Multiple sequence alignment - TraesCS1A01G420600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G420600 chr1A 100.000 3205 0 0 1 3205 577081568 577078364 0.000000e+00 5919.0
1 TraesCS1A01G420600 chr1A 86.846 745 59 18 1744 2472 577056393 577055672 0.000000e+00 797.0
2 TraesCS1A01G420600 chr1A 89.300 486 36 3 1249 1734 577063181 577062712 2.130000e-166 595.0
3 TraesCS1A01G420600 chr1A 90.698 86 8 0 1015 1100 577073632 577073547 7.270000e-22 115.0
4 TraesCS1A01G420600 chr1D 87.441 1688 136 40 836 2490 480610269 480608625 0.000000e+00 1873.0
5 TraesCS1A01G420600 chr1D 86.760 861 54 22 1 837 480611149 480610325 0.000000e+00 904.0
6 TraesCS1A01G420600 chr1B 86.205 1602 131 53 855 2429 668983395 668981857 0.000000e+00 1652.0
7 TraesCS1A01G420600 chr1B 88.500 400 19 11 1 373 668984457 668984058 2.910000e-125 459.0
8 TraesCS1A01G420600 chr1B 82.937 252 31 5 2222 2465 668972051 668971804 1.940000e-52 217.0
9 TraesCS1A01G420600 chr1B 91.954 87 6 1 752 837 668983543 668983457 1.560000e-23 121.0
10 TraesCS1A01G420600 chr1B 95.161 62 3 0 468 529 668984042 668983981 7.320000e-17 99.0
11 TraesCS1A01G420600 chr4B 77.074 663 127 19 2555 3201 146465509 146464856 3.040000e-95 359.0
12 TraesCS1A01G420600 chr4B 76.286 350 64 17 2683 3024 485062366 485062028 5.500000e-38 169.0
13 TraesCS1A01G420600 chr4B 76.176 319 51 17 2683 2991 205422966 205423269 9.270000e-31 145.0
14 TraesCS1A01G420600 chr2A 77.273 374 79 4 2683 3053 171947555 171947185 6.960000e-52 215.0
15 TraesCS1A01G420600 chr4A 76.056 426 83 16 2638 3053 100952325 100951909 1.510000e-48 204.0
16 TraesCS1A01G420600 chr3D 77.885 312 55 9 2683 2988 262264435 262264738 7.060000e-42 182.0
17 TraesCS1A01G420600 chr3D 75.403 248 46 12 1575 1812 414637792 414637550 4.370000e-19 106.0
18 TraesCS1A01G420600 chr6B 75.448 391 82 8 2638 3017 171340021 171339634 9.140000e-41 178.0
19 TraesCS1A01G420600 chr6B 80.769 182 30 5 2726 2905 332258272 332258450 1.550000e-28 137.0
20 TraesCS1A01G420600 chr2D 75.610 328 64 11 2683 3005 359248983 359249299 7.160000e-32 148.0
21 TraesCS1A01G420600 chr2B 75.380 329 66 11 2681 3002 354732706 354732386 9.270000e-31 145.0
22 TraesCS1A01G420600 chr3A 76.230 244 45 11 1575 1809 535727584 535727823 2.020000e-22 117.0
23 TraesCS1A01G420600 chr3B 75.806 248 45 12 1575 1812 540476691 540476449 9.400000e-21 111.0
24 TraesCS1A01G420600 chr6D 75.120 209 41 9 1608 1809 62270839 62271043 1.580000e-13 87.9
25 TraesCS1A01G420600 chrUn 91.489 47 4 0 3157 3203 50296739 50296785 7.420000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G420600 chr1A 577078364 577081568 3204 True 5919.00 5919 100.0000 1 3205 1 chr1A.!!$R4 3204
1 TraesCS1A01G420600 chr1A 577055672 577056393 721 True 797.00 797 86.8460 1744 2472 1 chr1A.!!$R1 728
2 TraesCS1A01G420600 chr1D 480608625 480611149 2524 True 1388.50 1873 87.1005 1 2490 2 chr1D.!!$R1 2489
3 TraesCS1A01G420600 chr1B 668981857 668984457 2600 True 582.75 1652 90.4550 1 2429 4 chr1B.!!$R2 2428
4 TraesCS1A01G420600 chr4B 146464856 146465509 653 True 359.00 359 77.0740 2555 3201 1 chr4B.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 1058 0.041238 TCACCTCCCTACTCACCCTG 59.959 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 2974 0.034186 TGTGGGGAGCATTGGATGAC 60.034 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 51 1.352156 GCACGTTCTTCCAGTAGCCG 61.352 60.000 0.00 0.00 0.00 5.52
40 52 0.736325 CACGTTCTTCCAGTAGCCGG 60.736 60.000 0.00 0.00 0.00 6.13
41 53 1.810030 CGTTCTTCCAGTAGCCGGC 60.810 63.158 21.89 21.89 0.00 6.13
42 54 1.810030 GTTCTTCCAGTAGCCGGCG 60.810 63.158 23.20 6.32 0.00 6.46
43 55 3.659089 TTCTTCCAGTAGCCGGCGC 62.659 63.158 23.20 18.42 0.00 6.53
46 58 4.826404 TCCAGTAGCCGGCGCCTA 62.826 66.667 26.68 7.43 34.57 3.93
47 59 4.286320 CCAGTAGCCGGCGCCTAG 62.286 72.222 26.68 17.17 34.57 3.02
58 70 2.831742 CGCCTAGCCGTGGACCTA 60.832 66.667 0.00 0.00 0.00 3.08
141 154 0.887836 ATGATATGTGCAGCTGCCCG 60.888 55.000 34.64 0.00 41.18 6.13
242 273 4.439968 CTTCCGTTTATACCACCCTTCTC 58.560 47.826 0.00 0.00 0.00 2.87
272 303 3.003480 GTGATCAACTAGTTCAGTGGGC 58.997 50.000 4.77 0.00 37.63 5.36
278 309 1.768870 ACTAGTTCAGTGGGCACAGTT 59.231 47.619 0.00 0.00 35.62 3.16
297 328 7.505646 CACAGTTAAAAGAAGACGAGATTCTG 58.494 38.462 0.00 0.00 37.10 3.02
358 397 3.035942 CAGTTAAAGAACAACTGCGTGC 58.964 45.455 2.59 0.00 44.49 5.34
362 401 2.405892 AAGAACAACTGCGTGCAATC 57.594 45.000 0.00 0.00 0.00 2.67
363 402 1.308047 AGAACAACTGCGTGCAATCA 58.692 45.000 0.00 0.00 0.00 2.57
373 412 1.689959 CGTGCAATCAAAGGAACAGC 58.310 50.000 0.00 0.00 0.00 4.40
375 414 1.001378 GTGCAATCAAAGGAACAGCGT 60.001 47.619 0.00 0.00 0.00 5.07
376 415 1.001487 TGCAATCAAAGGAACAGCGTG 60.001 47.619 0.00 0.00 0.00 5.34
378 417 2.653890 CAATCAAAGGAACAGCGTGTG 58.346 47.619 0.00 0.00 0.00 3.82
379 418 1.238439 ATCAAAGGAACAGCGTGTGG 58.762 50.000 0.00 0.00 0.00 4.17
381 420 0.738389 CAAAGGAACAGCGTGTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
382 421 1.134175 CAAAGGAACAGCGTGTGGTTT 59.866 47.619 0.00 0.00 0.00 3.27
384 423 0.180406 AGGAACAGCGTGTGGTTTCT 59.820 50.000 0.00 0.00 0.00 2.52
385 424 1.021968 GGAACAGCGTGTGGTTTCTT 58.978 50.000 0.00 0.00 0.00 2.52
386 425 1.404035 GGAACAGCGTGTGGTTTCTTT 59.596 47.619 0.00 0.00 0.00 2.52
387 426 2.450160 GAACAGCGTGTGGTTTCTTTG 58.550 47.619 0.00 0.00 0.00 2.77
388 427 1.745232 ACAGCGTGTGGTTTCTTTGA 58.255 45.000 0.00 0.00 0.00 2.69
389 428 1.400494 ACAGCGTGTGGTTTCTTTGAC 59.600 47.619 0.00 0.00 0.00 3.18
390 429 1.400142 CAGCGTGTGGTTTCTTTGACA 59.600 47.619 0.00 0.00 0.00 3.58
392 431 2.097466 AGCGTGTGGTTTCTTTGACAAG 59.903 45.455 0.00 0.00 0.00 3.16
393 432 2.794631 GCGTGTGGTTTCTTTGACAAGG 60.795 50.000 0.00 0.00 0.00 3.61
412 476 5.183969 CAAGGATTGTGTGTCATCTCTGAT 58.816 41.667 0.00 0.00 42.34 2.90
429 493 3.319137 TGATGAACAGAAGAGAACCGG 57.681 47.619 0.00 0.00 0.00 5.28
430 494 2.632996 TGATGAACAGAAGAGAACCGGT 59.367 45.455 0.00 0.00 0.00 5.28
442 512 1.066573 AGAACCGGTGAGCTGAGAATG 60.067 52.381 8.52 0.00 0.00 2.67
484 554 1.331680 CGCTCACAACACAACACGTAC 60.332 52.381 0.00 0.00 0.00 3.67
572 887 8.154649 TGTCACAAAGAGAAAGGAAATACTTC 57.845 34.615 0.00 0.00 0.00 3.01
589 904 9.099454 GAAATACTTCACCAGACGAATAAGAAT 57.901 33.333 0.00 0.00 0.00 2.40
590 905 9.449719 AAATACTTCACCAGACGAATAAGAATT 57.550 29.630 0.00 0.00 0.00 2.17
628 947 5.685511 CACGAGACGAAAAACAATCCATTTT 59.314 36.000 0.00 0.00 0.00 1.82
632 951 7.519032 AGACGAAAAACAATCCATTTTCCTA 57.481 32.000 0.00 0.00 40.66 2.94
633 952 8.122472 AGACGAAAAACAATCCATTTTCCTAT 57.878 30.769 0.00 0.00 40.66 2.57
635 954 7.891561 ACGAAAAACAATCCATTTTCCTATCA 58.108 30.769 0.00 0.00 40.66 2.15
685 1004 3.599704 GCCATCATGAAGGCGCCC 61.600 66.667 24.89 9.73 41.70 6.13
686 1005 2.908940 CCATCATGAAGGCGCCCC 60.909 66.667 26.15 16.67 0.00 5.80
687 1006 2.124193 CATCATGAAGGCGCCCCA 60.124 61.111 26.15 22.33 0.00 4.96
688 1007 2.124151 ATCATGAAGGCGCCCCAC 60.124 61.111 26.15 15.52 0.00 4.61
689 1008 2.982643 ATCATGAAGGCGCCCCACA 61.983 57.895 26.15 20.97 0.00 4.17
690 1009 3.443045 CATGAAGGCGCCCCACAC 61.443 66.667 26.15 10.85 0.00 3.82
704 1023 1.067142 CCCACACGAAGAATTCCTCGA 60.067 52.381 28.38 0.00 43.81 4.04
706 1025 1.656095 CACACGAAGAATTCCTCGAGC 59.344 52.381 28.38 0.00 43.81 5.03
708 1027 2.189342 CACGAAGAATTCCTCGAGCTC 58.811 52.381 28.38 2.73 43.81 4.09
719 1038 1.569708 CTCGAGCTCCTTTGCATCTC 58.430 55.000 8.47 0.00 34.99 2.75
724 1043 1.065564 AGCTCCTTTGCATCTCTCACC 60.066 52.381 0.00 0.00 34.99 4.02
729 1048 1.558756 CTTTGCATCTCTCACCTCCCT 59.441 52.381 0.00 0.00 0.00 4.20
738 1057 0.336737 CTCACCTCCCTACTCACCCT 59.663 60.000 0.00 0.00 0.00 4.34
739 1058 0.041238 TCACCTCCCTACTCACCCTG 59.959 60.000 0.00 0.00 0.00 4.45
740 1059 1.306226 ACCTCCCTACTCACCCTGC 60.306 63.158 0.00 0.00 0.00 4.85
741 1060 2.066999 CCTCCCTACTCACCCTGCC 61.067 68.421 0.00 0.00 0.00 4.85
742 1061 1.002274 CTCCCTACTCACCCTGCCT 59.998 63.158 0.00 0.00 0.00 4.75
743 1062 0.618968 CTCCCTACTCACCCTGCCTT 60.619 60.000 0.00 0.00 0.00 4.35
744 1063 0.178873 TCCCTACTCACCCTGCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
745 1064 0.253327 CCCTACTCACCCTGCCTTTC 59.747 60.000 0.00 0.00 0.00 2.62
746 1065 0.253327 CCTACTCACCCTGCCTTTCC 59.747 60.000 0.00 0.00 0.00 3.13
747 1066 1.280457 CTACTCACCCTGCCTTTCCT 58.720 55.000 0.00 0.00 0.00 3.36
748 1067 1.208293 CTACTCACCCTGCCTTTCCTC 59.792 57.143 0.00 0.00 0.00 3.71
749 1068 0.474660 ACTCACCCTGCCTTTCCTCT 60.475 55.000 0.00 0.00 0.00 3.69
750 1069 0.251634 CTCACCCTGCCTTTCCTCTC 59.748 60.000 0.00 0.00 0.00 3.20
786 1105 4.889995 ACCTTTGGCTTAATCTATTGCTCC 59.110 41.667 0.00 0.00 0.00 4.70
796 1115 4.744795 ATCTATTGCTCCTTGTCTCGTT 57.255 40.909 0.00 0.00 0.00 3.85
802 1121 1.941668 GCTCCTTGTCTCGTTTCCCTG 60.942 57.143 0.00 0.00 0.00 4.45
824 1144 0.319083 CCTGCATTGCAAAGCTCCAA 59.681 50.000 25.26 6.25 38.41 3.53
831 1151 2.555547 GCAAAGCTCCAACGCTGGT 61.556 57.895 4.46 0.00 43.97 4.00
832 1152 2.032981 CAAAGCTCCAACGCTGGTT 58.967 52.632 4.46 0.00 43.97 3.67
847 1224 1.304134 GGTTTCCCCGATGGTGCTT 60.304 57.895 0.00 0.00 34.77 3.91
866 1243 3.853487 TCGGCGGATGCAGATGCT 61.853 61.111 7.21 0.00 45.35 3.79
895 1272 5.122512 TGACTGAACTGTACTTGAGCTAC 57.877 43.478 0.00 0.00 0.00 3.58
946 1323 3.930336 TCACTCCACACTTGATAAGCTG 58.070 45.455 0.00 0.00 0.00 4.24
952 1329 4.584325 TCCACACTTGATAAGCTGCTTTTT 59.416 37.500 21.29 8.71 0.00 1.94
975 1360 1.688735 TCTCTGTCTCCAAGTGGTGTG 59.311 52.381 0.00 0.00 36.34 3.82
1105 1490 3.864243 TCGACTACTCTCTCAAGTCTCC 58.136 50.000 0.00 0.00 37.97 3.71
1108 1493 4.638421 CGACTACTCTCTCAAGTCTCCATT 59.362 45.833 0.00 0.00 37.97 3.16
1113 1498 9.127277 ACTACTCTCTCAAGTCTCCATTTATAC 57.873 37.037 0.00 0.00 0.00 1.47
1137 1522 2.734670 CGTTCGTCTGTCAGTTGGTTA 58.265 47.619 0.00 0.00 0.00 2.85
1156 1559 4.546570 GTTATGTTTGGTTGTTGGAGCTC 58.453 43.478 4.71 4.71 0.00 4.09
1159 1562 1.067060 GTTTGGTTGTTGGAGCTCACC 59.933 52.381 17.19 14.34 0.00 4.02
1189 1594 1.961394 AGTAGTTGGAGCTGACGAACA 59.039 47.619 0.00 0.00 32.44 3.18
1206 1611 0.179056 ACAAACCACCAGAGTGTCGG 60.179 55.000 0.00 0.00 42.88 4.79
1235 1640 3.300009 CAACAGACAAACGGATGCTTTC 58.700 45.455 0.00 0.00 0.00 2.62
1236 1641 2.851195 ACAGACAAACGGATGCTTTCT 58.149 42.857 0.00 0.00 0.00 2.52
1237 1642 2.549754 ACAGACAAACGGATGCTTTCTG 59.450 45.455 0.00 0.00 36.02 3.02
1239 1644 2.808543 AGACAAACGGATGCTTTCTGTC 59.191 45.455 2.73 9.14 43.40 3.51
1242 1647 1.714794 AACGGATGCTTTCTGTCGAG 58.285 50.000 2.73 0.00 43.40 4.04
1247 1653 3.000724 CGGATGCTTTCTGTCGAGAAATC 59.999 47.826 0.83 0.00 45.25 2.17
1248 1654 4.187694 GGATGCTTTCTGTCGAGAAATCT 58.812 43.478 0.83 0.00 45.25 2.40
1252 1658 5.784177 TGCTTTCTGTCGAGAAATCTAGTT 58.216 37.500 0.83 0.00 45.25 2.24
1253 1659 5.635280 TGCTTTCTGTCGAGAAATCTAGTTG 59.365 40.000 0.83 0.00 45.25 3.16
1259 1665 6.431543 TCTGTCGAGAAATCTAGTTGAACTCT 59.568 38.462 0.00 0.00 0.00 3.24
1262 1668 6.745450 GTCGAGAAATCTAGTTGAACTCTCAG 59.255 42.308 0.00 0.00 36.79 3.35
1271 1677 7.556844 TCTAGTTGAACTCTCAGAACAAAACT 58.443 34.615 0.00 0.00 31.69 2.66
1272 1678 6.670077 AGTTGAACTCTCAGAACAAAACTC 57.330 37.500 0.00 0.00 31.69 3.01
1301 1707 9.669353 CTTTTGCTCGCTTAATGATGTAATAAT 57.331 29.630 0.00 0.00 0.00 1.28
1305 1711 8.445493 TGCTCGCTTAATGATGTAATAATGATG 58.555 33.333 0.00 0.00 0.00 3.07
1309 1715 9.628983 CGCTTAATGATGTAATAATGATGATCG 57.371 33.333 0.00 0.00 0.00 3.69
1310 1716 9.926751 GCTTAATGATGTAATAATGATGATCGG 57.073 33.333 0.00 0.00 0.00 4.18
1318 1724 7.505258 TGTAATAATGATGATCGGACCAAGAA 58.495 34.615 0.00 0.00 0.00 2.52
1319 1725 8.156820 TGTAATAATGATGATCGGACCAAGAAT 58.843 33.333 0.00 0.00 0.00 2.40
1320 1726 9.003658 GTAATAATGATGATCGGACCAAGAATT 57.996 33.333 0.00 0.00 0.00 2.17
1321 1727 8.469309 AATAATGATGATCGGACCAAGAATTT 57.531 30.769 0.00 0.00 0.00 1.82
1322 1728 6.382869 AATGATGATCGGACCAAGAATTTC 57.617 37.500 0.00 0.00 0.00 2.17
1323 1729 3.871006 TGATGATCGGACCAAGAATTTCG 59.129 43.478 0.00 0.00 0.00 3.46
1324 1730 3.328382 TGATCGGACCAAGAATTTCGT 57.672 42.857 0.00 0.00 0.00 3.85
1325 1731 3.000041 TGATCGGACCAAGAATTTCGTG 59.000 45.455 5.47 5.47 0.00 4.35
1326 1732 1.153353 TCGGACCAAGAATTTCGTGC 58.847 50.000 6.79 0.00 0.00 5.34
1327 1733 0.179225 CGGACCAAGAATTTCGTGCG 60.179 55.000 6.79 4.95 34.34 5.34
1328 1734 0.168128 GGACCAAGAATTTCGTGCGG 59.832 55.000 6.79 1.82 0.00 5.69
1329 1735 0.454452 GACCAAGAATTTCGTGCGGC 60.454 55.000 6.79 0.00 0.00 6.53
1330 1736 0.889186 ACCAAGAATTTCGTGCGGCT 60.889 50.000 6.79 0.00 0.00 5.52
1331 1737 0.454957 CCAAGAATTTCGTGCGGCTG 60.455 55.000 6.79 0.00 0.00 4.85
1351 1757 2.031769 TGCTCGTGCTGATTTCAGTTTG 60.032 45.455 11.19 0.29 45.45 2.93
1352 1758 2.031682 GCTCGTGCTGATTTCAGTTTGT 60.032 45.455 9.21 0.00 45.45 2.83
1353 1759 3.548818 GCTCGTGCTGATTTCAGTTTGTT 60.549 43.478 9.21 0.00 45.45 2.83
1354 1760 4.601019 CTCGTGCTGATTTCAGTTTGTTT 58.399 39.130 9.21 0.00 45.45 2.83
1355 1761 4.350346 TCGTGCTGATTTCAGTTTGTTTG 58.650 39.130 9.21 0.00 45.45 2.93
1356 1762 4.095632 TCGTGCTGATTTCAGTTTGTTTGA 59.904 37.500 9.21 0.00 45.45 2.69
1357 1763 4.977963 CGTGCTGATTTCAGTTTGTTTGAT 59.022 37.500 9.21 0.00 45.45 2.57
1358 1764 5.459762 CGTGCTGATTTCAGTTTGTTTGATT 59.540 36.000 9.21 0.00 45.45 2.57
1365 1771 4.974368 TCAGTTTGTTTGATTGGTTCGT 57.026 36.364 0.00 0.00 0.00 3.85
1368 1774 3.119316 AGTTTGTTTGATTGGTTCGTGCA 60.119 39.130 0.00 0.00 0.00 4.57
1371 1777 0.040514 TTTGATTGGTTCGTGCAGCG 60.041 50.000 0.00 0.00 43.01 5.18
1373 1779 2.281484 ATTGGTTCGTGCAGCGGT 60.281 55.556 8.46 0.00 41.72 5.68
1476 1882 4.778415 CCGGAGCTGGACGTGACG 62.778 72.222 2.24 2.24 0.00 4.35
1818 2224 2.362369 CGATCCCAGCACCACCTCT 61.362 63.158 0.00 0.00 0.00 3.69
1836 2242 1.985159 TCTTGCAAGTACCCATCCACT 59.015 47.619 25.19 0.00 0.00 4.00
1883 2297 4.602159 CATGGTGCATGCAAACCC 57.398 55.556 24.58 20.07 35.02 4.11
1885 2299 0.250793 CATGGTGCATGCAAACCCAT 59.749 50.000 27.25 27.25 35.02 4.00
1904 2318 6.920817 ACCCATAATTTCTTCCGTTTTCTTC 58.079 36.000 0.00 0.00 0.00 2.87
2215 2636 3.985008 TGTGCAAGTAAGAAGCGAAGTA 58.015 40.909 0.00 0.00 0.00 2.24
2254 2675 1.870055 CGCAAATGCACTTGGAGGCT 61.870 55.000 10.28 0.00 42.21 4.58
2256 2677 1.250328 CAAATGCACTTGGAGGCTGA 58.750 50.000 0.00 0.00 0.00 4.26
2258 2679 1.542492 AATGCACTTGGAGGCTGAAG 58.458 50.000 0.00 0.00 0.00 3.02
2261 2682 1.239968 GCACTTGGAGGCTGAAGTGG 61.240 60.000 25.96 14.55 46.13 4.00
2262 2683 0.607489 CACTTGGAGGCTGAAGTGGG 60.607 60.000 20.84 4.37 43.55 4.61
2385 2814 3.976793 AGTCAGTCAGTGTTGCAAATG 57.023 42.857 0.00 0.43 0.00 2.32
2393 2822 5.125417 AGTCAGTGTTGCAAATGTTTGTAGT 59.875 36.000 0.00 0.00 40.24 2.73
2453 2885 2.230992 TGGGATGTTTGTACTTGCATGC 59.769 45.455 11.82 11.82 0.00 4.06
2465 2897 2.620115 ACTTGCATGCCATATTTCTCCG 59.380 45.455 16.68 0.00 0.00 4.63
2472 2904 2.290641 TGCCATATTTCTCCGTTGTGGT 60.291 45.455 0.00 0.00 39.52 4.16
2473 2905 2.354821 GCCATATTTCTCCGTTGTGGTC 59.645 50.000 0.00 0.00 39.52 4.02
2474 2906 3.873910 CCATATTTCTCCGTTGTGGTCT 58.126 45.455 0.00 0.00 39.52 3.85
2475 2907 3.623060 CCATATTTCTCCGTTGTGGTCTG 59.377 47.826 0.00 0.00 39.52 3.51
2478 2910 4.996976 CTCCGTTGTGGTCTGGAG 57.003 61.111 0.00 0.00 41.82 3.86
2479 2911 1.185618 TCTCCGTTGTGGTCTGGAGG 61.186 60.000 7.23 0.00 46.42 4.30
2480 2912 1.152419 TCCGTTGTGGTCTGGAGGA 60.152 57.895 0.00 0.00 39.52 3.71
2481 2913 1.185618 TCCGTTGTGGTCTGGAGGAG 61.186 60.000 0.00 0.00 39.52 3.69
2482 2914 1.185618 CCGTTGTGGTCTGGAGGAGA 61.186 60.000 0.00 0.00 0.00 3.71
2484 2916 1.070134 CGTTGTGGTCTGGAGGAGAAA 59.930 52.381 0.00 0.00 30.26 2.52
2486 2918 3.756117 GTTGTGGTCTGGAGGAGAAAAT 58.244 45.455 0.00 0.00 30.26 1.82
2487 2919 4.562757 CGTTGTGGTCTGGAGGAGAAAATA 60.563 45.833 0.00 0.00 30.26 1.40
2488 2920 5.501156 GTTGTGGTCTGGAGGAGAAAATAT 58.499 41.667 0.00 0.00 30.26 1.28
2489 2921 6.629515 CGTTGTGGTCTGGAGGAGAAAATATA 60.630 42.308 0.00 0.00 30.26 0.86
2490 2922 6.884472 TGTGGTCTGGAGGAGAAAATATAA 57.116 37.500 0.00 0.00 30.26 0.98
2491 2923 7.451731 TGTGGTCTGGAGGAGAAAATATAAT 57.548 36.000 0.00 0.00 30.26 1.28
2492 2924 8.561536 TGTGGTCTGGAGGAGAAAATATAATA 57.438 34.615 0.00 0.00 30.26 0.98
2493 2925 8.429641 TGTGGTCTGGAGGAGAAAATATAATAC 58.570 37.037 0.00 0.00 30.26 1.89
2494 2926 7.878644 GTGGTCTGGAGGAGAAAATATAATACC 59.121 40.741 0.00 0.00 30.26 2.73
2495 2927 7.570982 TGGTCTGGAGGAGAAAATATAATACCA 59.429 37.037 0.00 0.00 30.26 3.25
2496 2928 8.606830 GGTCTGGAGGAGAAAATATAATACCAT 58.393 37.037 0.00 0.00 30.26 3.55
2497 2929 9.660180 GTCTGGAGGAGAAAATATAATACCATC 57.340 37.037 0.00 0.00 30.26 3.51
2498 2930 9.621239 TCTGGAGGAGAAAATATAATACCATCT 57.379 33.333 0.00 0.00 0.00 2.90
2509 2941 8.863872 AATATAATACCATCTTGTACAAGGGC 57.136 34.615 30.35 0.00 38.88 5.19
2510 2942 4.584638 AATACCATCTTGTACAAGGGCA 57.415 40.909 30.35 18.12 38.88 5.36
2511 2943 4.796110 ATACCATCTTGTACAAGGGCAT 57.204 40.909 30.35 19.34 38.88 4.40
2512 2944 3.004752 ACCATCTTGTACAAGGGCATC 57.995 47.619 30.35 0.00 38.88 3.91
2513 2945 2.578021 ACCATCTTGTACAAGGGCATCT 59.422 45.455 30.35 9.99 38.88 2.90
2514 2946 3.010584 ACCATCTTGTACAAGGGCATCTT 59.989 43.478 30.35 9.68 38.88 2.40
2515 2947 3.629398 CCATCTTGTACAAGGGCATCTTC 59.371 47.826 30.35 0.00 38.88 2.87
2516 2948 4.264253 CATCTTGTACAAGGGCATCTTCA 58.736 43.478 30.35 12.12 38.88 3.02
2517 2949 4.574674 TCTTGTACAAGGGCATCTTCAT 57.425 40.909 30.35 0.00 38.88 2.57
2518 2950 4.264253 TCTTGTACAAGGGCATCTTCATG 58.736 43.478 30.35 6.10 38.88 3.07
2519 2951 5.402562 TCTTGTACAAGGGCATCTTCATGC 61.403 45.833 30.35 0.00 44.28 4.06
2520 2952 7.560379 TCTTGTACAAGGGCATCTTCATGCT 62.560 44.000 30.35 0.00 44.35 3.79
2531 2963 5.578005 CATCTTCATGCTGACCTCAAAAT 57.422 39.130 0.00 0.00 0.00 1.82
2532 2964 5.340803 CATCTTCATGCTGACCTCAAAATG 58.659 41.667 0.00 0.00 0.00 2.32
2533 2965 3.192001 TCTTCATGCTGACCTCAAAATGC 59.808 43.478 0.00 0.00 0.00 3.56
2534 2966 2.516906 TCATGCTGACCTCAAAATGCA 58.483 42.857 0.00 0.00 34.88 3.96
2535 2967 2.490509 TCATGCTGACCTCAAAATGCAG 59.509 45.455 0.00 0.00 33.87 4.41
2536 2968 2.275134 TGCTGACCTCAAAATGCAGA 57.725 45.000 0.00 0.00 0.00 4.26
2537 2969 2.585330 TGCTGACCTCAAAATGCAGAA 58.415 42.857 0.00 0.00 0.00 3.02
2538 2970 2.957680 TGCTGACCTCAAAATGCAGAAA 59.042 40.909 0.00 0.00 0.00 2.52
2539 2971 3.243501 TGCTGACCTCAAAATGCAGAAAC 60.244 43.478 0.00 0.00 0.00 2.78
2540 2972 3.858503 GCTGACCTCAAAATGCAGAAACC 60.859 47.826 0.00 0.00 0.00 3.27
2541 2973 2.293122 TGACCTCAAAATGCAGAAACCG 59.707 45.455 0.00 0.00 0.00 4.44
2542 2974 1.613437 ACCTCAAAATGCAGAAACCGG 59.387 47.619 0.00 0.00 0.00 5.28
2543 2975 1.613437 CCTCAAAATGCAGAAACCGGT 59.387 47.619 0.00 0.00 0.00 5.28
2544 2976 2.351738 CCTCAAAATGCAGAAACCGGTC 60.352 50.000 8.04 0.00 0.00 4.79
2545 2977 2.293122 CTCAAAATGCAGAAACCGGTCA 59.707 45.455 8.04 0.07 0.00 4.02
2546 2978 2.890311 TCAAAATGCAGAAACCGGTCAT 59.110 40.909 8.04 3.19 0.00 3.06
2547 2979 3.057596 TCAAAATGCAGAAACCGGTCATC 60.058 43.478 8.04 10.19 0.00 2.92
2548 2980 1.463674 AATGCAGAAACCGGTCATCC 58.536 50.000 8.04 0.00 0.00 3.51
2549 2981 0.327924 ATGCAGAAACCGGTCATCCA 59.672 50.000 8.04 4.70 0.00 3.41
2550 2982 0.109532 TGCAGAAACCGGTCATCCAA 59.890 50.000 8.04 0.00 0.00 3.53
2551 2983 1.271871 TGCAGAAACCGGTCATCCAAT 60.272 47.619 8.04 0.00 0.00 3.16
2552 2984 1.133025 GCAGAAACCGGTCATCCAATG 59.867 52.381 8.04 5.68 0.00 2.82
2553 2985 1.133025 CAGAAACCGGTCATCCAATGC 59.867 52.381 8.04 0.00 0.00 3.56
2557 2989 1.526917 CCGGTCATCCAATGCTCCC 60.527 63.158 0.00 0.00 0.00 4.30
2560 2992 0.753111 GGTCATCCAATGCTCCCCAC 60.753 60.000 0.00 0.00 0.00 4.61
2573 3005 4.352009 TGCTCCCCACATACATTTCAAAT 58.648 39.130 0.00 0.00 0.00 2.32
2581 3013 8.754080 CCCCACATACATTTCAAATAAGGTTTA 58.246 33.333 0.00 0.00 0.00 2.01
2610 3043 4.811969 AGACGTAATTCATACACACCCA 57.188 40.909 0.00 0.00 33.89 4.51
2612 3045 5.741011 AGACGTAATTCATACACACCCAAT 58.259 37.500 0.00 0.00 33.89 3.16
2623 3056 4.540359 ACACACCCAATGGATTTTCATG 57.460 40.909 0.00 0.00 34.81 3.07
2627 3060 6.042552 ACACACCCAATGGATTTTCATGTAAA 59.957 34.615 0.00 0.00 34.81 2.01
2628 3061 6.368516 CACACCCAATGGATTTTCATGTAAAC 59.631 38.462 0.00 0.00 34.81 2.01
2630 3063 5.545723 ACCCAATGGATTTTCATGTAAACCA 59.454 36.000 15.82 15.82 34.81 3.67
2631 3064 6.043706 ACCCAATGGATTTTCATGTAAACCAA 59.956 34.615 16.77 0.00 34.81 3.67
2633 3066 7.446625 CCCAATGGATTTTCATGTAAACCAAAA 59.553 33.333 16.77 6.68 0.00 2.44
2646 3079 8.707839 CATGTAAACCAAAACACATTCATTACC 58.292 33.333 0.00 0.00 29.31 2.85
2651 3084 6.155827 ACCAAAACACATTCATTACCATTCG 58.844 36.000 0.00 0.00 0.00 3.34
2660 3093 8.187480 CACATTCATTACCATTCGGACATTTTA 58.813 33.333 0.00 0.00 35.59 1.52
2661 3094 8.912988 ACATTCATTACCATTCGGACATTTTAT 58.087 29.630 0.00 0.00 35.59 1.40
2662 3095 9.748708 CATTCATTACCATTCGGACATTTTATT 57.251 29.630 0.00 0.00 35.59 1.40
2670 3104 9.801873 ACCATTCGGACATTTTATTATGAAAAG 57.198 29.630 0.00 0.00 32.12 2.27
2674 3108 7.703328 TCGGACATTTTATTATGAAAAGGAGC 58.297 34.615 0.83 0.00 34.53 4.70
2675 3109 7.338196 TCGGACATTTTATTATGAAAAGGAGCA 59.662 33.333 0.83 0.00 34.53 4.26
2682 3116 0.678048 ATGAAAAGGAGCAGCCGGAC 60.678 55.000 5.05 0.00 43.43 4.79
2698 3132 2.555757 CCGGACCTAAACCTATCCTACG 59.444 54.545 0.00 0.00 0.00 3.51
2699 3133 3.480470 CGGACCTAAACCTATCCTACGA 58.520 50.000 0.00 0.00 0.00 3.43
2702 3136 3.217626 ACCTAAACCTATCCTACGACGG 58.782 50.000 0.00 0.00 0.00 4.79
2703 3137 2.030451 CCTAAACCTATCCTACGACGGC 60.030 54.545 0.00 0.00 0.00 5.68
2704 3138 1.477553 AAACCTATCCTACGACGGCA 58.522 50.000 0.00 0.00 0.00 5.69
2705 3139 0.743097 AACCTATCCTACGACGGCAC 59.257 55.000 0.00 0.00 0.00 5.01
2706 3140 1.105759 ACCTATCCTACGACGGCACC 61.106 60.000 0.00 0.00 0.00 5.01
2719 3153 1.373812 GGCACCCGTAGTCCACTTT 59.626 57.895 0.00 0.00 0.00 2.66
2723 3157 2.413837 CACCCGTAGTCCACTTTCTTG 58.586 52.381 0.00 0.00 0.00 3.02
2735 3169 4.943705 TCCACTTTCTTGGTATTCTGCATC 59.056 41.667 0.00 0.00 37.93 3.91
2736 3170 4.701651 CCACTTTCTTGGTATTCTGCATCA 59.298 41.667 0.00 0.00 0.00 3.07
2738 3172 5.413833 CACTTTCTTGGTATTCTGCATCAGT 59.586 40.000 0.00 0.00 32.61 3.41
2739 3173 6.595326 CACTTTCTTGGTATTCTGCATCAGTA 59.405 38.462 0.00 0.00 32.61 2.74
2748 3182 1.616374 TCTGCATCAGTAACCACGTCA 59.384 47.619 0.00 0.00 32.61 4.35
2750 3184 2.345876 TGCATCAGTAACCACGTCATG 58.654 47.619 0.00 0.00 0.00 3.07
2756 3190 3.445805 TCAGTAACCACGTCATGCATCTA 59.554 43.478 0.00 0.00 0.00 1.98
2758 3192 4.811024 CAGTAACCACGTCATGCATCTATT 59.189 41.667 0.00 0.00 0.00 1.73
2763 3197 3.873361 CCACGTCATGCATCTATTGTCTT 59.127 43.478 0.00 0.00 0.00 3.01
2770 3204 6.482641 GTCATGCATCTATTGTCTTCATGAGT 59.517 38.462 0.00 0.00 39.29 3.41
2773 3207 4.024218 GCATCTATTGTCTTCATGAGTGCC 60.024 45.833 0.00 0.00 0.00 5.01
2774 3208 3.785486 TCTATTGTCTTCATGAGTGCCG 58.215 45.455 0.00 0.00 0.00 5.69
2776 3210 0.684535 TTGTCTTCATGAGTGCCGGA 59.315 50.000 5.05 0.00 0.00 5.14
2777 3211 0.904649 TGTCTTCATGAGTGCCGGAT 59.095 50.000 5.05 0.00 0.00 4.18
2781 3215 2.203252 CATGAGTGCCGGATGGGG 60.203 66.667 5.05 0.00 35.78 4.96
2803 3237 1.129058 AAGACCCGTGAAGTGAAGGT 58.871 50.000 0.00 0.00 0.00 3.50
2804 3238 2.005370 AGACCCGTGAAGTGAAGGTA 57.995 50.000 0.00 0.00 0.00 3.08
2809 3243 2.224209 CCCGTGAAGTGAAGGTACAGTT 60.224 50.000 0.00 0.00 36.33 3.16
2813 3247 3.493503 GTGAAGTGAAGGTACAGTTTCCG 59.506 47.826 0.00 0.00 34.18 4.30
2814 3248 2.833631 AGTGAAGGTACAGTTTCCGG 57.166 50.000 0.00 0.00 0.00 5.14
2815 3249 1.154197 GTGAAGGTACAGTTTCCGGC 58.846 55.000 0.00 0.00 0.00 6.13
2816 3250 0.759959 TGAAGGTACAGTTTCCGGCA 59.240 50.000 0.00 0.00 0.00 5.69
2831 3265 1.571919 CGGCAAGGAAGAATAGGACG 58.428 55.000 0.00 0.00 0.00 4.79
2832 3266 1.134788 CGGCAAGGAAGAATAGGACGT 60.135 52.381 0.00 0.00 0.00 4.34
2833 3267 2.280628 GGCAAGGAAGAATAGGACGTG 58.719 52.381 0.00 0.00 0.00 4.49
2834 3268 2.093658 GGCAAGGAAGAATAGGACGTGA 60.094 50.000 0.00 0.00 0.00 4.35
2841 3275 4.201970 GGAAGAATAGGACGTGAGAGACAG 60.202 50.000 0.00 0.00 0.00 3.51
2846 3280 0.523966 GGACGTGAGAGACAGACCAG 59.476 60.000 0.00 0.00 0.00 4.00
2887 3321 2.919043 CCACCTCCCATGCCCTAC 59.081 66.667 0.00 0.00 0.00 3.18
2895 3329 0.689623 CCCATGCCCTACTCATCCTC 59.310 60.000 0.00 0.00 0.00 3.71
2911 3345 0.318441 CCTCAAAGGAGTCAGCGACA 59.682 55.000 10.52 0.00 37.67 4.35
2912 3346 1.671261 CCTCAAAGGAGTCAGCGACAG 60.671 57.143 10.52 0.00 37.67 3.51
2916 3350 1.536943 AAGGAGTCAGCGACAGGTCC 61.537 60.000 10.52 8.65 34.60 4.46
2927 3361 2.359570 GACAGGTCCGTCGTTGGTGT 62.360 60.000 0.00 0.00 0.00 4.16
2928 3362 1.663702 CAGGTCCGTCGTTGGTGTC 60.664 63.158 0.00 0.00 0.00 3.67
2929 3363 2.129146 AGGTCCGTCGTTGGTGTCA 61.129 57.895 0.00 0.00 0.00 3.58
2930 3364 1.005394 GGTCCGTCGTTGGTGTCAT 60.005 57.895 0.00 0.00 0.00 3.06
2938 3372 3.331150 GTCGTTGGTGTCATTGGATGTA 58.669 45.455 0.00 0.00 0.00 2.29
2946 3380 3.617263 GTGTCATTGGATGTAAGGTCGAC 59.383 47.826 7.13 7.13 0.00 4.20
2951 3385 2.371306 TGGATGTAAGGTCGACGATGA 58.629 47.619 9.92 0.00 0.00 2.92
2980 3414 2.181021 CCGTCACCGTCTACCTGC 59.819 66.667 0.00 0.00 0.00 4.85
2982 3416 2.632544 CGTCACCGTCTACCTGCCA 61.633 63.158 0.00 0.00 0.00 4.92
2986 3420 0.740868 CACCGTCTACCTGCCACATG 60.741 60.000 0.00 0.00 0.00 3.21
2987 3421 1.815421 CCGTCTACCTGCCACATGC 60.815 63.158 0.00 0.00 41.77 4.06
3029 3463 3.070060 CGTAGGACGCGCAACTTC 58.930 61.111 5.73 0.00 33.65 3.01
3034 3468 3.345808 GACGCGCAACTTCTGGCA 61.346 61.111 5.73 0.00 0.00 4.92
3049 3483 0.976641 TGGCATTCTCGTCCTTGACT 59.023 50.000 0.00 0.00 0.00 3.41
3051 3485 0.723981 GCATTCTCGTCCTTGACTGC 59.276 55.000 0.00 0.00 33.17 4.40
3055 3489 0.827925 TCTCGTCCTTGACTGCCTGT 60.828 55.000 0.00 0.00 0.00 4.00
3056 3490 0.888619 CTCGTCCTTGACTGCCTGTA 59.111 55.000 0.00 0.00 0.00 2.74
3060 3494 1.741770 CCTTGACTGCCTGTACCGC 60.742 63.158 0.00 0.00 0.00 5.68
3063 3497 2.125512 GACTGCCTGTACCGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
3071 3505 3.411351 GTACCGCCAGCGTGTGTG 61.411 66.667 11.55 0.00 37.81 3.82
3093 3527 1.077501 CCACATCCATGTCCGGCTT 60.078 57.895 0.00 0.00 39.39 4.35
3094 3528 0.680921 CCACATCCATGTCCGGCTTT 60.681 55.000 0.00 0.00 39.39 3.51
3097 3531 1.754234 ATCCATGTCCGGCTTTGCC 60.754 57.895 0.00 0.00 46.75 4.52
3128 3562 3.121030 GAGCGGCGTGTTGAGCAT 61.121 61.111 9.37 0.00 36.08 3.79
3134 3568 3.776849 CGTGTTGAGCATGCGCGA 61.777 61.111 12.10 12.39 45.49 5.87
3135 3569 2.202222 GTGTTGAGCATGCGCGAC 60.202 61.111 28.94 28.94 45.49 5.19
3144 3578 1.226575 CATGCGCGACCTCGTAGAA 60.227 57.895 12.10 0.00 42.22 2.10
3146 3580 2.914797 ATGCGCGACCTCGTAGAACG 62.915 60.000 12.10 0.00 44.19 3.95
3147 3581 2.477845 CGCGACCTCGTAGAACGT 59.522 61.111 0.00 0.00 43.14 3.99
3148 3582 1.579626 CGCGACCTCGTAGAACGTC 60.580 63.158 0.00 0.00 43.14 4.34
3153 3587 1.062206 CCTCGTAGAACGTCCGCTC 59.938 63.158 0.00 0.00 43.14 5.03
3154 3588 1.642037 CCTCGTAGAACGTCCGCTCA 61.642 60.000 0.00 0.00 43.14 4.26
3155 3589 0.167470 CTCGTAGAACGTCCGCTCAA 59.833 55.000 0.00 0.00 43.14 3.02
3156 3590 0.806868 TCGTAGAACGTCCGCTCAAT 59.193 50.000 0.00 0.00 43.14 2.57
3157 3591 1.200716 TCGTAGAACGTCCGCTCAATT 59.799 47.619 0.00 0.00 43.14 2.32
3158 3592 1.990563 CGTAGAACGTCCGCTCAATTT 59.009 47.619 0.00 0.00 36.74 1.82
3159 3593 2.222508 CGTAGAACGTCCGCTCAATTTG 60.223 50.000 0.00 0.00 36.74 2.32
3168 3613 1.154035 GCTCAATTTGGGTTCGCCG 60.154 57.895 0.00 0.00 38.45 6.46
3172 3617 2.043980 AATTTGGGTTCGCCGCGAT 61.044 52.632 17.62 0.00 38.45 4.58
3177 3622 3.640000 GGTTCGCCGCGATCATGG 61.640 66.667 17.62 0.00 35.23 3.66
3204 3649 2.821366 CCTCCTTGCTTGCGCGAT 60.821 61.111 12.10 0.00 39.65 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 53 0.892358 TATAGGTCCACGGCTAGGCG 60.892 60.000 34.16 34.16 0.00 5.52
42 54 1.335145 TTATAGGTCCACGGCTAGGC 58.665 55.000 6.15 6.15 0.00 3.93
43 55 2.233922 CCATTATAGGTCCACGGCTAGG 59.766 54.545 0.00 0.00 0.00 3.02
44 56 3.162666 TCCATTATAGGTCCACGGCTAG 58.837 50.000 0.00 0.00 0.00 3.42
45 57 3.162666 CTCCATTATAGGTCCACGGCTA 58.837 50.000 0.00 0.00 0.00 3.93
46 58 1.971357 CTCCATTATAGGTCCACGGCT 59.029 52.381 0.00 0.00 0.00 5.52
47 59 1.968493 TCTCCATTATAGGTCCACGGC 59.032 52.381 0.00 0.00 0.00 5.68
48 60 2.963101 TGTCTCCATTATAGGTCCACGG 59.037 50.000 0.00 0.00 0.00 4.94
49 61 4.142026 TGTTGTCTCCATTATAGGTCCACG 60.142 45.833 0.00 0.00 0.00 4.94
58 70 5.097742 TCGGTTGATGTTGTCTCCATTAT 57.902 39.130 0.00 0.00 0.00 1.28
141 154 6.735678 GGAGACCTTTCTTTTCATCTTCTC 57.264 41.667 0.00 0.00 29.47 2.87
242 273 4.559862 ACTAGTTGATCACTGGGAAAGG 57.440 45.455 0.00 0.00 38.32 3.11
272 303 7.382488 TCAGAATCTCGTCTTCTTTTAACTGTG 59.618 37.037 0.00 0.00 30.60 3.66
278 309 8.888579 AAAGTTCAGAATCTCGTCTTCTTTTA 57.111 30.769 0.00 0.00 30.60 1.52
297 328 3.725490 ACTCGAGTTGGTGGTAAAGTTC 58.275 45.455 13.58 0.00 0.00 3.01
358 397 2.605338 CCACACGCTGTTCCTTTGATTG 60.605 50.000 0.00 0.00 0.00 2.67
362 401 0.738389 AACCACACGCTGTTCCTTTG 59.262 50.000 0.00 0.00 0.00 2.77
363 402 1.404035 GAAACCACACGCTGTTCCTTT 59.596 47.619 0.00 0.00 0.00 3.11
373 412 2.680841 TCCTTGTCAAAGAAACCACACG 59.319 45.455 0.00 0.00 35.19 4.49
375 414 4.709397 ACAATCCTTGTCAAAGAAACCACA 59.291 37.500 0.00 0.00 40.56 4.17
376 415 5.043248 CACAATCCTTGTCAAAGAAACCAC 58.957 41.667 0.00 0.00 43.23 4.16
378 417 5.043248 CACACAATCCTTGTCAAAGAAACC 58.957 41.667 0.00 0.00 43.23 3.27
379 418 5.650543 ACACACAATCCTTGTCAAAGAAAC 58.349 37.500 0.00 0.00 43.23 2.78
381 420 4.946772 TGACACACAATCCTTGTCAAAGAA 59.053 37.500 1.23 0.00 45.10 2.52
382 421 4.522114 TGACACACAATCCTTGTCAAAGA 58.478 39.130 1.23 0.00 45.10 2.52
387 426 4.391216 CAGAGATGACACACAATCCTTGTC 59.609 45.833 0.00 0.00 43.23 3.18
388 427 4.040829 TCAGAGATGACACACAATCCTTGT 59.959 41.667 0.00 0.00 46.75 3.16
389 428 4.572909 TCAGAGATGACACACAATCCTTG 58.427 43.478 0.00 0.00 0.00 3.61
390 429 4.897509 TCAGAGATGACACACAATCCTT 57.102 40.909 0.00 0.00 0.00 3.36
392 431 4.763073 TCATCAGAGATGACACACAATCC 58.237 43.478 5.63 0.00 0.00 3.01
393 432 5.640783 TGTTCATCAGAGATGACACACAATC 59.359 40.000 9.07 0.00 0.00 2.67
412 476 2.035961 CTCACCGGTTCTCTTCTGTTCA 59.964 50.000 2.97 0.00 0.00 3.18
421 485 0.603569 TTCTCAGCTCACCGGTTCTC 59.396 55.000 2.97 0.00 0.00 2.87
425 489 1.194781 ACCATTCTCAGCTCACCGGT 61.195 55.000 0.00 0.00 0.00 5.28
426 490 0.824109 TACCATTCTCAGCTCACCGG 59.176 55.000 0.00 0.00 0.00 5.28
427 491 2.271800 GTTACCATTCTCAGCTCACCG 58.728 52.381 0.00 0.00 0.00 4.94
429 493 4.180057 CTCTGTTACCATTCTCAGCTCAC 58.820 47.826 0.00 0.00 0.00 3.51
430 494 3.368843 GCTCTGTTACCATTCTCAGCTCA 60.369 47.826 0.00 0.00 0.00 4.26
442 512 0.250295 TGCACCACTGCTCTGTTACC 60.250 55.000 0.00 0.00 44.57 2.85
460 530 1.006086 TGTTGTGTTGTGAGCGTCTG 58.994 50.000 0.00 0.00 0.00 3.51
572 887 4.651994 GCACAATTCTTATTCGTCTGGTG 58.348 43.478 0.00 0.00 0.00 4.17
628 947 6.301486 CCCATGATGAGATTTTGTGATAGGA 58.699 40.000 0.00 0.00 0.00 2.94
632 951 4.283337 TGCCCATGATGAGATTTTGTGAT 58.717 39.130 0.00 0.00 0.00 3.06
633 952 3.699413 TGCCCATGATGAGATTTTGTGA 58.301 40.909 0.00 0.00 0.00 3.58
635 954 3.449737 CCTTGCCCATGATGAGATTTTGT 59.550 43.478 0.00 0.00 0.00 2.83
681 1000 1.644786 GGAATTCTTCGTGTGGGGCG 61.645 60.000 5.23 0.00 0.00 6.13
682 1001 0.322546 AGGAATTCTTCGTGTGGGGC 60.323 55.000 5.23 0.00 0.00 5.80
683 1002 1.739067 GAGGAATTCTTCGTGTGGGG 58.261 55.000 5.23 0.00 0.00 4.96
684 1003 1.067142 TCGAGGAATTCTTCGTGTGGG 60.067 52.381 31.19 9.94 44.38 4.61
685 1004 2.263077 CTCGAGGAATTCTTCGTGTGG 58.737 52.381 31.19 19.11 44.38 4.17
686 1005 1.656095 GCTCGAGGAATTCTTCGTGTG 59.344 52.381 31.19 23.79 44.38 3.82
687 1006 1.546476 AGCTCGAGGAATTCTTCGTGT 59.454 47.619 31.19 19.43 44.38 4.49
688 1007 2.189342 GAGCTCGAGGAATTCTTCGTG 58.811 52.381 31.19 29.32 44.38 4.35
689 1008 1.135333 GGAGCTCGAGGAATTCTTCGT 59.865 52.381 31.19 17.82 44.38 3.85
690 1009 1.407258 AGGAGCTCGAGGAATTCTTCG 59.593 52.381 28.37 28.37 45.23 3.79
691 1010 3.535280 AAGGAGCTCGAGGAATTCTTC 57.465 47.619 15.58 7.49 0.00 2.87
704 1023 1.065564 GGTGAGAGATGCAAAGGAGCT 60.066 52.381 0.00 0.00 34.99 4.09
706 1025 2.419851 GGAGGTGAGAGATGCAAAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
708 1027 1.407989 GGGAGGTGAGAGATGCAAAGG 60.408 57.143 0.00 0.00 0.00 3.11
719 1038 0.336737 AGGGTGAGTAGGGAGGTGAG 59.663 60.000 0.00 0.00 0.00 3.51
724 1043 0.618968 AAGGCAGGGTGAGTAGGGAG 60.619 60.000 0.00 0.00 0.00 4.30
729 1048 1.203313 AGAGGAAAGGCAGGGTGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
738 1057 1.956477 GCAAAAGTGAGAGGAAAGGCA 59.044 47.619 0.00 0.00 0.00 4.75
739 1058 1.270826 GGCAAAAGTGAGAGGAAAGGC 59.729 52.381 0.00 0.00 0.00 4.35
740 1059 1.537202 CGGCAAAAGTGAGAGGAAAGG 59.463 52.381 0.00 0.00 0.00 3.11
741 1060 1.068954 GCGGCAAAAGTGAGAGGAAAG 60.069 52.381 0.00 0.00 0.00 2.62
742 1061 0.951558 GCGGCAAAAGTGAGAGGAAA 59.048 50.000 0.00 0.00 0.00 3.13
743 1062 0.889186 GGCGGCAAAAGTGAGAGGAA 60.889 55.000 3.07 0.00 0.00 3.36
744 1063 1.302511 GGCGGCAAAAGTGAGAGGA 60.303 57.895 3.07 0.00 0.00 3.71
745 1064 1.600636 TGGCGGCAAAAGTGAGAGG 60.601 57.895 10.22 0.00 0.00 3.69
746 1065 1.576421 GTGGCGGCAAAAGTGAGAG 59.424 57.895 15.50 0.00 0.00 3.20
747 1066 1.896660 GGTGGCGGCAAAAGTGAGA 60.897 57.895 15.50 0.00 0.00 3.27
748 1067 1.455383 AAGGTGGCGGCAAAAGTGAG 61.455 55.000 15.50 0.00 0.00 3.51
749 1068 1.040339 AAAGGTGGCGGCAAAAGTGA 61.040 50.000 15.50 0.00 0.00 3.41
750 1069 0.875474 CAAAGGTGGCGGCAAAAGTG 60.875 55.000 15.50 6.40 0.00 3.16
786 1105 1.608283 GGGTCAGGGAAACGAGACAAG 60.608 57.143 0.00 0.00 36.76 3.16
796 1115 1.304381 GCAATGCAGGGTCAGGGAA 60.304 57.895 0.00 0.00 0.00 3.97
802 1121 0.108945 GAGCTTTGCAATGCAGGGTC 60.109 55.000 31.53 19.77 40.61 4.46
831 1151 1.474320 CGATAAGCACCATCGGGGAAA 60.474 52.381 6.69 0.00 41.19 3.13
832 1152 0.105964 CGATAAGCACCATCGGGGAA 59.894 55.000 6.69 0.00 41.19 3.97
847 1224 1.374631 GCATCTGCATCCGCCGATA 60.375 57.895 0.00 0.00 39.77 2.92
865 1242 4.122776 AGTACAGTTCAGTCAGTGCAAAG 58.877 43.478 0.00 0.00 0.00 2.77
866 1243 4.137116 AGTACAGTTCAGTCAGTGCAAA 57.863 40.909 0.00 0.00 0.00 3.68
895 1272 2.820479 GCTCTGCTGCTGCCTCAG 60.820 66.667 13.47 10.73 38.71 3.35
952 1329 2.630098 CACCACTTGGAGACAGAGAGAA 59.370 50.000 1.14 0.00 44.54 2.87
958 1343 0.886490 GCCACACCACTTGGAGACAG 60.886 60.000 1.14 0.00 44.54 3.51
975 1360 2.028043 GCACAACCTTGCACAGCC 59.972 61.111 0.00 0.00 42.49 4.85
1006 1391 1.483415 GCAATGATGAACTGGCCCAAT 59.517 47.619 0.00 0.00 0.00 3.16
1105 1490 5.005299 TGACAGACGAACGCATGTATAAATG 59.995 40.000 0.00 0.00 0.00 2.32
1108 1493 4.099380 TGACAGACGAACGCATGTATAA 57.901 40.909 0.00 0.00 0.00 0.98
1113 1498 1.136529 CAACTGACAGACGAACGCATG 60.137 52.381 10.08 0.00 0.00 4.06
1137 1522 2.362077 GTGAGCTCCAACAACCAAACAT 59.638 45.455 12.15 0.00 0.00 2.71
1156 1559 5.379391 TCCAACTACTGGCACTCTTGGTG 62.379 52.174 7.84 0.00 45.98 4.17
1159 1562 2.693069 CTCCAACTACTGGCACTCTTG 58.307 52.381 0.00 0.00 45.98 3.02
1189 1594 1.342672 ACCCGACACTCTGGTGGTTT 61.343 55.000 1.29 0.00 46.85 3.27
1206 1611 2.159627 CCGTTTGTCTGTTGCTATGACC 59.840 50.000 0.00 0.00 0.00 4.02
1235 1640 6.616947 AGAGTTCAACTAGATTTCTCGACAG 58.383 40.000 0.00 0.00 0.00 3.51
1236 1641 6.206829 TGAGAGTTCAACTAGATTTCTCGACA 59.793 38.462 0.00 2.31 38.19 4.35
1237 1642 6.613233 TGAGAGTTCAACTAGATTTCTCGAC 58.387 40.000 0.00 0.08 38.19 4.20
1239 1644 6.847400 TCTGAGAGTTCAACTAGATTTCTCG 58.153 40.000 0.00 0.00 38.19 4.04
1242 1647 8.594881 TTGTTCTGAGAGTTCAACTAGATTTC 57.405 34.615 0.00 0.00 31.69 2.17
1247 1653 7.708752 AGAGTTTTGTTCTGAGAGTTCAACTAG 59.291 37.037 0.00 0.00 31.69 2.57
1248 1654 7.492669 CAGAGTTTTGTTCTGAGAGTTCAACTA 59.507 37.037 0.00 0.00 43.75 2.24
1252 1658 4.572389 GCAGAGTTTTGTTCTGAGAGTTCA 59.428 41.667 6.44 0.00 43.75 3.18
1253 1659 4.813697 AGCAGAGTTTTGTTCTGAGAGTTC 59.186 41.667 6.44 0.00 43.75 3.01
1259 1665 4.158394 AGCAAAAGCAGAGTTTTGTTCTGA 59.842 37.500 6.44 0.00 45.41 3.27
1262 1668 3.483558 CGAGCAAAAGCAGAGTTTTGTTC 59.516 43.478 12.67 12.67 46.21 3.18
1271 1677 3.073678 TCATTAAGCGAGCAAAAGCAGA 58.926 40.909 0.00 0.00 35.48 4.26
1272 1678 3.476295 TCATTAAGCGAGCAAAAGCAG 57.524 42.857 0.00 0.00 35.48 4.24
1283 1689 9.628983 CGATCATCATTATTACATCATTAAGCG 57.371 33.333 0.00 0.00 0.00 4.68
1301 1707 3.871006 CGAAATTCTTGGTCCGATCATCA 59.129 43.478 0.00 0.00 0.00 3.07
1305 1711 2.223044 GCACGAAATTCTTGGTCCGATC 60.223 50.000 1.71 0.00 0.00 3.69
1309 1715 0.168128 CCGCACGAAATTCTTGGTCC 59.832 55.000 1.71 0.00 0.00 4.46
1310 1716 0.454452 GCCGCACGAAATTCTTGGTC 60.454 55.000 1.71 0.00 0.00 4.02
1311 1717 0.889186 AGCCGCACGAAATTCTTGGT 60.889 50.000 1.71 0.00 0.00 3.67
1312 1718 0.454957 CAGCCGCACGAAATTCTTGG 60.455 55.000 1.71 0.00 0.00 3.61
1326 1732 2.301902 GAAATCAGCACGAGCAGCCG 62.302 60.000 7.77 2.15 45.49 5.52
1327 1733 1.300971 TGAAATCAGCACGAGCAGCC 61.301 55.000 7.77 0.00 45.49 4.85
1328 1734 0.096628 CTGAAATCAGCACGAGCAGC 59.903 55.000 7.77 0.00 45.49 5.25
1351 1757 1.408422 GCTGCACGAACCAATCAAAC 58.592 50.000 0.00 0.00 0.00 2.93
1352 1758 3.863681 GCTGCACGAACCAATCAAA 57.136 47.368 0.00 0.00 0.00 2.69
1371 1777 3.691744 CTGCTCGACGCCTCTCACC 62.692 68.421 4.73 0.00 38.05 4.02
1373 1779 2.359975 TCTGCTCGACGCCTCTCA 60.360 61.111 4.73 0.00 38.05 3.27
1380 1786 4.467062 TGCGCTCTCTGCTCGACG 62.467 66.667 9.73 0.00 40.11 5.12
1427 1833 4.767255 GCTCCAGCCTCACCGTGG 62.767 72.222 0.00 0.00 34.31 4.94
1452 1858 3.002583 TCCAGCTCCGGCATGTCA 61.003 61.111 0.00 0.00 41.70 3.58
1818 2224 2.238646 CCTAGTGGATGGGTACTTGCAA 59.761 50.000 0.00 0.00 34.57 4.08
1879 2293 6.911250 AGAAAACGGAAGAAATTATGGGTT 57.089 33.333 0.00 0.00 0.00 4.11
1904 2318 1.420641 TTCGTTGCATCGATCAGCCG 61.421 55.000 19.70 0.00 39.57 5.52
2115 2533 3.818787 CTTGCTGCCGGGCATCAC 61.819 66.667 23.99 16.03 42.09 3.06
2215 2636 1.794222 GCGAATTACAAGCCTGCGT 59.206 52.632 0.00 0.00 0.00 5.24
2254 2675 0.909610 ATCCTCTTCGGCCCACTTCA 60.910 55.000 0.00 0.00 0.00 3.02
2256 2677 0.253327 GAATCCTCTTCGGCCCACTT 59.747 55.000 0.00 0.00 0.00 3.16
2258 2679 0.462759 CTGAATCCTCTTCGGCCCAC 60.463 60.000 0.00 0.00 0.00 4.61
2261 2682 1.414181 TCATCTGAATCCTCTTCGGCC 59.586 52.381 0.00 0.00 0.00 6.13
2262 2683 2.869192 GTTCATCTGAATCCTCTTCGGC 59.131 50.000 0.00 0.00 36.33 5.54
2360 2789 1.338200 GCAACACTGACTGACTAGGGG 60.338 57.143 0.00 0.00 0.00 4.79
2361 2790 1.344438 TGCAACACTGACTGACTAGGG 59.656 52.381 0.00 0.00 0.00 3.53
2362 2791 2.820059 TGCAACACTGACTGACTAGG 57.180 50.000 0.00 0.00 0.00 3.02
2363 2792 4.512944 ACATTTGCAACACTGACTGACTAG 59.487 41.667 0.00 0.00 0.00 2.57
2385 2814 3.621268 TGACACTGACTGCAACTACAAAC 59.379 43.478 0.00 0.00 0.00 2.93
2393 2822 0.598419 CTCGCTGACACTGACTGCAA 60.598 55.000 10.09 0.00 33.57 4.08
2396 2825 1.858091 AAACTCGCTGACACTGACTG 58.142 50.000 0.00 0.00 0.00 3.51
2453 2885 3.623060 CAGACCACAACGGAGAAATATGG 59.377 47.826 0.00 0.00 38.63 2.74
2465 2897 2.930826 TTTCTCCTCCAGACCACAAC 57.069 50.000 0.00 0.00 0.00 3.32
2472 2904 9.621239 AGATGGTATTATATTTTCTCCTCCAGA 57.379 33.333 0.00 0.00 0.00 3.86
2484 2916 8.444783 TGCCCTTGTACAAGATGGTATTATATT 58.555 33.333 32.50 0.00 40.79 1.28
2486 2918 7.381789 TGCCCTTGTACAAGATGGTATTATA 57.618 36.000 32.50 10.15 40.79 0.98
2487 2919 6.260700 TGCCCTTGTACAAGATGGTATTAT 57.739 37.500 32.50 0.00 40.79 1.28
2488 2920 5.702065 TGCCCTTGTACAAGATGGTATTA 57.298 39.130 32.50 13.48 40.79 0.98
2489 2921 4.584638 TGCCCTTGTACAAGATGGTATT 57.415 40.909 32.50 0.00 40.79 1.89
2490 2922 4.413520 AGATGCCCTTGTACAAGATGGTAT 59.586 41.667 32.50 27.84 40.79 2.73
2491 2923 3.780294 AGATGCCCTTGTACAAGATGGTA 59.220 43.478 32.50 25.03 40.79 3.25
2492 2924 2.578021 AGATGCCCTTGTACAAGATGGT 59.422 45.455 32.50 17.44 40.79 3.55
2493 2925 3.287867 AGATGCCCTTGTACAAGATGG 57.712 47.619 32.50 26.03 40.79 3.51
2494 2926 4.264253 TGAAGATGCCCTTGTACAAGATG 58.736 43.478 32.50 23.63 40.79 2.90
2495 2927 4.574674 TGAAGATGCCCTTGTACAAGAT 57.425 40.909 32.50 19.99 40.79 2.40
2496 2928 4.264253 CATGAAGATGCCCTTGTACAAGA 58.736 43.478 32.50 16.30 40.79 3.02
2497 2929 4.627611 CATGAAGATGCCCTTGTACAAG 57.372 45.455 25.79 25.79 34.68 3.16
2515 2947 2.490509 TCTGCATTTTGAGGTCAGCATG 59.509 45.455 0.00 0.00 37.54 4.06
2516 2948 2.799017 TCTGCATTTTGAGGTCAGCAT 58.201 42.857 0.00 0.00 0.00 3.79
2517 2949 2.275134 TCTGCATTTTGAGGTCAGCA 57.725 45.000 0.00 0.00 0.00 4.41
2518 2950 3.311966 GTTTCTGCATTTTGAGGTCAGC 58.688 45.455 0.00 0.00 0.00 4.26
2519 2951 3.610114 CGGTTTCTGCATTTTGAGGTCAG 60.610 47.826 0.00 0.00 0.00 3.51
2520 2952 2.293122 CGGTTTCTGCATTTTGAGGTCA 59.707 45.455 0.00 0.00 0.00 4.02
2521 2953 2.351738 CCGGTTTCTGCATTTTGAGGTC 60.352 50.000 0.00 0.00 0.00 3.85
2522 2954 1.613437 CCGGTTTCTGCATTTTGAGGT 59.387 47.619 0.00 0.00 0.00 3.85
2523 2955 1.613437 ACCGGTTTCTGCATTTTGAGG 59.387 47.619 0.00 0.00 0.00 3.86
2524 2956 2.293122 TGACCGGTTTCTGCATTTTGAG 59.707 45.455 9.42 0.00 0.00 3.02
2525 2957 2.302260 TGACCGGTTTCTGCATTTTGA 58.698 42.857 9.42 0.00 0.00 2.69
2526 2958 2.791383 TGACCGGTTTCTGCATTTTG 57.209 45.000 9.42 0.00 0.00 2.44
2527 2959 2.231235 GGATGACCGGTTTCTGCATTTT 59.769 45.455 9.42 0.00 0.00 1.82
2528 2960 1.818674 GGATGACCGGTTTCTGCATTT 59.181 47.619 9.42 0.00 0.00 2.32
2529 2961 1.271871 TGGATGACCGGTTTCTGCATT 60.272 47.619 9.42 0.00 39.42 3.56
2530 2962 0.327924 TGGATGACCGGTTTCTGCAT 59.672 50.000 9.42 7.05 39.42 3.96
2531 2963 0.109532 TTGGATGACCGGTTTCTGCA 59.890 50.000 9.42 5.23 39.42 4.41
2532 2964 1.133025 CATTGGATGACCGGTTTCTGC 59.867 52.381 9.42 2.20 39.42 4.26
2533 2965 1.133025 GCATTGGATGACCGGTTTCTG 59.867 52.381 9.42 5.29 39.42 3.02
2534 2966 1.004745 AGCATTGGATGACCGGTTTCT 59.995 47.619 9.42 0.00 39.42 2.52
2535 2967 1.401905 GAGCATTGGATGACCGGTTTC 59.598 52.381 9.42 9.41 39.42 2.78
2536 2968 1.463674 GAGCATTGGATGACCGGTTT 58.536 50.000 9.42 0.00 39.42 3.27
2537 2969 0.394352 GGAGCATTGGATGACCGGTT 60.394 55.000 9.42 0.00 39.42 4.44
2538 2970 1.224592 GGAGCATTGGATGACCGGT 59.775 57.895 6.92 6.92 39.42 5.28
2539 2971 1.526917 GGGAGCATTGGATGACCGG 60.527 63.158 0.00 0.00 39.42 5.28
2540 2972 1.526917 GGGGAGCATTGGATGACCG 60.527 63.158 0.00 0.00 39.42 4.79
2541 2973 0.753111 GTGGGGAGCATTGGATGACC 60.753 60.000 0.00 0.00 0.00 4.02
2542 2974 0.034186 TGTGGGGAGCATTGGATGAC 60.034 55.000 0.00 0.00 0.00 3.06
2543 2975 0.928505 ATGTGGGGAGCATTGGATGA 59.071 50.000 0.00 0.00 0.00 2.92
2544 2976 2.233271 GTATGTGGGGAGCATTGGATG 58.767 52.381 0.00 0.00 0.00 3.51
2545 2977 1.852309 TGTATGTGGGGAGCATTGGAT 59.148 47.619 0.00 0.00 0.00 3.41
2546 2978 1.294041 TGTATGTGGGGAGCATTGGA 58.706 50.000 0.00 0.00 0.00 3.53
2547 2979 2.369983 ATGTATGTGGGGAGCATTGG 57.630 50.000 0.00 0.00 0.00 3.16
2548 2980 3.700539 TGAAATGTATGTGGGGAGCATTG 59.299 43.478 0.00 0.00 31.19 2.82
2549 2981 3.979911 TGAAATGTATGTGGGGAGCATT 58.020 40.909 0.00 0.00 0.00 3.56
2550 2982 3.668141 TGAAATGTATGTGGGGAGCAT 57.332 42.857 0.00 0.00 0.00 3.79
2551 2983 3.448093 TTGAAATGTATGTGGGGAGCA 57.552 42.857 0.00 0.00 0.00 4.26
2552 2984 6.461509 CCTTATTTGAAATGTATGTGGGGAGC 60.462 42.308 0.00 0.00 0.00 4.70
2553 2985 6.607198 ACCTTATTTGAAATGTATGTGGGGAG 59.393 38.462 0.00 0.00 0.00 4.30
2584 3016 7.660617 TGGGTGTGTATGAATTACGTCTTTTTA 59.339 33.333 0.00 0.00 33.15 1.52
2588 3020 5.155278 TGGGTGTGTATGAATTACGTCTT 57.845 39.130 0.00 0.00 33.15 3.01
2589 3021 4.811969 TGGGTGTGTATGAATTACGTCT 57.188 40.909 0.00 0.00 33.15 4.18
2592 3025 4.878971 TCCATTGGGTGTGTATGAATTACG 59.121 41.667 2.09 0.00 32.47 3.18
2602 3035 3.903090 ACATGAAAATCCATTGGGTGTGT 59.097 39.130 0.00 0.00 34.93 3.72
2605 3038 5.874261 GGTTTACATGAAAATCCATTGGGTG 59.126 40.000 0.00 0.00 34.93 4.61
2610 3043 8.835439 GTGTTTTGGTTTACATGAAAATCCATT 58.165 29.630 0.00 0.00 0.00 3.16
2612 3045 7.331026 TGTGTTTTGGTTTACATGAAAATCCA 58.669 30.769 0.00 5.55 0.00 3.41
2623 3056 8.825667 ATGGTAATGAATGTGTTTTGGTTTAC 57.174 30.769 0.00 0.00 0.00 2.01
2627 3060 6.155827 CGAATGGTAATGAATGTGTTTTGGT 58.844 36.000 0.00 0.00 0.00 3.67
2628 3061 5.576384 CCGAATGGTAATGAATGTGTTTTGG 59.424 40.000 0.00 0.00 0.00 3.28
2630 3063 6.015856 TGTCCGAATGGTAATGAATGTGTTTT 60.016 34.615 0.00 0.00 36.30 2.43
2631 3064 5.475220 TGTCCGAATGGTAATGAATGTGTTT 59.525 36.000 0.00 0.00 36.30 2.83
2633 3066 4.584874 TGTCCGAATGGTAATGAATGTGT 58.415 39.130 0.00 0.00 36.30 3.72
2651 3084 7.436376 GCTGCTCCTTTTCATAATAAAATGTCC 59.564 37.037 0.00 0.00 0.00 4.02
2660 3093 2.092429 TCCGGCTGCTCCTTTTCATAAT 60.092 45.455 0.00 0.00 0.00 1.28
2661 3094 1.280710 TCCGGCTGCTCCTTTTCATAA 59.719 47.619 0.00 0.00 0.00 1.90
2662 3095 0.908910 TCCGGCTGCTCCTTTTCATA 59.091 50.000 0.00 0.00 0.00 2.15
2663 3096 0.678048 GTCCGGCTGCTCCTTTTCAT 60.678 55.000 0.00 0.00 0.00 2.57
2665 3098 2.041115 GGTCCGGCTGCTCCTTTTC 61.041 63.158 0.00 0.00 0.00 2.29
2669 3103 1.612442 TTTAGGTCCGGCTGCTCCT 60.612 57.895 0.00 10.74 0.00 3.69
2670 3104 1.449778 GTTTAGGTCCGGCTGCTCC 60.450 63.158 0.00 0.00 0.00 4.70
2674 3108 1.070289 GGATAGGTTTAGGTCCGGCTG 59.930 57.143 0.00 0.00 0.00 4.85
2675 3109 1.062352 AGGATAGGTTTAGGTCCGGCT 60.062 52.381 0.00 0.00 35.89 5.52
2682 3116 2.030451 GCCGTCGTAGGATAGGTTTAGG 60.030 54.545 10.30 0.00 0.00 2.69
2702 3136 0.320697 AGAAAGTGGACTACGGGTGC 59.679 55.000 0.00 0.00 36.78 5.01
2703 3137 2.413837 CAAGAAAGTGGACTACGGGTG 58.586 52.381 0.00 0.00 0.00 4.61
2704 3138 1.346722 CCAAGAAAGTGGACTACGGGT 59.653 52.381 0.00 0.00 41.65 5.28
2705 3139 1.346722 ACCAAGAAAGTGGACTACGGG 59.653 52.381 0.00 0.00 41.65 5.28
2706 3140 2.833631 ACCAAGAAAGTGGACTACGG 57.166 50.000 0.00 0.00 41.65 4.02
2710 3144 4.202461 TGCAGAATACCAAGAAAGTGGACT 60.202 41.667 0.00 0.00 41.65 3.85
2719 3153 5.045942 TGGTTACTGATGCAGAATACCAAGA 60.046 40.000 13.38 0.00 37.07 3.02
2723 3157 3.555956 CGTGGTTACTGATGCAGAATACC 59.444 47.826 0.82 6.06 35.18 2.73
2735 3169 2.621338 AGATGCATGACGTGGTTACTG 58.379 47.619 2.46 0.00 0.00 2.74
2736 3170 4.672587 ATAGATGCATGACGTGGTTACT 57.327 40.909 2.46 0.00 0.00 2.24
2738 3172 4.765273 ACAATAGATGCATGACGTGGTTA 58.235 39.130 2.46 0.00 0.00 2.85
2739 3173 3.609853 ACAATAGATGCATGACGTGGTT 58.390 40.909 2.46 0.00 0.00 3.67
2748 3182 5.238868 GCACTCATGAAGACAATAGATGCAT 59.761 40.000 0.00 0.00 0.00 3.96
2750 3184 4.024218 GGCACTCATGAAGACAATAGATGC 60.024 45.833 0.00 0.00 0.00 3.91
2756 3190 1.278985 TCCGGCACTCATGAAGACAAT 59.721 47.619 0.00 0.00 0.00 2.71
2758 3192 0.904649 ATCCGGCACTCATGAAGACA 59.095 50.000 0.00 0.00 0.00 3.41
2763 3197 2.745308 CCCCATCCGGCACTCATGA 61.745 63.158 0.00 0.00 0.00 3.07
2770 3204 1.605453 GTCTTAACCCCATCCGGCA 59.395 57.895 0.00 0.00 0.00 5.69
2781 3215 3.064931 CCTTCACTTCACGGGTCTTAAC 58.935 50.000 0.00 0.00 0.00 2.01
2813 3247 2.093658 TCACGTCCTATTCTTCCTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
2814 3248 3.119101 TCTCACGTCCTATTCTTCCTTGC 60.119 47.826 0.00 0.00 0.00 4.01
2815 3249 4.399618 TCTCTCACGTCCTATTCTTCCTTG 59.600 45.833 0.00 0.00 0.00 3.61
2816 3250 4.399934 GTCTCTCACGTCCTATTCTTCCTT 59.600 45.833 0.00 0.00 0.00 3.36
2824 3258 2.026169 TGGTCTGTCTCTCACGTCCTAT 60.026 50.000 0.00 0.00 0.00 2.57
2826 3260 0.110678 TGGTCTGTCTCTCACGTCCT 59.889 55.000 0.00 0.00 0.00 3.85
2831 3265 1.188219 TGGGCTGGTCTGTCTCTCAC 61.188 60.000 0.00 0.00 0.00 3.51
2832 3266 1.156095 TGGGCTGGTCTGTCTCTCA 59.844 57.895 0.00 0.00 0.00 3.27
2833 3267 0.902516 AGTGGGCTGGTCTGTCTCTC 60.903 60.000 0.00 0.00 0.00 3.20
2834 3268 0.472734 AAGTGGGCTGGTCTGTCTCT 60.473 55.000 0.00 0.00 0.00 3.10
2887 3321 2.738000 CGCTGACTCCTTTGAGGATGAG 60.738 54.545 0.00 0.00 44.81 2.90
2895 3329 0.034059 ACCTGTCGCTGACTCCTTTG 59.966 55.000 9.49 0.00 33.15 2.77
2911 3345 1.469335 ATGACACCAACGACGGACCT 61.469 55.000 0.00 0.00 0.00 3.85
2912 3346 0.601841 AATGACACCAACGACGGACC 60.602 55.000 0.00 0.00 0.00 4.46
2916 3350 1.128507 CATCCAATGACACCAACGACG 59.871 52.381 0.00 0.00 0.00 5.12
2920 3354 4.079253 ACCTTACATCCAATGACACCAAC 58.921 43.478 0.00 0.00 0.00 3.77
2921 3355 4.331968 GACCTTACATCCAATGACACCAA 58.668 43.478 0.00 0.00 0.00 3.67
2922 3356 3.618752 CGACCTTACATCCAATGACACCA 60.619 47.826 0.00 0.00 0.00 4.17
2923 3357 2.936498 CGACCTTACATCCAATGACACC 59.064 50.000 0.00 0.00 0.00 4.16
2927 3361 2.756207 TCGTCGACCTTACATCCAATGA 59.244 45.455 10.58 0.00 0.00 2.57
2928 3362 3.159353 TCGTCGACCTTACATCCAATG 57.841 47.619 10.58 0.00 0.00 2.82
2929 3363 3.383505 TCATCGTCGACCTTACATCCAAT 59.616 43.478 10.58 0.00 0.00 3.16
2930 3364 2.756207 TCATCGTCGACCTTACATCCAA 59.244 45.455 10.58 0.00 0.00 3.53
2946 3380 1.804326 GGACCGTCCACGTTCATCG 60.804 63.158 13.05 0.00 46.00 3.84
2970 3404 3.799753 GCATGTGGCAGGTAGACG 58.200 61.111 0.00 0.00 43.97 4.18
2980 3414 1.120795 ACTTTTGGGGGTGCATGTGG 61.121 55.000 0.00 0.00 0.00 4.17
2982 3416 0.758123 CAACTTTTGGGGGTGCATGT 59.242 50.000 0.00 0.00 0.00 3.21
2994 3428 0.655733 CGTGTCGCTGTCCAACTTTT 59.344 50.000 0.00 0.00 0.00 2.27
3004 3438 2.874780 GCGTCCTACGTGTCGCTG 60.875 66.667 16.51 0.00 44.73 5.18
3005 3439 4.456253 CGCGTCCTACGTGTCGCT 62.456 66.667 19.48 0.00 45.94 4.93
3011 3445 1.731969 GAAGTTGCGCGTCCTACGT 60.732 57.895 8.43 0.00 44.73 3.57
3020 3454 0.179179 GAGAATGCCAGAAGTTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
3021 3455 0.095935 CGAGAATGCCAGAAGTTGCG 59.904 55.000 0.00 0.00 0.00 4.85
3029 3463 1.066573 AGTCAAGGACGAGAATGCCAG 60.067 52.381 0.00 0.00 37.67 4.85
3034 3468 1.066573 CAGGCAGTCAAGGACGAGAAT 60.067 52.381 0.00 0.00 37.67 2.40
3051 3485 4.373116 ACACGCTGGCGGTACAGG 62.373 66.667 18.99 4.20 44.69 4.00
3071 3505 2.475466 CGGACATGGATGTGGCAGC 61.475 63.158 0.00 0.00 41.95 5.25
3075 3509 0.680921 AAAGCCGGACATGGATGTGG 60.681 55.000 5.05 0.00 41.95 4.17
3077 3511 1.315257 GCAAAGCCGGACATGGATGT 61.315 55.000 5.05 0.00 45.16 3.06
3079 3513 1.754234 GGCAAAGCCGGACATGGAT 60.754 57.895 5.05 0.00 39.62 3.41
3111 3545 3.121030 ATGCTCAACACGCCGCTC 61.121 61.111 0.00 0.00 0.00 5.03
3118 3552 2.202222 GTCGCGCATGCTCAACAC 60.202 61.111 17.13 0.80 39.65 3.32
3120 3554 3.088500 GAGGTCGCGCATGCTCAAC 62.089 63.158 17.13 2.52 39.65 3.18
3128 3562 2.177531 GTTCTACGAGGTCGCGCA 59.822 61.111 8.75 0.00 44.43 6.09
3133 3567 1.226239 GCGGACGTTCTACGAGGTC 60.226 63.158 6.19 0.00 46.05 3.85
3134 3568 1.642952 GAGCGGACGTTCTACGAGGT 61.643 60.000 6.19 2.90 46.05 3.85
3135 3569 1.062206 GAGCGGACGTTCTACGAGG 59.938 63.158 6.19 0.00 46.05 4.63
3139 3573 2.093783 CCAAATTGAGCGGACGTTCTAC 59.906 50.000 9.79 0.00 0.00 2.59
3140 3574 2.343101 CCAAATTGAGCGGACGTTCTA 58.657 47.619 9.79 2.86 0.00 2.10
3144 3578 0.536460 AACCCAAATTGAGCGGACGT 60.536 50.000 0.00 0.00 0.00 4.34
3146 3580 0.168128 CGAACCCAAATTGAGCGGAC 59.832 55.000 0.00 0.00 0.00 4.79
3147 3581 1.582610 GCGAACCCAAATTGAGCGGA 61.583 55.000 0.00 0.00 0.00 5.54
3148 3582 1.154035 GCGAACCCAAATTGAGCGG 60.154 57.895 0.00 0.00 0.00 5.52
3153 3587 2.265073 ATCGCGGCGAACCCAAATTG 62.265 55.000 29.93 0.00 39.99 2.32
3154 3588 1.988834 GATCGCGGCGAACCCAAATT 61.989 55.000 29.93 10.09 39.99 1.82
3155 3589 2.437716 ATCGCGGCGAACCCAAAT 60.438 55.556 29.93 7.98 39.99 2.32
3156 3590 3.122323 GATCGCGGCGAACCCAAA 61.122 61.111 29.93 4.41 39.99 3.28
3157 3591 3.673956 ATGATCGCGGCGAACCCAA 62.674 57.895 29.93 11.32 39.99 4.12
3158 3592 4.155733 ATGATCGCGGCGAACCCA 62.156 61.111 29.93 24.70 39.99 4.51
3159 3593 3.640000 CATGATCGCGGCGAACCC 61.640 66.667 29.93 20.20 39.99 4.11
3182 3627 3.741476 GCAAGCAAGGAGGCCGTG 61.741 66.667 0.00 0.00 36.14 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.