGCAGAGGAAAAATA 59.247 45.455 11.47 0.00 0.00 1.40
212 213 1.546029 GGGAAAGCGCAGAGGAAAAAT 59.454 47.619 11.47 0.00 0.00 1.82
213 214 0.958822 GGGAAAGCGCAGAGGAAAAA 59.041 50.000 11.47 0.00 0.00 1.94
214 215 0.893727 GGGGAAAGCGCAGAGGAAAA 60.894 55.000 11.47 0.00 0.00 2.29
215 216 1.303317 GGGGAAAGCGCAGAGGAAA 60.303 57.895 11.47 0.00 0.00 3.13
216 217 2.224159 AGGGGAAAGCGCAGAGGAA 61.224 57.895 11.47 0.00 0.00 3.36
217 218 2.607750 AGGGGAAAGCGCAGAGGA 60.608 61.111 11.47 0.00 0.00 3.71
218 219 2.437359 CAGGGGAAAGCGCAGAGG 60.437 66.667 11.47 0.00 0.00 3.69
219 220 2.437359 CCAGGGGAAAGCGCAGAG 60.437 66.667 11.47 0.00 0.00 3.35
220 221 4.033776 CCCAGGGGAAAGCGCAGA 62.034 66.667 11.47 0.00 37.50 4.26
226 227 1.936767 TATGGCAGCCCAGGGGAAAG 61.937 60.000 9.64 0.00 46.24 2.62
227 228 1.295915 ATATGGCAGCCCAGGGGAAA 61.296 55.000 9.64 0.00 46.24 3.13
228 229 1.295915 AATATGGCAGCCCAGGGGAA 61.296 55.000 9.64 0.00 46.24 3.97
229 230 1.701024 AATATGGCAGCCCAGGGGA 60.701 57.895 9.64 0.00 46.24 4.81
230 231 1.228675 GAATATGGCAGCCCAGGGG 60.229 63.158 9.64 3.48 46.24 4.79
231 232 1.601759 CGAATATGGCAGCCCAGGG 60.602 63.158 9.64 0.00 46.24 4.45
232 233 0.396435 TACGAATATGGCAGCCCAGG 59.604 55.000 9.64 0.00 46.24 4.45
233 234 1.202639 TGTACGAATATGGCAGCCCAG 60.203 52.381 9.64 0.00 46.24 4.45
235 236 1.961793 TTGTACGAATATGGCAGCCC 58.038 50.000 9.64 0.00 0.00 5.19
236 237 4.364415 TTTTTGTACGAATATGGCAGCC 57.636 40.909 3.66 3.66 0.00 4.85
237 238 6.725246 ACTATTTTTGTACGAATATGGCAGC 58.275 36.000 8.57 0.00 0.00 5.25
238 239 8.394877 TGAACTATTTTTGTACGAATATGGCAG 58.605 33.333 8.57 2.37 0.00 4.85
239 240 8.270080 TGAACTATTTTTGTACGAATATGGCA 57.730 30.769 8.57 0.00 0.00 4.92
240 241 9.730420 AATGAACTATTTTTGTACGAATATGGC 57.270 29.630 8.57 0.00 0.00 4.40
321 322 4.394610 GCAATTCCCCATTTTTAAACGCAT 59.605 37.500 0.00 0.00 0.00 4.73
324 325 5.698545 TCTTGCAATTCCCCATTTTTAAACG 59.301 36.000 0.00 0.00 0.00 3.60
325 326 7.503521 TTCTTGCAATTCCCCATTTTTAAAC 57.496 32.000 0.00 0.00 0.00 2.01
380 381 3.827302 AGCTTCTAGAAGTCTTCAACCGA 59.173 43.478 28.72 2.82 40.45 4.69
406 407 4.329462 TTTTAGGCTTGCATCGGTTTTT 57.671 36.364 0.00 0.00 0.00 1.94
407 408 4.329462 TTTTTAGGCTTGCATCGGTTTT 57.671 36.364 0.00 0.00 0.00 2.43
442 443 5.350365 TCAGTTATTCCGGATGAAGAAAACG 59.650 40.000 4.15 0.59 36.04 3.60
443 444 6.543736 GTCAGTTATTCCGGATGAAGAAAAC 58.456 40.000 4.15 2.63 36.04 2.43
444 445 5.350365 CGTCAGTTATTCCGGATGAAGAAAA 59.650 40.000 4.15 0.00 36.04 2.29
447 448 3.737047 GCGTCAGTTATTCCGGATGAAGA 60.737 47.826 18.33 5.22 36.14 2.87
450 451 1.202486 GGCGTCAGTTATTCCGGATGA 60.202 52.381 4.15 1.94 0.00 2.92
452 453 0.106149 GGGCGTCAGTTATTCCGGAT 59.894 55.000 4.15 0.00 0.00 4.18
459 460 1.405872 TCCGTATGGGCGTCAGTTAT 58.594 50.000 0.00 0.00 35.24 1.89
462 464 1.441729 CATCCGTATGGGCGTCAGT 59.558 57.895 0.00 0.00 35.24 3.41
463 465 1.956170 GCATCCGTATGGGCGTCAG 60.956 63.158 0.00 0.00 35.24 3.51
468 470 0.391661 ATCGATGCATCCGTATGGGC 60.392 55.000 20.87 0.00 35.24 5.36
470 472 2.662006 AGATCGATGCATCCGTATGG 57.338 50.000 20.87 5.92 33.38 2.74
471 473 5.586339 AGATTAGATCGATGCATCCGTATG 58.414 41.667 20.87 6.65 36.09 2.39
473 475 6.150474 TGTTAGATTAGATCGATGCATCCGTA 59.850 38.462 20.87 7.28 0.00 4.02
476 478 6.393990 AGTGTTAGATTAGATCGATGCATCC 58.606 40.000 20.87 7.21 0.00 3.51
496 498 8.500773 CGTTTGTACCTTGACATATTTTAGTGT 58.499 33.333 0.00 0.00 0.00 3.55
500 502 8.604640 TGACGTTTGTACCTTGACATATTTTA 57.395 30.769 0.00 0.00 0.00 1.52
505 507 6.224584 TCATTGACGTTTGTACCTTGACATA 58.775 36.000 0.00 0.00 0.00 2.29
511 513 5.334569 CGGAATTCATTGACGTTTGTACCTT 60.335 40.000 7.93 0.00 0.00 3.50
515 517 4.316645 TCCGGAATTCATTGACGTTTGTA 58.683 39.130 0.00 0.00 0.00 2.41
519 521 3.053831 ACTCCGGAATTCATTGACGTT 57.946 42.857 5.23 0.00 0.00 3.99
536 546 1.518572 CACGCCGGACCATGTACTC 60.519 63.158 5.05 0.00 0.00 2.59
576 586 0.390735 CACCTTTAGCGCCGGTTAGT 60.391 55.000 2.29 0.00 0.00 2.24
728 738 1.450312 CTGACGCTAAGCCCCAAGG 60.450 63.158 0.00 0.00 0.00 3.61
735 745 2.931512 AAGAGAGACTGACGCTAAGC 57.068 50.000 0.00 0.00 0.00 3.09
737 747 6.807230 GTCAAATTAAGAGAGACTGACGCTAA 59.193 38.462 0.00 0.00 0.00 3.09
738 748 6.323266 GTCAAATTAAGAGAGACTGACGCTA 58.677 40.000 0.00 0.00 0.00 4.26
739 749 5.164954 GTCAAATTAAGAGAGACTGACGCT 58.835 41.667 0.00 0.00 0.00 5.07
740 750 4.327627 GGTCAAATTAAGAGAGACTGACGC 59.672 45.833 0.00 0.00 34.01 5.19
741 751 5.715070 AGGTCAAATTAAGAGAGACTGACG 58.285 41.667 0.00 0.00 34.01 4.35
760 770 5.195940 TGGATCATTCAAATGAAGGAGGTC 58.804 41.667 14.73 9.02 46.08 3.85
762 772 4.583489 CCTGGATCATTCAAATGAAGGAGG 59.417 45.833 14.73 11.79 46.08 4.30
770 780 1.696063 CCGGCCTGGATCATTCAAAT 58.304 50.000 7.77 0.00 42.00 2.32
828 839 1.807165 CATCTCCACCACGAGCACG 60.807 63.158 0.76 0.76 45.75 5.34
829 840 1.448540 CCATCTCCACCACGAGCAC 60.449 63.158 0.00 0.00 0.00 4.40
830 841 1.191489 TTCCATCTCCACCACGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
845 856 1.595929 GACGTGGCCTTCGTTTCCA 60.596 57.895 22.60 0.00 41.64 3.53
870 881 2.413310 TTATTCCTTTGGAGTCCGCC 57.587 50.000 4.30 0.00 31.21 6.13
893 904 7.478322 ACCTTTCGTTCCTTTTTAGAAGAAAC 58.522 34.615 0.00 0.00 0.00 2.78
907 918 5.232838 CACCACGTATTATACCTTTCGTTCC 59.767 44.000 0.00 0.00 0.00 3.62
911 922 4.053295 CCCACCACGTATTATACCTTTCG 58.947 47.826 0.00 0.00 0.00 3.46
963 990 8.809478 CCTAGCTAGTTTCGATTTCTAGTTTTC 58.191 37.037 19.31 4.73 35.14 2.29
1186 1236 5.994054 CAGGGTGAAGAATATGAACGATGAT 59.006 40.000 0.00 0.00 0.00 2.45
1187 1237 5.359756 CAGGGTGAAGAATATGAACGATGA 58.640 41.667 0.00 0.00 0.00 2.92
1188 1238 4.024556 GCAGGGTGAAGAATATGAACGATG 60.025 45.833 0.00 0.00 0.00 3.84
1189 1239 4.130118 GCAGGGTGAAGAATATGAACGAT 58.870 43.478 0.00 0.00 0.00 3.73
1190 1240 3.055458 TGCAGGGTGAAGAATATGAACGA 60.055 43.478 0.00 0.00 0.00 3.85
1191 1241 3.270027 TGCAGGGTGAAGAATATGAACG 58.730 45.455 0.00 0.00 0.00 3.95
1192 1242 4.498682 GCATGCAGGGTGAAGAATATGAAC 60.499 45.833 14.21 0.00 0.00 3.18
1193 1243 3.633525 GCATGCAGGGTGAAGAATATGAA 59.366 43.478 14.21 0.00 0.00 2.57
1194 1244 3.216800 GCATGCAGGGTGAAGAATATGA 58.783 45.455 14.21 0.00 0.00 2.15
1195 1245 2.953648 TGCATGCAGGGTGAAGAATATG 59.046 45.455 18.46 0.00 0.00 1.78
1196 1246 3.301794 TGCATGCAGGGTGAAGAATAT 57.698 42.857 18.46 0.00 0.00 1.28
1211 1261 2.202878 GGCCTGCTTGCATGCATG 60.203 61.111 25.50 24.36 42.48 4.06
1212 1262 2.682136 TGGCCTGCTTGCATGCAT 60.682 55.556 25.50 0.00 42.48 3.96
1315 1369 3.071479 GAGATTGTACTCGGTTGCCAAA 58.929 45.455 0.00 0.00 0.00 3.28
1340 1394 4.056125 CTCTCTGCCGACACCGCA 62.056 66.667 0.00 0.00 0.00 5.69
1352 1406 2.492012 CAGCAGCTGTTTGTTCTCTCT 58.508 47.619 16.64 0.00 0.00 3.10
1458 1517 6.818142 AGAAACGACATGACAATGACATGATA 59.182 34.615 26.87 0.00 45.22 2.15
1465 1524 4.392754 CCATGAGAAACGACATGACAATGA 59.607 41.667 0.00 0.00 44.28 2.57
1466 1525 4.392754 TCCATGAGAAACGACATGACAATG 59.607 41.667 0.00 0.00 44.28 2.82
1467 1526 4.578871 TCCATGAGAAACGACATGACAAT 58.421 39.130 0.00 0.00 44.28 2.71
1631 1693 1.659794 CAGCCCGTTCCTTGGTTTG 59.340 57.895 0.00 0.00 0.00 2.93
1655 1717 5.605564 TCATGTAACACCAATCGTTGAAG 57.394 39.130 0.00 0.00 0.00 3.02
1659 1721 5.759506 TGTTTCATGTAACACCAATCGTT 57.240 34.783 13.25 0.00 33.31 3.85
1695 1785 1.227292 GTTGAGGTAGCTAGCGGCC 60.227 63.158 16.82 18.86 43.05 6.13
1897 2017 4.656112 AGTCAAGGGGATAATTGAGACGAT 59.344 41.667 0.00 0.00 36.16 3.73
1898 2018 4.030913 AGTCAAGGGGATAATTGAGACGA 58.969 43.478 0.00 0.00 36.16 4.20
1899 2019 4.408182 AGTCAAGGGGATAATTGAGACG 57.592 45.455 0.00 0.00 36.16 4.18
1900 2020 7.829706 AGTAAAAGTCAAGGGGATAATTGAGAC 59.170 37.037 0.00 0.00 36.16 3.36
1902 2022 9.331282 CTAGTAAAAGTCAAGGGGATAATTGAG 57.669 37.037 0.00 0.00 36.16 3.02
1903 2023 9.053472 TCTAGTAAAAGTCAAGGGGATAATTGA 57.947 33.333 0.00 0.00 33.16 2.57
1904 2024 9.681062 TTCTAGTAAAAGTCAAGGGGATAATTG 57.319 33.333 0.00 0.00 0.00 2.32
1906 2026 9.907229 CTTTCTAGTAAAAGTCAAGGGGATAAT 57.093 33.333 0.00 0.00 32.67 1.28
1908 2028 8.445361 ACTTTCTAGTAAAAGTCAAGGGGATA 57.555 34.615 4.20 0.00 44.18 2.59
1909 2029 7.331089 ACTTTCTAGTAAAAGTCAAGGGGAT 57.669 36.000 4.20 0.00 44.18 3.85
1910 2030 6.758806 ACTTTCTAGTAAAAGTCAAGGGGA 57.241 37.500 4.20 0.00 44.18 4.81
1911 2031 8.101419 ACATACTTTCTAGTAAAAGTCAAGGGG 58.899 37.037 11.66 2.38 44.18 4.79
1912 2032 9.503399 AACATACTTTCTAGTAAAAGTCAAGGG 57.497 33.333 11.66 3.66 44.18 3.95
1947 2067 9.811995 AAAAGTTATCAACATGATGAATGGATG 57.188 29.630 9.94 0.00 40.94 3.51
1955 2075 6.153340 AGGGACCAAAAGTTATCAACATGATG 59.847 38.462 0.00 0.00 37.70 3.07
1958 2078 5.982890 AGGGACCAAAAGTTATCAACATG 57.017 39.130 0.00 0.00 0.00 3.21
1964 2084 3.431415 AGCCAAGGGACCAAAAGTTATC 58.569 45.455 0.00 0.00 0.00 1.75
1965 2085 3.542969 AGCCAAGGGACCAAAAGTTAT 57.457 42.857 0.00 0.00 0.00 1.89
1966 2086 4.043561 TGATAGCCAAGGGACCAAAAGTTA 59.956 41.667 0.00 0.00 0.00 2.24
1967 2087 3.181423 TGATAGCCAAGGGACCAAAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
1968 2088 2.378547 TGATAGCCAAGGGACCAAAAGT 59.621 45.455 0.00 0.00 0.00 2.66
1969 2089 3.085952 TGATAGCCAAGGGACCAAAAG 57.914 47.619 0.00 0.00 0.00 2.27
1970 2090 3.534357 TTGATAGCCAAGGGACCAAAA 57.466 42.857 0.00 0.00 0.00 2.44
1971 2091 3.161866 GTTTGATAGCCAAGGGACCAAA 58.838 45.455 0.00 0.00 35.94 3.28
1972 2092 2.378547 AGTTTGATAGCCAAGGGACCAA 59.621 45.455 0.00 0.00 35.94 3.67
1981 2101 4.521256 GGGTTTTGTACAGTTTGATAGCCA 59.479 41.667 0.00 0.00 0.00 4.75
1983 2103 5.699097 TGGGTTTTGTACAGTTTGATAGC 57.301 39.130 0.00 0.00 0.00 2.97
1988 2108 7.091443 TGTTAGTTTGGGTTTTGTACAGTTTG 58.909 34.615 0.00 0.00 0.00 2.93
2004 2124 8.536407 CCAAAAGTAACCGATTTTGTTAGTTTG 58.464 33.333 13.63 11.56 44.77 2.93
2005 2125 8.252417 ACCAAAAGTAACCGATTTTGTTAGTTT 58.748 29.630 9.15 9.15 46.23 2.66
2016 2136 4.517832 GGAAAGTGACCAAAAGTAACCGAT 59.482 41.667 0.00 0.00 28.46 4.18
2017 2137 3.878699 GGAAAGTGACCAAAAGTAACCGA 59.121 43.478 0.00 0.00 28.46 4.69
2018 2138 3.004002 GGGAAAGTGACCAAAAGTAACCG 59.996 47.826 0.00 0.00 28.46 4.44
2019 2139 3.004002 CGGGAAAGTGACCAAAAGTAACC 59.996 47.826 0.00 0.00 28.46 2.85
2020 2140 3.878699 TCGGGAAAGTGACCAAAAGTAAC 59.121 43.478 0.00 0.00 0.00 2.50
2021 2141 3.878699 GTCGGGAAAGTGACCAAAAGTAA 59.121 43.478 0.00 0.00 0.00 2.24
2022 2142 3.135167 AGTCGGGAAAGTGACCAAAAGTA 59.865 43.478 0.00 0.00 35.71 2.24
2024 2144 2.572290 AGTCGGGAAAGTGACCAAAAG 58.428 47.619 0.00 0.00 35.71 2.27
2025 2145 2.721425 AGTCGGGAAAGTGACCAAAA 57.279 45.000 0.00 0.00 35.71 2.44
2026 2146 2.038033 CCTAGTCGGGAAAGTGACCAAA 59.962 50.000 0.00 0.00 35.71 3.28
2029 2149 1.204231 GACCTAGTCGGGAAAGTGACC 59.796 57.143 0.00 0.00 35.71 4.02
2030 2150 1.204231 GGACCTAGTCGGGAAAGTGAC 59.796 57.143 0.00 0.00 36.97 3.67
2031 2151 1.203087 TGGACCTAGTCGGGAAAGTGA 60.203 52.381 0.00 0.00 36.97 3.41
2032 2152 1.067071 GTGGACCTAGTCGGGAAAGTG 60.067 57.143 0.00 0.00 36.97 3.16
2033 2153 1.203149 AGTGGACCTAGTCGGGAAAGT 60.203 52.381 0.00 0.00 36.97 2.66
2034 2154 1.558233 AGTGGACCTAGTCGGGAAAG 58.442 55.000 0.00 0.00 36.97 2.62
2035 2155 2.905415 TAGTGGACCTAGTCGGGAAA 57.095 50.000 0.00 0.00 36.97 3.13
2036 2156 2.024655 ACATAGTGGACCTAGTCGGGAA 60.025 50.000 0.00 0.00 36.97 3.97
2037 2157 1.567649 ACATAGTGGACCTAGTCGGGA 59.432 52.381 0.00 0.00 36.97 5.14
2038 2158 2.068834 ACATAGTGGACCTAGTCGGG 57.931 55.000 0.00 0.00 36.97 5.14
2039 2159 3.147629 CCTACATAGTGGACCTAGTCGG 58.852 54.545 0.00 0.00 39.35 4.79
2040 2160 3.814283 GACCTACATAGTGGACCTAGTCG 59.186 52.174 0.00 0.00 32.65 4.18
2041 2161 4.789807 TGACCTACATAGTGGACCTAGTC 58.210 47.826 0.00 0.00 0.00 2.59
2042 2162 4.386536 CCTGACCTACATAGTGGACCTAGT 60.387 50.000 0.00 0.00 0.00 2.57
2043 2163 4.145807 CCTGACCTACATAGTGGACCTAG 58.854 52.174 0.00 0.00 0.00 3.02
2044 2164 3.530564 ACCTGACCTACATAGTGGACCTA 59.469 47.826 0.00 0.00 0.00 3.08
2045 2165 2.315155 ACCTGACCTACATAGTGGACCT 59.685 50.000 0.00 0.00 0.00 3.85
2046 2166 2.431057 CACCTGACCTACATAGTGGACC 59.569 54.545 0.00 0.00 32.53 4.46
2047 2167 3.362706 TCACCTGACCTACATAGTGGAC 58.637 50.000 0.00 0.00 35.07 4.02
2048 2168 3.750501 TCACCTGACCTACATAGTGGA 57.249 47.619 0.00 0.00 35.07 4.02
2049 2169 3.004839 CGATCACCTGACCTACATAGTGG 59.995 52.174 0.00 0.00 35.07 4.00
2050 2170 3.883489 TCGATCACCTGACCTACATAGTG 59.117 47.826 0.00 0.00 35.41 2.74
2051 2171 4.166246 TCGATCACCTGACCTACATAGT 57.834 45.455 0.00 0.00 0.00 2.12
2052 2172 4.822350 TCTTCGATCACCTGACCTACATAG 59.178 45.833 0.00 0.00 0.00 2.23
2053 2173 4.579340 GTCTTCGATCACCTGACCTACATA 59.421 45.833 0.00 0.00 0.00 2.29
2054 2174 3.381908 GTCTTCGATCACCTGACCTACAT 59.618 47.826 0.00 0.00 0.00 2.29
2055 2175 2.753452 GTCTTCGATCACCTGACCTACA 59.247 50.000 0.00 0.00 0.00 2.74
2056 2176 3.018149 AGTCTTCGATCACCTGACCTAC 58.982 50.000 0.00 0.00 0.00 3.18
2057 2177 3.017442 CAGTCTTCGATCACCTGACCTA 58.983 50.000 0.00 0.00 0.00 3.08
2058 2178 1.821753 CAGTCTTCGATCACCTGACCT 59.178 52.381 0.00 0.00 0.00 3.85
2059 2179 1.819288 TCAGTCTTCGATCACCTGACC 59.181 52.381 0.00 0.00 0.00 4.02
2060 2180 2.159310 CCTCAGTCTTCGATCACCTGAC 60.159 54.545 0.00 0.00 0.00 3.51
2061 2181 2.095461 CCTCAGTCTTCGATCACCTGA 58.905 52.381 0.00 0.00 0.00 3.86
2062 2182 1.135915 CCCTCAGTCTTCGATCACCTG 59.864 57.143 0.00 0.00 0.00 4.00
2063 2183 1.272760 ACCCTCAGTCTTCGATCACCT 60.273 52.381 0.00 0.00 0.00 4.00
2064 2184 1.187087 ACCCTCAGTCTTCGATCACC 58.813 55.000 0.00 0.00 0.00 4.02
2065 2185 2.611518 CAACCCTCAGTCTTCGATCAC 58.388 52.381 0.00 0.00 0.00 3.06
2066 2186 1.550524 CCAACCCTCAGTCTTCGATCA 59.449 52.381 0.00 0.00 0.00 2.92
2067 2187 1.134670 CCCAACCCTCAGTCTTCGATC 60.135 57.143 0.00 0.00 0.00 3.69
2068 2188 0.905357 CCCAACCCTCAGTCTTCGAT 59.095 55.000 0.00 0.00 0.00 3.59
2069 2189 0.471211 ACCCAACCCTCAGTCTTCGA 60.471 55.000 0.00 0.00 0.00 3.71
2070 2190 0.320771 CACCCAACCCTCAGTCTTCG 60.321 60.000 0.00 0.00 0.00 3.79
2071 2191 1.056660 TCACCCAACCCTCAGTCTTC 58.943 55.000 0.00 0.00 0.00 2.87
2072 2192 1.630878 GATCACCCAACCCTCAGTCTT 59.369 52.381 0.00 0.00 0.00 3.01
2073 2193 1.280457 GATCACCCAACCCTCAGTCT 58.720 55.000 0.00 0.00 0.00 3.24
2074 2194 0.984230 TGATCACCCAACCCTCAGTC 59.016 55.000 0.00 0.00 0.00 3.51
2075 2195 0.693049 GTGATCACCCAACCCTCAGT 59.307 55.000 15.31 0.00 0.00 3.41
2076 2196 0.987294 AGTGATCACCCAACCCTCAG 59.013 55.000 22.21 0.00 0.00 3.35
2077 2197 1.351017 GAAGTGATCACCCAACCCTCA 59.649 52.381 22.21 0.00 0.00 3.86
2078 2198 1.340114 GGAAGTGATCACCCAACCCTC 60.340 57.143 22.21 7.57 0.00 4.30
2079 2199 0.698818 GGAAGTGATCACCCAACCCT 59.301 55.000 22.21 0.00 0.00 4.34
2080 2200 0.404040 TGGAAGTGATCACCCAACCC 59.596 55.000 22.21 15.37 0.00 4.11
2081 2201 2.286365 TTGGAAGTGATCACCCAACC 57.714 50.000 24.49 20.23 34.10 3.77
2082 2202 3.383185 TGTTTTGGAAGTGATCACCCAAC 59.617 43.478 26.78 20.33 38.29 3.77
2083 2203 3.383185 GTGTTTTGGAAGTGATCACCCAA 59.617 43.478 24.49 24.49 36.94 4.12
2084 2204 2.955660 GTGTTTTGGAAGTGATCACCCA 59.044 45.455 22.21 19.37 0.00 4.51
2085 2205 3.222603 AGTGTTTTGGAAGTGATCACCC 58.777 45.455 22.21 17.01 0.00 4.61
2086 2206 3.253432 GGAGTGTTTTGGAAGTGATCACC 59.747 47.826 22.21 8.07 0.00 4.02
2087 2207 3.882888 TGGAGTGTTTTGGAAGTGATCAC 59.117 43.478 18.47 18.47 0.00 3.06
2088 2208 4.163441 TGGAGTGTTTTGGAAGTGATCA 57.837 40.909 0.00 0.00 0.00 2.92
2089 2209 4.022849 CCTTGGAGTGTTTTGGAAGTGATC 60.023 45.833 0.00 0.00 0.00 2.92
2090 2210 3.891366 CCTTGGAGTGTTTTGGAAGTGAT 59.109 43.478 0.00 0.00 0.00 3.06
2091 2211 3.287222 CCTTGGAGTGTTTTGGAAGTGA 58.713 45.455 0.00 0.00 0.00 3.41
2092 2212 2.223805 GCCTTGGAGTGTTTTGGAAGTG 60.224 50.000 0.00 0.00 0.00 3.16
2093 2213 2.031870 GCCTTGGAGTGTTTTGGAAGT 58.968 47.619 0.00 0.00 0.00 3.01
2094 2214 1.341209 GGCCTTGGAGTGTTTTGGAAG 59.659 52.381 0.00 0.00 0.00 3.46
2095 2215 1.408969 GGCCTTGGAGTGTTTTGGAA 58.591 50.000 0.00 0.00 0.00 3.53
2096 2216 0.469144 GGGCCTTGGAGTGTTTTGGA 60.469 55.000 0.84 0.00 0.00 3.53
2097 2217 0.469892 AGGGCCTTGGAGTGTTTTGG 60.470 55.000 0.00 0.00 0.00 3.28
2098 2218 0.675633 CAGGGCCTTGGAGTGTTTTG 59.324 55.000 1.32 0.00 0.00 2.44
2099 2219 1.115326 GCAGGGCCTTGGAGTGTTTT 61.115 55.000 17.71 0.00 0.00 2.43
2100 2220 1.531602 GCAGGGCCTTGGAGTGTTT 60.532 57.895 17.71 0.00 0.00 2.83
2101 2221 2.116125 GCAGGGCCTTGGAGTGTT 59.884 61.111 17.71 0.00 0.00 3.32
2102 2222 3.971702 GGCAGGGCCTTGGAGTGT 61.972 66.667 17.71 0.00 46.69 3.55
2111 2231 0.398318 ATAGAGATTTCGGCAGGGCC 59.602 55.000 0.00 0.00 46.75 5.80
2112 2232 2.262423 AATAGAGATTTCGGCAGGGC 57.738 50.000 0.00 0.00 0.00 5.19
2113 2233 4.310769 CTGTAATAGAGATTTCGGCAGGG 58.689 47.826 0.00 0.00 0.00 4.45
2114 2234 4.310769 CCTGTAATAGAGATTTCGGCAGG 58.689 47.826 0.00 0.00 35.64 4.85
2115 2235 4.039245 TCCCTGTAATAGAGATTTCGGCAG 59.961 45.833 0.00 0.00 0.00 4.85
2116 2236 3.964688 TCCCTGTAATAGAGATTTCGGCA 59.035 43.478 0.00 0.00 0.00 5.69
2117 2237 4.561105 CTCCCTGTAATAGAGATTTCGGC 58.439 47.826 0.00 0.00 0.00 5.54
2118 2238 4.589374 ACCTCCCTGTAATAGAGATTTCGG 59.411 45.833 0.00 0.00 0.00 4.30
2119 2239 5.279056 GGACCTCCCTGTAATAGAGATTTCG 60.279 48.000 0.00 0.00 0.00 3.46
2120 2240 6.104146 GGACCTCCCTGTAATAGAGATTTC 57.896 45.833 0.00 0.00 0.00 2.17
2136 2256 2.554563 TGTAGGGTTTTAGGGACCTCC 58.445 52.381 0.00 0.00 37.34 4.30
2174 2294 3.001406 GTGGTAGGGCGAGGGTGT 61.001 66.667 0.00 0.00 0.00 4.16
2186 2306 3.305177 GAAAGAGGCGGGCGTGGTA 62.305 63.158 0.00 0.00 0.00 3.25
2192 2312 2.034221 AACAGGAAAGAGGCGGGC 59.966 61.111 0.00 0.00 0.00 6.13
2196 2316 1.888512 TCATTGCAACAGGAAAGAGGC 59.111 47.619 0.00 0.00 0.00 4.70
2207 2327 1.831343 GCCATCATCGTCATTGCAAC 58.169 50.000 0.00 0.00 0.00 4.17
2245 2365 0.463116 GTGGGTGTCAAAGTGTCGGT 60.463 55.000 0.00 0.00 0.00 4.69
2252 2372 0.682852 TACGGAGGTGGGTGTCAAAG 59.317 55.000 0.00 0.00 0.00 2.77
2253 2373 0.393820 GTACGGAGGTGGGTGTCAAA 59.606 55.000 0.00 0.00 0.00 2.69
2255 2375 1.152504 TGTACGGAGGTGGGTGTCA 60.153 57.895 0.00 0.00 0.00 3.58
2259 2379 1.829222 CATTACTGTACGGAGGTGGGT 59.171 52.381 9.17 0.00 0.00 4.51
2269 2389 4.323562 GGGAGATATGGGGCATTACTGTAC 60.324 50.000 0.00 0.00 0.00 2.90
2270 2390 3.844211 GGGAGATATGGGGCATTACTGTA 59.156 47.826 0.00 0.00 0.00 2.74
2274 2394 4.080863 CACTAGGGAGATATGGGGCATTAC 60.081 50.000 0.00 0.00 0.00 1.89
2280 2400 3.772025 GACATCACTAGGGAGATATGGGG 59.228 52.174 0.00 0.00 0.00 4.96
2284 2404 4.358310 TGAGGGACATCACTAGGGAGATAT 59.642 45.833 0.00 0.00 0.00 1.63
2285 2405 3.727391 TGAGGGACATCACTAGGGAGATA 59.273 47.826 0.00 0.00 0.00 1.98
2286 2406 2.520120 TGAGGGACATCACTAGGGAGAT 59.480 50.000 0.00 0.00 0.00 2.75
2287 2407 1.930204 TGAGGGACATCACTAGGGAGA 59.070 52.381 0.00 0.00 0.00 3.71
2288 2408 2.461300 TGAGGGACATCACTAGGGAG 57.539 55.000 0.00 0.00 0.00 4.30
2302 2422 3.839353 GATGGGCAGGCGATGAGGG 62.839 68.421 0.00 0.00 0.00 4.30
2303 2423 2.281345 GATGGGCAGGCGATGAGG 60.281 66.667 0.00 0.00 0.00 3.86
2309 2429 3.451894 GTTTGGGATGGGCAGGCG 61.452 66.667 0.00 0.00 0.00 5.52
2314 2434 3.758931 GTGGCGTTTGGGATGGGC 61.759 66.667 0.00 0.00 0.00 5.36
2327 2447 4.988486 GCAACGTGCTGCTGTGGC 62.988 66.667 4.97 8.75 40.96 5.01
2339 2459 1.442526 GATCTGGAGGCATGGCAACG 61.443 60.000 22.64 6.77 42.51 4.10
2342 2462 2.760378 GGGATCTGGAGGCATGGCA 61.760 63.158 22.64 0.00 0.00 4.92
2343 2463 2.114838 GGGATCTGGAGGCATGGC 59.885 66.667 12.14 12.14 0.00 4.40
2359 2479 2.823829 GCTTTGCTGCGGGTATCGG 61.824 63.158 0.00 0.00 39.69 4.18
2363 2483 1.971167 CTTGGCTTTGCTGCGGGTA 60.971 57.895 0.00 0.00 0.00 3.69
2367 2487 2.027897 TTGCTTGGCTTTGCTGCG 59.972 55.556 0.00 0.00 0.00 5.18
2368 2488 0.601841 ATGTTGCTTGGCTTTGCTGC 60.602 50.000 0.00 0.00 0.00 5.25
2369 2489 1.425412 GATGTTGCTTGGCTTTGCTG 58.575 50.000 0.00 0.00 0.00 4.41
2370 2490 0.038892 CGATGTTGCTTGGCTTTGCT 60.039 50.000 0.00 0.00 0.00 3.91
2377 2497 3.451894 GGGGGCGATGTTGCTTGG 61.452 66.667 0.00 0.00 34.52 3.61
2388 2508 1.451387 GACTACAATGGTGGGGGCG 60.451 63.158 0.00 0.00 0.00 6.13
2392 2512 1.278127 ACCTTCGACTACAATGGTGGG 59.722 52.381 0.00 0.00 0.00 4.61
2397 2519 6.978343 TGGAAATAACCTTCGACTACAATG 57.022 37.500 0.00 0.00 0.00 2.82
2398 2520 8.575649 AAATGGAAATAACCTTCGACTACAAT 57.424 30.769 0.00 0.00 0.00 2.71
2399 2521 7.120138 GGAAATGGAAATAACCTTCGACTACAA 59.880 37.037 0.00 0.00 0.00 2.41
2403 2525 5.816682 AGGAAATGGAAATAACCTTCGACT 58.183 37.500 0.00 0.00 0.00 4.18
2415 2537 8.263640 TGACTTTGAATCAAAAGGAAATGGAAA 58.736 29.630 9.85 0.00 40.74 3.13
2465 2587 9.562583 GCATATAAACTTACGTTTGGAAATTGA 57.437 29.630 7.55 0.00 42.94 2.57
2466 2588 9.347934 TGCATATAAACTTACGTTTGGAAATTG 57.652 29.630 7.55 0.00 42.94 2.32
2471 2593 6.459024 GGCATGCATATAAACTTACGTTTGGA 60.459 38.462 21.36 0.00 42.94 3.53
2473 2595 5.685511 GGGCATGCATATAAACTTACGTTTG 59.314 40.000 21.36 0.00 42.94 2.93
2476 2598 4.274950 GTGGGCATGCATATAAACTTACGT 59.725 41.667 21.36 0.00 0.00 3.57
2477 2599 4.274705 TGTGGGCATGCATATAAACTTACG 59.725 41.667 21.36 0.00 0.00 3.18
2479 2601 6.306199 AGATGTGGGCATGCATATAAACTTA 58.694 36.000 21.36 0.00 35.07 2.24
2482 2604 5.458041 AAGATGTGGGCATGCATATAAAC 57.542 39.130 21.36 8.20 35.07 2.01
2491 2613 4.585581 TCATCCATTTAAGATGTGGGCATG 59.414 41.667 3.83 0.00 41.56 4.06
2492 2614 4.806892 TCATCCATTTAAGATGTGGGCAT 58.193 39.130 3.83 0.00 41.56 4.40
2495 2617 6.964807 TGAATCATCCATTTAAGATGTGGG 57.035 37.500 3.83 0.00 41.56 4.61
2496 2618 7.865889 CACATGAATCATCCATTTAAGATGTGG 59.134 37.037 0.00 0.00 41.56 4.17
2512 2634 9.176460 ACATATGAACAACATACACATGAATCA 57.824 29.630 10.38 0.00 43.12 2.57
2549 2671 8.046708 TGGCTTCACATATACACATTCTAGTTT 58.953 33.333 0.00 0.00 0.00 2.66
2550 2672 7.564793 TGGCTTCACATATACACATTCTAGTT 58.435 34.615 0.00 0.00 0.00 2.24
2551 2673 7.124573 TGGCTTCACATATACACATTCTAGT 57.875 36.000 0.00 0.00 0.00 2.57
2552 2674 8.613060 ATTGGCTTCACATATACACATTCTAG 57.387 34.615 0.00 0.00 0.00 2.43
2553 2675 8.978874 AATTGGCTTCACATATACACATTCTA 57.021 30.769 0.00 0.00 0.00 2.10
2554 2676 7.886629 AATTGGCTTCACATATACACATTCT 57.113 32.000 0.00 0.00 0.00 2.40
2555 2677 8.190122 TGAAATTGGCTTCACATATACACATTC 58.810 33.333 0.00 0.00 30.31 2.67
2556 2678 8.065473 TGAAATTGGCTTCACATATACACATT 57.935 30.769 0.00 0.00 30.31 2.71
2595 2717 8.667076 AATCGACATTGATATTCATGACTTCA 57.333 30.769 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.