>input_sequence_72674
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------------------------------------------------------------------ATGGCGGCGGCGGC
GGCGGCG---CTAAGGCTCGGCGGTCGCATGCTGCTCCGACGAACTCAAGAGCAAGGGCGGCGCGTCTTCTCGGATCCGC
AACGGCGGCTCTTCGCGGACACGAGCGTGCGTGCAACCTTGGATT-----------GAATGTCGTGCTGCGATGAAAGAT
T------GTATC---TATCTATTTTGTGGTCGATCATCATCGTTCATATTCTTCACCCTGCATGCATGCAA----GCAGG
CCACCGCCCCTGAGGGGAAGCAACCTCTCGCGATCCGCTTGGCGGAGATGAAGGAGAAGAAAGAGGAGCTTTACAACATG
GGCTTTTCTTTGGCAACCGAGTACAATCTCCCTTGCGGTGTCGGCAGAGAGAACAAACAGCTGCTGGAGCTGCTCTCGGT
GCAAGTCCAGCCAAGGCCCAATGATGTCTACTGGTTTGTTCTTTGCTTACTACGTACTG-----TATAAATTATTATATC
ATGTCATTGTCATGTCGTTTCTCATGGATGGGTCGCTTGATTATTAACTAGGATGCGGCGGCGGAGGATGGAGAGGATGA
AGCGATTCGTGAAAATTTGGGGGGTATTTACTCTGGTGTGTACGACTGT---GGACGGCCTGCAGATGTTGAGCAAGGAG
ATACGTACGCCTCAAACCAAGGAACGGGCTGGATGA--------------------------------------------
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>chr1A_1_TraesCS1A01G441900
ATTGTCAAGTATCTTTAGGGATGAAGATCTCGGCAAGATATGAAGTTCTTGAAGAATGAAAAAAAACCGATCTACTTCTT
TTTGGTATTTTAGACTAAATTCTTTTGTTCCTCGATACTCAATCAAACCCTCTTTTTAAAAGATGGAATCTTCCTCTGGG
CTCTCGTATTCGTCCTCTGAATCTTCTTCTGAGTCTTCCTCTAAAGTACCATATTTTTCCTCTGCGCTTTCCCCTGGGCT
GCCATATTCGTACAAAAATAGTTCATTAATTTTAAAAGGCGTAAATTTAAAAAAATCTCATGAATTTTTAAAAATAAGTT
AATGCGTTTAAAAATGGGGAATTGCAAGAATAGAAAAATAATAAATCAAGACAGAGAAATTCGGTTGAAGACTTCTAGAA
GCTTCAAAAAACCGATGCAAGCCTAAAAAACCAAGTAGAAAGCGTTTTCTTCATCCGGAA-TAACTGACGCCCATACGGA
TGCATCGATCTAATCTAACACTAAAATATGTCAAGGTACAAA--------CGTCAATGAATTCCGGAGTACATGGTCCGG
CGTGGGCGCTGTCTACCGAAACAACACTAACCGGCGCTAAAGGTGTCATACTCTTTTTTTTTAGACATAAAGGTGTCATA
CTCAGCTCAACCGAGTATGCTTCATGGTCCAGGCCCAACCAAGTGAACTTTCTAGATTGGGCTTAGGCCGCTCCAGGTAT
CCTGGGCCGATTCTTTGCCTTGGGGCTTAGCGTCAGTCTCTCTTAATTTGACCTCCTTCATTTGAATGATCCAGG-CCGG
CAGGCCGCTACGTGTTCGTGGTAGTTCTAAAAAAAAAACGTGCTCGTGGTGGAGATGGAAACGAAGGCCACGTCGGTGGT
GGCGGACTCCAAAGGAATAATACGTTTCTTCTAAAAAGGAACG--------------AAAGGTATAATACGTGGTGGGTC
GTTGCAGACCAA--ACCCGATCCGATCCGGAAAACTAGAAATCGAAACTAGCTAGGATTAATAGCCATGGCGGCGGCGGC
GGCGGCG---CTAAGGCTCGGCGGTCGCATGCTGCTCCGACGAACTCAAGAGCAAGGGCGGCGCGTCTTCTCGGATCCGC
AACGGCGGCTCTTCGCGGACACGAGCGTGCGTGCAACCTTGGATT-----------GAATGTCGTGCTGCGATGAAAGAT
T------GTATC---TATCTATTTTGTGGTCGATCATCATCGTTCATATTCTTCACCCTGCATGCATGCAA----GCAGG
CCACCGCCCCTGAGGGGAAGCAACCTCTCGCGATCCGCTTGGCGGAGATGAAGGAGAAGAAAGAGGAGCTTTACAACATG
GGCTTTTCTTTGGCAACCGAGTACAATCTCCCTTGCGGTGTCGGCAGAGAGAACAAACAGCTGCTGGAGCTGCTCTCGGT
GCAAGTCCAGCCAAGGCCCAATGATGTCTACTGGTTTGTTCTTTGCTTACTACGTACTG-----TATAAATTATTATATC
ATGTCATTGTCATGTCGTTTCTCATGGATGGGTCGCTTGATTATTAACTAGGATGCGGCGGCGGAGGATGGAGAGGATGA
AGCGATTCGTGAAAATTTGGGGGGTATTTACTCTGGTGTGTACGACTGT---GGACGGCCTGCAGATGTTGAGCAAGGAG
ATACGTACGCCTCAAACCAAGGAACGGGCTGGATGACTTCAACGATTGGTG----------------------------T
TACATGAAACATGACTGGTGGAACGGCCGCTAGCTACCTCAACTCCTTGTGCATGCATCCTTGTAGCTCAAGATCCATGA
TGAATGCTCCCCTTCGGTTTTAGCAGAGGGCTC--------------------------AAGGTGAATGATCAATATCCA
CCCACTAGGTCTAGTTATAATTAAGTTTCTCATGTTCCGATCACTCTGCAAGA-CCTAATCCTTTGTGAT---TGTTTAC
TATAGTTTGTCGATAAATCGTCTCAATTATCCCCTTGACTTTTACTAGAAAGTATGTTTTTTCGTCCATCCATTCATCAT
GTTGATAACTTTTGGTCCCTTGGCTATCAAACTGTACAAAACCCAAACTAACAAAATCGGTTACTTTTGGTCACTTTCCC
GACTAGGTCCACTATGTAGGTCAGGTGATCGAAGACTGAGGGTTGGGTGATCACTTCCAAAACACTCCAAGGCCCTGCCG
AAATCTCTATTACAGGGAGGTCCCTAAAACCCTACATGTAGGCGTTCCCGCTCACACCCTCGCCCTACCACGCCCGCCTC
TTTCCTGTTGCAATGACGATGATGGCGTGCATCTGCTGCCATGCACCGACACTTTGACACCCACCTCCGTACAGTAATGC
CCCATATCTCCCTAGTGATGTCCCTCATCGCCTGCCCATCCCAAACGCCACAGCAGCACGTTGCCATGCCTCCAGATCCC
GATACCCGCAGCAAAGCCAAGCAACATCGCCC--CCACCATTGTAGTCGAAGGTTATTTCCATTTCCTTTTGATTCAAAG
TCAATTTGAAATGGATGGTTCATATGTCAATTTCCAAACGTAAGTTTATATGCATGCCCACATCTTAAATGGATGATTCA
TGTGTATGTTGTTCATATGTGATTTAAAAAAAACTAGAATGTGTATATGTGAAGCCAATTTCATTTGCAATGTGCATGAA
GTCATGAATATCAATGTCGATTATATTGTATTTATTCCCCGCAAAAAAAAAGTGTT
>chr1D_300
ATGAA---------------------------------------------------------------------------
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-----------------------------------------------------------------TTTTAAAAATAAGTT
ATTGTCTTTAAAAATGGTGAATTACAAGAAAATAATAATAATAAATCAAGACAGAGAAATCCGGTCAGAAGTTTCTAGAA
GCTTCACGAAACCG-TGCAAGCTTAAGAACCCAAGTAGAAAGTACTTCCTACGTCCGGACTTAGTTGACACTTAGACAGA
TGTATCT-----ATCTAGCACCAAAAAATGTCTAGGCACATATTATAGAGCGTCAATGAATTCCGAAGTACATGGTCCGG
CGTGGGCGCTGTCTACCGAAACAACTCTAACCGGCACTAAAGGTGTCATACTC-TTTTTTTTAGACATAAAGGTGTCATA
CTCAGCTCAACCGAGTATGCTTCATGGTCCAGGCCCAACCAAGTGAACTTTCTAGATTGGGCTTAGGCCACCCCAGGTAT
CCTGGGCCGATTCTTCGGCTTGGGTCCCGCTGTCAGTCTCTCTTAATTTTATCTCCTTCCTTTGAATGATCCAGGCCCGG
CAGGCCGCTACGTGTTCGTGGTAGTTCTGAAAAAAAACGC-GCTCGTGGTGGAGACGGAAACGAAGGCCACGTCGGTGGT
AGCGGACTCCAAAGGAATAATACCTTTCTTCTAAAAAAGAAAGGTATAATGGACTCCAAAGGTATAATGCGTGGTCGGTC
GTTGCAGACCATATAC-----CCGATCCGAAAAACTAGAAATCGAAACTAG----GATTAATAGCCAT---------GGC
GGCGGCG---TTAAGGCTCGGCGGTCGCATGCTGCTCCGACGAACTCAAGAGCAAGGGCGGCGCGTCTTCTCGGATCCGC
AACAGCGGCTCTTCGCGGACACGAGCGTGCGTGCAACCTTGGATTTTTCTCCCTCTGAATGTCGTGGTGTGATCAAAGAT
TGTACTAGTATC---TATCTATTTTGTGGTGGATCT----------TATTCTTCACCC----TGCATGCATGCATGCAGG
CCACCGCCCCTGAGGGCAAGCAACCTCTCGCGATCCGCTTGGCGGAGATGAAGGAGAAGAAAGAGGAACTTTACAACATG
GGATTTTCGTTGGCAACCGAGTACAATCTCCCTCGCGGTGTCGGCCGAGAGAACAAGCAGCTGCTGGAGCTGCTCTCGGT
GCAAGTCCAGCCAAGGCCCAATGATGTCCACTGGTTTGTTCTTTGCTTACTACGTACTG-----TATAAATTATTA----
-------TGTCATGTCGTTTCTCATGGATGGGTCGCTTGATTATTAACTAGGATGCGGCGGCGGAGGATGGAGAGGTTGA
AGCGATTCGTGAAAATTTGGGGGGTATTTACTCTGGTGTGTACGACTGT---GGAGGGCCTGCAGATGTTGAACAAGGAG
ATACGTACGCCTGAAACCAAGGAACGGGCTGGATGATTTCGACGATTGGTGGTCTGGAAACAAGAGTTGATCCCAGCACT
TACATGAAACATGACTGGTGGAACAGCCGCTAGCTACCTCAACTCCTTGTCCATGCATCCTTGTAGCTCAAGATCCATGA
TGATTGCTCCTCTTCGGTTTTAGCAGAGGGCTC--------------------------AAGGTGAATGATCAATATCCA
CCCGCTAGGTCTAGTTATAATTAAGTTTCTCATGTGCCGATCACTCTGCAAGA-CCTAATCCTTTGTCGAT---------
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>chr1A_916
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-----------------------------------------------------------AGATATAATACGTGGTCGGTC
GTTGCAGACCAG--AC-----CCTATCCGAAAAACTAGAAATCGAAACTAGCTAGGATTAATAGCCATGGCGGCGGCGGC
GGCGGCGGCCCTAAGGCTCGGTGGTCGCATGCTGCTCCGACGAACTCAACAGCAAGGGCGGCGCGTCTTCTCGGATCCGC
AACGGCGGCTCTTCGCGGACACGAGCGTGCGTGCAACCTTGGATTTCTCTCCCTCTGAATGTCGTGCTGTGATCAAAGAT
TGTACTAGTATCTAGTATCTATTTTGTGGTGGATCT----------TATTCTTCGCCC----TGCATGCAA----GCAGG
CCACCGCCCCTCAGGCCAAGCAACCTCTCGCGATCCGCTTGGCGGAGATGAAGGTGAAGAAAGAGGAGCTTTACAACATG
GGCTTTTCCTTGGCAACCGAGTACGATCTCCCTCGCGGTGTCCGCCGAGAGAACAAAGAGCTGTTGGAGCTGCTCTCGGT
GCAAGTCCAGCCCAGACCCAATGATGTCTACTGGTTTGTTCGGTTCTTTTTTTCTTTCTGCTTCTAGAAATTATTACATC
ATGGTGTTTCTC--TCGTATATCATTGATTGGTCGCTTGATTATTAACTAGGATGTGGCGGTGGAGGATGGAGAGGATGA
AGCGATTTGTGATAATTTGGGGGGTATTTACTCTGGTTTTGAAGACTGCAGAGGGCGGCGTGCAGATTTTGAGCAAGGAG
ATACGG----CTGAAACGAAGGAACGGGCTGGATGATTTCGAGGATTGGTGGTCTGGAAAGAAGAGTTGGTCCCAGCAGT
T-------ACATGACTGGTGGAACAGCCGCTAGCTACCTAAACTCCTTCTGCAGGCATCCTTGTAGCTCAAGATCCATGA
TGAATACTCCTCTTAGGTTT------------------------------------------------------------
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>chr1D_916
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-----------------------------------------------------------AGATATAATACGTGGTCGATC
GTTGCATACCAG--AC-----CCGATCCGAAAAACTAGAAATCGAAACTAGCTAGGATTAATAGCCATGG---CGGCGGC
GGCGGCG---CTAAGGCTCGGCGGTCGCATGCTGCTCCGACGAACTCAACAGCAAGGGCGGCGCGTCTTCTCGGATCCGC
AACGGCGGCTCTTCGCGGACACGAGCGTGCGTGCAACCTTGGATTTCTCTCCCTCTGAATGTCGTGCTGTGATCAAAGAT
TGTAGTAGTATC---TATCTATTTTGTTGTCGATCT----------TATTCTTCACCC----TGCATGCAA----GCAGG
CCACCGCCCCTGAGGGAAAGCAACCTCTCGCGATCCGCTTGGCGGAGATGAAGGAGAAGAAAGAGGAGCTTTACAACATG
GGCTTTTCCTTGGCAACTGAGTACGATCTCCCTCGCGGTGTCCGCCGAGAGAACAAAGAGCTGTTGGAGCTGCTCTCGGT
GCAAGTCCACCCCAGACCCAATGATGTCTACTGGTTTGTTCGATTTTTTTTTTCT----GCTTCTAGAAATTATTACATC
ATGGTGTTTCTC--TCGTATATCATTGATTGGTCGCTTGATTATTAACTAGGATGCGGCGGCGTTGGATGGAGAGGATGA
AGCGATTTGTGATAATTTGGGGGGTATTTACTCTGGTTTTGAAGACTGCAGAGGGCGGCGTGCAGATTTTGAGCAAGGAG
ATACGG----CTGAAACGAAGGAACGGGCTGGATGATTTCGAGGATTGGTGGTCTGGAAAGAAGAGTTGGTCCCAGCAGT
T-------ACATGACTGGTGGAACAGCCGCTAGCTACCTAAACTCCTTCTGCATGCATCCTTGTAGCTCAAGATCCATGA
TGAATACTCCTCTTAGGTTTAGTTTGCTATCAATTTAGTCCATCACTAGCAGGTGGCTGAAGGTGAATGATCAATATCCA
CCCACCAGGTCTAGTTATTTT---GTTTCTCATGTT-CGATCACTCTGCAAGAACCTAATCCTTTGTGATATCTGTTTAC
CATAGTCTGTCGATAATCATTTCAATTAT---CCTTGCTTTCTACTAGAAAAGTATATTTTTCGTCGATCCATTTATAAT
GTT---------TGGTCCCTCGACTATGAAACTGTACAAAACCTCAACTAACAAACCACTCCAGCGTT------------
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----------------GAGGTCCCTAAAACCCT-CATGTAGGTGTTCCCGCTCCCACCCTCGCCCCACCACACCCACCTC
TTTCCTCTTGCAATGACGACCCTGTCGTGCATCTGCTGCCATGCGCCGACATCTCGACGCCCACCTCCACACACTAATGT
CCCCATATCTCCTCACGATGTGTCTCATTGCCTACCCATCCCAGACACCACAGCACCATGTCACCATGCCTCCAGATCAC
GACACCTATCGCAAAGACAAACAACATTGCCTCGCCACTGCTGTTGTCGAAGGTTAATTCCATT---TTTTTATTCAAAG
TCAATTTGAAATGGATGGTTCATATGGGAATTCCGAATTGAAATTTTATATGTGTGTGCACATGTTAAATGGACGATTCA
TGTGTA---TGTTCATATGTGATTTTTGAATTTTGCACATGTGTATATGTGAAGTCAATTTCATTTGCAATGTGCAAGAC
ATCATGAATATCAATGTCGATTA---------------------------------
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-S--SS-----------S-----S------S-S--S------------------------S----SSS-SSS--------
------SS------S-------S---S--S------------SSS--S--S-S------S---SS----S-SS-S--S--
--S---SSSSSS-----S---S----S-----S---S---S------------------------S--------------
-------------------------S---------S-----------------S--------------------------
---------------------------------------------------------------------S-S--------
---------------S-S------S-SSSSS------------------S-S-------S--------------------
----------------------------S--------SSSS--------------S------------------------
S----------------------S-------------S---S---------------------------------S----
-----------S----SSSSS--------S--------------------------------------------------
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---------------------------------------------------------------------S---S------
-----------------------------------SSSSSSSSSSS------------SSSS------------------
----------------S---------------------------------------------------------------
--------S------------------------S-----------S----------------------------------
----------------------------------------------------------------------------S---
---SSS--------------------------------------------------------------------------
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------------S-----------------------S---S---------------------------------------
------------------------S-------------------------------------------------------
----------S---------------------------------------------------------------------
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S-----S---------SSSS-SSS-S-SSSSS-----SS--S---------SSSSSS---------S-------S--S--
---SSSSSSSSS--------S-S----S---------------SS----------SSSSSSS-SSS--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS-----------------S--------S----------S-----------S-----S---S----
------S------------SSS--S-------------------S------SS-S---S---------SS---S-----S
---SSSSSSS---SSS-----SS-----S----S---------S--S--------S--S--SS---------------S-
--S---SSSS------S---S------S---S------SSS---S-----------S-------SSS----S--------
--------------------------SS----S-S--SS-S--S--------SS--SS-----S---------S------
------SSS----------------SSS--SSSSSSSS----------------S---------------------S--S
S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_175
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---------------------------------------------------------------------------CTGGG
CTCTCGTATTCGTCC-----------------------------------------------------------------
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>reverse_2190
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-----------------------------CGAAGACTGAGGGTTGGGTG-------------------------------
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