>input_sequence_41258
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----------ATGACGTCCACGGTGACCACGCCCACGCCCAGCCGCCCGCTCCCGGCGGGGCCCCAGCGCCGCCGGTACC
GGCCCACCGTGCTCGCCATCGCCGGCGGTAGCAAGCCGCCGCGGCGCCGGGCGCCTGCCGCCGCCACCAGCTGCGCGGCG
CTCGCGGCGCCCGAGAAGCAGAGCACGGCCACCGCTAAGATCCAACCTTCGCCCGCGCCGGTGCCGGTGCCCGAGGGCAC
GGACTACGACGAGGTGGCCGCCACGCTGGAGACGCTGTACAAGCTGAGCCCCGTCATCGTGGAGGAGGACGAGAAGAGGA
GCAAGAAGCAGGCGGCCACCAAGAAGAAGAGGAAGCAGGGGATGAAGAAATC---AGCAGCGACAACGACGACGGCGACG
CCCAGGAGGACAGTGGTGGTCAGGAGCCAGCGGCGCCGGCGGATGGACCTGGGGAAGAGGGTGGAGATGCGCGATCTGGC
CGCCGGCAAGGAGGGCGAACACCGGGACGAGGAGCGGGAGTTCGAGGAGGCGCTGCTGCGGGAGCACGCCGTGTCGACCG
ACATGGGCAGCCTCGACTGGAGGCGGATGAAGATCCCGCCGGTGCTCTCCGCCGCGCAGAGCGCTCGCCTCTTCAAGATC
ATGCAACCCATGAAGGTAATCAACCACCGATCAATTTAACTCT--TCTTGAATCTTGATTCCATTGAGGAGGAACAATCG
GTAGCTGATCCAAGAACTCGCTAGCTGAATTTAGGTGCTAAACTGAATAACTGACACACATTTCAGGCCATTTTGGAGGT
GCAAGAGAACCTGCGGAACGAGCTGCAGAGCGAGCCGACCGACGCAGAGGTCGCCGAGGCCATGAACATGCCGGTGCAGC
GGCTACGGCGGCTCCGCGACGTCGGCCGGGCGGCGAGGAACAAGCTCATCAAGGTAAACAACAACACTGCCACTGACCAC
TCTGTACTCTGC--TGCACCAGTGGTCTGGAAAAAAGATGGAATCCAACTGAAATTTGGGTTGGGTGGTTGC--------
----------------AGCACAACCTACGGCTGGTCCTGTACGCGATCAACAAGTACTACCCGGACATGACCGGCGACGA
GAGGTTCGCCGACCTGTGCCAGGCCGGCGCCAACGGGCTCATCACGGCCATCGACCGCTTCGAGCCCAAGCGCGGCTTCC
GCATCTCCACCTACGCGCTCTTCTGGATCCGCCACTCCGTCGTCCGCGCCATGACGCTCTCCAGCTTCACCCGCTTCCCA
TTCGCCATGGAATCGGTAATGCCTGCCGAGCTTGCATGCCCAGTCGGTTCAGTCTTCAGTGTT-----TTGCACATTCTG
TCCGTGTTTGTCAGAGATGGAAATGCTGAAATGTTTG--TATTAATTTTATCGTGCAGGAGAGACAGGAGATCAACATGG
CGAGGGAGGAGCTGTCGTTCGAGCTCGGGAGGACGCCGACGGACGAGGAGACGATGAAGAAAGTGGGGCTGTCGCCGGCG
AGGTACCGCGACGTGGTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGAACCGTGTCACGCAGGAGGAGCTCAT
CAAAGAGGTCACCGACGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGGCTCCTCCGCCTCGCCATTGACGACC
TCGTAATCATA------AACAACATCATCAGTTGATTCATGTGTTTGCTTTCTGAATGTTGAT-----------------
----------------------------------------------------------------TGATGATCATGTGATG
GATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGTGGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGGC
GCACGCTGAGCGAAATCGCCGGCAACCTGAGGATCTCGAGGGAGATGGTGCGCAAGTACGAGCTCAAGGCGCTCATGAAG
CTCAAGCACCCCACCCGGGTCGACTACCTACGAAGATACATGTGA-----------------------------------
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>chr1A_1_TraesCS1A01G426700
TCCAATGTCCATGGTCAGGAAACCGTAACCATCTATTGATCAACGAGCCAATCAACTAGAGGCTTACTAGGGACATGGTG
TTGTCTATGTATCCACACATGTATCTGAGTTTCCTATCAATACAATTCTAGCATGGATAATAAACGATTATCATGAACAA
GAAAATATAATAATAACCAATTTATTATTGCCTCTAGGGCATATTTCCAACAGGAGCCGGGGAGGCAGGATGAAACTTCC
CTCCCGCGCGAAAAGAAAGAGGAGTGCGGGTTGGGGGGAGTTTTTCCTCTCAACCCTCACTTCTACAGGTTGGGAAACAA
TTTGAGGGTTGGACCTCTAAATTGTTTTACGGGTTTGAGGGTTTAGAGGTTTTAGTCTATGGCTTTTTTTCGACGAAAAC
TGTAAAAAAACAGTTATTTTTAAGGATTTGAGGGTTTGAAGGCTCTACTGGATTTGCTCTTATATTGCATTTGTACAACA
CTTGGACAATCGACTTTTTTTCAAGGTGAACTTGGGCAAGTTGAAGTCGACGACCAGGATGCAGCAGTCAAGGACAGGCT
TGTGGCACTCAGATTTCGACGTATTTTCATGGCAGCAGAAGAGA-TTTCCCGTGGCAACCGAAAAGAGTTGCCAAACATT
TCGACGTAGCACTAGCACTA-------CTCCACGTCGCACTGCCATGT---------------GGGTCCCCGGAGATATC
GCGAGGCGTATGGCGACCGCT-----------------------------------------------------------
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------------------------------------------------CACGTGGCGCGCGCCTCATCCACGCACCCCCT
CCCGCGCGCGCCCGGCTCCACGCCGCCGCCCCGCGCGCCGTCCGATCCTCGGGCCTCGCCGCCTCCCGCACGTCCGATCG
CCCCGCGCCGGCTCGTGGCCGCCGTTGCTCGGCCAACCGCCGACGTACGTGTCCCGCCCCGGCATATATGGAAGGGGACG
GCCGGCAGCAGAGCAGAGCAGAGCACCGCATCGCATTGCTTCCACACGATCGAACTGAGCCGAGAGATTCTGGACTGTTC
CACACGATCCATGACGTCCACGGTGACCACGCCCACGCCCAGCCGCCCGCTCCCGGCGGGGCCCCAGCGCCGCCGGTACC
GGCCCACCGTGCTCGCCATCGCCGGCGGTAGCAAGCCGCCGCGGCGCCGGGCGCCTGCCGCCGCCACCAGCTGCGCGGCG
CTCGCGGCGCCCGAGAAGCAGAGCACGGCCACCGCTAAGATCCAACCTTCGCCCGCGCCGGTGCCGGTGCCCGAGGGCAC
GGACTACGACGAGGTGGCCGCCACGCTGGAGACGCTGTACAAGCTGAGCCCCGTCATCGTGGAGGAGGACGAGAAGAGGA
GCAAGAAGCAGGCGGCCACCAAGAAGAAGAGGAAGCAGGGGATGAAGAAATC---AGCAGCGACAACGACGACGGCGACG
CCCAGGAGGACAGTGGTGGTCAGGAGCCAGCGGCGCCGGCGGATGGACCTGGGGAAGAGGGTGGAGATGCGCGATCTGGC
CGCCGGCAAGGAGGGCGAACACCGGGACGAGGAGCGGGAGTTCGAGGAGGCGCTGCTGCGGGAGCACGCCGTGTCGACCG
ACATGGGCAGCCTCGACTGGAGGCGGATGAAGATCCCGCCGGTGCTCTCCGCCGCGCAGAGCGCTCGCCTCTTCAAGATC
ATGCAACCCATGAAGGTAATCAACCACCGATCAATTTAACTCT--TCTTGAATCTTGATTCCATTGAGGAGGAACAATCG
GTAGCTGATCCAAGAACTCGCTAGCTGAATTTAGGTGCTAAACTGAATAACTGACACACATTTCAGGCCATTTTGGAGGT
GCAAGAGAACCTGCGGAACGAGCTGCAGAGCGAGCCGACCGACGCAGAGGTCGCCGAGGCCATGAACATGCCGGTGCAGC
GGCTACGGCGGCTCCGCGACGTCGGCCGGGCGGCGAGGAACAAGCTCATCAAGGTAAACAACAACACTGCCACTGACCAC
TCTGTACTCTGC--TGCACCAGTGGTCTGGAAAAAAGATGGAATCCAACTGAAATTTGGGTTGGGTGGTTGC--------
----------------AGCACAACCTACGGCTGGTCCTGTACGCGATCAACAAGTACTACCCGGACATGACCGGCGACGA
GAGGTTCGCCGACCTGTGCCAGGCCGGCGCCAACGGGCTCATCACGGCCATCGACCGCTTCGAGCCCAAGCGCGGCTTCC
GCATCTCCACCTACGCGCTCTTCTGGATCCGCCACTCCGTCGTCCGCGCCATGACGCTCTCCAGCTTCACCCGCTTCCCA
TTCGCCATGGAATCGGTAATGCCTGCCGAGCTTGCATGCCCAGTCGGTTCAGTCTTCAGTGTT-----TTGCACATTCTG
TCCGTGTTTGTCAGAGATGGAAATGCTGAAATGTTTG--TATTAATTTTATCGTGCAGGAGAGACAGGAGATCAACATGG
CGAGGGAGGAGCTGTCGTTCGAGCTCGGGAGGACGCCGACGGACGAGGAGACGATGAAGAAAGTGGGGCTGTCGCCGGCG
AGGTACCGCGACGTGGTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGAACCGTGTCACGCAGGAGGAGCTCAT
CAAAGAGGTCACCGACGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGGCTCCTCCGCCTCGCCATTGACGACC
TCGTAATCATA------AACAACATCATCAGTTGATTCATGTGTTTGCTTTCTGAATGTTGAT-----------------
----------------------------------------------------------------TGATGATCATGTGATG
GATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGTGGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGGC
GCACGCTGAGCGAAATCGCCGGCAACCTGAGGATCTCGAGGGAGATGGTGCGCAAGTACGAGCTCAAGGCGCTCATGAAG
CTCAAGCACCCCACCCGGGTCGACTACCTACGAAGATACATGTGAAATCATATGCAT----CTCGGTCACGCACATACAT
ACCAGTTCTCTAATTTGATTATGCTGCATA----TACATTGCAAGATGGCATAGACTCATCATTGATTCCGTATTTCGGA
CATGTATATAAGTCTGTATATACGAGTGAGGTTGTATATATAATATTTGATTTAGACCTCGGGCTGATGTAGAGTAATTC
ATAGCATACAGAAAAGAAAACGGTCTCTGGTATTATTAAAAGATAATAAATTA--TGCATTGCCATTTTGCAGTATGGGT
TAAGTTTAAAGTTTAGAATACCACTTGAATACACCTTCTCAACTTATAAAA-CCATTTTCAATG----------------
---------------AAGCTATGCAAAACCAGTTGATTCAGCCTCCTCTCAATATCACTTCATGACTCGATTTCCCTATC
ATCCGCTATGCAGACAACACTGTCATGATCCTTCATGCATG-GAAAGACAATGGCAGCACATAAAGAACCCACTCCTCCA
TCTTGCATCCTACACTGGTTTGAAAGTGAACTTTAACAAGTCTATTGTGGTGCGAATTAA--------------------
---------TGTCTTTAATCCACACAACAATTAATGACTTTGATCACGGAATGCAAACCCTTGCTCAATCTTTTGGATGT
ATGTTGGGCTCCTTCCCTTTTACTGGTATCTAGGACTTCCCCACTCAACATTGTAAAGCCAAAGACATAAGAATTTGTCC
CTGTCCCT-CTTGGCTAATTTCACCCCATAAAGATTTACTGGATGATCAACCTTCTTATCATCTGGGGTGAAATTATAGC
TTGTGAAACCAGTGCTATGCAGTTTACCCATTTTCTTCATGTGCCCTCTGTCCCTACCACTTTCAGTTTCTTAGAAGATT
AATAAATACTCCCTCAGTTTCTTTTTTACTTTGCATATAAAATTTGATCAAAGTCAAACTAAACAAAGTTTGACCAAATT
TATATTAAAAAATATCAACATCTACAATACCAAAGTTATATGGTATGGAAGTTAATTTCGTGATGCATCTAATAATAT
>chr1B_456
TTATA---------------------------------------------------------------------------
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----------------------------------------------------------------TTGCATTTGTACAACA
CTTGGACAATCAAGGTTTTTTCAAAGTGAACTTGGGCAAGTTGAAGTCGAAGACCAGGATGCGGCAGTCAAGGAGAGGCT
TGTAGCACTCAGATTTCGACGTATTTTCTTGCCAGCAGAAGAGATTTTCCCGTGGCAACCGAAAAGAGTTGCCAAACATT
TCGACGTAGCACTAGCACTA-------CTCCACGTCGCACTGCCATGCGGGGCCCATCCGTCCGGGTCCCCGGAGATATC
GCGAGGCGTATGGCGACCGCGCACGTGGCGCGGGCCTCATCCACGCACCCGCTACCGCACGTGCCCCGCTCCACGCCGCC
GCCCCGCGCGCCGTCCGATCCTCAGGCCTCGCCACGCCCCGCCTGTCCGATCCCCCCATGCCGGTTTGAAATCATAGATG
GCAGACACACTATCATCATTAATCGGGATTTTTATAGGAGTATAGATAAATAACTTATTGCCTCATCATTACAAACATAA
GGGCCAATTTACACAGACACATGACCTGTCTCGTATTTGAATATATTCTAAAGAGATACATGAATGAACAAAATGACGAG
AAGTGTCAGCTAACAAAGGCGACAGCCAAATTCGAGGACAAACCACCTCATACAATCTAGAGTCCCCTATTGGCCAAAAA
GGAAAAAGGGATATCCTATTAGGTCGGAAACCGCTGGGCAATATGATCATGCAATCCTCAATTAGGATATTTGTTAGCCT
TGTACATAGTAAATAATTCATTGTGTATTTAAAAATACCGAATATAAACACATTCTAGTACATCCAAGTGCTACAGATTG
TTTCCATTAATGAATGTGGTTTTCTCAACAAAAATAGTTGTTTGATTCTATTAGGTAATCGGTCCAATTGAATATCTCAG
ACCAACTACTAAAAATAATATAATTTCAGAATAAATTTATGTTCTAATTTAGCAACATTGCATTTGTAATGATGAATGCT
TGAATTGTATCACAATGCATTTTAGCTAAAATGCACGTCGTTAATGCGTTAGATACATTAAAAAATTCTTAAAGTTGTAC
TGCTAAATGTTGCATCACTGAAAAAATTGTGTAGATTTAGTGGAATATATATAAATAAGTGAAAAAATTTAGTATAAAAA
CAAGGGTCACCAATTTCATAAAATGCAATTATGAAATATGAGAGTCATTGCAGCTGAGACAGAACAAAGTCAACCTTACT
AAGGTTCATGGAATTGTAGATAGTTTTTTTGGGGTCGATGGAAAATGTACCTTTGATGAAGAGAACTCTTAGAAAATTGT
GTGGCAAAAAACTATGGAGGTGTTTGCAGAACTTGGTTCAAAGGATCCGCAATTTACATATCGTGTTTAAGCTGATAAAG
AAGGCAGGATCAGCGCACTGATGTGGACGAGTGGGACAGTACATTGCAATACACCTTTCTTTTATATTGTGACGTTTGAT
AAGATTTACCGGACAAATCTATATGACATATGGCTTTTTGGTTATTTGTTGGGATGAACAATCATTTCCATAGCATAATC
TTGGCAGGCAAATTGGGCCGTGATGAGAAGATTGAAAGCTTTGAGTGGGTTTTTGCCAAGTTCATTAGGATGATGGGTGG
TATACCACCAAAAACAATTCTATAAGGTTTGTTTCTGTACTAAAACACTTTACTTAATTTATATGTGCTGAAACTGATTT
TTTTGGTTTCGAATGATTTGTGCAGGCCCGAATCATGCAATGAAGGTTGCCATAAAAATGGTCGCCGCCGAAACAACTGC
AACAAAGCAGCAAAGCTTAACTAAATAACAAGTGATTGATACATGGTTGATGTAATCTGTAGCTCATGGTGAAAGAGGAT
ATTTTCAGTTATGTTGTATTAAATTTTTCTAGCAGGTATGTGAACTGTGAGCCAGTGGATGTTTAGATTGGTAGCCCAGA
CTATATTATTGCAAACTTGATAGAATGCAGCTTACTGAATAAACCTAGTCCGTTGTACAGTGTAATATGAAACTGTGTTT
TCCATGCGTGTGTGTGATCGATGATTCATTTAGCTGCTCTGAATTTTGCTTGTGTGATGCGTGCTCTGAATTTGTATGGA
AATAGAATATGAGGTTTCTGCTTGCTGTATGGTCCAGAACATTAATGGTGCTTTCATTAACAACAACCACTAAGACAGGT
GCACGCATGTAGTATCTGGTGATGTTCACAGAGTACTTAGGTGGACGGATACATAAGTTGTAGCTGACGTACCCCTGCAT
TTTGCATATTCAACGTGCAAAACCTTTTTTTTTCTTTTTTATTAAGGGAAACCTCTTGTTGCGTTGACAAGGCGTACCAG
AGAAGATTGGTCGCTCCTACGGTACGGCACAATAATTGGGCTAGGATGACGAAGTTAGTCCAGAATGTCGTGGACGATGG
CCCATATCGTGTCCTCCTGTCCGAGCCACACGGGACCTGACTTGAGAGAGCAACTAGTTAACGAGCGCTTGTTCAGGAGC
CTCGCAACGATCAGCGTTATTTGTCGCGGTCTCAACCATTCGTCACGTGTTATTTAGAGTTTTCAGCTTTTTCGCAGATT
TTTTCGGGTTTTTTCGACGTTTTGGTTCTCCACCGGTCTTTGTTTGCTTTTCGATAAAAAATATATGCAAAAGAATGCGT
CTTTTTTCTTTCGCGAGAGTCATGGTTTTGCTTTTATGAGAGGCACGGTTTTGCTTTCGCGAGAGTTACGGACGTGCCTC
TCGGAAACGGGAACAAAATGTGTTTTCTGTTTTTTCTTTCTTTCGCGATAGTCACGGTTTTGCTTCCGCAAGAGGCACGG
TTGTGCTTTCACGAGAATCACGACCGTGCTTCTTGGAAACGAAAAAAACATGTTTTTTATTTATTTTTCTTTCGTGAGAG
TCATGATTTTGCTTCCACGAGAGGCACGGTTGTGCTTTCGTGAGTGTCACGGCCGTGCATCCTCGAAAACAAAAAAAAAT
GTGTTTTTCTCTTTCTTTTCCTTCCGCGAGAGTCACGGTTTTGCTTCACGCGAGAGGCATGGTTGTGATTTCGTGAGAGG
CATGGGCGTGCCTCTTTCGGAAAGGGAAAAAACCCGTGCTCCCGGTTCGGTTTTTCGTCCGGTTTTTTTCATGAAAAAAA
TATATGTGTTACTAATAGTAAACCAATTTTATTTGGAGTTTGCTTTCAGCTGAACATGTTATAACTACAAATGAGGTGAG
GCTTGATTAGGTGGCTTTGCAAGAACTAGTTCGTCAAAATCTATCAACATGGGATCTAGTTTTGAAGATCTCGACGCGGG
AAATCCAACGGTGAAAACGGTTCAAGATTTGGACACACGGTTTAAGAGATAAAACATTTTCAATAAACGGATTTATAAAA
AAAGAGAAAACTCCCAGGTTGCGACAAGTGGCGTGTTGCTTGCGACAAGTGACGCACATGCAGCACGCCACTTGTCGCAA
CCTAGGAGGTTTGAGTGATGTTTGCAATGAATACTCCTCAACTAGTGATTTCGCTGACTTGACGACATAATGTTTCTTGG
TTCACAGTTGTGGGCCATGGATATAATACAATAACACATTAATTATACCTAGCCCTATATGTGATGTGTTAGGCATCTCG
GAGTTAGACAACGGCAATGATACCGAGCTCACGGGTCATACCTATAATCCCATATTCGATCGGTTCGTGGACATGCTGAC
TAGGGATAAGTACAACATGTGGAGGTTTCGATCTAGGCTACTCTTCATCCGCGGCGGTTGATGTTCTATTACGCTGGTCC
TATATGGCTTAGCATGATGACTTCTCGACTGACTACTATAAAAAGTTTTGCCCGGCTTTAGTGAGGGATGGGCAATGACG
GCGGCGCGCCTTCGGCTCGTTTCAGTGCTTATAGTCGTCGTTAGGTGGTCTACATATCTGGATGTAAATTTTATTATTTC
TTATGTTCATTGTACTACCATAATTGAAGATCAATAGATTGAACGTTTTCTCTAAAAAAAATACGGCAGAAATCCAACCA
TTGACCATGGGCTCATCATATTGCATTGGTACAGCACTTGCACAATCAGAGTTTTTCAAGGTGAACTTGGGCAAGTTGAA
GTCGAAGACCAGGATGCAGCAGTCAAGGAGAGGCTTGTGGCGCTCAGATTTCGACGTATTTTCCCGGCAGCGGGAGAGAT
TTCCCGTGGCAATCCAAAAGAGATGCCAAACATTTCGACGTATCACCAGTAGTACTCCACGTCGCACTGCCATGCGGGGC
CCATCCGTCCGGGTCCCGGGAGATATCGCGAGGCGTATGGCGACCGCGCACGTGGCGCGCGCCTCATCCACGCACCCCCT
CCCGCGCGCGCCCGGCTCCACGCCGCCGCCCCGCGCGCCGTCCGATCTTTGCGTCTCGCGACCTCCCGCCCGTCCGATCG
CCCCGCGCCGGCTCGTGGCCGCCGTTGCTCGGCCAACCGCCGACGTACGTGTCCCGCCTCCGCATATATGGAAGGGGACG
GCCGGCAGCAGAGCAGAGCA-----CCGCATCGCACTGCTTCCACACGATCGGACTGAGCCGAGAGATTCTGGACTGTTC
CACACGATCCATGACGTCCACGGTGACCACGCCCACGCCCAGCCGCCCGCTCCCGGCGGGGCCCCAGCGGCGCCGGTACA
GGCCCACGGTGCTCGCCATCGCCGGCGGTAGCAAGCCGCCGCGCCGCCGGGCGCCCGCCGCCGCCACCAGCTGCGCGGCG
CTCGCGGCGCCCGAGAAGCAGAGCACGGCGCCCTCCAAGCTCCCTGCTCCGTC---------GCCGGCGCCCGAGGGCAC
GGACTACGACGAGGTGGCCGCCACGCTGGAGACGCTGTACAAGCTGAGCCCCGTCATCGTGGAGGAGGACGGGAAGAGGA
GCAAGAAGCAGGCGGCGACCAAGAAGAAGAGGAAGCAGGGGAGGGCGAAATCGGGAGCAGCGACGACGACGGCGGCGACG
CCGAGGAGGACAGTGGTGGTGAGGAGCCAGCGGCGGCGCCGGATGGACCTGGGGAAGCGGGTGGAGATGCGGGATCTGGC
CGCCGGCAAGGAGGACGAACACCGGGACGGGGAGCGCGCGTTCGAGGAGGCGCTGCTGCGGGAGCACGCCGTGTCGACGG
ACATGGGCAGCCTGGACTGGAGGTGGATGAAGATCCCGCCGGTGCTCTCCGCCCCGCAGAGCGCCCGCCTCTTCAAGATC
ATGCAGCCCATGAAGGTAATCAACCACGGATCAATTTAACTCTCTTCTTGAATCTTGATTCGATCGAGGAGGAGGAATCG
GTAGCTGATCCAAGAACTCGCTAGCTGTATTTAGGTGCTAAACTGAATAACTGATGCACTTTTCAGGCCATTTTGGAGGT
GCAAGAGAACCTGCGGAACGAGCTGCAGAGCGAGCCGACGGACGTGGAGGTCGCCGAGGCCATGAACATGCCGGTGCAGC
GGCTACGGCGGCTCCGCGACGTGGGCCGGGCGGCGAGGAACAAGCTCATCAAGGTAAGCAACAACACTGACATTGATCTT
TCTGTAT------------------TCTGAAAAATAGATATGATCCAACTGAAATTTGGGATGAGTGGCTGATGATGATG
GGATGGGTACTTGTATAGCACAACCTACGGCTGGTCCTGTACGCGATCAACAAGTACTACCCGGACATGACCGGCGACGA
GAGGTTCGCGGACCTGTGCCAGGCCGGCGCCAACGGGCTCATCACGGCCATCGACCGCTTCGAGCCCAAGCGCGGCTTCC
GCATCTCCACCTACGCGCTCTTCTGGATCCGCCACTCCGTCGTCCGCGCCATGACGCTCTCCAGCTTCACCCGCTTTCCG
TTCGCCATGGAATCGGTAATGCCTGCCGAGCTTGC----CCAGCCGGTTCAGTCCGTCTTCAGTGCTCT-GCACATTCTG
CTTGTGTTTGTCAGAGACAGAAATGCTGGCATGTTGTACTATAAATTTTATCGCGCAGGAGAGGCAGGAGATCAACAGGG
CGAGGGAGGAGCTGTCGTTCGAGCTCGGGAGGGCGCCGACGGACGAGGAGACGATGAAGAAAGTGGGGCTGTCGCCGGCG
AGGTACCGCGACGTGGTGCGGATGACGAGGCCCACCTACTCGCTGCACTCGCGGAACCGTGTCACGCAGGAGGAGCTCAT
CAAGGAGGTCACCGACGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGCCTCCTCCGCCTCGCCATTGACGACC
TCGTAAGCACATACAACAACATCAACATCAAGAGATTCATCTGTTTGGTTTCTTGATTTTGAT-----------------
----------------------------------------------------------------TGATGATCATGTGGTG
GATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGTGGTGATCAGGCAGAGGTTCGGGCTAGACGGCAGGGGGAGGC
GCACGCTGAGCGAGATCGCCGGCAACCTGAGGATCTCGAGGGAGATGGTGCGCAAGTACGAGCTCAAGGCGCTGATGAAG
CTCAAGCACCCCACCCGGGTCGACTACCTGCGAAGATACATGTGAAATTATCTGTATATATCTCGGTCGCGCACATACAT
ACCGGTTCTCTAATTTGATTATGCTGCATATACTTACATTGCAAGATGGCATAGACTCATCATTGATTCCGTATTTCGGA
CATGTATATAAGTCTGTATATACGAGTGAGATTGTATATATAATATTTGATTTAGACCTCGCGCTGATGTA-----ATTC
ATAGCACGCAGAAAAGAAAATGGTCTCTGGTTTATTAGA---AGAATATATAA--TGCATTACCTATTTGCAGGATGGGC
TGAGTTTAAAGTTCAGAATAGGACTTGAATACACCTCCTCAACTTAT-AAA-CCATTTTCAATG----------------
---------------AAGCTATGCAAAACCAGTTGATA------------------------------------------
---------------AACACTGTCATGATCCTTCATGCATGGGAAAGACAATGGCAGCACATAAAGAACCCACTCCTCCA
TTTTGCATCCTACACTGGTTTGAAAGTGAAATCTAACAAGTCTATTGTGGTGCTAATTAAAAGTCTTTAGTCCTTTTCAC
AAAAAAAATTGTCTTTAATCCGCAAAAAAAAAGT---CTTTGATCACGGAATGCAAACCCTTGCTTAATCTTTTGGATGT
ATGTTGGGCTCCTTCCCTTTTACC--TATCTAGGACTTCCCCACTCAACAATGTAAAGCCAAAGACATAAGAATTTGTCC
TTTGTCCTGCTTGGCTAATTTCACCCCATAAAGACTTACTGGATGATCAACCTTCTTATCATGTGGGGTGAAATTACAGC
TTGTGAAATCAGTGTTATGCAGTTTACCCATTTACTACACGTACACTCTGTCCCTACCACTTTCAGTTTCTTAGAAGATT
AATAAATACT----------------------------------------------------------------------
------------------------------------------------------------------------------
>chr1D_496
TTTTTT--------------------------------------------------------------------------
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----------------------AAGGTAAACTTGGGCAAGTTGAAGTCGAAGACCAGGATGCGGCAGTCAAGGACAGGCT
TATGGCGCTCAGATTTCGACGTATTTTCTCGGCAGCACAAGAGATTTCCT-GTGGCAAGCGAAAAGAGTTGCCAAAAATT
TCGACGTAGCACCAGCAGACAGCAGTGCTCCAAGTCGCACTGCCATGCGGGGCCCATCCGTCCGGGTCCCCGGAGATATC
GCGAGGCGTATGGCGACCGCGCACGTG-----------------------------------------------------
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------------------------------------------------------GCGCGCGCCTCATCCACGCATCCCCT
CCCGCGCGCGCCCGGCTCCACGCCGCCGCCCCGCGCGCCGTCCGATCTTTGCATCTCGCGACCTCCCGCCCGTCCGATCG
CCCCGCGCCGGCTCGTGGCCGCCGTTGCTCGGCCAACCGCCGACGTACGTGTCCGGCCTCCGCATATATGGAAGGGGACG
GCCGGCAGCAGAGCAGAGCA-----CCGCATCGCATTGCTTCCACACGATCGGACCGAGCCGAGAGATTCTGGACTGTTC
CACACGATCCATGACGTCCACGGTGACCACGCCCACGCCCAGCCGCCCGCTCCCGGCGGGGCCCCAGCGCCGCCGGTACC
GGCCCACCGTGCTCGCCATCGCCGGCGGTAGCAAGCCGCCGCGGCGCCGTGCACCGGCCGCGGCCACCAGCTGCGCGGCG
CTCGCGGCGCCCGAGAAGCAGAGCACGGCCACCGCCAAGCTGTCCACTTCGCCCGCGCCGGCTCAGGCGTCCGAGGGCAC
GGACTACGACGAGGTGGCCGCCACGCTGGAGACGCTGTACAAGCTGAGCCCCGTCATCGTGGAGGAGGACGAGAAGAGGA
GCAAGAAGCAGGCGGCAACCAAGAAGAAGAGGAAGCAGGGGAGGACGAAATCGG---CAGCGACGACGACGACGGCGACG
CCGAGGAGGACAGTGGTGGTGAGGAGCCAGCGGCGCCGGCGGATGGACCTGGGGAAGAGGGTGGAGATGCGCGATCTGGC
CGCCGGCAGGGAGGACGAACACCGGGATGGGGAGCGCGCGTTCGAGGAGGCGCTGCTGCGGGAGCACGCCGTGTCGACGG
ACATGGGCAGCCTCGACTGGAGGCGGATGAAGATCCCGCCGGTGCTCTCCGCCGCGCAGAGCGCCCGCCTCTTCAAGATC
ATGCAGCCCATGAAGGTAATCAACCACCGATCCATCTAACTCTCTTCTTGAT--TTGATTTGATCTAGGAAGAGAAATTG
GTAGCTGATCCAAGAAGTCGCTAGCTGAATTTGGGTGCTAAACTGAATTACTGACACACATTTCAGGCCATTTTGGAGGT
GCAAGAGAACCTGCGGAACGAGCTGCAGAGCGAGCCGACGGACGCAGAGGTCGCCGAGGCCATGAACATGCCGGTGCAGC
GGCTACGGCGGCTCCGCGACGTCGGCCGGGCGGCGAGGAACAAGCTCATCAAGGTAAGCAACAACACTGCCATTGATCAC
TCTGTACTTACTGTTGTACCAATGCTCTGAAAAATAGATGGAATCCAACTGAAAATTTGG--GGGTGATTGC--------
----------------AGCACAACCTACGGCTCGTCCTGTACGCGATCAACAAGTACTACCCGGACATGACCGGCGACGA
GAGGTTCGCCGACCTGTGCCAGGCCGGCGCCAACGGGCTCATCACGGCCATCGACCGCTTCGAGCCCAAGCGCGGCTTCC
GCATCTCCACCTACGCGCTCTTCTGGATCCGCCACTCCGTCGTCCGCGCCATGACGCTCTCCAGCTTCACCCGCTTCCCA
TTCGCCATGGAATCGGTAATG-------------------------------TCTTCAGTGTT-----TTACACATTCTG
TTTGTGTTTGTCAGAGATAGAAATGCTGAACTGTT-G--TATTACTTTTATCGTCCAGGAGAGACAAGAGATCAACAGGG
CTCGGGAGGAGCTGTCGTTCGAGCTCGGGAGGGCGCCGACGGACGAGGAGACGATGAAGAAAGTGGGGCTGTCGCCGGCG
AGGTACCGCGACGTGGTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGAACCGTGTCACGCAGGAGGAGCTCAT
CAAAGAGGTCACCGACGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGCCTCCTCCGCCTCGCCATCGACGACC
TCGTAAGCACA------AACAACAACATCAACATATGCATGTCTTTGGTTTCTCGTTGTTGAC-----------------
----------------------------------------------------------------AGATGATCATGTGATG
GATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGTGGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGGC
GCACGCTGAGCGAGATCGCCGGCAACCTGAGGATCTCGAGGGAGATGGTGCGCAAGTACGAGCTCAAGGCGCTCATGAAG
CTCAAGCACCCCACCCGGGTCGACTACCTACGAAGATATATGTGAAATTATCTTTATATATCTCGGTCGCGCACGTGCAT
ATAG------------------------------TACATTGCAAGATGGCATAGACTCATCATTGATTCCGTATTTCGGA
CATGTATATAAGTCTGTATATACGAGTGAGGTTGTATATATAATATTTGATTTAGACCTCGCGCTGATGTA-----ATTC
GTAGCACGCAGAAAAGAAAATGGTCTCTGGTATTATTTAAACTAATAAATCATTTTGCATTACCTATTTACAGTATGGGG
TGGATTTAAAGTTTGTAATACCACTTGAATACACCTTCTCAACTTAT-AAAACCATTTTCAATTAACCTACGCAAATCGT
TGCAAAAAACAAATTAACCTACGCAAAACCAGTTGATTCAGCCTGCTCTCAATATCACTTCATGCCTCGA-TTCCGTATC
ATCCACTATGCAGATGACACTGTCATGACCGTTCCTGCATGTGAAAGACAATGGCAGCACATAAAGAACCCACTCCTCCA
TTTTGCATCCTACACTGGTTTGAAAGTGAACTCTAA--AGTCTATTATGGTGCCAATTAAATGACTTTAGTCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr1D_2167
--------------------------------------------------------------------------------
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-------CACCTACGCGCTCTTCTGGATCTGACACTCCGTCATCCGCGCCATGACGCTCTCCAGCTTCACCCGCTTCCCG
TTTGCCATGGAATTGGTAATGCCGA--------GCTTGCCCAGTCGGTTCAGCCTTCAGTGTT-----T-GCACATTCTG
CTTGTGTTTGTCAGAGGTAGAAATGCTGAAATGCT-A--TATTGATTTTATCGT---GGAGAGGCAGGAGATCAACAGGG
CTCGGGAGGAGCTGTCGTTCGAGCTCGGGAGGGCGCCGACAGACGAGGAGACGATGAAGAAAGTGGGTCTGTTGCCCGCG
AGGTACCGCGACGTGGTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGTGGAACCGTGTCACGCAGGAGGAGCTCAT
CAAAGAGGTCACCGACGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGCCTCCTACGCCTCGCCATTGATGACC
TCGTAAGCACA------AACAACAACATCAAAATATTCATGTGTTTGGTTTCTTCCAGATACAGAGGCCGGGGGTACATC
CTCCTTTTCTAAAAAAATGTGTTTGGTTTCTTGATCGATGTGCTCGAGCTCGCATGGTTGACAATGTTGATCATGTGATG
GGTGATGCAACTGGATTCTCTGAAGCCCAAGGAGAGCGTGGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGGC
GCACACTGAGCAAGATCGCCGACAACCTAAGGATCTCGAGAGAGATGGTGCGCAAGTACGAGCTCAAGGCGCTCATGAAG
CTCAAGCACCCCACCCGGGTCGACTACCTACGAAGATACATGTGAAATCATCCGTAT----CTCGGTCACGCACATACAT
ACCAGTTCTCTAATTTGATTATGCTGCATA----TACATTGCAAGATGGCATATACTCATCATTGATTCCGTATTTCGGG
CATGTATATAAGTCTGTATATACGAGTGAAGTTGTATATATAATA-TTGATTTAGCCCTCGGGCTGATGTA-----ATTC
ATAGCACGCAGAAAATAAAATGGTCTCTGGTTTATTAGA---AGAATATGTAA--TGCATTAGCTATTTGAAGGATGTGC
TGAGTTTAAAGTTTAGAATACGACTTGAATACACCTCCTCAACTTAT-AAAACCATTTTCAATG----------------
---------------AATCTATGCAAAACCAGTTGATGCAGCCTCCTCTCAATATCACTTCATGCCTTGATTTCCCTGTC
GTCCACTATGCATACAACACTGTCATGATCCTTCATGCATGGGAAAGACAATGGCAGCACATAAAGAACCCACTCCTAAA
TTTTGCATCCTACACTGGTTTGAAAGTGAACTCTAA--AGTCTATTATGGTGCTAATTAAATGACTTTAGTCCTTTTCGC
--AAAAAAGAGTCTTTAATCCGCAAAAAACTTGATGCCGTTGATCACGGAATGCAAACCCTTGCTCAATCTTTTGGAGGT
ATGTTGGGCGCCTTCCCTTTTACC--TGTCTAGGACTTCCCCACTCAACATTGTAAAGCCAAAGACTTAAGAATTTGTCC
CTGTCCC-GCTTGCCTAATTTCACCACATAAAGACTTACTGGATGATCAACCTTCTTATCATCTGGGGTGAAATTACAGC
TTGTGAAATCAATGTTATGCAGTTTACCTTTTTTCTACATGTGCACTCTGTCGCTACCACTTTTAGTTTCTTAGAAGATT
AATAAATACT----------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----------S-SS-----------------------------------S-----------S-----------------
----------------------------S---------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------S-----------------------------------------------------------
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-----------------------------------------------S-S-S-S-----SS--------S----------
----------------------------------------------------------S-S-------------------
--------------------SSSSS---------------------------S---------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------------S---S---SSS---------------S-----S------------
--------------------------------------------------------------------------------
----------------S-------------------------S--S------------------S---------------
--S-----------------S-----------------------------------------------------------
--------------S--------------S------S-S---------------------------------------S-
----------------------------------------------------------------S---------------
-----S-------------------------------------------------------S--S--------SS-----
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
---------------------------------------------------------S--------------S---S---
--------SSSS----S----S--S----S----S-------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-SS---------------S----------------S-----------------------------------------S--
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
------S--S--------------S-----SSS--------------S-----SS-------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------S------------------------------------------------------------------
---------------------------------------------------S--S-------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SSSSS----
------SS------------S----------------S---S-S-------S---------S--SS-------------S
-S---------------------------------------------S--------------------------------
----------------------------------------------------------------S---------------
----S---------------------------------------------------------------------------
-S------------------------------S--------------------S--------------------------
---------------------S--S--S----S---S-------------------------------------------
-----------------------SSS------------------------------------------------------
----------------------------------S-----------------------------------------S---
--------S-----S---------------------S-------S-----------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGAAAGAGGAGTGCGGGTTG-----------------------------------------------
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>reverse_5236
--------------------------------------------------------------------------------
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-----------------------------------TAAGATCCAACCTTCGCCCG-------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>forward_274
--------------------------------------------------------------------------------
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--------------GAAAGAGGAGTGCGGGTTGG----------------------------------------------
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>reverse_5997
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----------------------------------------------------------------------------CCAC
TCTGTACTCTGCTGCA----------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_5246
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--------------------------GGCCACCGCTAAGATCCAAC----------------------------------
--------------------------------------------------------------------------------
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>reverse_6356
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------ATGCCCAGTCGGTTCAGTCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>forward_6022
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--TCTGTACTCTGCTGCACCAG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_7957
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------TCATGTGCCCTCTGTCCCTA------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
