Multiple sequence alignment - TraesCS1A01G426700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G426700 chr1A 100.000 3910 0 0 1 3910 581441087 581437178 0.000000e+00 7221.0
1 TraesCS1A01G426700 chr1A 96.916 227 5 1 1 225 551180175 551179949 2.850000e-101 379.0
2 TraesCS1A01G426700 chr1B 91.113 2858 169 37 456 3260 674501076 674498251 0.000000e+00 3792.0
3 TraesCS1A01G426700 chr1B 88.559 472 24 10 3319 3762 674498249 674497780 2.660000e-151 545.0
4 TraesCS1A01G426700 chr1B 89.447 398 26 3 460 841 674505100 674504703 4.540000e-134 488.0
5 TraesCS1A01G426700 chr1B 90.909 44 1 3 3030 3070 673957534 673957491 5.460000e-04 56.5
6 TraesCS1A01G426700 chr1D 93.096 1796 84 16 496 2263 484267806 484266023 0.000000e+00 2593.0
7 TraesCS1A01G426700 chr1D 89.536 1099 72 18 2693 3762 484248177 484247093 0.000000e+00 1352.0
8 TraesCS1A01G426700 chr1D 89.927 963 65 18 2291 3250 484266026 484265093 0.000000e+00 1212.0
9 TraesCS1A01G426700 chr1D 90.253 513 37 6 2167 2679 484248771 484248272 0.000000e+00 658.0
10 TraesCS1A01G426700 chr1D 89.640 222 18 4 3235 3454 484265077 484264859 1.070000e-70 278.0
11 TraesCS1A01G426700 chr6A 96.957 230 7 0 1 230 533097435 533097206 1.700000e-103 387.0
12 TraesCS1A01G426700 chr5D 98.624 218 3 0 1 218 148731981 148731764 1.700000e-103 387.0
13 TraesCS1A01G426700 chr5D 96.916 227 6 1 1 226 328401380 328401606 2.850000e-101 379.0
14 TraesCS1A01G426700 chr5D 93.548 155 7 3 3758 3910 440780831 440780678 1.090000e-55 228.0
15 TraesCS1A01G426700 chr5D 100.000 28 0 0 909 936 562831866 562831839 7.000000e-03 52.8
16 TraesCS1A01G426700 chr4D 96.507 229 7 1 1 228 375018264 375018036 1.030000e-100 377.0
17 TraesCS1A01G426700 chr4D 94.958 238 8 4 1 235 452298537 452298301 1.720000e-98 370.0
18 TraesCS1A01G426700 chr4D 91.558 154 10 2 3759 3910 22018347 22018499 3.960000e-50 209.0
19 TraesCS1A01G426700 chr4D 91.558 154 7 6 3759 3910 428936420 428936271 1.420000e-49 207.0
20 TraesCS1A01G426700 chr5A 96.507 229 5 2 1 226 6917327 6917555 3.690000e-100 375.0
21 TraesCS1A01G426700 chr5A 92.771 249 17 1 212 460 69981681 69981434 3.710000e-95 359.0
22 TraesCS1A01G426700 chr5A 92.903 155 8 3 3758 3910 556778814 556778661 5.080000e-54 222.0
23 TraesCS1A01G426700 chr3D 93.651 252 15 1 212 462 170561254 170561505 3.690000e-100 375.0
24 TraesCS1A01G426700 chr3D 95.359 237 8 3 1 234 477210953 477210717 1.330000e-99 374.0
25 TraesCS1A01G426700 chr3D 85.143 175 22 4 3737 3910 101428493 101428664 4.020000e-40 176.0
26 TraesCS1A01G426700 chr2A 95.708 233 6 3 1 233 542769456 542769228 4.770000e-99 372.0
27 TraesCS1A01G426700 chr2A 92.218 257 12 3 212 460 712541746 712542002 1.340000e-94 357.0
28 TraesCS1A01G426700 chr2A 90.789 152 14 0 3759 3910 19379220 19379371 1.840000e-48 204.0
29 TraesCS1A01G426700 chr3A 93.281 253 11 3 212 460 574854918 574855168 6.170000e-98 368.0
30 TraesCS1A01G426700 chr2D 92.885 253 16 2 212 462 174333798 174334050 2.220000e-97 366.0
31 TraesCS1A01G426700 chr7A 92.549 255 16 3 212 465 210597547 210597295 2.870000e-96 363.0
32 TraesCS1A01G426700 chr6D 92.829 251 16 1 212 460 407822672 407822922 2.870000e-96 363.0
33 TraesCS1A01G426700 chr6B 92.771 249 18 0 212 460 22518893 22518645 1.030000e-95 361.0
34 TraesCS1A01G426700 chr3B 92.460 252 18 1 212 463 712201226 712200976 3.710000e-95 359.0
35 TraesCS1A01G426700 chr5B 93.548 155 8 2 3758 3910 536311660 536311506 3.040000e-56 230.0
36 TraesCS1A01G426700 chr4A 93.506 154 5 3 3759 3910 37347249 37347399 1.410000e-54 224.0
37 TraesCS1A01G426700 chr4A 91.558 154 9 4 3759 3910 579865448 579865297 3.960000e-50 209.0
38 TraesCS1A01G426700 chr7B 96.774 31 1 0 906 936 36560 36590 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G426700 chr1A 581437178 581441087 3909 True 7221.000000 7221 100.000000 1 3910 1 chr1A.!!$R2 3909
1 TraesCS1A01G426700 chr1B 674497780 674505100 7320 True 1608.333333 3792 89.706333 456 3762 3 chr1B.!!$R2 3306
2 TraesCS1A01G426700 chr1D 484264859 484267806 2947 True 1361.000000 2593 90.887667 496 3454 3 chr1D.!!$R2 2958
3 TraesCS1A01G426700 chr1D 484247093 484248771 1678 True 1005.000000 1352 89.894500 2167 3762 2 chr1D.!!$R1 1595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.035458 AGAAAGAGGAGTGCGGGTTG 59.965 55.0 0.00 0.00 0.00 3.77 F
273 274 0.955919 GAAAGAGGAGTGCGGGTTGG 60.956 60.0 0.00 0.00 0.00 3.77 F
1195 5246 1.095807 GGCCACCGCTAAGATCCAAC 61.096 60.0 0.00 0.00 34.44 3.77 F
1964 6022 0.605083 TCTGTACTCTGCTGCACCAG 59.395 55.0 2.36 2.36 34.12 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 5236 0.177141 CGGGCGAAGGTTGGATCTTA 59.823 55.0 0.0 0.0 0.00 2.10 R
1941 5997 0.605083 TGCAGCAGAGTACAGAGTGG 59.395 55.0 0.0 0.0 0.00 4.00 R
2274 6356 1.194781 AGACTGAACCGACTGGGCAT 61.195 55.0 0.0 0.0 40.62 4.40 R
3708 7957 0.042581 TAGGGACAGAGGGCACATGA 59.957 55.0 0.0 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
20 21 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
21 22 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
22 23 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
23 24 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
24 25 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
25 26 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
26 27 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
27 28 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
28 29 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
29 30 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
30 31 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
31 32 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
32 33 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
33 34 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
34 35 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
35 36 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
36 37 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
37 38 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
38 39 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
39 40 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
40 41 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
41 42 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
42 43 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
43 44 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
44 45 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
45 46 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
46 47 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
47 48 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
48 49 3.733337 ACCATCTATTGATCAACGAGCC 58.267 45.455 11.07 0.00 0.00 4.70
49 50 3.134623 ACCATCTATTGATCAACGAGCCA 59.865 43.478 11.07 0.00 0.00 4.75
50 51 4.129380 CCATCTATTGATCAACGAGCCAA 58.871 43.478 11.07 0.00 0.00 4.52
51 52 4.758674 CCATCTATTGATCAACGAGCCAAT 59.241 41.667 11.07 0.00 34.16 3.16
52 53 5.106791 CCATCTATTGATCAACGAGCCAATC 60.107 44.000 11.07 0.00 32.28 2.67
53 54 5.022282 TCTATTGATCAACGAGCCAATCA 57.978 39.130 11.07 0.00 32.28 2.57
54 55 5.427378 TCTATTGATCAACGAGCCAATCAA 58.573 37.500 11.07 0.00 41.06 2.57
55 56 3.829886 TTGATCAACGAGCCAATCAAC 57.170 42.857 3.38 0.00 34.20 3.18
56 57 3.057969 TGATCAACGAGCCAATCAACT 57.942 42.857 0.00 0.00 0.00 3.16
57 58 4.200838 TGATCAACGAGCCAATCAACTA 57.799 40.909 0.00 0.00 0.00 2.24
58 59 4.183865 TGATCAACGAGCCAATCAACTAG 58.816 43.478 0.00 0.00 0.00 2.57
59 60 3.953712 TCAACGAGCCAATCAACTAGA 57.046 42.857 0.00 0.00 0.00 2.43
60 61 3.849911 TCAACGAGCCAATCAACTAGAG 58.150 45.455 0.00 0.00 0.00 2.43
61 62 2.932614 CAACGAGCCAATCAACTAGAGG 59.067 50.000 0.00 0.00 0.00 3.69
62 63 1.134670 ACGAGCCAATCAACTAGAGGC 60.135 52.381 0.00 0.00 45.54 4.70
67 68 4.143986 GCCAATCAACTAGAGGCTTACT 57.856 45.455 0.00 0.00 42.01 2.24
68 69 5.277857 GCCAATCAACTAGAGGCTTACTA 57.722 43.478 0.00 0.00 42.01 1.82
69 70 5.293560 GCCAATCAACTAGAGGCTTACTAG 58.706 45.833 8.32 8.32 42.01 2.57
70 71 5.740513 GCCAATCAACTAGAGGCTTACTAGG 60.741 48.000 13.13 0.00 42.01 3.02
71 72 5.221541 CCAATCAACTAGAGGCTTACTAGGG 60.222 48.000 13.13 6.54 40.86 3.53
72 73 4.875578 TCAACTAGAGGCTTACTAGGGA 57.124 45.455 13.13 8.30 40.86 4.20
73 74 4.534797 TCAACTAGAGGCTTACTAGGGAC 58.465 47.826 13.13 0.00 40.86 4.46
74 75 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
75 76 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
76 77 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
77 78 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
78 79 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
79 80 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
80 81 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
81 82 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
82 83 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
83 84 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
84 85 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
85 86 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
86 87 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
87 88 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
88 89 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
89 90 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
90 91 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
91 92 4.721776 AGGGACATGGTGTTGTCTATGTAT 59.278 41.667 0.00 0.00 44.39 2.29
92 93 5.057149 GGGACATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 44.39 2.24
93 94 5.057149 GGACATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 44.39 2.59
94 95 5.396324 GGACATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 44.39 3.41
95 96 5.428253 ACATGGTGTTGTCTATGTATCCAC 58.572 41.667 0.00 0.00 32.41 4.02
96 97 5.045942 ACATGGTGTTGTCTATGTATCCACA 60.046 40.000 0.00 0.00 39.52 4.17
97 98 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
98 99 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
99 100 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
100 101 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
101 102 5.874810 GTGTTGTCTATGTATCCACACATGT 59.125 40.000 0.00 0.00 39.46 3.21
102 103 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
103 104 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
104 105 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
105 106 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
106 107 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
107 108 7.505585 TGTCTATGTATCCACACATGTATCTGA 59.494 37.037 0.00 0.00 39.46 3.27
108 109 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
109 110 6.737720 ATGTATCCACACATGTATCTGAGT 57.262 37.500 0.00 0.00 37.74 3.41
110 111 6.544928 TGTATCCACACATGTATCTGAGTT 57.455 37.500 0.00 0.00 0.00 3.01
111 112 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
112 113 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
113 114 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
114 115 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
115 116 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
116 117 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
117 118 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
118 119 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
119 120 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
120 121 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
121 122 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
122 123 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
123 124 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
131 132 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
132 133 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
135 136 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
136 137 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41
137 138 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
146 147 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
147 148 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
198 199 7.839680 AACCAATTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
211 212 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
212 213 4.392940 CCTCTAGGGCATATTTCCAACAG 58.607 47.826 0.00 0.00 0.00 3.16
213 214 4.392940 CTCTAGGGCATATTTCCAACAGG 58.607 47.826 0.00 0.00 0.00 4.00
214 215 4.044308 TCTAGGGCATATTTCCAACAGGA 58.956 43.478 0.00 0.00 0.00 3.86
215 216 3.303351 AGGGCATATTTCCAACAGGAG 57.697 47.619 0.00 0.00 31.86 3.69
216 217 1.683385 GGGCATATTTCCAACAGGAGC 59.317 52.381 0.00 0.00 31.86 4.70
217 218 1.683385 GGCATATTTCCAACAGGAGCC 59.317 52.381 0.00 0.00 32.65 4.70
218 219 1.334869 GCATATTTCCAACAGGAGCCG 59.665 52.381 0.00 0.00 31.86 5.52
219 220 1.949525 CATATTTCCAACAGGAGCCGG 59.050 52.381 0.00 0.00 31.86 6.13
220 221 0.254747 TATTTCCAACAGGAGCCGGG 59.745 55.000 2.18 0.00 31.86 5.73
221 222 2.499303 ATTTCCAACAGGAGCCGGGG 62.499 60.000 2.18 0.00 31.86 5.73
222 223 4.649705 TCCAACAGGAGCCGGGGA 62.650 66.667 2.18 0.00 0.00 4.81
223 224 4.101448 CCAACAGGAGCCGGGGAG 62.101 72.222 2.18 0.00 0.00 4.30
224 225 4.101448 CAACAGGAGCCGGGGAGG 62.101 72.222 2.18 0.00 44.97 4.30
233 234 3.089874 CCGGGGAGGCAGGATGAA 61.090 66.667 0.00 0.00 39.69 2.57
234 235 2.679342 CCGGGGAGGCAGGATGAAA 61.679 63.158 0.00 0.00 39.69 2.69
235 236 1.452108 CGGGGAGGCAGGATGAAAC 60.452 63.158 0.00 0.00 39.69 2.78
236 237 1.915078 CGGGGAGGCAGGATGAAACT 61.915 60.000 0.00 0.00 39.69 2.66
237 238 0.332972 GGGGAGGCAGGATGAAACTT 59.667 55.000 0.00 0.00 39.69 2.66
238 239 1.683319 GGGGAGGCAGGATGAAACTTC 60.683 57.143 0.00 0.00 39.69 3.01
239 240 1.683319 GGGAGGCAGGATGAAACTTCC 60.683 57.143 0.00 0.00 39.69 3.46
240 241 1.683319 GGAGGCAGGATGAAACTTCCC 60.683 57.143 0.00 0.00 39.69 3.97
241 242 1.283321 GAGGCAGGATGAAACTTCCCT 59.717 52.381 0.00 0.00 39.69 4.20
242 243 1.283321 AGGCAGGATGAAACTTCCCTC 59.717 52.381 0.00 0.00 39.69 4.30
243 244 1.683319 GGCAGGATGAAACTTCCCTCC 60.683 57.143 0.00 1.66 39.69 4.30
244 245 1.683319 GCAGGATGAAACTTCCCTCCC 60.683 57.143 0.00 0.00 39.69 4.30
245 246 0.912486 AGGATGAAACTTCCCTCCCG 59.088 55.000 0.00 0.00 33.45 5.14
246 247 0.748367 GGATGAAACTTCCCTCCCGC 60.748 60.000 0.00 0.00 0.00 6.13
247 248 1.078426 ATGAAACTTCCCTCCCGCG 60.078 57.895 0.00 0.00 0.00 6.46
248 249 3.125573 GAAACTTCCCTCCCGCGC 61.126 66.667 0.00 0.00 0.00 6.86
252 253 4.752879 CTTCCCTCCCGCGCGAAA 62.753 66.667 34.63 17.87 0.00 3.46
253 254 4.317444 TTCCCTCCCGCGCGAAAA 62.317 61.111 34.63 15.06 0.00 2.29
254 255 4.752879 TCCCTCCCGCGCGAAAAG 62.753 66.667 34.63 23.40 0.00 2.27
255 256 4.752879 CCCTCCCGCGCGAAAAGA 62.753 66.667 34.63 20.27 0.00 2.52
256 257 2.740826 CCTCCCGCGCGAAAAGAA 60.741 61.111 34.63 8.45 0.00 2.52
257 258 2.322081 CCTCCCGCGCGAAAAGAAA 61.322 57.895 34.63 6.94 0.00 2.52
258 259 1.132640 CTCCCGCGCGAAAAGAAAG 59.867 57.895 34.63 11.81 0.00 2.62
259 260 1.289109 CTCCCGCGCGAAAAGAAAGA 61.289 55.000 34.63 12.75 0.00 2.52
260 261 1.132640 CCCGCGCGAAAAGAAAGAG 59.867 57.895 34.63 10.13 0.00 2.85
261 262 1.132640 CCGCGCGAAAAGAAAGAGG 59.867 57.895 34.63 5.49 0.00 3.69
262 263 1.289109 CCGCGCGAAAAGAAAGAGGA 61.289 55.000 34.63 0.00 0.00 3.71
263 264 0.093705 CGCGCGAAAAGAAAGAGGAG 59.906 55.000 28.94 0.00 0.00 3.69
264 265 1.149148 GCGCGAAAAGAAAGAGGAGT 58.851 50.000 12.10 0.00 0.00 3.85
265 266 1.136224 GCGCGAAAAGAAAGAGGAGTG 60.136 52.381 12.10 0.00 0.00 3.51
266 267 1.136224 CGCGAAAAGAAAGAGGAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
267 268 1.136224 GCGAAAAGAAAGAGGAGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
268 269 1.461127 CGAAAAGAAAGAGGAGTGCGG 59.539 52.381 0.00 0.00 0.00 5.69
269 270 1.807142 GAAAAGAAAGAGGAGTGCGGG 59.193 52.381 0.00 0.00 0.00 6.13
270 271 0.765510 AAAGAAAGAGGAGTGCGGGT 59.234 50.000 0.00 0.00 0.00 5.28
271 272 0.765510 AAGAAAGAGGAGTGCGGGTT 59.234 50.000 0.00 0.00 0.00 4.11
272 273 0.035458 AGAAAGAGGAGTGCGGGTTG 59.965 55.000 0.00 0.00 0.00 3.77
273 274 0.955919 GAAAGAGGAGTGCGGGTTGG 60.956 60.000 0.00 0.00 0.00 3.77
274 275 2.411765 AAAGAGGAGTGCGGGTTGGG 62.412 60.000 0.00 0.00 0.00 4.12
275 276 4.410400 GAGGAGTGCGGGTTGGGG 62.410 72.222 0.00 0.00 0.00 4.96
292 293 2.971901 GGGGGAGTTTTTCCTCTCAA 57.028 50.000 0.00 0.00 46.65 3.02
293 294 2.515854 GGGGGAGTTTTTCCTCTCAAC 58.484 52.381 0.00 0.00 46.65 3.18
294 295 2.515854 GGGGAGTTTTTCCTCTCAACC 58.484 52.381 0.00 0.00 43.80 3.77
295 296 2.515854 GGGAGTTTTTCCTCTCAACCC 58.484 52.381 0.00 0.00 45.98 4.11
296 297 2.108425 GGGAGTTTTTCCTCTCAACCCT 59.892 50.000 0.00 0.00 45.98 4.34
297 298 3.413327 GGAGTTTTTCCTCTCAACCCTC 58.587 50.000 0.00 0.00 43.16 4.30
298 299 3.181443 GGAGTTTTTCCTCTCAACCCTCA 60.181 47.826 0.00 0.00 43.16 3.86
299 300 3.815962 GAGTTTTTCCTCTCAACCCTCAC 59.184 47.826 0.00 0.00 0.00 3.51
300 301 3.459969 AGTTTTTCCTCTCAACCCTCACT 59.540 43.478 0.00 0.00 0.00 3.41
301 302 4.079730 AGTTTTTCCTCTCAACCCTCACTT 60.080 41.667 0.00 0.00 0.00 3.16
302 303 3.771577 TTTCCTCTCAACCCTCACTTC 57.228 47.619 0.00 0.00 0.00 3.01
303 304 2.704190 TCCTCTCAACCCTCACTTCT 57.296 50.000 0.00 0.00 0.00 2.85
304 305 3.827817 TCCTCTCAACCCTCACTTCTA 57.172 47.619 0.00 0.00 0.00 2.10
305 306 3.432378 TCCTCTCAACCCTCACTTCTAC 58.568 50.000 0.00 0.00 0.00 2.59
306 307 3.165875 CCTCTCAACCCTCACTTCTACA 58.834 50.000 0.00 0.00 0.00 2.74
307 308 3.194542 CCTCTCAACCCTCACTTCTACAG 59.805 52.174 0.00 0.00 0.00 2.74
308 309 3.165875 TCTCAACCCTCACTTCTACAGG 58.834 50.000 0.00 0.00 0.00 4.00
309 310 2.900546 CTCAACCCTCACTTCTACAGGT 59.099 50.000 0.00 0.00 0.00 4.00
310 311 3.314693 TCAACCCTCACTTCTACAGGTT 58.685 45.455 0.00 0.00 38.10 3.50
311 312 3.403038 CAACCCTCACTTCTACAGGTTG 58.597 50.000 5.42 5.42 45.76 3.77
312 313 1.978580 ACCCTCACTTCTACAGGTTGG 59.021 52.381 0.00 0.00 0.00 3.77
313 314 1.279271 CCCTCACTTCTACAGGTTGGG 59.721 57.143 0.00 0.00 0.00 4.12
314 315 2.257207 CCTCACTTCTACAGGTTGGGA 58.743 52.381 0.00 0.00 0.00 4.37
315 316 2.637872 CCTCACTTCTACAGGTTGGGAA 59.362 50.000 0.00 0.00 0.00 3.97
316 317 3.072476 CCTCACTTCTACAGGTTGGGAAA 59.928 47.826 0.00 0.00 0.00 3.13
317 318 4.065789 CTCACTTCTACAGGTTGGGAAAC 58.934 47.826 0.00 0.00 0.00 2.78
318 319 3.456644 TCACTTCTACAGGTTGGGAAACA 59.543 43.478 0.00 0.00 0.00 2.83
319 320 4.080243 TCACTTCTACAGGTTGGGAAACAA 60.080 41.667 0.00 0.00 36.54 2.83
320 321 4.827284 CACTTCTACAGGTTGGGAAACAAT 59.173 41.667 0.00 0.00 41.95 2.71
321 322 5.301805 CACTTCTACAGGTTGGGAAACAATT 59.698 40.000 0.00 0.00 41.95 2.32
322 323 5.897250 ACTTCTACAGGTTGGGAAACAATTT 59.103 36.000 0.00 0.00 41.95 1.82
323 324 5.782893 TCTACAGGTTGGGAAACAATTTG 57.217 39.130 0.00 0.00 41.95 2.32
324 325 5.450453 TCTACAGGTTGGGAAACAATTTGA 58.550 37.500 2.79 0.00 41.95 2.69
325 326 4.670896 ACAGGTTGGGAAACAATTTGAG 57.329 40.909 2.79 0.00 41.95 3.02
326 327 3.387699 ACAGGTTGGGAAACAATTTGAGG 59.612 43.478 2.79 0.00 41.95 3.86
327 328 2.972021 AGGTTGGGAAACAATTTGAGGG 59.028 45.455 2.79 0.00 41.95 4.30
328 329 2.703536 GGTTGGGAAACAATTTGAGGGT 59.296 45.455 2.79 0.00 41.95 4.34
329 330 3.135712 GGTTGGGAAACAATTTGAGGGTT 59.864 43.478 2.79 0.00 41.95 4.11
330 331 4.126437 GTTGGGAAACAATTTGAGGGTTG 58.874 43.478 2.79 0.00 41.95 3.77
331 332 2.703007 TGGGAAACAATTTGAGGGTTGG 59.297 45.455 2.79 0.00 0.00 3.77
332 333 2.969262 GGGAAACAATTTGAGGGTTGGA 59.031 45.455 2.79 0.00 0.00 3.53
333 334 3.244078 GGGAAACAATTTGAGGGTTGGAC 60.244 47.826 2.79 0.00 0.00 4.02
334 335 3.244078 GGAAACAATTTGAGGGTTGGACC 60.244 47.826 2.79 0.00 37.60 4.46
335 336 3.328535 AACAATTTGAGGGTTGGACCT 57.671 42.857 2.79 0.00 45.57 3.85
345 346 4.741928 AGGGTTGGACCTCTAAATTGTT 57.258 40.909 0.00 0.00 38.64 2.83
346 347 5.074746 AGGGTTGGACCTCTAAATTGTTT 57.925 39.130 0.00 0.00 38.64 2.83
347 348 5.464069 AGGGTTGGACCTCTAAATTGTTTT 58.536 37.500 0.00 0.00 38.64 2.43
348 349 6.616577 AGGGTTGGACCTCTAAATTGTTTTA 58.383 36.000 0.00 0.00 38.64 1.52
349 350 6.492429 AGGGTTGGACCTCTAAATTGTTTTAC 59.508 38.462 0.00 0.00 38.64 2.01
350 351 6.376177 GGTTGGACCTCTAAATTGTTTTACG 58.624 40.000 0.00 0.00 34.73 3.18
351 352 6.376177 GTTGGACCTCTAAATTGTTTTACGG 58.624 40.000 0.00 0.00 0.00 4.02
352 353 5.005094 TGGACCTCTAAATTGTTTTACGGG 58.995 41.667 0.00 0.00 0.00 5.28
353 354 5.005740 GGACCTCTAAATTGTTTTACGGGT 58.994 41.667 0.00 0.00 33.43 5.28
354 355 5.474532 GGACCTCTAAATTGTTTTACGGGTT 59.525 40.000 0.00 0.00 32.12 4.11
355 356 6.016024 GGACCTCTAAATTGTTTTACGGGTTT 60.016 38.462 0.00 0.00 32.12 3.27
356 357 6.741109 ACCTCTAAATTGTTTTACGGGTTTG 58.259 36.000 0.00 0.00 29.77 2.93
357 358 6.546772 ACCTCTAAATTGTTTTACGGGTTTGA 59.453 34.615 0.00 0.00 29.77 2.69
358 359 7.081976 CCTCTAAATTGTTTTACGGGTTTGAG 58.918 38.462 0.00 0.00 0.00 3.02
359 360 6.972722 TCTAAATTGTTTTACGGGTTTGAGG 58.027 36.000 0.00 0.00 0.00 3.86
360 361 4.594123 AATTGTTTTACGGGTTTGAGGG 57.406 40.909 0.00 0.00 0.00 4.30
361 362 2.732844 TGTTTTACGGGTTTGAGGGT 57.267 45.000 0.00 0.00 0.00 4.34
362 363 3.015675 TGTTTTACGGGTTTGAGGGTT 57.984 42.857 0.00 0.00 0.00 4.11
363 364 3.363627 TGTTTTACGGGTTTGAGGGTTT 58.636 40.909 0.00 0.00 0.00 3.27
364 365 4.530875 TGTTTTACGGGTTTGAGGGTTTA 58.469 39.130 0.00 0.00 0.00 2.01
365 366 4.579753 TGTTTTACGGGTTTGAGGGTTTAG 59.420 41.667 0.00 0.00 0.00 1.85
366 367 4.703379 TTTACGGGTTTGAGGGTTTAGA 57.297 40.909 0.00 0.00 0.00 2.10
367 368 2.853235 ACGGGTTTGAGGGTTTAGAG 57.147 50.000 0.00 0.00 0.00 2.43
368 369 1.350019 ACGGGTTTGAGGGTTTAGAGG 59.650 52.381 0.00 0.00 0.00 3.69
369 370 1.350019 CGGGTTTGAGGGTTTAGAGGT 59.650 52.381 0.00 0.00 0.00 3.85
370 371 2.224695 CGGGTTTGAGGGTTTAGAGGTT 60.225 50.000 0.00 0.00 0.00 3.50
371 372 3.749632 CGGGTTTGAGGGTTTAGAGGTTT 60.750 47.826 0.00 0.00 0.00 3.27
372 373 4.220724 GGGTTTGAGGGTTTAGAGGTTTT 58.779 43.478 0.00 0.00 0.00 2.43
373 374 5.387788 GGGTTTGAGGGTTTAGAGGTTTTA 58.612 41.667 0.00 0.00 0.00 1.52
374 375 5.475909 GGGTTTGAGGGTTTAGAGGTTTTAG 59.524 44.000 0.00 0.00 0.00 1.85
375 376 6.066690 GGTTTGAGGGTTTAGAGGTTTTAGT 58.933 40.000 0.00 0.00 0.00 2.24
376 377 6.206243 GGTTTGAGGGTTTAGAGGTTTTAGTC 59.794 42.308 0.00 0.00 0.00 2.59
377 378 6.758806 TTGAGGGTTTAGAGGTTTTAGTCT 57.241 37.500 0.00 0.00 0.00 3.24
378 379 7.860649 TTGAGGGTTTAGAGGTTTTAGTCTA 57.139 36.000 0.00 0.00 0.00 2.59
379 380 8.445361 TTGAGGGTTTAGAGGTTTTAGTCTAT 57.555 34.615 0.00 0.00 0.00 1.98
380 381 7.848128 TGAGGGTTTAGAGGTTTTAGTCTATG 58.152 38.462 0.00 0.00 0.00 2.23
381 382 7.093024 TGAGGGTTTAGAGGTTTTAGTCTATGG 60.093 40.741 0.00 0.00 0.00 2.74
382 383 5.821470 GGGTTTAGAGGTTTTAGTCTATGGC 59.179 44.000 0.00 0.00 0.00 4.40
383 384 6.352823 GGGTTTAGAGGTTTTAGTCTATGGCT 60.353 42.308 0.00 0.00 0.00 4.75
384 385 7.110810 GGTTTAGAGGTTTTAGTCTATGGCTT 58.889 38.462 0.00 0.00 0.00 4.35
385 386 7.610692 GGTTTAGAGGTTTTAGTCTATGGCTTT 59.389 37.037 0.00 0.00 0.00 3.51
386 387 9.011095 GTTTAGAGGTTTTAGTCTATGGCTTTT 57.989 33.333 0.00 0.00 0.00 2.27
387 388 9.582648 TTTAGAGGTTTTAGTCTATGGCTTTTT 57.417 29.630 0.00 0.00 0.00 1.94
433 434 9.996554 AAACAGTTATTTTTAAGGATTTGAGGG 57.003 29.630 0.00 0.00 0.00 4.30
434 435 8.721133 ACAGTTATTTTTAAGGATTTGAGGGT 57.279 30.769 0.00 0.00 0.00 4.34
435 436 9.154632 ACAGTTATTTTTAAGGATTTGAGGGTT 57.845 29.630 0.00 0.00 0.00 4.11
436 437 9.996554 CAGTTATTTTTAAGGATTTGAGGGTTT 57.003 29.630 0.00 0.00 0.00 3.27
437 438 9.996554 AGTTATTTTTAAGGATTTGAGGGTTTG 57.003 29.630 0.00 0.00 0.00 2.93
438 439 9.990360 GTTATTTTTAAGGATTTGAGGGTTTGA 57.010 29.630 0.00 0.00 0.00 2.69
441 442 6.664428 TTTAAGGATTTGAGGGTTTGAAGG 57.336 37.500 0.00 0.00 0.00 3.46
442 443 2.529632 AGGATTTGAGGGTTTGAAGGC 58.470 47.619 0.00 0.00 0.00 4.35
443 444 2.110721 AGGATTTGAGGGTTTGAAGGCT 59.889 45.455 0.00 0.00 0.00 4.58
444 445 2.493675 GGATTTGAGGGTTTGAAGGCTC 59.506 50.000 0.00 0.00 0.00 4.70
445 446 3.425659 GATTTGAGGGTTTGAAGGCTCT 58.574 45.455 0.00 0.00 0.00 4.09
446 447 4.567747 GGATTTGAGGGTTTGAAGGCTCTA 60.568 45.833 0.00 0.00 0.00 2.43
447 448 3.418684 TTGAGGGTTTGAAGGCTCTAC 57.581 47.619 0.00 0.00 0.00 2.59
448 449 2.621070 TGAGGGTTTGAAGGCTCTACT 58.379 47.619 0.00 0.00 0.00 2.57
449 450 2.303022 TGAGGGTTTGAAGGCTCTACTG 59.697 50.000 0.00 0.00 0.00 2.74
450 451 1.630878 AGGGTTTGAAGGCTCTACTGG 59.369 52.381 0.00 0.00 0.00 4.00
451 452 1.628846 GGGTTTGAAGGCTCTACTGGA 59.371 52.381 0.00 0.00 0.00 3.86
452 453 2.239907 GGGTTTGAAGGCTCTACTGGAT 59.760 50.000 0.00 0.00 0.00 3.41
453 454 3.308473 GGGTTTGAAGGCTCTACTGGATT 60.308 47.826 0.00 0.00 0.00 3.01
454 455 4.336280 GGTTTGAAGGCTCTACTGGATTT 58.664 43.478 0.00 0.00 0.00 2.17
455 456 4.156739 GGTTTGAAGGCTCTACTGGATTTG 59.843 45.833 0.00 0.00 0.00 2.32
456 457 2.991250 TGAAGGCTCTACTGGATTTGC 58.009 47.619 0.00 0.00 0.00 3.68
457 458 2.573462 TGAAGGCTCTACTGGATTTGCT 59.427 45.455 0.00 0.00 0.00 3.91
458 459 2.998316 AGGCTCTACTGGATTTGCTC 57.002 50.000 0.00 0.00 0.00 4.26
459 460 2.476199 AGGCTCTACTGGATTTGCTCT 58.524 47.619 0.00 0.00 0.00 4.09
460 461 2.843113 AGGCTCTACTGGATTTGCTCTT 59.157 45.455 0.00 0.00 0.00 2.85
461 462 4.033709 AGGCTCTACTGGATTTGCTCTTA 58.966 43.478 0.00 0.00 0.00 2.10
462 463 4.657969 AGGCTCTACTGGATTTGCTCTTAT 59.342 41.667 0.00 0.00 0.00 1.73
463 464 5.841237 AGGCTCTACTGGATTTGCTCTTATA 59.159 40.000 0.00 0.00 0.00 0.98
493 494 4.385244 GTACAACACTTGGACAATCGAC 57.615 45.455 0.00 0.00 44.13 4.20
494 495 3.194005 ACAACACTTGGACAATCGACT 57.806 42.857 0.00 0.00 34.12 4.18
530 531 1.264288 CTTGGGCAAGTTGAAGTCGAC 59.736 52.381 7.70 7.70 33.87 4.20
542 543 1.532604 AAGTCGACGACCAGGATGCA 61.533 55.000 23.76 0.00 32.18 3.96
588 589 5.163992 GCACTCAGATTTCGACGTATTTTCA 60.164 40.000 0.00 0.00 0.00 2.69
679 688 3.043713 CACGTCGCACTGCCATGT 61.044 61.111 0.00 0.00 0.00 3.21
888 4939 4.783734 GACGTACGTGTCCCGCCC 62.784 72.222 28.16 4.50 41.42 6.13
930 4981 2.820479 GGCAGCAGAGCAGAGCAG 60.820 66.667 0.00 0.00 35.83 4.24
931 4982 2.265109 GCAGCAGAGCAGAGCAGA 59.735 61.111 0.00 0.00 0.00 4.26
932 4983 1.812093 GCAGCAGAGCAGAGCAGAG 60.812 63.158 0.00 0.00 0.00 3.35
933 4984 1.812093 CAGCAGAGCAGAGCAGAGC 60.812 63.158 0.00 0.00 0.00 4.09
934 4985 2.265109 GCAGAGCAGAGCAGAGCA 59.735 61.111 0.00 0.00 0.00 4.26
962 5013 1.358877 CATTGCTTCCACACGATCGA 58.641 50.000 24.34 0.00 0.00 3.59
1193 5244 2.908015 GGCCACCGCTAAGATCCA 59.092 61.111 0.00 0.00 34.44 3.41
1194 5245 1.223487 GGCCACCGCTAAGATCCAA 59.777 57.895 0.00 0.00 34.44 3.53
1195 5246 1.095807 GGCCACCGCTAAGATCCAAC 61.096 60.000 0.00 0.00 34.44 3.77
1352 5403 1.843206 GAAGAAGAGGAAGCAGGGGAT 59.157 52.381 0.00 0.00 0.00 3.85
1355 5406 1.561542 GAAGAGGAAGCAGGGGATGAA 59.438 52.381 0.00 0.00 0.00 2.57
1371 5425 2.168326 TGAAGAAATCAGCAGCGACA 57.832 45.000 0.00 0.00 33.04 4.35
1407 5461 1.674057 CAGGAGGACAGTGGTGGTC 59.326 63.158 0.00 0.00 34.52 4.02
1632 5686 2.011947 CGCCTCTTCAAGATCATGCAA 58.988 47.619 0.00 0.00 0.00 4.08
1689 5745 8.647256 AACTCTTCTTGAATCTTGATTCCATT 57.353 30.769 17.50 0.00 0.00 3.16
1922 5978 4.985538 AGGAACAAGCTCATCAAGGTAAA 58.014 39.130 0.00 0.00 33.60 2.01
1937 5993 2.425668 AGGTAAACAACAACACTGCCAC 59.574 45.455 0.00 0.00 0.00 5.01
1941 5997 1.094785 ACAACAACACTGCCACTGAC 58.905 50.000 0.00 0.00 0.00 3.51
1953 6009 1.067495 GCCACTGACCACTCTGTACTC 60.067 57.143 0.00 0.00 0.00 2.59
1954 6010 2.520069 CCACTGACCACTCTGTACTCT 58.480 52.381 0.00 0.00 0.00 3.24
1955 6011 2.230025 CCACTGACCACTCTGTACTCTG 59.770 54.545 0.00 0.00 0.00 3.35
1956 6012 1.889829 ACTGACCACTCTGTACTCTGC 59.110 52.381 0.00 0.00 0.00 4.26
1959 6017 0.605589 ACCACTCTGTACTCTGCTGC 59.394 55.000 0.00 0.00 0.00 5.25
1964 6022 0.605083 TCTGTACTCTGCTGCACCAG 59.395 55.000 2.36 2.36 34.12 4.00
1967 6025 0.671781 GTACTCTGCTGCACCAGTGG 60.672 60.000 7.91 7.91 33.43 4.00
2003 6061 4.230455 TGGAATCCAACTGAAATTTGGGT 58.770 39.130 0.00 0.00 43.38 4.51
2274 6356 2.818291 TAATGCCTGCCGAGCTTGCA 62.818 55.000 10.92 10.92 39.20 4.08
2332 6419 2.733552 CTGTCCGTGTTTGTCAGAGATG 59.266 50.000 0.00 0.00 0.00 2.90
2349 6436 6.209986 TCAGAGATGGAAATGCTGAAATGTTT 59.790 34.615 0.00 0.00 33.11 2.83
2389 6478 3.705579 CAGGAGAGACAGGAGATCAACAT 59.294 47.826 0.00 0.00 0.00 2.71
2424 6513 3.132139 CGTTCGAGCTCGGGAGGA 61.132 66.667 33.98 13.46 40.29 3.71
2606 6695 2.518349 ACCCACAAGCACAACCGG 60.518 61.111 0.00 0.00 0.00 5.28
2650 6745 6.583912 CGACCTCGTAATCATAAACAACAT 57.416 37.500 0.00 0.00 34.11 2.71
2656 6751 8.278408 CCTCGTAATCATAAACAACATCATCAG 58.722 37.037 0.00 0.00 0.00 2.90
2657 6752 8.716646 TCGTAATCATAAACAACATCATCAGT 57.283 30.769 0.00 0.00 0.00 3.41
2658 6753 9.161629 TCGTAATCATAAACAACATCATCAGTT 57.838 29.630 0.00 0.00 0.00 3.16
2673 6768 5.463286 TCATCAGTTGATTCATGTGTTTGC 58.537 37.500 0.00 0.00 31.21 3.68
2679 6774 5.981315 AGTTGATTCATGTGTTTGCTTTCTG 59.019 36.000 0.00 0.00 0.00 3.02
2680 6775 5.771153 TGATTCATGTGTTTGCTTTCTGA 57.229 34.783 0.00 0.00 0.00 3.27
2916 7092 8.638873 ACCTACGAAGATACATGTGAAATCATA 58.361 33.333 9.11 0.00 0.00 2.15
2919 7095 7.800767 ACGAAGATACATGTGAAATCATATGC 58.199 34.615 16.96 4.70 45.60 3.14
3088 7272 1.982660 TAGACCTCGGGCTGATGTAG 58.017 55.000 0.36 0.00 0.00 2.74
3089 7273 0.259065 AGACCTCGGGCTGATGTAGA 59.741 55.000 4.12 0.00 0.00 2.59
3090 7274 0.671251 GACCTCGGGCTGATGTAGAG 59.329 60.000 4.12 0.00 0.00 2.43
3091 7275 0.033011 ACCTCGGGCTGATGTAGAGT 60.033 55.000 2.11 0.00 0.00 3.24
3092 7276 1.214673 ACCTCGGGCTGATGTAGAGTA 59.785 52.381 2.11 0.00 0.00 2.59
3103 7287 7.102346 GGCTGATGTAGAGTAATTCATAGCAT 58.898 38.462 0.00 0.00 0.00 3.79
3104 7288 8.253810 GGCTGATGTAGAGTAATTCATAGCATA 58.746 37.037 0.00 0.00 0.00 3.14
3134 7318 9.729281 AAAAGAAAACGGTCTCTGGTATTATTA 57.271 29.630 0.00 0.00 0.00 0.98
3138 7322 9.983804 GAAAACGGTCTCTGGTATTATTAAAAG 57.016 33.333 0.00 0.00 0.00 2.27
3140 7324 9.901172 AAACGGTCTCTGGTATTATTAAAAGAT 57.099 29.630 0.00 0.00 0.00 2.40
3174 7360 1.935799 TGCCATTTTGCAGTATGGGT 58.064 45.000 23.08 0.00 41.32 4.51
3176 7362 3.435275 TGCCATTTTGCAGTATGGGTTA 58.565 40.909 23.08 1.68 41.32 2.85
3222 7408 9.653287 CACTTGAATACACCTTCTCAACTTATA 57.347 33.333 0.00 0.00 0.00 0.98
3287 7505 5.221601 GCCTCCTCTCAATATCACTTCATGA 60.222 44.000 0.00 0.00 43.13 3.07
3307 7525 3.255888 TGACTCGATTTCCCTATCATCCG 59.744 47.826 0.00 0.00 0.00 4.18
3383 7602 4.080299 ACATAAAGAACCCACTCCTCCATC 60.080 45.833 0.00 0.00 0.00 3.51
3414 7633 5.357032 CCTACACTGGTTTGAAAGTGAACTT 59.643 40.000 9.63 0.00 45.43 2.66
3435 7654 5.049680 ACTTTAACAAGTCTATTGTGGTGCG 60.050 40.000 0.00 0.00 39.15 5.34
3454 7702 6.375736 TGGTGCGAATTAATGTCTTTAATCCA 59.624 34.615 4.64 4.99 39.15 3.41
3457 7705 7.218204 GTGCGAATTAATGTCTTTAATCCACAC 59.782 37.037 15.51 13.31 39.15 3.82
3460 7708 9.061610 CGAATTAATGTCTTTAATCCACACAAC 57.938 33.333 4.64 0.00 39.15 3.32
3469 7717 9.906660 GTCTTTAATCCACACAACAATTAATGA 57.093 29.630 0.00 0.00 31.11 2.57
3536 7784 1.755200 TGGGCTCCTTCCCTTTTACT 58.245 50.000 0.12 0.00 46.67 2.24
3537 7785 1.354368 TGGGCTCCTTCCCTTTTACTG 59.646 52.381 0.12 0.00 46.67 2.74
3538 7786 1.341089 GGGCTCCTTCCCTTTTACTGG 60.341 57.143 0.00 0.00 43.13 4.00
3626 7875 5.776358 TGGCTAATTTCACCCCATAAAGAT 58.224 37.500 0.00 0.00 0.00 2.40
3668 7917 7.946776 CCTTCTTATCATCTGGGGTGAAATTAT 59.053 37.037 0.00 0.00 0.00 1.28
3680 7929 6.071616 TGGGGTGAAATTATAGCTTGTGAAAC 60.072 38.462 0.00 0.00 37.35 2.78
3686 7935 5.567138 ATTATAGCTTGTGAAACCAGTGC 57.433 39.130 0.00 0.00 34.36 4.40
3708 7957 5.480073 TGCTATGCAGTTTACCCATTTTCTT 59.520 36.000 0.00 0.00 33.32 2.52
3716 7965 4.799564 TTACCCATTTTCTTCATGTGCC 57.200 40.909 0.00 0.00 0.00 5.01
3820 8069 9.921637 TTTGATCAAAGTCAAACTAAACAAAGT 57.078 25.926 16.91 0.00 41.70 2.66
3821 8070 9.921637 TTGATCAAAGTCAAACTAAACAAAGTT 57.078 25.926 5.45 0.00 41.46 2.66
3895 8144 9.793259 ATATGGTATGGAAGTTAATTTCGTGAT 57.207 29.630 4.81 0.75 0.00 3.06
3896 8145 7.315247 TGGTATGGAAGTTAATTTCGTGATG 57.685 36.000 4.81 0.00 0.00 3.07
3897 8146 6.183360 TGGTATGGAAGTTAATTTCGTGATGC 60.183 38.462 4.81 1.66 0.00 3.91
3898 8147 5.895636 ATGGAAGTTAATTTCGTGATGCA 57.104 34.783 4.81 0.00 0.00 3.96
3899 8148 5.895636 TGGAAGTTAATTTCGTGATGCAT 57.104 34.783 0.00 0.00 0.00 3.96
3900 8149 5.879237 TGGAAGTTAATTTCGTGATGCATC 58.121 37.500 20.14 20.14 0.00 3.91
3901 8150 5.647658 TGGAAGTTAATTTCGTGATGCATCT 59.352 36.000 26.32 7.85 0.00 2.90
3902 8151 6.821160 TGGAAGTTAATTTCGTGATGCATCTA 59.179 34.615 26.32 11.05 0.00 1.98
3903 8152 7.335673 TGGAAGTTAATTTCGTGATGCATCTAA 59.664 33.333 26.32 15.20 0.00 2.10
3904 8153 8.345565 GGAAGTTAATTTCGTGATGCATCTAAT 58.654 33.333 26.32 16.57 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
2 3 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
3 4 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
6 7 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
7 8 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
8 9 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
9 10 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
10 11 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
11 12 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
12 13 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
13 14 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
14 15 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
15 16 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
16 17 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
17 18 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
18 19 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
19 20 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
20 21 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
21 22 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
22 23 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
23 24 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
24 25 5.177696 GGCTCGTTGATCAATAGATGGTTAC 59.822 44.000 19.51 1.79 33.72 2.50
25 26 5.163353 TGGCTCGTTGATCAATAGATGGTTA 60.163 40.000 19.51 4.65 33.72 2.85
26 27 4.130118 GGCTCGTTGATCAATAGATGGTT 58.870 43.478 19.51 0.00 33.72 3.67
27 28 3.134623 TGGCTCGTTGATCAATAGATGGT 59.865 43.478 19.51 0.00 33.72 3.55
28 29 3.732212 TGGCTCGTTGATCAATAGATGG 58.268 45.455 19.51 10.20 33.72 3.51
29 30 5.467735 TGATTGGCTCGTTGATCAATAGATG 59.532 40.000 19.51 13.10 33.72 2.90
30 31 5.614308 TGATTGGCTCGTTGATCAATAGAT 58.386 37.500 19.51 8.32 37.13 1.98
31 32 5.022282 TGATTGGCTCGTTGATCAATAGA 57.978 39.130 19.51 16.55 30.97 1.98
32 33 5.295292 AGTTGATTGGCTCGTTGATCAATAG 59.705 40.000 12.12 13.07 39.74 1.73
33 34 5.185454 AGTTGATTGGCTCGTTGATCAATA 58.815 37.500 12.12 2.38 39.74 1.90
34 35 4.012374 AGTTGATTGGCTCGTTGATCAAT 58.988 39.130 12.12 0.00 39.74 2.57
35 36 3.411446 AGTTGATTGGCTCGTTGATCAA 58.589 40.909 3.38 3.38 36.47 2.57
36 37 3.057969 AGTTGATTGGCTCGTTGATCA 57.942 42.857 0.00 0.00 0.00 2.92
37 38 4.433615 TCTAGTTGATTGGCTCGTTGATC 58.566 43.478 0.00 0.00 0.00 2.92
38 39 4.437239 CTCTAGTTGATTGGCTCGTTGAT 58.563 43.478 0.00 0.00 0.00 2.57
39 40 3.368427 CCTCTAGTTGATTGGCTCGTTGA 60.368 47.826 0.00 0.00 0.00 3.18
40 41 2.932614 CCTCTAGTTGATTGGCTCGTTG 59.067 50.000 0.00 0.00 0.00 4.10
41 42 2.678190 GCCTCTAGTTGATTGGCTCGTT 60.678 50.000 0.00 0.00 40.36 3.85
42 43 1.134670 GCCTCTAGTTGATTGGCTCGT 60.135 52.381 0.00 0.00 40.36 4.18
43 44 1.576356 GCCTCTAGTTGATTGGCTCG 58.424 55.000 0.00 0.00 40.36 5.03
46 47 4.143986 AGTAAGCCTCTAGTTGATTGGC 57.856 45.455 0.00 0.00 43.52 4.52
47 48 5.221541 CCCTAGTAAGCCTCTAGTTGATTGG 60.222 48.000 0.00 0.00 34.72 3.16
48 49 5.598830 TCCCTAGTAAGCCTCTAGTTGATTG 59.401 44.000 0.00 0.00 34.72 2.67
49 50 5.599242 GTCCCTAGTAAGCCTCTAGTTGATT 59.401 44.000 0.00 0.00 34.72 2.57
50 51 5.141910 GTCCCTAGTAAGCCTCTAGTTGAT 58.858 45.833 0.00 0.00 34.72 2.57
51 52 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
52 53 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
53 54 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
54 55 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
55 56 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
56 57 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
57 58 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
58 59 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
59 60 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
60 61 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
61 62 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
62 63 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
63 64 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
69 70 8.319752 TGGATACATAGACAACACCATGTCCC 62.320 46.154 3.95 0.00 46.44 4.46
70 71 5.396324 TGGATACATAGACAACACCATGTCC 60.396 44.000 3.95 0.00 46.44 4.02
71 72 5.670485 TGGATACATAGACAACACCATGTC 58.330 41.667 0.00 0.00 45.97 3.06
72 73 5.692115 TGGATACATAGACAACACCATGT 57.308 39.130 0.00 0.00 46.17 3.21
88 89 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
89 90 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
90 91 5.190528 AGGAAACTCAGATACATGTGTGGAT 59.809 40.000 9.11 0.00 32.90 3.41
91 92 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
92 93 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
93 94 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
94 95 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
95 96 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
96 97 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
97 98 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
105 106 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
106 107 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
109 110 9.288576 CCATGCTAGAATTGTATTGATAGGAAA 57.711 33.333 0.00 0.00 0.00 3.13
110 111 8.659527 TCCATGCTAGAATTGTATTGATAGGAA 58.340 33.333 0.00 0.00 0.00 3.36
111 112 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
120 121 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
121 122 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
172 173 9.533831 CCCTAGAGGCAATAATAAATTGGTTAT 57.466 33.333 0.00 0.00 33.58 1.89
173 174 8.934023 CCCTAGAGGCAATAATAAATTGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
174 175 7.839680 CCCTAGAGGCAATAATAAATTGGTT 57.160 36.000 0.00 0.00 0.00 3.67
190 191 4.392940 CTGTTGGAAATATGCCCTAGAGG 58.607 47.826 0.00 0.00 39.47 3.69
191 192 4.103153 TCCTGTTGGAAATATGCCCTAGAG 59.897 45.833 0.00 0.00 39.87 2.43
192 193 4.044308 TCCTGTTGGAAATATGCCCTAGA 58.956 43.478 0.00 0.00 39.87 2.43
193 194 4.392940 CTCCTGTTGGAAATATGCCCTAG 58.607 47.826 0.00 0.00 42.66 3.02
194 195 3.435026 GCTCCTGTTGGAAATATGCCCTA 60.435 47.826 0.00 0.00 42.66 3.53
195 196 2.687914 GCTCCTGTTGGAAATATGCCCT 60.688 50.000 0.00 0.00 42.66 5.19
196 197 1.683385 GCTCCTGTTGGAAATATGCCC 59.317 52.381 0.00 0.00 42.66 5.36
197 198 1.683385 GGCTCCTGTTGGAAATATGCC 59.317 52.381 0.00 0.00 42.66 4.40
198 199 1.334869 CGGCTCCTGTTGGAAATATGC 59.665 52.381 0.00 0.00 42.66 3.14
199 200 1.949525 CCGGCTCCTGTTGGAAATATG 59.050 52.381 0.00 0.00 42.66 1.78
200 201 1.133792 CCCGGCTCCTGTTGGAAATAT 60.134 52.381 0.00 0.00 42.66 1.28
201 202 0.254747 CCCGGCTCCTGTTGGAAATA 59.745 55.000 0.00 0.00 42.66 1.40
202 203 1.000896 CCCGGCTCCTGTTGGAAAT 60.001 57.895 0.00 0.00 42.66 2.17
203 204 2.434331 CCCGGCTCCTGTTGGAAA 59.566 61.111 0.00 0.00 42.66 3.13
204 205 3.646715 CCCCGGCTCCTGTTGGAA 61.647 66.667 0.00 0.00 42.66 3.53
205 206 4.649705 TCCCCGGCTCCTGTTGGA 62.650 66.667 0.00 0.00 40.69 3.53
206 207 4.101448 CTCCCCGGCTCCTGTTGG 62.101 72.222 0.00 0.00 0.00 3.77
207 208 4.101448 CCTCCCCGGCTCCTGTTG 62.101 72.222 0.00 0.00 0.00 3.33
216 217 2.679342 TTTCATCCTGCCTCCCCGG 61.679 63.158 0.00 0.00 0.00 5.73
217 218 1.452108 GTTTCATCCTGCCTCCCCG 60.452 63.158 0.00 0.00 0.00 5.73
218 219 0.332972 AAGTTTCATCCTGCCTCCCC 59.667 55.000 0.00 0.00 0.00 4.81
219 220 1.683319 GGAAGTTTCATCCTGCCTCCC 60.683 57.143 0.00 0.00 33.98 4.30
220 221 1.683319 GGGAAGTTTCATCCTGCCTCC 60.683 57.143 0.00 0.00 37.14 4.30
221 222 1.283321 AGGGAAGTTTCATCCTGCCTC 59.717 52.381 0.00 0.00 37.14 4.70
222 223 1.283321 GAGGGAAGTTTCATCCTGCCT 59.717 52.381 0.00 0.00 37.14 4.75
223 224 1.683319 GGAGGGAAGTTTCATCCTGCC 60.683 57.143 7.65 0.00 37.14 4.85
224 225 1.683319 GGGAGGGAAGTTTCATCCTGC 60.683 57.143 14.43 6.64 37.14 4.85
225 226 1.407437 CGGGAGGGAAGTTTCATCCTG 60.407 57.143 14.43 11.92 37.14 3.86
226 227 0.912486 CGGGAGGGAAGTTTCATCCT 59.088 55.000 14.43 1.69 37.14 3.24
227 228 0.748367 GCGGGAGGGAAGTTTCATCC 60.748 60.000 6.28 6.28 35.19 3.51
228 229 2.781911 GCGGGAGGGAAGTTTCATC 58.218 57.895 0.00 0.00 0.00 2.92
238 239 4.752879 TCTTTTCGCGCGGGAGGG 62.753 66.667 31.69 18.16 46.83 4.30
239 240 2.240612 CTTTCTTTTCGCGCGGGAGG 62.241 60.000 31.69 18.61 0.00 4.30
240 241 1.132640 CTTTCTTTTCGCGCGGGAG 59.867 57.895 31.69 23.36 0.00 4.30
241 242 1.289109 CTCTTTCTTTTCGCGCGGGA 61.289 55.000 31.69 23.01 0.00 5.14
242 243 1.132640 CTCTTTCTTTTCGCGCGGG 59.867 57.895 31.69 18.21 0.00 6.13
243 244 1.132640 CCTCTTTCTTTTCGCGCGG 59.867 57.895 31.69 14.23 0.00 6.46
244 245 0.093705 CTCCTCTTTCTTTTCGCGCG 59.906 55.000 26.76 26.76 0.00 6.86
245 246 1.136224 CACTCCTCTTTCTTTTCGCGC 60.136 52.381 0.00 0.00 0.00 6.86
246 247 1.136224 GCACTCCTCTTTCTTTTCGCG 60.136 52.381 0.00 0.00 0.00 5.87
247 248 1.136224 CGCACTCCTCTTTCTTTTCGC 60.136 52.381 0.00 0.00 0.00 4.70
248 249 1.461127 CCGCACTCCTCTTTCTTTTCG 59.539 52.381 0.00 0.00 0.00 3.46
249 250 1.807142 CCCGCACTCCTCTTTCTTTTC 59.193 52.381 0.00 0.00 0.00 2.29
250 251 1.143073 ACCCGCACTCCTCTTTCTTTT 59.857 47.619 0.00 0.00 0.00 2.27
251 252 0.765510 ACCCGCACTCCTCTTTCTTT 59.234 50.000 0.00 0.00 0.00 2.52
252 253 0.765510 AACCCGCACTCCTCTTTCTT 59.234 50.000 0.00 0.00 0.00 2.52
253 254 0.035458 CAACCCGCACTCCTCTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
254 255 0.955919 CCAACCCGCACTCCTCTTTC 60.956 60.000 0.00 0.00 0.00 2.62
255 256 1.073199 CCAACCCGCACTCCTCTTT 59.927 57.895 0.00 0.00 0.00 2.52
256 257 2.750350 CCAACCCGCACTCCTCTT 59.250 61.111 0.00 0.00 0.00 2.85
257 258 3.322466 CCCAACCCGCACTCCTCT 61.322 66.667 0.00 0.00 0.00 3.69
258 259 4.410400 CCCCAACCCGCACTCCTC 62.410 72.222 0.00 0.00 0.00 3.71
273 274 2.515854 GTTGAGAGGAAAAACTCCCCC 58.484 52.381 0.00 0.00 46.81 5.40
274 275 2.515854 GGTTGAGAGGAAAAACTCCCC 58.484 52.381 0.00 0.00 46.81 4.81
275 276 2.108425 AGGGTTGAGAGGAAAAACTCCC 59.892 50.000 0.00 0.00 46.81 4.30
276 277 3.181443 TGAGGGTTGAGAGGAAAAACTCC 60.181 47.826 0.00 0.00 45.81 3.85
277 278 3.815962 GTGAGGGTTGAGAGGAAAAACTC 59.184 47.826 0.00 0.00 37.77 3.01
278 279 3.459969 AGTGAGGGTTGAGAGGAAAAACT 59.540 43.478 0.00 0.00 0.00 2.66
279 280 3.821748 AGTGAGGGTTGAGAGGAAAAAC 58.178 45.455 0.00 0.00 0.00 2.43
280 281 4.166144 AGAAGTGAGGGTTGAGAGGAAAAA 59.834 41.667 0.00 0.00 0.00 1.94
281 282 3.716872 AGAAGTGAGGGTTGAGAGGAAAA 59.283 43.478 0.00 0.00 0.00 2.29
282 283 3.318313 AGAAGTGAGGGTTGAGAGGAAA 58.682 45.455 0.00 0.00 0.00 3.13
283 284 2.977808 AGAAGTGAGGGTTGAGAGGAA 58.022 47.619 0.00 0.00 0.00 3.36
284 285 2.704190 AGAAGTGAGGGTTGAGAGGA 57.296 50.000 0.00 0.00 0.00 3.71
285 286 3.165875 TGTAGAAGTGAGGGTTGAGAGG 58.834 50.000 0.00 0.00 0.00 3.69
286 287 3.194542 CCTGTAGAAGTGAGGGTTGAGAG 59.805 52.174 0.00 0.00 0.00 3.20
287 288 3.165875 CCTGTAGAAGTGAGGGTTGAGA 58.834 50.000 0.00 0.00 0.00 3.27
288 289 2.900546 ACCTGTAGAAGTGAGGGTTGAG 59.099 50.000 0.00 0.00 0.00 3.02
289 290 2.972348 ACCTGTAGAAGTGAGGGTTGA 58.028 47.619 0.00 0.00 0.00 3.18
290 291 3.403038 CAACCTGTAGAAGTGAGGGTTG 58.597 50.000 8.01 8.01 44.55 3.77
291 292 2.372172 CCAACCTGTAGAAGTGAGGGTT 59.628 50.000 0.00 0.00 37.51 4.11
292 293 1.978580 CCAACCTGTAGAAGTGAGGGT 59.021 52.381 0.00 0.00 0.00 4.34
293 294 1.279271 CCCAACCTGTAGAAGTGAGGG 59.721 57.143 0.00 0.00 0.00 4.30
294 295 2.257207 TCCCAACCTGTAGAAGTGAGG 58.743 52.381 0.00 0.00 0.00 3.86
295 296 4.065789 GTTTCCCAACCTGTAGAAGTGAG 58.934 47.826 0.00 0.00 0.00 3.51
296 297 3.456644 TGTTTCCCAACCTGTAGAAGTGA 59.543 43.478 0.00 0.00 31.02 3.41
297 298 3.815809 TGTTTCCCAACCTGTAGAAGTG 58.184 45.455 0.00 0.00 31.02 3.16
298 299 4.513406 TTGTTTCCCAACCTGTAGAAGT 57.487 40.909 0.00 0.00 31.02 3.01
299 300 6.040391 TCAAATTGTTTCCCAACCTGTAGAAG 59.960 38.462 0.00 0.00 35.44 2.85
300 301 5.894393 TCAAATTGTTTCCCAACCTGTAGAA 59.106 36.000 0.00 0.00 35.44 2.10
301 302 5.450453 TCAAATTGTTTCCCAACCTGTAGA 58.550 37.500 0.00 0.00 35.44 2.59
302 303 5.278957 CCTCAAATTGTTTCCCAACCTGTAG 60.279 44.000 0.00 0.00 35.44 2.74
303 304 4.586841 CCTCAAATTGTTTCCCAACCTGTA 59.413 41.667 0.00 0.00 35.44 2.74
304 305 3.387699 CCTCAAATTGTTTCCCAACCTGT 59.612 43.478 0.00 0.00 35.44 4.00
305 306 3.244181 CCCTCAAATTGTTTCCCAACCTG 60.244 47.826 0.00 0.00 35.44 4.00
306 307 2.972021 CCCTCAAATTGTTTCCCAACCT 59.028 45.455 0.00 0.00 35.44 3.50
307 308 2.703536 ACCCTCAAATTGTTTCCCAACC 59.296 45.455 0.00 0.00 35.44 3.77
308 309 4.126437 CAACCCTCAAATTGTTTCCCAAC 58.874 43.478 0.00 0.00 35.44 3.77
309 310 3.135530 CCAACCCTCAAATTGTTTCCCAA 59.864 43.478 0.00 0.00 37.49 4.12
310 311 2.703007 CCAACCCTCAAATTGTTTCCCA 59.297 45.455 0.00 0.00 0.00 4.37
311 312 2.969262 TCCAACCCTCAAATTGTTTCCC 59.031 45.455 0.00 0.00 0.00 3.97
312 313 3.244078 GGTCCAACCCTCAAATTGTTTCC 60.244 47.826 0.00 0.00 30.04 3.13
313 314 3.641436 AGGTCCAACCCTCAAATTGTTTC 59.359 43.478 0.00 0.00 39.75 2.78
314 315 3.653164 AGGTCCAACCCTCAAATTGTTT 58.347 40.909 0.00 0.00 39.75 2.83
315 316 3.328535 AGGTCCAACCCTCAAATTGTT 57.671 42.857 0.00 0.00 39.75 2.83
324 325 4.741928 AACAATTTAGAGGTCCAACCCT 57.258 40.909 0.00 0.00 39.75 4.34
325 326 5.801531 AAAACAATTTAGAGGTCCAACCC 57.198 39.130 0.00 0.00 39.75 4.11
326 327 6.376177 CGTAAAACAATTTAGAGGTCCAACC 58.624 40.000 0.00 0.00 33.30 3.77
327 328 6.376177 CCGTAAAACAATTTAGAGGTCCAAC 58.624 40.000 0.00 0.00 31.81 3.77
328 329 5.474189 CCCGTAAAACAATTTAGAGGTCCAA 59.526 40.000 0.00 0.00 32.34 3.53
329 330 5.005094 CCCGTAAAACAATTTAGAGGTCCA 58.995 41.667 0.00 0.00 32.34 4.02
330 331 5.005740 ACCCGTAAAACAATTTAGAGGTCC 58.994 41.667 0.00 0.00 34.66 4.46
331 332 6.564709 AACCCGTAAAACAATTTAGAGGTC 57.435 37.500 0.00 0.00 36.94 3.85
332 333 6.546772 TCAAACCCGTAAAACAATTTAGAGGT 59.453 34.615 0.00 0.00 38.40 3.85
333 334 6.972722 TCAAACCCGTAAAACAATTTAGAGG 58.027 36.000 0.00 0.00 31.81 3.69
334 335 7.081976 CCTCAAACCCGTAAAACAATTTAGAG 58.918 38.462 0.00 0.00 31.81 2.43
335 336 6.016108 CCCTCAAACCCGTAAAACAATTTAGA 60.016 38.462 0.00 0.00 31.81 2.10
336 337 6.153756 CCCTCAAACCCGTAAAACAATTTAG 58.846 40.000 0.00 0.00 31.81 1.85
337 338 5.597594 ACCCTCAAACCCGTAAAACAATTTA 59.402 36.000 0.00 0.00 0.00 1.40
338 339 4.406326 ACCCTCAAACCCGTAAAACAATTT 59.594 37.500 0.00 0.00 0.00 1.82
339 340 3.962063 ACCCTCAAACCCGTAAAACAATT 59.038 39.130 0.00 0.00 0.00 2.32
340 341 3.568443 ACCCTCAAACCCGTAAAACAAT 58.432 40.909 0.00 0.00 0.00 2.71
341 342 3.015675 ACCCTCAAACCCGTAAAACAA 57.984 42.857 0.00 0.00 0.00 2.83
342 343 2.732844 ACCCTCAAACCCGTAAAACA 57.267 45.000 0.00 0.00 0.00 2.83
343 344 4.821260 TCTAAACCCTCAAACCCGTAAAAC 59.179 41.667 0.00 0.00 0.00 2.43
344 345 5.046288 TCTAAACCCTCAAACCCGTAAAA 57.954 39.130 0.00 0.00 0.00 1.52
345 346 4.505390 CCTCTAAACCCTCAAACCCGTAAA 60.505 45.833 0.00 0.00 0.00 2.01
346 347 3.008266 CCTCTAAACCCTCAAACCCGTAA 59.992 47.826 0.00 0.00 0.00 3.18
347 348 2.568509 CCTCTAAACCCTCAAACCCGTA 59.431 50.000 0.00 0.00 0.00 4.02
348 349 1.350019 CCTCTAAACCCTCAAACCCGT 59.650 52.381 0.00 0.00 0.00 5.28
349 350 1.350019 ACCTCTAAACCCTCAAACCCG 59.650 52.381 0.00 0.00 0.00 5.28
350 351 3.520691 AACCTCTAAACCCTCAAACCC 57.479 47.619 0.00 0.00 0.00 4.11
351 352 6.066690 ACTAAAACCTCTAAACCCTCAAACC 58.933 40.000 0.00 0.00 0.00 3.27
352 353 6.996879 AGACTAAAACCTCTAAACCCTCAAAC 59.003 38.462 0.00 0.00 0.00 2.93
353 354 7.145474 AGACTAAAACCTCTAAACCCTCAAA 57.855 36.000 0.00 0.00 0.00 2.69
354 355 6.758806 AGACTAAAACCTCTAAACCCTCAA 57.241 37.500 0.00 0.00 0.00 3.02
355 356 7.093024 CCATAGACTAAAACCTCTAAACCCTCA 60.093 40.741 0.00 0.00 0.00 3.86
356 357 7.273712 CCATAGACTAAAACCTCTAAACCCTC 58.726 42.308 0.00 0.00 0.00 4.30
357 358 6.352823 GCCATAGACTAAAACCTCTAAACCCT 60.353 42.308 0.00 0.00 0.00 4.34
358 359 5.821470 GCCATAGACTAAAACCTCTAAACCC 59.179 44.000 0.00 0.00 0.00 4.11
359 360 6.651086 AGCCATAGACTAAAACCTCTAAACC 58.349 40.000 0.00 0.00 0.00 3.27
360 361 8.563123 AAAGCCATAGACTAAAACCTCTAAAC 57.437 34.615 0.00 0.00 0.00 2.01
361 362 9.582648 AAAAAGCCATAGACTAAAACCTCTAAA 57.417 29.630 0.00 0.00 0.00 1.85
407 408 9.996554 CCCTCAAATCCTTAAAAATAACTGTTT 57.003 29.630 0.00 0.00 0.00 2.83
408 409 9.154632 ACCCTCAAATCCTTAAAAATAACTGTT 57.845 29.630 0.00 0.00 0.00 3.16
409 410 8.721133 ACCCTCAAATCCTTAAAAATAACTGT 57.279 30.769 0.00 0.00 0.00 3.55
410 411 9.996554 AAACCCTCAAATCCTTAAAAATAACTG 57.003 29.630 0.00 0.00 0.00 3.16
411 412 9.996554 CAAACCCTCAAATCCTTAAAAATAACT 57.003 29.630 0.00 0.00 0.00 2.24
412 413 9.990360 TCAAACCCTCAAATCCTTAAAAATAAC 57.010 29.630 0.00 0.00 0.00 1.89
415 416 8.156820 CCTTCAAACCCTCAAATCCTTAAAAAT 58.843 33.333 0.00 0.00 0.00 1.82
416 417 7.505258 CCTTCAAACCCTCAAATCCTTAAAAA 58.495 34.615 0.00 0.00 0.00 1.94
417 418 6.463755 GCCTTCAAACCCTCAAATCCTTAAAA 60.464 38.462 0.00 0.00 0.00 1.52
418 419 5.011635 GCCTTCAAACCCTCAAATCCTTAAA 59.988 40.000 0.00 0.00 0.00 1.52
419 420 4.526650 GCCTTCAAACCCTCAAATCCTTAA 59.473 41.667 0.00 0.00 0.00 1.85
420 421 4.086457 GCCTTCAAACCCTCAAATCCTTA 58.914 43.478 0.00 0.00 0.00 2.69
421 422 2.899900 GCCTTCAAACCCTCAAATCCTT 59.100 45.455 0.00 0.00 0.00 3.36
422 423 2.110721 AGCCTTCAAACCCTCAAATCCT 59.889 45.455 0.00 0.00 0.00 3.24
423 424 2.493675 GAGCCTTCAAACCCTCAAATCC 59.506 50.000 0.00 0.00 0.00 3.01
424 425 3.425659 AGAGCCTTCAAACCCTCAAATC 58.574 45.455 0.00 0.00 0.00 2.17
425 426 3.532641 AGAGCCTTCAAACCCTCAAAT 57.467 42.857 0.00 0.00 0.00 2.32
426 427 3.394606 AGTAGAGCCTTCAAACCCTCAAA 59.605 43.478 0.00 0.00 0.00 2.69
427 428 2.979678 AGTAGAGCCTTCAAACCCTCAA 59.020 45.455 0.00 0.00 0.00 3.02
428 429 2.303022 CAGTAGAGCCTTCAAACCCTCA 59.697 50.000 0.00 0.00 0.00 3.86
429 430 2.355209 CCAGTAGAGCCTTCAAACCCTC 60.355 54.545 0.00 0.00 0.00 4.30
430 431 1.630878 CCAGTAGAGCCTTCAAACCCT 59.369 52.381 0.00 0.00 0.00 4.34
431 432 1.628846 TCCAGTAGAGCCTTCAAACCC 59.371 52.381 0.00 0.00 0.00 4.11
432 433 3.636153 ATCCAGTAGAGCCTTCAAACC 57.364 47.619 0.00 0.00 0.00 3.27
433 434 4.379918 GCAAATCCAGTAGAGCCTTCAAAC 60.380 45.833 0.00 0.00 0.00 2.93
434 435 3.758554 GCAAATCCAGTAGAGCCTTCAAA 59.241 43.478 0.00 0.00 0.00 2.69
435 436 3.009473 AGCAAATCCAGTAGAGCCTTCAA 59.991 43.478 0.00 0.00 0.00 2.69
436 437 2.573462 AGCAAATCCAGTAGAGCCTTCA 59.427 45.455 0.00 0.00 0.00 3.02
437 438 3.118445 AGAGCAAATCCAGTAGAGCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
438 439 2.843113 AGAGCAAATCCAGTAGAGCCTT 59.157 45.455 0.00 0.00 0.00 4.35
439 440 2.476199 AGAGCAAATCCAGTAGAGCCT 58.524 47.619 0.00 0.00 0.00 4.58
440 441 2.998316 AGAGCAAATCCAGTAGAGCC 57.002 50.000 0.00 0.00 0.00 4.70
441 442 7.360776 GCAATATAAGAGCAAATCCAGTAGAGC 60.361 40.741 0.00 0.00 0.00 4.09
442 443 7.658982 TGCAATATAAGAGCAAATCCAGTAGAG 59.341 37.037 0.00 0.00 34.97 2.43
443 444 7.508687 TGCAATATAAGAGCAAATCCAGTAGA 58.491 34.615 0.00 0.00 34.97 2.59
444 445 7.734924 TGCAATATAAGAGCAAATCCAGTAG 57.265 36.000 0.00 0.00 34.97 2.57
445 446 8.696043 AATGCAATATAAGAGCAAATCCAGTA 57.304 30.769 0.00 0.00 42.15 2.74
446 447 7.592885 AATGCAATATAAGAGCAAATCCAGT 57.407 32.000 0.00 0.00 42.15 4.00
447 448 7.924412 ACAAATGCAATATAAGAGCAAATCCAG 59.076 33.333 0.00 0.00 42.15 3.86
448 449 7.784037 ACAAATGCAATATAAGAGCAAATCCA 58.216 30.769 0.00 0.00 42.15 3.41
449 450 9.185192 GTACAAATGCAATATAAGAGCAAATCC 57.815 33.333 0.00 0.00 42.15 3.01
450 451 9.734620 TGTACAAATGCAATATAAGAGCAAATC 57.265 29.630 0.00 0.00 42.15 2.17
452 453 9.352784 GTTGTACAAATGCAATATAAGAGCAAA 57.647 29.630 10.51 0.00 42.15 3.68
453 454 8.518702 TGTTGTACAAATGCAATATAAGAGCAA 58.481 29.630 10.51 0.00 42.15 3.91
454 455 7.967854 GTGTTGTACAAATGCAATATAAGAGCA 59.032 33.333 10.51 0.00 43.14 4.26
455 456 8.184192 AGTGTTGTACAAATGCAATATAAGAGC 58.816 33.333 10.51 0.00 32.67 4.09
457 458 9.838975 CAAGTGTTGTACAAATGCAATATAAGA 57.161 29.630 10.51 0.00 32.67 2.10
458 459 9.075519 CCAAGTGTTGTACAAATGCAATATAAG 57.924 33.333 10.51 0.00 32.67 1.73
459 460 8.797438 TCCAAGTGTTGTACAAATGCAATATAA 58.203 29.630 10.51 0.00 32.67 0.98
460 461 8.240682 GTCCAAGTGTTGTACAAATGCAATATA 58.759 33.333 10.51 0.00 32.67 0.86
461 462 7.090173 GTCCAAGTGTTGTACAAATGCAATAT 58.910 34.615 10.51 0.00 32.67 1.28
462 463 6.039829 TGTCCAAGTGTTGTACAAATGCAATA 59.960 34.615 10.51 0.00 32.67 1.90
463 464 5.163468 TGTCCAAGTGTTGTACAAATGCAAT 60.163 36.000 10.51 0.57 32.67 3.56
530 531 1.812922 GACTGCTGCATCCTGGTCG 60.813 63.158 1.31 0.00 0.00 4.79
542 543 0.250640 CAAGCCTGTCCTTGACTGCT 60.251 55.000 6.17 6.17 43.79 4.24
588 589 2.652590 GGAAATCTCTTCTGCTGCCAT 58.347 47.619 0.00 0.00 0.00 4.40
888 4939 1.065418 GTCCCCTTCCATATATGCCGG 60.065 57.143 7.24 0.00 0.00 6.13
890 4941 1.065418 CCGTCCCCTTCCATATATGCC 60.065 57.143 7.24 0.00 0.00 4.40
930 4981 2.023741 CAATGCGATGCGGTGCTC 59.976 61.111 0.00 0.00 0.00 4.26
931 4982 4.183686 GCAATGCGATGCGGTGCT 62.184 61.111 8.67 0.00 37.75 4.40
962 5013 1.480137 CCAGAATCTCTCGGCTCAGTT 59.520 52.381 0.00 0.00 0.00 3.16
1185 5236 0.177141 CGGGCGAAGGTTGGATCTTA 59.823 55.000 0.00 0.00 0.00 2.10
1326 5377 3.072944 CTGCTTCCTCTTCTTCTTGGTG 58.927 50.000 0.00 0.00 0.00 4.17
1352 5403 2.168326 TGTCGCTGCTGATTTCTTCA 57.832 45.000 0.00 0.00 0.00 3.02
1355 5406 0.792640 CGTTGTCGCTGCTGATTTCT 59.207 50.000 0.00 0.00 0.00 2.52
1389 5443 1.121407 TGACCACCACTGTCCTCCTG 61.121 60.000 0.00 0.00 31.60 3.86
1496 5550 2.756283 CCTCGAACTCCCGCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
1503 5557 3.453679 AGCGCCTCCTCGAACTCC 61.454 66.667 2.29 0.00 0.00 3.85
1505 5559 4.443266 GCAGCGCCTCCTCGAACT 62.443 66.667 2.29 0.00 0.00 3.01
1545 5599 4.147449 TCGAGGCTGCCCATGTCG 62.147 66.667 16.57 17.80 0.00 4.35
1611 5665 1.207811 TGCATGATCTTGAAGAGGCGA 59.792 47.619 12.54 0.00 0.00 5.54
1686 5742 2.991250 ACCGATTGTTCCTCCTCAATG 58.009 47.619 0.00 0.00 34.92 2.82
1689 5745 1.480954 GCTACCGATTGTTCCTCCTCA 59.519 52.381 0.00 0.00 0.00 3.86
1698 5754 2.766263 TCTTGGATCAGCTACCGATTGT 59.234 45.455 0.00 0.00 0.00 2.71
1699 5755 3.459232 TCTTGGATCAGCTACCGATTG 57.541 47.619 0.00 0.00 0.00 2.67
1922 5978 1.094785 GTCAGTGGCAGTGTTGTTGT 58.905 50.000 21.06 0.00 0.00 3.32
1937 5993 2.094803 CAGCAGAGTACAGAGTGGTCAG 60.095 54.545 0.00 0.00 0.00 3.51
1941 5997 0.605083 TGCAGCAGAGTACAGAGTGG 59.395 55.000 0.00 0.00 0.00 4.00
1953 6009 1.964891 CAGACCACTGGTGCAGCAG 60.965 63.158 37.35 37.35 40.14 4.24
1954 6010 2.111669 CAGACCACTGGTGCAGCA 59.888 61.111 19.03 19.03 40.14 4.41
2003 6061 1.683707 TTGTGCTGCAACCACCCAA 60.684 52.632 2.77 0.00 32.30 4.12
2274 6356 1.194781 AGACTGAACCGACTGGGCAT 61.195 55.000 0.00 0.00 40.62 4.40
2315 6402 2.455674 TCCATCTCTGACAAACACGG 57.544 50.000 0.00 0.00 0.00 4.94
2316 6403 4.715896 CATTTCCATCTCTGACAAACACG 58.284 43.478 0.00 0.00 0.00 4.49
2349 6436 8.201464 TCTCTCCTGCACGATAAAATTAATACA 58.799 33.333 0.00 0.00 0.00 2.29
2389 6478 4.704103 ACAGCTCCTCCCTCGCCA 62.704 66.667 0.00 0.00 0.00 5.69
2650 6745 5.242171 AGCAAACACATGAATCAACTGATGA 59.758 36.000 0.00 0.00 43.67 2.92
2656 6751 5.978919 TCAGAAAGCAAACACATGAATCAAC 59.021 36.000 0.00 0.00 0.00 3.18
2657 6752 6.146601 TCAGAAAGCAAACACATGAATCAA 57.853 33.333 0.00 0.00 0.00 2.57
2658 6753 5.771153 TCAGAAAGCAAACACATGAATCA 57.229 34.783 0.00 0.00 0.00 2.57
2798 6974 2.436646 CTCAGGTTGCCGGCGATT 60.437 61.111 21.90 8.88 0.00 3.34
2916 7092 1.811266 GTGCGTGACCGAGATGCAT 60.811 57.895 0.00 0.00 37.65 3.96
2919 7095 1.200483 GTATGTGCGTGACCGAGATG 58.800 55.000 0.00 0.00 35.63 2.90
3092 7276 9.559958 CGTTTTCTTTTCTGTATGCTATGAATT 57.440 29.630 0.00 0.00 0.00 2.17
3103 7287 5.054477 CCAGAGACCGTTTTCTTTTCTGTA 58.946 41.667 0.00 0.00 0.00 2.74
3104 7288 3.877508 CCAGAGACCGTTTTCTTTTCTGT 59.122 43.478 0.00 0.00 0.00 3.41
3140 7324 9.117183 TGCAAAATGGCAATGCATAATTTATTA 57.883 25.926 18.22 0.00 44.52 0.98
3156 7342 4.081697 ACTTAACCCATACTGCAAAATGGC 60.082 41.667 17.76 0.00 41.19 4.40
3159 7345 9.705290 CTTTAAACTTAACCCATACTGCAAAAT 57.295 29.630 0.00 0.00 0.00 1.82
3160 7346 8.697292 ACTTTAAACTTAACCCATACTGCAAAA 58.303 29.630 0.00 0.00 0.00 2.44
3222 7408 6.935771 TGCATAGCTTCATTGAAAATGGTTTT 59.064 30.769 0.00 0.00 35.12 2.43
3287 7505 2.028930 GCGGATGATAGGGAAATCGAGT 60.029 50.000 0.00 0.00 0.00 4.18
3383 7602 3.411446 TCAAACCAGTGTAGGATGCAAG 58.589 45.455 0.00 0.00 27.52 4.01
3414 7633 4.633175 TCGCACCACAATAGACTTGTTAA 58.367 39.130 0.00 0.00 0.00 2.01
3435 7654 9.906660 TGTTGTGTGGATTAAAGACATTAATTC 57.093 29.630 0.00 0.00 42.84 2.17
3454 7702 7.591057 CGTGATCAAAGTCATTAATTGTTGTGT 59.409 33.333 0.00 0.00 0.00 3.72
3457 7705 7.304735 TCCGTGATCAAAGTCATTAATTGTTG 58.695 34.615 0.00 0.00 0.00 3.33
3460 7708 7.043854 GCATTCCGTGATCAAAGTCATTAATTG 60.044 37.037 0.00 0.00 0.00 2.32
3465 7713 3.758023 TGCATTCCGTGATCAAAGTCATT 59.242 39.130 0.00 0.00 0.00 2.57
3469 7717 3.305335 GGTTTGCATTCCGTGATCAAAGT 60.305 43.478 0.00 0.00 0.00 2.66
3536 7784 2.590611 AGTGGGGAAGTCCTAGATACCA 59.409 50.000 0.00 0.00 35.95 3.25
3537 7785 3.232662 GAGTGGGGAAGTCCTAGATACC 58.767 54.545 0.00 0.00 35.95 2.73
3538 7786 3.912248 TGAGTGGGGAAGTCCTAGATAC 58.088 50.000 0.00 0.00 35.95 2.24
3626 7875 8.548025 TGATAAGAAGGTTGATCATCCAGTAAA 58.452 33.333 22.09 7.41 0.00 2.01
3668 7917 2.638480 AGCACTGGTTTCACAAGCTA 57.362 45.000 0.00 0.00 32.25 3.32
3680 7929 2.017049 GGGTAAACTGCATAGCACTGG 58.983 52.381 0.00 0.00 33.79 4.00
3686 7935 7.156876 TGAAGAAAATGGGTAAACTGCATAG 57.843 36.000 0.00 0.00 0.00 2.23
3708 7957 0.042581 TAGGGACAGAGGGCACATGA 59.957 55.000 0.00 0.00 0.00 3.07
3716 7965 2.234908 CTGAAAGTGGTAGGGACAGAGG 59.765 54.545 0.00 0.00 0.00 3.69
3794 8043 9.921637 ACTTTGTTTAGTTTGACTTTGATCAAA 57.078 25.926 19.45 19.45 44.40 2.69
3795 8044 9.921637 AACTTTGTTTAGTTTGACTTTGATCAA 57.078 25.926 3.38 3.38 34.81 2.57
3796 8045 9.921637 AAACTTTGTTTAGTTTGACTTTGATCA 57.078 25.926 0.00 0.00 44.42 2.92
3869 8118 9.793259 ATCACGAAATTAACTTCCATACCATAT 57.207 29.630 0.00 0.00 0.00 1.78
3870 8119 9.051679 CATCACGAAATTAACTTCCATACCATA 57.948 33.333 0.00 0.00 0.00 2.74
3871 8120 7.468631 GCATCACGAAATTAACTTCCATACCAT 60.469 37.037 0.00 0.00 0.00 3.55
3872 8121 6.183360 GCATCACGAAATTAACTTCCATACCA 60.183 38.462 0.00 0.00 0.00 3.25
3873 8122 6.183360 TGCATCACGAAATTAACTTCCATACC 60.183 38.462 0.00 0.00 0.00 2.73
3874 8123 6.781138 TGCATCACGAAATTAACTTCCATAC 58.219 36.000 0.00 0.00 0.00 2.39
3875 8124 6.993786 TGCATCACGAAATTAACTTCCATA 57.006 33.333 0.00 0.00 0.00 2.74
3876 8125 5.895636 TGCATCACGAAATTAACTTCCAT 57.104 34.783 0.00 0.00 0.00 3.41
3877 8126 5.647658 AGATGCATCACGAAATTAACTTCCA 59.352 36.000 27.81 0.00 0.00 3.53
3878 8127 6.124088 AGATGCATCACGAAATTAACTTCC 57.876 37.500 27.81 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.