Multiple sequence alignment - TraesCS1A01G427500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G427500 chr1A 100.000 2952 0 0 1 2952 581870641 581867690 0.000000e+00 5452.0
1 TraesCS1A01G427500 chr1A 100.000 569 0 0 3205 3773 581867437 581866869 0.000000e+00 1051.0
2 TraesCS1A01G427500 chr1A 84.058 69 7 3 3341 3405 564329498 564329430 3.150000e-06 63.9
3 TraesCS1A01G427500 chr1D 94.372 2896 127 21 1 2880 484555321 484552446 0.000000e+00 4412.0
4 TraesCS1A01G427500 chr1D 89.947 189 16 1 2121 2306 484443743 484443555 1.350000e-59 241.0
5 TraesCS1A01G427500 chr1D 80.980 347 26 15 3218 3531 484552433 484552094 4.870000e-59 239.0
6 TraesCS1A01G427500 chr1B 90.724 2943 176 42 1 2880 674810776 674807868 0.000000e+00 3832.0
7 TraesCS1A01G427500 chr1B 80.170 353 37 19 3217 3546 674807852 674807510 2.270000e-57 233.0
8 TraesCS1A01G427500 chr7A 99.563 229 1 0 3545 3773 57206014 57206242 5.830000e-113 418.0
9 TraesCS1A01G427500 chr7A 98.253 229 3 1 3546 3773 579566146 579565918 2.110000e-107 399.0
10 TraesCS1A01G427500 chr4B 99.561 228 0 1 3546 3773 302741078 302741304 7.540000e-112 414.0
11 TraesCS1A01G427500 chr4A 97.345 226 5 1 3547 3772 562300965 562300741 2.130000e-102 383.0
12 TraesCS1A01G427500 chr3A 96.930 228 5 2 3546 3773 611190480 611190705 7.650000e-102 381.0
13 TraesCS1A01G427500 chr3A 96.476 227 8 0 3547 3773 1917926 1918152 3.560000e-100 375.0
14 TraesCS1A01G427500 chr3A 96.018 226 8 1 3548 3773 608139911 608140135 2.140000e-97 366.0
15 TraesCS1A01G427500 chr5B 96.035 227 8 1 3547 3773 34896308 34896533 5.950000e-98 368.0
16 TraesCS1A01G427500 chr7B 95.633 229 9 1 3546 3773 3362644 3362416 2.140000e-97 366.0
17 TraesCS1A01G427500 chr7B 93.023 43 3 0 3341 3383 96370595 96370637 3.150000e-06 63.9
18 TraesCS1A01G427500 chr6B 84.058 69 7 3 3341 3405 14723641 14723573 3.150000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G427500 chr1A 581866869 581870641 3772 True 3251.5 5452 100.000 1 3773 2 chr1A.!!$R2 3772
1 TraesCS1A01G427500 chr1D 484552094 484555321 3227 True 2325.5 4412 87.676 1 3531 2 chr1D.!!$R2 3530
2 TraesCS1A01G427500 chr1B 674807510 674810776 3266 True 2032.5 3832 85.447 1 3546 2 chr1B.!!$R1 3545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 369 0.539986 GTCCCGTCTGGCTGGAAATA 59.460 55.0 0.0 0.0 32.16 1.40 F
355 379 1.576356 GCTGGAAATAGCCGACTGAG 58.424 55.0 0.0 0.0 37.73 3.35 F
1157 1212 1.587043 CGCTCTCGGTCAGACTTGGA 61.587 60.0 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2248 1.070445 CTTAGCTGCTGGATCTCCCTG 59.930 57.143 13.43 0.0 36.99 4.45 R
2231 2296 2.989253 TCGCGGGAGAGTGCTTCA 60.989 61.111 6.13 0.0 0.00 3.02 R
2795 2864 0.320374 TCACGCCTCAAGACCGAAAT 59.680 50.000 0.00 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 105 2.764314 CGCAGGCCGAAATCCCAAG 61.764 63.158 0.00 0.00 40.02 3.61
345 369 0.539986 GTCCCGTCTGGCTGGAAATA 59.460 55.000 0.00 0.00 32.16 1.40
355 379 1.576356 GCTGGAAATAGCCGACTGAG 58.424 55.000 0.00 0.00 37.73 3.35
428 452 3.078836 TTCTAGGAACCGCGGGGG 61.079 66.667 31.76 9.88 43.62 5.40
449 473 1.771854 TGGCTGTGGTTGTCCTTAGAA 59.228 47.619 0.00 0.00 34.23 2.10
512 544 5.524971 CATGGATGGATTATTGCTGTTGT 57.475 39.130 0.00 0.00 0.00 3.32
513 545 4.987408 TGGATGGATTATTGCTGTTGTG 57.013 40.909 0.00 0.00 0.00 3.33
566 598 3.045601 TGCAACTCCTCTTGCTTAGAC 57.954 47.619 5.56 0.00 45.79 2.59
572 604 1.618837 TCCTCTTGCTTAGACGCAACT 59.381 47.619 0.00 0.00 44.30 3.16
708 740 1.934463 GCGAGATGCCCGTGTTATG 59.066 57.895 0.00 0.00 37.76 1.90
787 820 4.232221 CTGCAGAGCATAACCTTGTTTTG 58.768 43.478 8.42 0.00 38.13 2.44
812 852 5.359009 CCCCTGTGATCCATATTTGCATATC 59.641 44.000 0.00 0.00 0.00 1.63
815 855 6.882678 CCTGTGATCCATATTTGCATATCTGA 59.117 38.462 4.44 0.00 0.00 3.27
898 952 3.075884 GGCGAGACTAAGATCGGATAGT 58.924 50.000 8.13 8.13 39.31 2.12
928 982 5.992829 TCGCACTTCCTTTTCTGTATTTGTA 59.007 36.000 0.00 0.00 0.00 2.41
931 985 7.360861 CGCACTTCCTTTTCTGTATTTGTATGA 60.361 37.037 0.00 0.00 0.00 2.15
933 987 9.003658 CACTTCCTTTTCTGTATTTGTATGAGT 57.996 33.333 0.00 0.00 0.00 3.41
945 999 8.941977 TGTATTTGTATGAGTGAAATGTACCAC 58.058 33.333 0.00 0.00 0.00 4.16
956 1011 6.043938 AGTGAAATGTACCACTCCTTTTCCTA 59.956 38.462 0.00 0.00 39.19 2.94
967 1022 4.721776 ACTCCTTTTCCTATACTGCATGGA 59.278 41.667 0.00 0.00 0.00 3.41
970 1025 6.672593 TCCTTTTCCTATACTGCATGGAAAT 58.327 36.000 14.31 0.00 44.71 2.17
971 1026 7.811282 TCCTTTTCCTATACTGCATGGAAATA 58.189 34.615 14.31 0.00 44.71 1.40
979 1034 4.595762 ACTGCATGGAAATAATGATGCC 57.404 40.909 0.00 0.00 40.45 4.40
980 1035 3.005050 ACTGCATGGAAATAATGATGCCG 59.995 43.478 0.00 0.00 40.45 5.69
981 1036 3.220940 TGCATGGAAATAATGATGCCGA 58.779 40.909 0.00 0.00 40.45 5.54
1118 1173 2.357517 AGCTGGGTTCTTGTCGCG 60.358 61.111 0.00 0.00 0.00 5.87
1157 1212 1.587043 CGCTCTCGGTCAGACTTGGA 61.587 60.000 0.00 0.00 0.00 3.53
1271 1326 3.701040 TCATATGTGCAGTCTGCTGAGTA 59.299 43.478 24.76 12.81 45.31 2.59
1489 1545 5.943416 AGCTGGCATTGTAAATACAGTAACA 59.057 36.000 0.00 0.00 37.52 2.41
1516 1572 8.400186 CAGTTGATGTCATTAACTATCATTGCA 58.600 33.333 19.39 0.00 37.03 4.08
1581 1637 8.768397 ACCTTGAACATAATCCATGAGTACTAA 58.232 33.333 0.00 0.00 38.10 2.24
1582 1638 9.265901 CCTTGAACATAATCCATGAGTACTAAG 57.734 37.037 0.00 0.00 38.10 2.18
2183 2248 2.031807 TCGAGATCTGTTCGAATCCGAC 59.968 50.000 0.00 0.00 45.50 4.79
2231 2296 0.036105 TCGCAGATCATTGTGTGGCT 60.036 50.000 0.00 0.00 0.00 4.75
2423 2488 2.185608 GGCGAGCTGAAGGAGGTC 59.814 66.667 0.00 0.00 44.51 3.85
2516 2581 2.665000 CAGGAAAGGCTCTCGGCA 59.335 61.111 0.00 0.00 44.01 5.69
2548 2613 5.067936 CCAACATCTTGTAGGATCTACTCGT 59.932 44.000 6.63 0.00 0.00 4.18
2573 2640 2.953821 GCTAAGGCGCAGTTTGCA 59.046 55.556 18.47 0.00 45.36 4.08
2582 2649 0.527565 CGCAGTTTGCAAGGGCTAAT 59.472 50.000 14.42 0.00 45.36 1.73
2602 2669 5.567138 AATGTAGCTAGCAAATTGGTGTC 57.433 39.130 18.83 0.00 0.00 3.67
2661 2728 3.507622 GCTAGGGTCTTTGCAGAATGTTT 59.492 43.478 0.00 0.00 39.31 2.83
2662 2729 4.700213 GCTAGGGTCTTTGCAGAATGTTTA 59.300 41.667 0.00 0.00 39.31 2.01
2663 2730 5.392057 GCTAGGGTCTTTGCAGAATGTTTAC 60.392 44.000 0.00 0.00 39.31 2.01
2664 2731 4.469657 AGGGTCTTTGCAGAATGTTTACA 58.530 39.130 0.00 0.00 39.31 2.41
2667 2734 5.634859 GGGTCTTTGCAGAATGTTTACATTG 59.365 40.000 12.50 2.01 45.72 2.82
2668 2735 6.446318 GGTCTTTGCAGAATGTTTACATTGA 58.554 36.000 12.50 0.14 45.72 2.57
2670 2737 7.599998 GGTCTTTGCAGAATGTTTACATTGATT 59.400 33.333 12.50 0.00 45.72 2.57
2671 2738 8.981647 GTCTTTGCAGAATGTTTACATTGATTT 58.018 29.630 12.50 0.00 45.72 2.17
2672 2739 8.980610 TCTTTGCAGAATGTTTACATTGATTTG 58.019 29.630 12.50 7.07 45.72 2.32
2691 2759 7.707104 TGATTTGTTTCTTTCCTCTCAGTTTC 58.293 34.615 0.00 0.00 0.00 2.78
2692 2760 7.557719 TGATTTGTTTCTTTCCTCTCAGTTTCT 59.442 33.333 0.00 0.00 0.00 2.52
2696 2764 5.614324 TTCTTTCCTCTCAGTTTCTGTCA 57.386 39.130 0.00 0.00 32.61 3.58
2712 2780 2.221169 TGTCATTGGTTGCTCAGTGTC 58.779 47.619 0.00 0.00 0.00 3.67
2713 2781 2.221169 GTCATTGGTTGCTCAGTGTCA 58.779 47.619 0.00 0.00 0.00 3.58
2714 2782 2.225019 GTCATTGGTTGCTCAGTGTCAG 59.775 50.000 0.00 0.00 0.00 3.51
2717 2786 2.708216 TGGTTGCTCAGTGTCAGAAA 57.292 45.000 0.00 0.00 0.00 2.52
2727 2796 4.389374 TCAGTGTCAGAAAAAGGGCTTAG 58.611 43.478 0.00 0.00 0.00 2.18
2729 2798 4.580580 CAGTGTCAGAAAAAGGGCTTAGTT 59.419 41.667 0.00 0.00 0.00 2.24
2730 2799 5.067805 CAGTGTCAGAAAAAGGGCTTAGTTT 59.932 40.000 0.00 0.00 0.00 2.66
2731 2800 5.656859 AGTGTCAGAAAAAGGGCTTAGTTTT 59.343 36.000 0.00 0.00 0.00 2.43
2732 2801 6.154534 AGTGTCAGAAAAAGGGCTTAGTTTTT 59.845 34.615 0.00 0.00 38.31 1.94
2755 2824 4.980573 TCTTTTTCAGTTGCTAGGGCTAA 58.019 39.130 0.00 0.00 39.59 3.09
2757 2826 3.350219 TTTCAGTTGCTAGGGCTAAGG 57.650 47.619 0.00 0.00 39.59 2.69
2758 2827 1.952621 TCAGTTGCTAGGGCTAAGGT 58.047 50.000 0.00 0.00 39.59 3.50
2759 2828 3.110293 TCAGTTGCTAGGGCTAAGGTA 57.890 47.619 0.00 0.00 39.59 3.08
2790 2859 6.428159 AGATTGAACTTGGATGAGTGTTGTAC 59.572 38.462 0.00 0.00 0.00 2.90
2795 2864 4.591498 ACTTGGATGAGTGTTGTACAGGTA 59.409 41.667 0.00 0.00 0.00 3.08
2802 2871 4.039488 TGAGTGTTGTACAGGTATTTCGGT 59.961 41.667 0.00 0.00 0.00 4.69
2803 2872 4.563061 AGTGTTGTACAGGTATTTCGGTC 58.437 43.478 0.00 0.00 0.00 4.79
2817 2887 1.215382 CGGTCTTGAGGCGTGATCA 59.785 57.895 0.00 0.00 0.00 2.92
2821 2891 2.159099 GGTCTTGAGGCGTGATCATGTA 60.159 50.000 16.18 0.00 0.00 2.29
2823 2893 4.122776 GTCTTGAGGCGTGATCATGTAAT 58.877 43.478 16.18 2.88 0.00 1.89
2843 2913 0.328258 GTGCCCCCTCTTTTAGCTCA 59.672 55.000 0.00 0.00 0.00 4.26
2854 2924 3.744426 TCTTTTAGCTCAGCGTGGTTTAC 59.256 43.478 0.00 0.00 0.00 2.01
2862 2932 2.662527 CGTGGTTTACGCCGGTGT 60.663 61.111 26.18 26.18 46.92 4.16
2873 2943 4.924019 CCGGTGTGGCTTCGAATA 57.076 55.556 0.00 0.00 0.00 1.75
2880 2950 3.206150 GTGTGGCTTCGAATATGTGGAT 58.794 45.455 0.00 0.00 0.00 3.41
2882 2952 2.031682 GTGGCTTCGAATATGTGGATGC 60.032 50.000 0.00 0.00 0.00 3.91
2885 2955 4.065088 GGCTTCGAATATGTGGATGCTTA 58.935 43.478 0.00 0.00 33.05 3.09
2886 2956 4.083802 GGCTTCGAATATGTGGATGCTTAC 60.084 45.833 0.00 0.00 33.05 2.34
2887 2957 4.511454 GCTTCGAATATGTGGATGCTTACA 59.489 41.667 0.00 0.00 0.00 2.41
2889 2959 6.293626 GCTTCGAATATGTGGATGCTTACATT 60.294 38.462 0.00 0.00 38.41 2.71
2890 2960 7.566760 TTCGAATATGTGGATGCTTACATTT 57.433 32.000 0.00 0.00 38.41 2.32
2891 2961 7.189693 TCGAATATGTGGATGCTTACATTTC 57.810 36.000 0.00 0.00 38.41 2.17
2892 2962 6.992123 TCGAATATGTGGATGCTTACATTTCT 59.008 34.615 0.00 0.00 38.41 2.52
2893 2963 7.041848 TCGAATATGTGGATGCTTACATTTCTG 60.042 37.037 0.00 0.00 38.41 3.02
2895 2965 8.523915 AATATGTGGATGCTTACATTTCTGAA 57.476 30.769 0.00 0.00 38.41 3.02
2896 2966 5.885230 TGTGGATGCTTACATTTCTGAAG 57.115 39.130 0.00 0.00 36.35 3.02
2897 2967 5.316167 TGTGGATGCTTACATTTCTGAAGT 58.684 37.500 0.00 0.00 36.35 3.01
2898 2968 5.769662 TGTGGATGCTTACATTTCTGAAGTT 59.230 36.000 0.00 0.00 36.35 2.66
2899 2969 6.265196 TGTGGATGCTTACATTTCTGAAGTTT 59.735 34.615 0.00 0.00 36.35 2.66
2900 2970 6.583806 GTGGATGCTTACATTTCTGAAGTTTG 59.416 38.462 0.00 0.00 36.35 2.93
2901 2971 5.574443 GGATGCTTACATTTCTGAAGTTTGC 59.426 40.000 0.00 0.00 36.35 3.68
2902 2972 5.772825 TGCTTACATTTCTGAAGTTTGCT 57.227 34.783 0.00 0.00 0.00 3.91
2903 2973 6.147864 TGCTTACATTTCTGAAGTTTGCTT 57.852 33.333 0.00 0.00 37.71 3.91
2904 2974 6.572519 TGCTTACATTTCTGAAGTTTGCTTT 58.427 32.000 0.00 0.00 34.61 3.51
2905 2975 6.476380 TGCTTACATTTCTGAAGTTTGCTTTG 59.524 34.615 0.00 0.00 34.61 2.77
2906 2976 6.562825 GCTTACATTTCTGAAGTTTGCTTTGC 60.563 38.462 0.00 0.00 34.61 3.68
2907 2977 5.014808 ACATTTCTGAAGTTTGCTTTGCT 57.985 34.783 0.00 0.00 34.61 3.91
2908 2978 6.147864 ACATTTCTGAAGTTTGCTTTGCTA 57.852 33.333 0.00 0.00 34.61 3.49
2909 2979 6.211515 ACATTTCTGAAGTTTGCTTTGCTAG 58.788 36.000 0.00 0.00 34.61 3.42
2910 2980 6.039717 ACATTTCTGAAGTTTGCTTTGCTAGA 59.960 34.615 0.00 0.00 34.61 2.43
2911 2981 5.424121 TTCTGAAGTTTGCTTTGCTAGAC 57.576 39.130 0.00 0.00 34.61 2.59
2912 2982 4.450976 TCTGAAGTTTGCTTTGCTAGACA 58.549 39.130 0.00 0.00 34.61 3.41
2913 2983 4.273480 TCTGAAGTTTGCTTTGCTAGACAC 59.727 41.667 0.00 0.00 34.61 3.67
2914 2984 3.944650 TGAAGTTTGCTTTGCTAGACACA 59.055 39.130 0.00 0.00 34.61 3.72
2915 2985 4.580167 TGAAGTTTGCTTTGCTAGACACAT 59.420 37.500 0.00 0.00 34.61 3.21
2916 2986 4.756084 AGTTTGCTTTGCTAGACACATC 57.244 40.909 0.00 0.00 0.00 3.06
2917 2987 4.392940 AGTTTGCTTTGCTAGACACATCT 58.607 39.130 0.00 0.00 39.15 2.90
2918 2988 4.214971 AGTTTGCTTTGCTAGACACATCTG 59.785 41.667 0.00 0.00 36.29 2.90
2919 2989 2.079158 TGCTTTGCTAGACACATCTGC 58.921 47.619 0.00 0.00 36.29 4.26
2920 2990 1.399791 GCTTTGCTAGACACATCTGCC 59.600 52.381 0.00 0.00 36.29 4.85
2921 2991 2.703416 CTTTGCTAGACACATCTGCCA 58.297 47.619 0.00 0.00 36.29 4.92
2922 2992 3.276857 CTTTGCTAGACACATCTGCCAT 58.723 45.455 0.00 0.00 36.29 4.40
2923 2993 2.320745 TGCTAGACACATCTGCCATG 57.679 50.000 0.00 0.00 36.29 3.66
2924 2994 0.942962 GCTAGACACATCTGCCATGC 59.057 55.000 0.00 0.00 36.29 4.06
2925 2995 1.744798 GCTAGACACATCTGCCATGCA 60.745 52.381 0.00 0.00 36.29 3.96
2926 2996 2.847441 CTAGACACATCTGCCATGCAT 58.153 47.619 0.00 0.00 38.13 3.96
2927 2997 1.389555 AGACACATCTGCCATGCATG 58.610 50.000 20.19 20.19 38.13 4.06
2928 2998 1.100510 GACACATCTGCCATGCATGT 58.899 50.000 24.58 4.63 38.13 3.21
2929 2999 1.475280 GACACATCTGCCATGCATGTT 59.525 47.619 24.58 2.08 38.13 2.71
2930 3000 1.897133 ACACATCTGCCATGCATGTTT 59.103 42.857 24.58 2.42 38.13 2.83
2931 3001 3.090790 ACACATCTGCCATGCATGTTTA 58.909 40.909 24.58 9.84 38.13 2.01
2932 3002 3.510753 ACACATCTGCCATGCATGTTTAA 59.489 39.130 24.58 8.54 38.13 1.52
2933 3003 4.109766 CACATCTGCCATGCATGTTTAAG 58.890 43.478 24.58 15.34 38.13 1.85
2934 3004 4.018490 ACATCTGCCATGCATGTTTAAGA 58.982 39.130 24.58 19.44 38.13 2.10
2935 3005 4.097437 ACATCTGCCATGCATGTTTAAGAG 59.903 41.667 24.58 15.19 38.13 2.85
2936 3006 3.954200 TCTGCCATGCATGTTTAAGAGA 58.046 40.909 24.58 12.65 38.13 3.10
2937 3007 3.943381 TCTGCCATGCATGTTTAAGAGAG 59.057 43.478 24.58 7.60 38.13 3.20
2938 3008 3.943381 CTGCCATGCATGTTTAAGAGAGA 59.057 43.478 24.58 0.00 38.13 3.10
2939 3009 3.943381 TGCCATGCATGTTTAAGAGAGAG 59.057 43.478 24.58 6.39 31.71 3.20
2940 3010 4.194640 GCCATGCATGTTTAAGAGAGAGA 58.805 43.478 24.58 0.00 0.00 3.10
2941 3011 4.272991 GCCATGCATGTTTAAGAGAGAGAG 59.727 45.833 24.58 5.77 0.00 3.20
2942 3012 5.668471 CCATGCATGTTTAAGAGAGAGAGA 58.332 41.667 24.58 0.00 0.00 3.10
2943 3013 5.754406 CCATGCATGTTTAAGAGAGAGAGAG 59.246 44.000 24.58 0.00 0.00 3.20
2944 3014 6.406737 CCATGCATGTTTAAGAGAGAGAGAGA 60.407 42.308 24.58 0.00 0.00 3.10
2945 3015 6.206395 TGCATGTTTAAGAGAGAGAGAGAG 57.794 41.667 0.00 0.00 0.00 3.20
2946 3016 5.948758 TGCATGTTTAAGAGAGAGAGAGAGA 59.051 40.000 0.00 0.00 0.00 3.10
2947 3017 6.095300 TGCATGTTTAAGAGAGAGAGAGAGAG 59.905 42.308 0.00 0.00 0.00 3.20
2948 3018 6.318648 GCATGTTTAAGAGAGAGAGAGAGAGA 59.681 42.308 0.00 0.00 0.00 3.10
2949 3019 7.467811 GCATGTTTAAGAGAGAGAGAGAGAGAG 60.468 44.444 0.00 0.00 0.00 3.20
2950 3020 7.252612 TGTTTAAGAGAGAGAGAGAGAGAGA 57.747 40.000 0.00 0.00 0.00 3.10
2951 3021 7.331026 TGTTTAAGAGAGAGAGAGAGAGAGAG 58.669 42.308 0.00 0.00 0.00 3.20
3250 3320 1.462283 CTCTGTGTGTTTCTGATGCCG 59.538 52.381 0.00 0.00 0.00 5.69
3264 3334 0.743688 ATGCCGTGTGTTTGCAAAGA 59.256 45.000 13.26 8.87 38.69 2.52
3332 3402 4.435425 CAAATGGGCTTCATGTGTAATGG 58.565 43.478 0.00 0.00 36.55 3.16
3333 3403 2.142356 TGGGCTTCATGTGTAATGGG 57.858 50.000 0.00 0.00 0.00 4.00
3334 3404 0.746659 GGGCTTCATGTGTAATGGGC 59.253 55.000 0.00 0.00 0.00 5.36
3335 3405 1.473258 GGCTTCATGTGTAATGGGCA 58.527 50.000 0.00 0.00 0.00 5.36
3368 3466 5.450137 GCTCATCCATTCAGATTCCAAACAG 60.450 44.000 0.00 0.00 0.00 3.16
3369 3467 4.951715 TCATCCATTCAGATTCCAAACAGG 59.048 41.667 0.00 0.00 39.47 4.00
3387 3490 2.025887 CAGGAAGCCCAGACCTTGTTAT 60.026 50.000 0.00 0.00 33.88 1.89
3402 3505 8.718656 AGACCTTGTTATAATCTGATTAGGCTT 58.281 33.333 14.76 2.12 0.00 4.35
3403 3506 8.682936 ACCTTGTTATAATCTGATTAGGCTTG 57.317 34.615 14.76 4.81 0.00 4.01
3422 3525 4.438472 GCTTGTGTAACTAGAGAGTACCCG 60.438 50.000 0.00 0.00 42.45 5.28
3424 3527 4.655963 TGTGTAACTAGAGAGTACCCGTT 58.344 43.478 0.00 0.00 38.04 4.44
3430 3533 6.696441 AACTAGAGAGTACCCGTTAATGAG 57.304 41.667 0.00 0.00 33.58 2.90
3461 3564 0.961019 TGGTGCTTTGCTTCATCACC 59.039 50.000 2.99 2.99 45.43 4.02
3482 3585 6.834451 TCACCGAAGAGTTTCTATCCTAGAAT 59.166 38.462 0.00 0.00 43.72 2.40
3483 3586 7.997223 TCACCGAAGAGTTTCTATCCTAGAATA 59.003 37.037 0.00 0.00 43.72 1.75
3484 3587 8.293867 CACCGAAGAGTTTCTATCCTAGAATAG 58.706 40.741 0.00 0.00 43.72 1.73
3485 3588 8.219178 ACCGAAGAGTTTCTATCCTAGAATAGA 58.781 37.037 0.00 0.00 42.77 1.98
3486 3589 9.069082 CCGAAGAGTTTCTATCCTAGAATAGAA 57.931 37.037 7.30 7.30 42.77 2.10
3527 3630 8.777865 TTCATTCCTGTGACAATCTTAACTAG 57.222 34.615 0.00 0.00 0.00 2.57
3529 3634 9.031537 TCATTCCTGTGACAATCTTAACTAGTA 57.968 33.333 0.00 0.00 0.00 1.82
3540 3645 9.046296 ACAATCTTAACTAGTATATGCTGTTGC 57.954 33.333 3.24 0.00 40.20 4.17
3546 3651 0.588252 GTATATGCTGTTGCCCTGCG 59.412 55.000 0.00 0.00 40.64 5.18
3547 3652 0.467804 TATATGCTGTTGCCCTGCGA 59.532 50.000 0.00 0.00 40.64 5.10
3548 3653 0.816825 ATATGCTGTTGCCCTGCGAG 60.817 55.000 0.00 0.00 40.64 5.03
3549 3654 1.898330 TATGCTGTTGCCCTGCGAGA 61.898 55.000 0.00 0.00 40.64 4.04
3550 3655 3.123620 GCTGTTGCCCTGCGAGAG 61.124 66.667 0.00 0.00 36.55 3.20
3551 3656 2.435586 CTGTTGCCCTGCGAGAGG 60.436 66.667 0.00 0.00 42.38 3.69
3569 3674 2.496942 GGCACCATCTGAACCCATG 58.503 57.895 0.00 0.00 0.00 3.66
3570 3675 1.039233 GGCACCATCTGAACCCATGG 61.039 60.000 4.14 4.14 44.68 3.66
3571 3676 1.039233 GCACCATCTGAACCCATGGG 61.039 60.000 30.23 30.23 43.59 4.00
3572 3677 1.039233 CACCATCTGAACCCATGGGC 61.039 60.000 31.73 16.20 43.59 5.36
3573 3678 1.307309 CCATCTGAACCCATGGGCA 59.693 57.895 31.73 20.09 36.62 5.36
3574 3679 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.000 31.73 20.35 36.62 4.40
3575 3680 1.145531 CCATCTGAACCCATGGGCATA 59.854 52.381 31.73 14.38 36.62 3.14
3576 3681 2.225192 CCATCTGAACCCATGGGCATAT 60.225 50.000 31.73 16.01 36.62 1.78
3577 3682 2.662535 TCTGAACCCATGGGCATATG 57.337 50.000 31.73 16.78 39.32 1.78
3578 3683 0.963962 CTGAACCCATGGGCATATGC 59.036 55.000 31.73 19.79 39.32 3.14
3579 3684 0.261109 TGAACCCATGGGCATATGCA 59.739 50.000 31.73 13.55 44.36 3.96
3580 3685 0.675633 GAACCCATGGGCATATGCAC 59.324 55.000 31.73 25.88 46.69 4.57
3581 3686 0.760189 AACCCATGGGCATATGCACC 60.760 55.000 31.73 23.82 45.73 5.01
3582 3687 1.909781 CCCATGGGCATATGCACCC 60.910 63.158 26.74 19.95 45.73 4.61
3586 3691 4.684623 GGGCATATGCACCCACTT 57.315 55.556 28.07 0.00 46.22 3.16
3587 3692 2.900547 GGGCATATGCACCCACTTT 58.099 52.632 28.07 0.00 46.22 2.66
3588 3693 1.194218 GGGCATATGCACCCACTTTT 58.806 50.000 28.07 0.00 46.22 2.27
3589 3694 1.136891 GGGCATATGCACCCACTTTTC 59.863 52.381 28.07 7.31 46.22 2.29
3590 3695 1.824230 GGCATATGCACCCACTTTTCA 59.176 47.619 28.07 0.00 44.36 2.69
3591 3696 2.431782 GGCATATGCACCCACTTTTCAT 59.568 45.455 28.07 0.00 44.36 2.57
3592 3697 3.636300 GGCATATGCACCCACTTTTCATA 59.364 43.478 28.07 0.00 44.36 2.15
3593 3698 4.099266 GGCATATGCACCCACTTTTCATAA 59.901 41.667 28.07 0.00 44.36 1.90
3594 3699 5.395103 GGCATATGCACCCACTTTTCATAAA 60.395 40.000 28.07 0.00 44.36 1.40
3595 3700 6.105333 GCATATGCACCCACTTTTCATAAAA 58.895 36.000 22.84 0.00 41.59 1.52
3596 3701 6.762661 GCATATGCACCCACTTTTCATAAAAT 59.237 34.615 22.84 0.00 41.59 1.82
3597 3702 7.254522 GCATATGCACCCACTTTTCATAAAATG 60.255 37.037 22.84 0.00 41.59 2.32
3598 3703 4.314121 TGCACCCACTTTTCATAAAATGC 58.686 39.130 0.00 0.00 33.96 3.56
3599 3704 4.202295 TGCACCCACTTTTCATAAAATGCA 60.202 37.500 6.35 6.35 38.38 3.96
3600 3705 4.937015 GCACCCACTTTTCATAAAATGCAT 59.063 37.500 0.00 0.00 33.71 3.96
3601 3706 5.412286 GCACCCACTTTTCATAAAATGCATT 59.588 36.000 5.99 5.99 33.71 3.56
3602 3707 6.072563 GCACCCACTTTTCATAAAATGCATTT 60.073 34.615 18.99 18.99 33.71 2.32
3603 3708 7.521910 GCACCCACTTTTCATAAAATGCATTTT 60.522 33.333 33.26 33.26 42.21 1.82
3604 3709 8.997323 CACCCACTTTTCATAAAATGCATTTTA 58.003 29.630 34.85 34.85 43.80 1.52
3605 3710 9.566432 ACCCACTTTTCATAAAATGCATTTTAA 57.434 25.926 35.79 24.51 43.16 1.52
3607 3712 9.545611 CCACTTTTCATAAAATGCATTTTAAGC 57.454 29.630 35.79 0.00 43.16 3.09
3610 3715 9.253275 CTTTTCATAAAATGCATTTTAAGCACG 57.747 29.630 35.79 24.47 45.95 5.34
3611 3716 7.881643 TTCATAAAATGCATTTTAAGCACGT 57.118 28.000 35.79 22.04 45.95 4.49
3612 3717 7.881643 TCATAAAATGCATTTTAAGCACGTT 57.118 28.000 35.79 21.46 45.95 3.99
3613 3718 7.727955 TCATAAAATGCATTTTAAGCACGTTG 58.272 30.769 35.79 28.38 45.95 4.10
3614 3719 5.982465 AAAATGCATTTTAAGCACGTTGT 57.018 30.435 31.00 7.14 45.95 3.32
3615 3720 8.642885 CATAAAATGCATTTTAAGCACGTTGTA 58.357 29.630 35.79 19.03 45.95 2.41
3616 3721 7.470289 AAAATGCATTTTAAGCACGTTGTAA 57.530 28.000 31.00 0.00 45.95 2.41
3617 3722 7.470289 AAATGCATTTTAAGCACGTTGTAAA 57.530 28.000 18.99 0.00 45.95 2.01
3618 3723 7.470289 AATGCATTTTAAGCACGTTGTAAAA 57.530 28.000 5.99 9.16 45.95 1.52
3619 3724 7.650834 ATGCATTTTAAGCACGTTGTAAAAT 57.349 28.000 11.89 11.89 45.95 1.82
3620 3725 8.749841 ATGCATTTTAAGCACGTTGTAAAATA 57.250 26.923 15.17 6.64 45.95 1.40
3621 3726 8.749841 TGCATTTTAAGCACGTTGTAAAATAT 57.250 26.923 15.17 0.64 36.00 1.28
3622 3727 8.855279 TGCATTTTAAGCACGTTGTAAAATATC 58.145 29.630 15.17 12.09 36.00 1.63
3623 3728 8.855279 GCATTTTAAGCACGTTGTAAAATATCA 58.145 29.630 15.17 0.00 36.00 2.15
3653 3758 9.853555 AAATCAAAAGAAAATATCACGCATACA 57.146 25.926 0.00 0.00 0.00 2.29
3655 3760 8.839947 TCAAAAGAAAATATCACGCATACATG 57.160 30.769 0.00 0.00 0.00 3.21
3656 3761 8.458052 TCAAAAGAAAATATCACGCATACATGT 58.542 29.630 2.69 2.69 0.00 3.21
3657 3762 9.075519 CAAAAGAAAATATCACGCATACATGTT 57.924 29.630 2.30 0.00 0.00 2.71
3658 3763 9.638239 AAAAGAAAATATCACGCATACATGTTT 57.362 25.926 2.30 0.00 0.00 2.83
3659 3764 8.619146 AAGAAAATATCACGCATACATGTTTG 57.381 30.769 2.30 7.95 0.00 2.93
3660 3765 6.692681 AGAAAATATCACGCATACATGTTTGC 59.307 34.615 25.81 25.81 34.82 3.68
3661 3766 5.497635 AATATCACGCATACATGTTTGCA 57.502 34.783 31.57 18.40 37.38 4.08
3662 3767 3.846423 ATCACGCATACATGTTTGCAA 57.154 38.095 31.57 20.47 37.38 4.08
3663 3768 3.632855 TCACGCATACATGTTTGCAAA 57.367 38.095 31.57 18.14 37.38 3.68
3664 3769 4.171663 TCACGCATACATGTTTGCAAAT 57.828 36.364 31.57 18.53 37.38 2.32
3665 3770 3.919197 TCACGCATACATGTTTGCAAATG 59.081 39.130 31.57 25.90 37.38 2.32
3666 3771 3.674281 CACGCATACATGTTTGCAAATGT 59.326 39.130 31.57 21.65 40.13 2.71
3667 3772 3.674281 ACGCATACATGTTTGCAAATGTG 59.326 39.130 31.57 22.67 37.57 3.21
3668 3773 3.674281 CGCATACATGTTTGCAAATGTGT 59.326 39.130 31.57 25.57 37.57 3.72
3669 3774 4.433152 CGCATACATGTTTGCAAATGTGTG 60.433 41.667 31.57 25.96 44.27 3.82
3670 3775 4.448395 GCATACATGTTTGCAAATGTGTGT 59.552 37.500 28.30 23.14 43.70 3.72
3671 3776 5.632764 GCATACATGTTTGCAAATGTGTGTA 59.367 36.000 28.30 24.50 43.70 2.90
3672 3777 6.399880 GCATACATGTTTGCAAATGTGTGTAC 60.400 38.462 28.30 19.33 43.70 2.90
3673 3778 4.041049 ACATGTTTGCAAATGTGTGTACG 58.959 39.130 23.30 7.19 35.71 3.67
3674 3779 2.455032 TGTTTGCAAATGTGTGTACGC 58.545 42.857 16.21 0.00 0.00 4.42
3675 3780 1.446465 GTTTGCAAATGTGTGTACGCG 59.554 47.619 16.21 3.53 0.00 6.01
3676 3781 0.040870 TTGCAAATGTGTGTACGCGG 60.041 50.000 12.47 0.00 0.00 6.46
3677 3782 1.795962 GCAAATGTGTGTACGCGGC 60.796 57.895 12.47 3.05 0.00 6.53
3678 3783 1.571953 CAAATGTGTGTACGCGGCA 59.428 52.632 12.47 6.26 0.00 5.69
3679 3784 0.724453 CAAATGTGTGTACGCGGCAC 60.724 55.000 23.12 23.12 37.37 5.01
3680 3785 1.160946 AAATGTGTGTACGCGGCACA 61.161 50.000 26.84 26.84 45.48 4.57
3681 3786 1.160946 AATGTGTGTACGCGGCACAA 61.161 50.000 30.30 22.51 46.65 3.33
3682 3787 1.160946 ATGTGTGTACGCGGCACAAA 61.161 50.000 30.30 27.23 46.65 2.83
3683 3788 1.083015 GTGTGTACGCGGCACAAAG 60.083 57.895 30.30 0.00 46.65 2.77
3684 3789 1.521906 TGTGTACGCGGCACAAAGT 60.522 52.632 27.88 1.76 42.96 2.66
3685 3790 1.090625 TGTGTACGCGGCACAAAGTT 61.091 50.000 27.88 1.05 42.96 2.66
3686 3791 0.028374 GTGTACGCGGCACAAAGTTT 59.972 50.000 24.34 0.00 36.88 2.66
3687 3792 0.733729 TGTACGCGGCACAAAGTTTT 59.266 45.000 12.47 0.00 0.00 2.43
3688 3793 1.938577 TGTACGCGGCACAAAGTTTTA 59.061 42.857 12.47 0.00 0.00 1.52
3689 3794 2.548904 TGTACGCGGCACAAAGTTTTAT 59.451 40.909 12.47 0.00 0.00 1.40
3690 3795 2.044888 ACGCGGCACAAAGTTTTATG 57.955 45.000 12.47 0.00 0.00 1.90
3691 3796 1.604755 ACGCGGCACAAAGTTTTATGA 59.395 42.857 12.47 0.00 0.00 2.15
3692 3797 2.033550 ACGCGGCACAAAGTTTTATGAA 59.966 40.909 12.47 0.00 0.00 2.57
3693 3798 3.046390 CGCGGCACAAAGTTTTATGAAA 58.954 40.909 0.00 0.00 0.00 2.69
3694 3799 3.487574 CGCGGCACAAAGTTTTATGAAAA 59.512 39.130 0.00 0.00 0.00 2.29
3695 3800 4.374906 CGCGGCACAAAGTTTTATGAAAAG 60.375 41.667 0.00 0.00 0.00 2.27
3696 3801 4.742659 GCGGCACAAAGTTTTATGAAAAGA 59.257 37.500 0.00 0.00 0.00 2.52
3697 3802 5.405269 GCGGCACAAAGTTTTATGAAAAGAT 59.595 36.000 0.00 0.00 0.00 2.40
3698 3803 6.616260 GCGGCACAAAGTTTTATGAAAAGATG 60.616 38.462 0.00 0.00 0.00 2.90
3699 3804 6.420604 CGGCACAAAGTTTTATGAAAAGATGT 59.579 34.615 1.53 0.00 0.00 3.06
3700 3805 7.358352 CGGCACAAAGTTTTATGAAAAGATGTC 60.358 37.037 1.53 0.00 0.00 3.06
3701 3806 7.653311 GGCACAAAGTTTTATGAAAAGATGTCT 59.347 33.333 1.53 0.00 0.00 3.41
3702 3807 9.034544 GCACAAAGTTTTATGAAAAGATGTCTT 57.965 29.630 1.53 0.00 37.91 3.01
3715 3820 6.908870 AAAGATGTCTTTTTGTTTTGCCTC 57.091 33.333 2.25 0.00 43.07 4.70
3716 3821 4.948847 AGATGTCTTTTTGTTTTGCCTCC 58.051 39.130 0.00 0.00 0.00 4.30
3717 3822 3.157932 TGTCTTTTTGTTTTGCCTCCG 57.842 42.857 0.00 0.00 0.00 4.63
3718 3823 2.494073 TGTCTTTTTGTTTTGCCTCCGT 59.506 40.909 0.00 0.00 0.00 4.69
3719 3824 3.695060 TGTCTTTTTGTTTTGCCTCCGTA 59.305 39.130 0.00 0.00 0.00 4.02
3720 3825 4.158025 TGTCTTTTTGTTTTGCCTCCGTAA 59.842 37.500 0.00 0.00 0.00 3.18
3721 3826 5.103687 GTCTTTTTGTTTTGCCTCCGTAAA 58.896 37.500 0.00 0.00 0.00 2.01
3722 3827 5.577554 GTCTTTTTGTTTTGCCTCCGTAAAA 59.422 36.000 0.00 0.00 32.03 1.52
3723 3828 6.091034 GTCTTTTTGTTTTGCCTCCGTAAAAA 59.909 34.615 0.00 0.00 35.67 1.94
3746 3851 9.651913 AAAAAGACAAATTTCAGTGCTTCTAAA 57.348 25.926 0.00 0.00 0.00 1.85
3747 3852 9.822185 AAAAGACAAATTTCAGTGCTTCTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
3750 3855 9.289782 AGACAAATTTCAGTGCTTCTAAATAGT 57.710 29.630 0.00 0.00 0.00 2.12
3751 3856 9.334693 GACAAATTTCAGTGCTTCTAAATAGTG 57.665 33.333 0.00 0.00 0.00 2.74
3752 3857 8.850156 ACAAATTTCAGTGCTTCTAAATAGTGT 58.150 29.630 0.00 0.00 0.00 3.55
3753 3858 9.683069 CAAATTTCAGTGCTTCTAAATAGTGTT 57.317 29.630 0.00 0.00 0.00 3.32
3755 3860 9.899226 AATTTCAGTGCTTCTAAATAGTGTTTC 57.101 29.630 0.00 0.00 0.00 2.78
3756 3861 8.445275 TTTCAGTGCTTCTAAATAGTGTTTCA 57.555 30.769 0.00 0.00 0.00 2.69
3757 3862 7.421530 TCAGTGCTTCTAAATAGTGTTTCAC 57.578 36.000 0.00 0.00 34.10 3.18
3758 3863 6.145534 TCAGTGCTTCTAAATAGTGTTTCACG 59.854 38.462 0.00 0.00 39.64 4.35
3759 3864 6.145534 CAGTGCTTCTAAATAGTGTTTCACGA 59.854 38.462 0.00 0.00 39.64 4.35
3760 3865 6.145696 AGTGCTTCTAAATAGTGTTTCACGAC 59.854 38.462 0.00 0.00 39.64 4.34
3761 3866 5.986741 TGCTTCTAAATAGTGTTTCACGACA 59.013 36.000 0.00 0.00 39.64 4.35
3762 3867 6.649141 TGCTTCTAAATAGTGTTTCACGACAT 59.351 34.615 0.00 0.00 39.64 3.06
3763 3868 7.815549 TGCTTCTAAATAGTGTTTCACGACATA 59.184 33.333 0.00 0.00 39.64 2.29
3764 3869 8.653338 GCTTCTAAATAGTGTTTCACGACATAA 58.347 33.333 0.00 0.00 39.64 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 118 1.749638 GAGCGGAGGGAGAGACGAA 60.750 63.158 0.00 0.00 0.00 3.85
382 406 1.806568 GTCGACTCCTGCTCCTCTG 59.193 63.158 8.70 0.00 0.00 3.35
428 452 1.071699 TCTAAGGACAACCACAGCCAC 59.928 52.381 0.00 0.00 38.94 5.01
437 461 3.263261 GCCAGCTAGTTCTAAGGACAAC 58.737 50.000 0.00 0.00 0.00 3.32
467 491 0.248702 GGAGCTAGCTCGAGAAACGG 60.249 60.000 32.78 1.83 43.59 4.44
510 542 2.359169 GGCTCGGGATCTCACCACA 61.359 63.158 0.00 0.00 0.00 4.17
512 544 3.147595 CGGCTCGGGATCTCACCA 61.148 66.667 0.00 0.00 0.00 4.17
513 545 4.593864 GCGGCTCGGGATCTCACC 62.594 72.222 0.00 0.00 0.00 4.02
566 598 0.318441 TCTGACCAAGAGGAGTTGCG 59.682 55.000 0.00 0.00 38.69 4.85
572 604 4.947883 TCCTAGATTTCTGACCAAGAGGA 58.052 43.478 0.00 0.00 35.91 3.71
609 641 5.590259 ACATGTACAAATGCATCCTAGGTTC 59.410 40.000 9.08 0.00 0.00 3.62
708 740 0.947244 CAAGTGAGTGAACTGGGCAC 59.053 55.000 0.00 0.00 36.53 5.01
778 811 1.273327 GATCACAGGGGCAAAACAAGG 59.727 52.381 0.00 0.00 0.00 3.61
787 820 1.615392 GCAAATATGGATCACAGGGGC 59.385 52.381 0.00 0.00 0.00 5.80
898 952 0.467290 AAAAGGAAGTGCGAAGGCCA 60.467 50.000 5.01 0.00 38.85 5.36
931 985 5.070685 GGAAAAGGAGTGGTACATTTCACT 58.929 41.667 2.57 2.57 45.70 3.41
933 987 5.319043 AGGAAAAGGAGTGGTACATTTCA 57.681 39.130 0.00 0.00 44.52 2.69
945 999 5.296151 TCCATGCAGTATAGGAAAAGGAG 57.704 43.478 0.00 0.00 0.00 3.69
956 1011 5.106038 CGGCATCATTATTTCCATGCAGTAT 60.106 40.000 5.21 0.00 42.94 2.12
967 1022 5.806502 CACAACATGTTCGGCATCATTATTT 59.193 36.000 8.48 0.00 35.19 1.40
970 1025 4.006319 TCACAACATGTTCGGCATCATTA 58.994 39.130 8.48 0.00 35.19 1.90
971 1026 2.819019 TCACAACATGTTCGGCATCATT 59.181 40.909 8.48 0.00 35.19 2.57
979 1034 2.156697 TGTACGCATCACAACATGTTCG 59.843 45.455 8.48 10.67 0.00 3.95
980 1035 3.804518 TGTACGCATCACAACATGTTC 57.195 42.857 8.48 0.00 0.00 3.18
981 1036 4.082274 CATGTACGCATCACAACATGTT 57.918 40.909 4.92 4.92 42.62 2.71
1067 1122 1.348775 GGGCATGGCTAACTCTCCCT 61.349 60.000 19.78 0.00 0.00 4.20
1118 1173 1.066071 GTGCTAACCAGAACTCCTCCC 60.066 57.143 0.00 0.00 0.00 4.30
1157 1212 1.835494 ACATCTGCTTCAGCTTGCAT 58.165 45.000 6.31 0.00 42.66 3.96
1271 1326 3.944015 GGCTGCAAATTCAGATAGTCAGT 59.056 43.478 0.50 0.00 36.19 3.41
1489 1545 8.400947 GCAATGATAGTTAATGACATCAACTGT 58.599 33.333 13.41 7.28 42.15 3.55
2183 2248 1.070445 CTTAGCTGCTGGATCTCCCTG 59.930 57.143 13.43 0.00 36.99 4.45
2231 2296 2.989253 TCGCGGGAGAGTGCTTCA 60.989 61.111 6.13 0.00 0.00 3.02
2567 2634 3.150848 GCTACATTAGCCCTTGCAAAC 57.849 47.619 0.00 0.00 45.95 2.93
2582 2649 3.000041 CGACACCAATTTGCTAGCTACA 59.000 45.455 17.23 0.00 0.00 2.74
2602 2669 2.472695 TTCCTGTGAATCCCTTGACG 57.527 50.000 0.00 0.00 0.00 4.35
2661 2728 8.690203 TGAGAGGAAAGAAACAAATCAATGTA 57.310 30.769 0.00 0.00 32.02 2.29
2662 2729 7.286316 ACTGAGAGGAAAGAAACAAATCAATGT 59.714 33.333 0.00 0.00 34.24 2.71
2663 2730 7.655490 ACTGAGAGGAAAGAAACAAATCAATG 58.345 34.615 0.00 0.00 0.00 2.82
2664 2731 7.830099 ACTGAGAGGAAAGAAACAAATCAAT 57.170 32.000 0.00 0.00 0.00 2.57
2666 2733 7.557719 AGAAACTGAGAGGAAAGAAACAAATCA 59.442 33.333 0.00 0.00 0.00 2.57
2667 2734 7.859875 CAGAAACTGAGAGGAAAGAAACAAATC 59.140 37.037 0.00 0.00 32.44 2.17
2668 2735 7.340487 ACAGAAACTGAGAGGAAAGAAACAAAT 59.660 33.333 5.76 0.00 35.18 2.32
2670 2737 6.180472 ACAGAAACTGAGAGGAAAGAAACAA 58.820 36.000 5.76 0.00 35.18 2.83
2671 2738 5.745227 ACAGAAACTGAGAGGAAAGAAACA 58.255 37.500 5.76 0.00 35.18 2.83
2672 2739 5.817816 TGACAGAAACTGAGAGGAAAGAAAC 59.182 40.000 5.76 0.00 35.18 2.78
2682 2750 3.565482 GCAACCAATGACAGAAACTGAGA 59.435 43.478 5.76 0.00 35.18 3.27
2691 2759 2.224606 ACACTGAGCAACCAATGACAG 58.775 47.619 0.00 0.00 39.32 3.51
2692 2760 2.221169 GACACTGAGCAACCAATGACA 58.779 47.619 0.00 0.00 0.00 3.58
2696 2764 2.936919 TCTGACACTGAGCAACCAAT 57.063 45.000 0.00 0.00 0.00 3.16
2729 2798 5.128663 AGCCCTAGCAACTGAAAAAGAAAAA 59.871 36.000 0.00 0.00 43.56 1.94
2730 2799 4.649218 AGCCCTAGCAACTGAAAAAGAAAA 59.351 37.500 0.00 0.00 43.56 2.29
2731 2800 4.215109 AGCCCTAGCAACTGAAAAAGAAA 58.785 39.130 0.00 0.00 43.56 2.52
2732 2801 3.832527 AGCCCTAGCAACTGAAAAAGAA 58.167 40.909 0.00 0.00 43.56 2.52
2733 2802 3.508845 AGCCCTAGCAACTGAAAAAGA 57.491 42.857 0.00 0.00 43.56 2.52
2734 2803 4.156739 CCTTAGCCCTAGCAACTGAAAAAG 59.843 45.833 0.00 0.00 43.56 2.27
2755 2824 6.374417 TCCAAGTTCAATCTAAAGCTACCT 57.626 37.500 0.00 0.00 0.00 3.08
2757 2826 7.550906 ACTCATCCAAGTTCAATCTAAAGCTAC 59.449 37.037 0.00 0.00 0.00 3.58
2758 2827 7.550551 CACTCATCCAAGTTCAATCTAAAGCTA 59.449 37.037 0.00 0.00 0.00 3.32
2759 2828 6.373774 CACTCATCCAAGTTCAATCTAAAGCT 59.626 38.462 0.00 0.00 0.00 3.74
2761 2830 7.678947 ACACTCATCCAAGTTCAATCTAAAG 57.321 36.000 0.00 0.00 0.00 1.85
2763 2832 6.998074 ACAACACTCATCCAAGTTCAATCTAA 59.002 34.615 0.00 0.00 0.00 2.10
2764 2833 6.533730 ACAACACTCATCCAAGTTCAATCTA 58.466 36.000 0.00 0.00 0.00 1.98
2765 2834 5.380043 ACAACACTCATCCAAGTTCAATCT 58.620 37.500 0.00 0.00 0.00 2.40
2766 2835 5.695851 ACAACACTCATCCAAGTTCAATC 57.304 39.130 0.00 0.00 0.00 2.67
2767 2836 6.061441 TGTACAACACTCATCCAAGTTCAAT 58.939 36.000 0.00 0.00 0.00 2.57
2768 2837 5.432645 TGTACAACACTCATCCAAGTTCAA 58.567 37.500 0.00 0.00 0.00 2.69
2771 2840 4.141482 ACCTGTACAACACTCATCCAAGTT 60.141 41.667 0.00 0.00 0.00 2.66
2774 2843 5.755409 ATACCTGTACAACACTCATCCAA 57.245 39.130 0.00 0.00 0.00 3.53
2790 2859 2.280628 GCCTCAAGACCGAAATACCTG 58.719 52.381 0.00 0.00 0.00 4.00
2795 2864 0.320374 TCACGCCTCAAGACCGAAAT 59.680 50.000 0.00 0.00 0.00 2.17
2802 2871 3.885724 TTACATGATCACGCCTCAAGA 57.114 42.857 0.00 0.00 0.00 3.02
2803 2872 3.873361 ACATTACATGATCACGCCTCAAG 59.127 43.478 0.00 0.00 0.00 3.02
2817 2887 3.473113 AAAAGAGGGGGCACATTACAT 57.527 42.857 0.00 0.00 0.00 2.29
2821 2891 1.359130 AGCTAAAAGAGGGGGCACATT 59.641 47.619 0.00 0.00 0.00 2.71
2823 2893 0.328258 GAGCTAAAAGAGGGGGCACA 59.672 55.000 0.00 0.00 0.00 4.57
2858 2928 1.670811 CCACATATTCGAAGCCACACC 59.329 52.381 3.35 0.00 0.00 4.16
2862 2932 2.158769 AGCATCCACATATTCGAAGCCA 60.159 45.455 3.35 0.00 0.00 4.75
2873 2943 5.948162 ACTTCAGAAATGTAAGCATCCACAT 59.052 36.000 0.00 0.00 36.96 3.21
2880 2950 5.772825 AGCAAACTTCAGAAATGTAAGCA 57.227 34.783 0.00 0.00 0.00 3.91
2882 2952 6.698766 AGCAAAGCAAACTTCAGAAATGTAAG 59.301 34.615 0.00 0.00 34.05 2.34
2885 2955 5.014808 AGCAAAGCAAACTTCAGAAATGT 57.985 34.783 0.00 0.00 34.05 2.71
2886 2956 6.361748 GTCTAGCAAAGCAAACTTCAGAAATG 59.638 38.462 0.00 0.00 34.05 2.32
2887 2957 6.039717 TGTCTAGCAAAGCAAACTTCAGAAAT 59.960 34.615 0.00 0.00 34.05 2.17
2889 2959 4.881273 TGTCTAGCAAAGCAAACTTCAGAA 59.119 37.500 0.00 0.00 34.05 3.02
2890 2960 4.273480 GTGTCTAGCAAAGCAAACTTCAGA 59.727 41.667 0.00 0.00 34.05 3.27
2891 2961 4.035558 TGTGTCTAGCAAAGCAAACTTCAG 59.964 41.667 0.00 0.00 34.05 3.02
2892 2962 3.944650 TGTGTCTAGCAAAGCAAACTTCA 59.055 39.130 0.00 0.00 34.05 3.02
2893 2963 4.552166 TGTGTCTAGCAAAGCAAACTTC 57.448 40.909 0.00 0.00 34.05 3.01
2895 2965 4.214971 CAGATGTGTCTAGCAAAGCAAACT 59.785 41.667 0.00 0.00 32.09 2.66
2896 2966 4.470462 CAGATGTGTCTAGCAAAGCAAAC 58.530 43.478 0.00 0.00 32.09 2.93
2897 2967 3.058016 GCAGATGTGTCTAGCAAAGCAAA 60.058 43.478 0.00 0.00 32.09 3.68
2898 2968 2.485426 GCAGATGTGTCTAGCAAAGCAA 59.515 45.455 0.00 0.00 32.09 3.91
2899 2969 2.079158 GCAGATGTGTCTAGCAAAGCA 58.921 47.619 0.00 0.00 32.09 3.91
2900 2970 1.399791 GGCAGATGTGTCTAGCAAAGC 59.600 52.381 0.00 0.00 33.17 3.51
2901 2971 2.703416 TGGCAGATGTGTCTAGCAAAG 58.297 47.619 0.00 0.00 33.17 2.77
2902 2972 2.857186 TGGCAGATGTGTCTAGCAAA 57.143 45.000 0.00 0.00 33.17 3.68
2903 2973 2.635714 CATGGCAGATGTGTCTAGCAA 58.364 47.619 0.00 0.00 33.17 3.91
2904 2974 1.744798 GCATGGCAGATGTGTCTAGCA 60.745 52.381 6.78 0.00 33.17 3.49
2905 2975 0.942962 GCATGGCAGATGTGTCTAGC 59.057 55.000 0.00 0.00 32.09 3.42
2906 2976 2.320745 TGCATGGCAGATGTGTCTAG 57.679 50.000 0.00 0.00 33.32 2.43
2907 2977 2.092807 ACATGCATGGCAGATGTGTCTA 60.093 45.455 29.41 0.00 43.65 2.59
2908 2978 1.340697 ACATGCATGGCAGATGTGTCT 60.341 47.619 29.41 1.84 43.65 3.41
2909 2979 1.100510 ACATGCATGGCAGATGTGTC 58.899 50.000 29.41 0.00 43.65 3.67
2910 2980 1.552578 AACATGCATGGCAGATGTGT 58.447 45.000 29.41 4.73 43.65 3.72
2911 2981 2.665649 AAACATGCATGGCAGATGTG 57.334 45.000 29.41 4.03 43.65 3.21
2912 2982 4.018490 TCTTAAACATGCATGGCAGATGT 58.982 39.130 29.41 6.32 43.65 3.06
2913 2983 4.337274 TCTCTTAAACATGCATGGCAGATG 59.663 41.667 29.41 14.78 43.65 2.90
2914 2984 4.529897 TCTCTTAAACATGCATGGCAGAT 58.470 39.130 29.41 13.15 43.65 2.90
2915 2985 3.943381 CTCTCTTAAACATGCATGGCAGA 59.057 43.478 29.41 20.90 43.65 4.26
2916 2986 3.943381 TCTCTCTTAAACATGCATGGCAG 59.057 43.478 29.41 18.21 43.65 4.85
2917 2987 3.943381 CTCTCTCTTAAACATGCATGGCA 59.057 43.478 29.41 11.90 44.86 4.92
2918 2988 4.194640 TCTCTCTCTTAAACATGCATGGC 58.805 43.478 29.41 0.00 0.00 4.40
2919 2989 5.668471 TCTCTCTCTCTTAAACATGCATGG 58.332 41.667 29.41 12.19 0.00 3.66
2920 2990 6.571605 TCTCTCTCTCTCTTAAACATGCATG 58.428 40.000 25.09 25.09 0.00 4.06
2921 2991 6.606796 TCTCTCTCTCTCTCTTAAACATGCAT 59.393 38.462 0.00 0.00 0.00 3.96
2922 2992 5.948758 TCTCTCTCTCTCTCTTAAACATGCA 59.051 40.000 0.00 0.00 0.00 3.96
2923 2993 6.318648 TCTCTCTCTCTCTCTCTTAAACATGC 59.681 42.308 0.00 0.00 0.00 4.06
2924 2994 7.770433 TCTCTCTCTCTCTCTCTCTTAAACATG 59.230 40.741 0.00 0.00 0.00 3.21
2925 2995 7.861629 TCTCTCTCTCTCTCTCTCTTAAACAT 58.138 38.462 0.00 0.00 0.00 2.71
2926 2996 7.252612 TCTCTCTCTCTCTCTCTCTTAAACA 57.747 40.000 0.00 0.00 0.00 2.83
2927 2997 7.778470 CTCTCTCTCTCTCTCTCTCTTAAAC 57.222 44.000 0.00 0.00 0.00 2.01
3204 3274 4.531732 ACAAAGCCATTTCTCTCTCTCTCT 59.468 41.667 0.00 0.00 0.00 3.10
3205 3275 4.831107 ACAAAGCCATTTCTCTCTCTCTC 58.169 43.478 0.00 0.00 0.00 3.20
3206 3276 4.906747 ACAAAGCCATTTCTCTCTCTCT 57.093 40.909 0.00 0.00 0.00 3.10
3207 3277 5.704978 AGAAACAAAGCCATTTCTCTCTCTC 59.295 40.000 0.00 0.00 40.36 3.20
3208 3278 5.629125 AGAAACAAAGCCATTTCTCTCTCT 58.371 37.500 0.00 0.00 40.36 3.10
3209 3279 5.956068 AGAAACAAAGCCATTTCTCTCTC 57.044 39.130 0.00 0.00 40.36 3.20
3250 3320 3.832276 TGAACTGTCTTTGCAAACACAC 58.168 40.909 15.25 9.57 0.00 3.82
3264 3334 4.487714 TTTCTGGAGTGAACTGAACTGT 57.512 40.909 0.00 0.00 0.00 3.55
3329 3399 1.076485 GAGCTCCATTGGTGCCCAT 60.076 57.895 22.68 7.75 42.42 4.00
3330 3400 1.866483 ATGAGCTCCATTGGTGCCCA 61.866 55.000 22.68 18.95 42.42 5.36
3332 3402 1.105759 GGATGAGCTCCATTGGTGCC 61.106 60.000 22.68 15.63 44.26 5.01
3333 3403 2.412605 GGATGAGCTCCATTGGTGC 58.587 57.895 19.66 19.66 44.26 5.01
3343 3441 4.515028 TTGGAATCTGAATGGATGAGCT 57.485 40.909 0.00 0.00 0.00 4.09
3344 3442 4.400251 TGTTTGGAATCTGAATGGATGAGC 59.600 41.667 0.00 0.00 0.00 4.26
3368 3466 2.808906 ATAACAAGGTCTGGGCTTCC 57.191 50.000 0.00 0.00 0.00 3.46
3369 3467 5.529060 CAGATTATAACAAGGTCTGGGCTTC 59.471 44.000 5.47 0.00 34.21 3.86
3371 3469 4.721776 TCAGATTATAACAAGGTCTGGGCT 59.278 41.667 11.35 0.00 37.49 5.19
3377 3475 8.778358 CAAGCCTAATCAGATTATAACAAGGTC 58.222 37.037 3.19 0.11 0.00 3.85
3387 3490 9.197306 TCTAGTTACACAAGCCTAATCAGATTA 57.803 33.333 2.77 2.77 0.00 1.75
3402 3505 4.292186 ACGGGTACTCTCTAGTTACACA 57.708 45.455 0.00 0.00 37.15 3.72
3403 3506 6.743575 TTAACGGGTACTCTCTAGTTACAC 57.256 41.667 0.00 0.00 37.15 2.90
3422 3525 5.741388 CCAAGCAGGTATCACTCATTAAC 57.259 43.478 0.00 0.00 0.00 2.01
3483 3586 9.178758 GGAATGAAGGAAACATTACTACATTCT 57.821 33.333 1.27 0.00 40.08 2.40
3484 3587 9.178758 AGGAATGAAGGAAACATTACTACATTC 57.821 33.333 0.00 0.00 44.14 2.67
3485 3588 8.960591 CAGGAATGAAGGAAACATTACTACATT 58.039 33.333 0.00 0.00 44.14 2.71
3486 3589 8.109634 ACAGGAATGAAGGAAACATTACTACAT 58.890 33.333 0.00 0.00 44.14 2.29
3527 3630 0.588252 CGCAGGGCAACAGCATATAC 59.412 55.000 0.00 0.00 38.88 1.47
3529 3634 0.816825 CTCGCAGGGCAACAGCATAT 60.817 55.000 0.00 0.00 38.88 1.78
3546 3651 0.107459 GGTTCAGATGGTGCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
3547 3652 1.566298 GGGTTCAGATGGTGCCCTCT 61.566 60.000 0.00 0.00 36.49 3.69
3548 3653 1.077429 GGGTTCAGATGGTGCCCTC 60.077 63.158 0.00 0.00 36.49 4.30
3549 3654 1.217057 ATGGGTTCAGATGGTGCCCT 61.217 55.000 0.00 0.00 39.97 5.19
3550 3655 1.039233 CATGGGTTCAGATGGTGCCC 61.039 60.000 0.00 0.00 39.73 5.36
3551 3656 1.039233 CCATGGGTTCAGATGGTGCC 61.039 60.000 2.85 0.00 35.33 5.01
3552 3657 1.039233 CCCATGGGTTCAGATGGTGC 61.039 60.000 23.93 0.00 37.96 5.01
3553 3658 1.039233 GCCCATGGGTTCAGATGGTG 61.039 60.000 31.58 2.09 37.96 4.17
3554 3659 1.307647 GCCCATGGGTTCAGATGGT 59.692 57.895 31.58 0.00 37.96 3.55
3555 3660 0.105862 ATGCCCATGGGTTCAGATGG 60.106 55.000 31.58 3.44 39.18 3.51
3556 3661 2.662535 TATGCCCATGGGTTCAGATG 57.337 50.000 31.58 4.22 37.65 2.90
3557 3662 2.820485 GCATATGCCCATGGGTTCAGAT 60.820 50.000 31.58 20.71 37.65 2.90
3558 3663 1.479205 GCATATGCCCATGGGTTCAGA 60.479 52.381 31.58 19.37 37.65 3.27
3559 3664 0.963962 GCATATGCCCATGGGTTCAG 59.036 55.000 31.58 18.29 37.65 3.02
3560 3665 0.261109 TGCATATGCCCATGGGTTCA 59.739 50.000 31.58 21.99 41.18 3.18
3561 3666 0.675633 GTGCATATGCCCATGGGTTC 59.324 55.000 31.58 16.76 41.18 3.62
3562 3667 0.760189 GGTGCATATGCCCATGGGTT 60.760 55.000 31.58 21.23 41.18 4.11
3563 3668 1.152483 GGTGCATATGCCCATGGGT 60.152 57.895 31.58 15.92 41.18 4.51
3564 3669 1.909781 GGGTGCATATGCCCATGGG 60.910 63.158 27.87 27.87 44.23 4.00
3565 3670 3.781760 GGGTGCATATGCCCATGG 58.218 61.111 26.58 4.14 44.23 3.66
3569 3674 1.136891 GAAAAGTGGGTGCATATGCCC 59.863 52.381 24.54 22.41 45.04 5.36
3570 3675 1.824230 TGAAAAGTGGGTGCATATGCC 59.176 47.619 24.54 15.25 41.18 4.40
3571 3676 3.806625 ATGAAAAGTGGGTGCATATGC 57.193 42.857 21.09 21.09 42.50 3.14
3572 3677 7.254522 GCATTTTATGAAAAGTGGGTGCATATG 60.255 37.037 0.00 0.00 34.00 1.78
3573 3678 6.762661 GCATTTTATGAAAAGTGGGTGCATAT 59.237 34.615 0.00 0.00 34.00 1.78
3574 3679 6.105333 GCATTTTATGAAAAGTGGGTGCATA 58.895 36.000 0.00 0.00 34.00 3.14
3575 3680 4.937015 GCATTTTATGAAAAGTGGGTGCAT 59.063 37.500 0.00 0.00 34.00 3.96
3576 3681 4.202295 TGCATTTTATGAAAAGTGGGTGCA 60.202 37.500 3.38 3.38 34.00 4.57
3577 3682 4.314121 TGCATTTTATGAAAAGTGGGTGC 58.686 39.130 0.00 0.00 34.00 5.01
3578 3683 7.437793 AAATGCATTTTATGAAAAGTGGGTG 57.562 32.000 18.99 0.00 34.00 4.61
3579 3684 9.566432 TTAAAATGCATTTTATGAAAAGTGGGT 57.434 25.926 33.89 14.58 40.65 4.51
3581 3686 9.545611 GCTTAAAATGCATTTTATGAAAAGTGG 57.454 29.630 37.21 22.71 40.65 4.00
3584 3689 9.253275 CGTGCTTAAAATGCATTTTATGAAAAG 57.747 29.630 37.21 31.79 40.65 2.27
3585 3690 8.768955 ACGTGCTTAAAATGCATTTTATGAAAA 58.231 25.926 37.21 26.65 40.65 2.29
3586 3691 8.304202 ACGTGCTTAAAATGCATTTTATGAAA 57.696 26.923 37.21 28.04 40.65 2.69
3587 3692 7.881643 ACGTGCTTAAAATGCATTTTATGAA 57.118 28.000 37.21 31.35 40.65 2.57
3588 3693 7.383572 ACAACGTGCTTAAAATGCATTTTATGA 59.616 29.630 37.21 26.54 40.65 2.15
3589 3694 7.508965 ACAACGTGCTTAAAATGCATTTTATG 58.491 30.769 33.89 33.38 40.65 1.90
3590 3695 7.650834 ACAACGTGCTTAAAATGCATTTTAT 57.349 28.000 33.89 20.97 40.65 1.40
3591 3696 8.575565 TTACAACGTGCTTAAAATGCATTTTA 57.424 26.923 31.38 31.38 42.69 1.52
3592 3697 5.982465 ACAACGTGCTTAAAATGCATTTT 57.018 30.435 33.26 33.26 42.69 1.82
3593 3698 7.470289 TTTACAACGTGCTTAAAATGCATTT 57.530 28.000 18.99 18.99 42.69 2.32
3594 3699 7.470289 TTTTACAACGTGCTTAAAATGCATT 57.530 28.000 5.99 5.99 42.69 3.56
3595 3700 7.650834 ATTTTACAACGTGCTTAAAATGCAT 57.349 28.000 15.78 0.00 42.69 3.96
3596 3701 8.749841 ATATTTTACAACGTGCTTAAAATGCA 57.250 26.923 21.16 0.00 36.52 3.96
3597 3702 8.855279 TGATATTTTACAACGTGCTTAAAATGC 58.145 29.630 21.16 16.20 36.52 3.56
3627 3732 9.853555 TGTATGCGTGATATTTTCTTTTGATTT 57.146 25.926 0.00 0.00 0.00 2.17
3629 3734 9.454585 CATGTATGCGTGATATTTTCTTTTGAT 57.545 29.630 0.00 0.00 33.58 2.57
3630 3735 8.458052 ACATGTATGCGTGATATTTTCTTTTGA 58.542 29.630 10.22 0.00 35.65 2.69
3631 3736 8.619146 ACATGTATGCGTGATATTTTCTTTTG 57.381 30.769 10.22 0.00 35.65 2.44
3632 3737 9.638239 AAACATGTATGCGTGATATTTTCTTTT 57.362 25.926 10.22 0.00 35.65 2.27
3633 3738 9.075519 CAAACATGTATGCGTGATATTTTCTTT 57.924 29.630 10.22 0.00 35.65 2.52
3634 3739 7.220683 GCAAACATGTATGCGTGATATTTTCTT 59.779 33.333 10.22 0.00 35.65 2.52
3635 3740 6.692681 GCAAACATGTATGCGTGATATTTTCT 59.307 34.615 10.22 0.00 35.65 2.52
3636 3741 6.471841 TGCAAACATGTATGCGTGATATTTTC 59.528 34.615 10.22 0.00 45.47 2.29
3637 3742 6.328714 TGCAAACATGTATGCGTGATATTTT 58.671 32.000 10.22 0.00 45.47 1.82
3638 3743 5.889219 TGCAAACATGTATGCGTGATATTT 58.111 33.333 10.22 0.00 45.47 1.40
3639 3744 5.497635 TGCAAACATGTATGCGTGATATT 57.502 34.783 10.22 0.00 45.47 1.28
3640 3745 5.497635 TTGCAAACATGTATGCGTGATAT 57.502 34.783 10.22 0.00 45.47 1.63
3641 3746 4.954092 TTGCAAACATGTATGCGTGATA 57.046 36.364 10.22 0.00 45.47 2.15
3642 3747 3.846423 TTGCAAACATGTATGCGTGAT 57.154 38.095 10.22 0.00 45.47 3.06
3643 3748 3.632855 TTTGCAAACATGTATGCGTGA 57.367 38.095 8.05 0.00 45.47 4.35
3644 3749 3.674281 ACATTTGCAAACATGTATGCGTG 59.326 39.130 15.41 7.26 45.47 5.34
3645 3750 3.674281 CACATTTGCAAACATGTATGCGT 59.326 39.130 15.41 0.00 45.47 5.24
3646 3751 3.674281 ACACATTTGCAAACATGTATGCG 59.326 39.130 22.38 11.83 45.47 4.73
3647 3752 4.448395 ACACACATTTGCAAACATGTATGC 59.552 37.500 22.93 0.00 42.86 3.14
3648 3753 6.183359 CGTACACACATTTGCAAACATGTATG 60.183 38.462 22.93 20.58 34.55 2.39
3649 3754 5.855925 CGTACACACATTTGCAAACATGTAT 59.144 36.000 22.93 17.50 32.16 2.29
3650 3755 5.208503 CGTACACACATTTGCAAACATGTA 58.791 37.500 22.93 19.58 32.16 2.29
3651 3756 4.041049 CGTACACACATTTGCAAACATGT 58.959 39.130 15.41 17.95 33.72 3.21
3652 3757 3.121396 GCGTACACACATTTGCAAACATG 60.121 43.478 15.41 17.30 0.00 3.21
3653 3758 3.049206 GCGTACACACATTTGCAAACAT 58.951 40.909 15.41 2.21 0.00 2.71
3654 3759 2.455032 GCGTACACACATTTGCAAACA 58.545 42.857 15.41 0.00 0.00 2.83
3655 3760 1.446465 CGCGTACACACATTTGCAAAC 59.554 47.619 15.41 0.00 0.00 2.93
3656 3761 1.598183 CCGCGTACACACATTTGCAAA 60.598 47.619 15.44 15.44 0.00 3.68
3657 3762 0.040870 CCGCGTACACACATTTGCAA 60.041 50.000 4.92 0.00 0.00 4.08
3658 3763 1.571953 CCGCGTACACACATTTGCA 59.428 52.632 4.92 0.00 0.00 4.08
3659 3764 1.795962 GCCGCGTACACACATTTGC 60.796 57.895 4.92 0.00 0.00 3.68
3660 3765 0.724453 GTGCCGCGTACACACATTTG 60.724 55.000 20.69 0.00 37.96 2.32
3661 3766 1.160946 TGTGCCGCGTACACACATTT 61.161 50.000 23.40 0.00 42.88 2.32
3662 3767 1.595655 TGTGCCGCGTACACACATT 60.596 52.632 23.40 0.00 42.88 2.71
3663 3768 2.029815 TGTGCCGCGTACACACAT 59.970 55.556 23.40 0.00 42.88 3.21
3666 3771 1.090625 AACTTTGTGCCGCGTACACA 61.091 50.000 23.40 23.40 45.90 3.72
3667 3772 0.028374 AAACTTTGTGCCGCGTACAC 59.972 50.000 19.30 19.30 38.55 2.90
3668 3773 0.733729 AAAACTTTGTGCCGCGTACA 59.266 45.000 4.92 7.41 0.00 2.90
3669 3774 2.666836 TAAAACTTTGTGCCGCGTAC 57.333 45.000 4.92 4.39 0.00 3.67
3670 3775 2.806818 TCATAAAACTTTGTGCCGCGTA 59.193 40.909 4.92 0.00 30.49 4.42
3671 3776 1.604755 TCATAAAACTTTGTGCCGCGT 59.395 42.857 4.92 0.00 30.49 6.01
3672 3777 2.323939 TCATAAAACTTTGTGCCGCG 57.676 45.000 0.00 0.00 30.49 6.46
3673 3778 4.742659 TCTTTTCATAAAACTTTGTGCCGC 59.257 37.500 0.00 0.00 30.49 6.53
3674 3779 6.420604 ACATCTTTTCATAAAACTTTGTGCCG 59.579 34.615 0.00 0.00 30.49 5.69
3675 3780 7.653311 AGACATCTTTTCATAAAACTTTGTGCC 59.347 33.333 0.00 0.00 30.49 5.01
3676 3781 8.579682 AGACATCTTTTCATAAAACTTTGTGC 57.420 30.769 0.00 0.00 30.49 4.57
3693 3798 5.359756 GGAGGCAAAACAAAAAGACATCTT 58.640 37.500 0.00 0.00 37.91 2.40
3694 3799 4.499696 CGGAGGCAAAACAAAAAGACATCT 60.500 41.667 0.00 0.00 0.00 2.90
3695 3800 3.735746 CGGAGGCAAAACAAAAAGACATC 59.264 43.478 0.00 0.00 0.00 3.06
3696 3801 3.132111 ACGGAGGCAAAACAAAAAGACAT 59.868 39.130 0.00 0.00 0.00 3.06
3697 3802 2.494073 ACGGAGGCAAAACAAAAAGACA 59.506 40.909 0.00 0.00 0.00 3.41
3698 3803 3.159353 ACGGAGGCAAAACAAAAAGAC 57.841 42.857 0.00 0.00 0.00 3.01
3699 3804 4.985538 TTACGGAGGCAAAACAAAAAGA 57.014 36.364 0.00 0.00 0.00 2.52
3700 3805 6.410243 TTTTTACGGAGGCAAAACAAAAAG 57.590 33.333 0.00 0.00 0.00 2.27
3720 3825 9.651913 TTTAGAAGCACTGAAATTTGTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
3721 3826 9.822185 ATTTAGAAGCACTGAAATTTGTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
3724 3829 9.289782 ACTATTTAGAAGCACTGAAATTTGTCT 57.710 29.630 0.00 0.00 0.00 3.41
3725 3830 9.334693 CACTATTTAGAAGCACTGAAATTTGTC 57.665 33.333 0.00 0.00 0.00 3.18
3726 3831 8.850156 ACACTATTTAGAAGCACTGAAATTTGT 58.150 29.630 0.00 0.00 0.00 2.83
3727 3832 9.683069 AACACTATTTAGAAGCACTGAAATTTG 57.317 29.630 0.00 0.00 0.00 2.32
3729 3834 9.899226 GAAACACTATTTAGAAGCACTGAAATT 57.101 29.630 0.00 0.00 0.00 1.82
3730 3835 9.066892 TGAAACACTATTTAGAAGCACTGAAAT 57.933 29.630 0.00 0.00 0.00 2.17
3731 3836 8.342634 GTGAAACACTATTTAGAAGCACTGAAA 58.657 33.333 0.00 0.00 36.32 2.69
3732 3837 7.307160 CGTGAAACACTATTTAGAAGCACTGAA 60.307 37.037 0.00 0.00 35.74 3.02
3733 3838 6.145534 CGTGAAACACTATTTAGAAGCACTGA 59.854 38.462 0.00 0.00 35.74 3.41
3734 3839 6.145534 TCGTGAAACACTATTTAGAAGCACTG 59.854 38.462 0.00 0.00 35.74 3.66
3735 3840 6.145696 GTCGTGAAACACTATTTAGAAGCACT 59.854 38.462 0.00 0.00 35.74 4.40
3736 3841 6.073980 TGTCGTGAAACACTATTTAGAAGCAC 60.074 38.462 0.00 0.00 35.74 4.40
3737 3842 5.986741 TGTCGTGAAACACTATTTAGAAGCA 59.013 36.000 0.00 0.00 35.74 3.91
3738 3843 6.462073 TGTCGTGAAACACTATTTAGAAGC 57.538 37.500 0.00 0.00 35.74 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.