>input_sequence_57607
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------------------------ATGGGTATTGGGCCAGTTCATCATTGCTTGGCCTCTCTTCTTGTCCTGCTTCCTCT
CCTCTGCTGCCACGGTGAGCTTCTCAGCTCGACTACTCTCTCAAGTCTCCATTTATACATGCGTTCGTCTGTCAGTTGGT
TA------------------TGTTTGGTTGTTGGAGCTCACCA--AGAGTGCCAGTAGTTGGAGCTGACGAACAAACCAC
CAGAGTGTCGGGTCATAGCAACAGACAAACGGATGCTTTCTGTCGAG-AAATCTAGTTGAACTCTCAGAACAAAACTCTG
CTTTTGCTCGCTTAATGATGTAATAATGATGATCGGACCAAGAATTTCGTGCGGCTGCTCGTGCTGATTTCAGTTTGTTT
GATTGGTTCGTGCAGCGGTGAGAGGCGTCGAGCAGAGAGCGCACACCGGCGCCGCGTCGCGCCCCCAGGCCGCCACGGTG
AGGCTGGAGCGCGCGCGTGACATGCCGGAGCTGGACGTGACGACGCCGCTGGCGACGGTCCCGCTGGCGAACCCGACGCC
GATGCCGGAGGCGACCGCCGCGCCGACGCTGGCGCACCCAACGGCCGCGGCTGGCGCGGGGAGCTGGTGCGTGGCGAGCC
CGAGCGCGGGCGCGGCGGCGCTGCAGGTGGCGCTGGACTACGCGTGCGGGCAGGGCGCGGACTGCTCGCCAATCCAGCCC
GGCGGGAGCTGCGCCGACCCGGACACCGTCCGCGACCACGCCTCCTACGCCTTCAACTCCTACTACCAGAAGAACCCCGT
CCAGACCAGCTGCGACTTCGCCGGCGCCGCCATCCTCACCAGCACCGATCCCAGCACCACCTCTTGCAAGTACCCATCCA
CTAGGTTGGTAACCATCA--------ATTCCTAACTAAGCATGGTGCATGCAAACCCATAATTTCTTCCGTTTTCTTCGG
CTGATCGATGCAACGAACGGCG----TGCAGCACCGGTGCTTCCGTCCTGAACACGACGTCTCCGGTGACCCCGGTGAAC
CCGACGTACGGATCCCCTCCCGGCGGCTCCTACAACTCTCCTCCTGGTCCTGGCGGCTACTACAACTCCCCTCCTATCTA
CGGGTCCATGTCGCCTCCGGACTACGGCGGCAGCATCAGCGCCGCCACGGCGGTGATGCCCGGCAGCAAGAGCACGACGG
CCGCC---ACGTCGCTGACGTGCCTCCTCGTCGTCGCAACGGTGTCTCTCAACCTGTGCAAGTAA---------------
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>chr1A_1_TraesCS1A01G420600
AGTAGAAACCGGAATGGCACGCACGTTCTTCCAGTAG-----------CCGGCGCCTAGCCGTGGACCTATAATGGAGAC
AACATCAACCGAGCAAATCAGGGGGACAAAAAGCAAATCTCTGGG-TTTTCTCTATGATATGTGCAGCTGCCCGAGAAGA
TGAAAAGAAAGGTCTCCCAAAAGCAGATGCAAAGGTTGGGGATTA-------------GATGGACGAAGCATCACGTTGA
TCGAGCTTCCGTTTATACCA-----CCCTTCTCCTTTCCCAGTGATCAACTAGTTCAGTGGGCACAGTTAAAAGAAGACG
AGATTCTGAACTTTACCACCAACTCGAGTACCCGATGATGATCGGAC--------CAGTTAAAGAACAACTGCGTGCAAT
CAAAGGAACAGCGTGTGGTTTCTTTGACAAGGA-------------------------TTGTGTGTCATCTCTGATGAAC
AGAAGAGAACCGGT------GAGCTGAGAATGGTAACAGAGCAGTGGTGCAGACGCTCACAACACAACACGTACGTCGAT
CAATCATCGACGGTACATATTCTCCCGGCAGTGCGTC-------------------------------------------
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------------------------------------------TAACTGTAGGTAGCATCTTTGTCACAAAGAGAAAGGAA
ATACTTCACCAGACGAATAAGAATTGTGCGCCTAAC----TGCACGAGACGAAAAACAATCCATTTTCCTATCACAAAAT
CTCATCATGGGCAAGGCTAATTATAAGCCATCATGAAGGCGCCCCACACGAAGAATTCCTCGAGCTCCTTTGCATCTCTC
ACCTCCCTACTCACCCTGCCTTTCCTCTCACTTTTGCCGCCACCTTTGGCTTAATCTATTGCTCCTTGTCTCGTTTCCCT
GACC-CTGCATTGCAAAGCTCCAACGCTGGTTTC----------------------------------------------
-----------CCCGATGGTGCTTATCGGCGGATGCAGATGCTTTGCACTGACTGAACTGTACTTGAGCTACTGAGGCAG
CAGCAGAGCAGCTAAGCTAGCTCACTCCACACTTGATAAGCTGCTTTTT--------TCTCTCTGTCTCCAAGTGGTGTG
GCTGTGCAAGGTTGTGCCGGCGGCATGGGTATTGGGCCAGTTCATCATTGCTTGGCCTCTCTTCTTGTCCTGCTTCCTCT
CCTCTGCTGCCACGGTGAGCTTCTCAGCTCGACTACTCTCTCAAGTCTCCATTTATACATGCGTTCGTCTGTCAGTTGGT
TA------------------TGTTTGGTTGTTGGAGCTCACCA--AGAGTGCCAGTAGTTGGAGCTGACGAACAAACCAC
CAGAGTGTCGGGTCATAGCAACAGACAAACGGATGCTTTCTGTCGAG-AAATCTAGTTGAACTCTCAGAACAAAACTCTG
CTTTTGCTCGCTTAATGATGTAATAATGATGATCGGACCAAGAATTTCGTGCGGCTGCTCGTGCTGATTTCAGTTTGTTT
GATTGGTTCGTGCAGCGGTGAGAGGCGTCGAGCAGAGAGCGCACACCGGCGCCGCGTCGCGCCCCCAGGCCGCCACGGTG
AGGCTGGAGCGCGCGCGTGACATGCCGGAGCTGGACGTGACGACGCCGCTGGCGACGGTCCCGCTGGCGAACCCGACGCC
GATGCCGGAGGCGACCGCCGCGCCGACGCTGGCGCACCCAACGGCCGCGGCTGGCGCGGGGAGCTGGTGCGTGGCGAGCC
CGAGCGCGGGCGCGGCGGCGCTGCAGGTGGCGCTGGACTACGCGTGCGGGCAGGGCGCGGACTGCTCGCCAATCCAGCCC
GGCGGGAGCTGCGCCGACCCGGACACCGTCCGCGACCACGCCTCCTACGCCTTCAACTCCTACTACCAGAAGAACCCCGT
CCAGACCAGCTGCGACTTCGCCGGCGCCGCCATCCTCACCAGCACCGATCCCAGCACCACCTCTTGCAAGTACCCATCCA
CTAGGTTGGTAACCATCA--------ATTCCTAACTAAGCATGGTGCATGCAAACCCATAATTTCTTCCGTTTTCTTCGG
CTGATCGATGCAACGAACGGCG----TGCAGCACCGGTGCTTCCGTCCTGAACACGACGTCTCCGGTGACCCCGGTGAAC
CCGACGTACGGATCCCCTCCCGGCGGCTCCTACAACTCTCCTCCTGGTCCTGGCGGCTACTACAACTCCCCTCCTATCTA
CGGGTCCATGTCGCCTCCGGACTACGGCGGCAGCATCAGCGCCGCCACGGCGGTGATGCCCGGCAGCAAGAGCACGACGG
CCGCC---ACGTCGCTGACGTGCCTCCTCGTCGTCGCAACGGTGTCTCTCAACCTGTGCAAGTAAGAAGCGAAGTACGCA
GGCTTGTAATTCGCGCGCAAATGCACTTGGAGGCTGAAGTGGGCCGAAGAGGATTCAGATGAACAGGCACCAAATGCATC
TAGAAAACAGAGGAGGCGCCATGACAGAAGCAGAGTAGC-AATGGGCA-------CCGGGCAGGCTGGCCCCTAGTCAGT
CAGTGTTGCAAATGTTTGTAGTTGCAGTCAGTGTCAGCGAGTTTTGGCGTGTGCTTGAGGTGGGATGTTTGTAC---TTG
CATGCCATATTTCTCCGTTGTGGTCTGGAGGAGAAAATATAATACCATCTTGTACAAGGGCATCTTCATGCTGACCTCAA
AATGCAGAAACCGGTCATCCAATGCTCCCCACATACATTTCAAATAAGGTTTAAATAAAAA-GACGTAATTCATACACAC
CCAATGGATTTTCATGTAAACCAAAACACATTCATTACCATTCGGACATTTTATTATG-AAAAGGAGCAGCCGGACCTAA
ACCTATCCTACGACGGCACCCGTAGTCCACTTTCTTGGTATTCTGCATCAGTAACCACGTCATGCATCTATTGTCTTCAT
GAGTGCCGGATGGGGTTAAGACCCGTGAAGTGAAGGTACAGTTTCCGGCAAGGAAGAATAGGACGTGAGAGACAGACCAG
CCCACTTGGCACACAAGGCCCTGCCACCTCCCATGCCCTACTCATCCTCAAAGGAGTCAGCGACAGGTCCGTCGTTGGTG
TCATTGGATGTAAGGTCGACGATGAACGTGGACGGTCCGTCACCGTCTACCTGCCACATGCACCCCCAAAAGTTGGACAG
CGACACGTAGGACGCGCAACTTCTGGCATTCTCGTCCTTGACTGCCTGTACCGCCAGCGTGTGTGCTGCCACATCCATGT
CCGGCTTTGCCGCCTTTGCGCTGCGAGCGGCGTGTTGAGCATGCGCGACCTCGTAGAACGTCCGCTCAATTTG-------
----GGTTCGCCGCGATCATGGCGGCCACGGCCTCCTTGCTTGCGCGAT
>chr1D_1
AGTAGAAACCGGAATGGCACGCACGTTCTTCCAGTAG-----------CC-----------ATGGACCTCTAATGGAGAC
AACATCAACCGAGCAAATCAGGGGGACAAAAAGCAAATCTCTGGGGTTTTCTCTATGATATGTGCAGCTGCCCAAGAAGA
TGAAAAAG--GGTCTCCCAAAAGCAGATGCAAAGGTTGGGGATTA-------------GATGGACGAAGCATCACGTTGA
TCGAGCTTCCGTTTATACCATACCACCCTTCTTCTTTCCCAGTGATCAACTAGTTCAGTGGGTACAGTGAAAAGAAGACG
AGATTCCAAACTTTACCACCAACTCGAGTACTCGATGATGATCGGAC--------GGGTTAAAGAACAACTGCATGA---
---------------TTATACCAAGATGCAAAAATGGGTGTGTTCTTTTGGGAAGGATTTGTGTGTCATCTCTGACGAAC
AGAACAGAGGAGAACCGGTAGAGCTGAGAATAGTAACAGAGCAGTGGTGAAGACGCTCACAACACAACACGTATGCCCAT
CAATCATCGACGGTACATATTCTCCCGGCAGTGCGTCG------------------------------------------
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-------------------------------------------AACTGTATGTAGCATCTTTGTCACAAAGAGAAAGGAC
ATACTTTACCAGACGAATAAGAAGGGTGCGCCTAACCAACTGCACGAGACGAAAAACAATCCATTTCCCTGCCTCAAAAT
CTCATCATGGGCAAGCCTAATTATAAGCCATCATGAAGG-----------AAGAATTCCTCGGGTTTCTTTGCATCTTTC
ACGTCCCAACTCACCCCA-----------CCTTTTCCCACCACCTTTGGCTTAATCTATTGCTCAATGTCTCGTCTCCCT
AACC-CTGCATTGCAAAGCTCCATCGCTGGCCTCCCAGCTAAAGCTTTCTCCTATTCCCCGACCCCCCCTCACCCGCGGA
CAAAATAATAGCCCGATGGTGCTCATCGGCGGATGCACATGG-TTGCACTGACTGAACTGTACTTGAGCTAGTGAGGCAG
CAGCAGAGCAGGTAAGCTAGCTCAATCCACACTTGATAAGCGCCTTTTCTCTCTCTCTCTCTGTGTCTCCAAGTGGTGT-
--------AGGTTGTGCCGGCGGCATGGGTCTTGGGCCAGTTCATCATTGCTTGGCCTCTCTTCTTGCCCTGCTTCCTCT
CCTCTGCTGCCACGGTGAGTTTCTCAGCTCCAGCACTCTCCGAAACTC-----TATATATGCGTTCGTTTTTCAGTTGGT
TGGATGGTTTTGTTTCGTGCTGTTTGGTTGTTGGAGCTGCCGAAGAGAGTGCCAGTAGTTGGAGCTGACGAACGAACCAC
CAGAGTGTCGTGTCATAGCAACAGACAAACGGATGCTTTTCATGGACAAAATTCAGTCCAACTCCCA-AACAAAACCGTG
CTTTTGCTTGCTTAATGATGTAACAAAGATAGCG------AGATCGAA---------TTCGTGCTGAGTTCAGTTT----
----GGTTCGAGCTGTAGCGAGAGGGTTCGAGCATCGGGCGCAC---GGCGACGCGTCCCGGCCGCGGTCTGT---GGTG
AGGCTGGAGCGCGCGCGGGACATGCCGGAGCTGGACGTGACCACGCCGCTCGCGACCGTCCCGCTGGTGAACCCAACACC
GATGCCGGAGGCGACCGCCGCGCCGTCGCTGGCGCACCCGACGGCCGCGGCTGGCGCGGGGAGCTGGTGCGTGGCAAGCC
CGAGCGCGGGCGCGGCGGCGCTGCAGGTGGCGCTGGACTACGCGTGCGGGCAGGGCGCGGACTGCTCGCCGATCCAGCCC
GGCGGGAGCTGCGCCGACCCGGACACCGTCCGCGACCACGCCTCCTACGCCTTCAACTCCTACTACCAGAAGAACCCCGT
CCAGACCAGCTGCGACTTCGCCGGCGCCGCCATCCTCACCAGCACCGACCCTAGCACCACCTCCTGCAAGTACCCATCCA
CCAGGTTGGTAACCATCATTCCATCAATTCCTAACTAGGCATGGTGCATGCAGACCGAGAATTTCTTCCGTTTTCTTTGG
CTGATCGATGCAACGAACGGCG----AGCAGTACCGGTGCTTCCGTCCTGAACACGACGTCTCCGGTGACCCCGGTGAAC
CCGACGTACGGATCCCCTCCCGGCGGCTCCTACAACTCTCCTCCTGGTCCTGGCGGCTACTACAACTCCCCGCCTCTCTA
TGGGTCCATGTCGCCCCCGGACTACGGCGGCAGCATCAGCGCCGCCACGGCCATGATGCCAGGCAGCAAGAGCACGACGG
CCGCC---ACGTCGCTGACGTGCCTCCTCGTCGTCGCAACGGTGTCTCTCAACCTGTGCAAGTAAGAAGCGAAGTTCGCA
GGCTTGTAATTCGCGTGCAAATGCACTTGGAGGCCGGAATGAATTGAAGAGGACTCTGTTGAACAAGCACCAAATGCATC
TACAAAACAGAGGAGGCGCCATGGCAGAAGCAGAGTGGC-AATGGTCAT-------CGAGCAGATTGGTAG-TCGTCAGT
CAGTGTTGCAAATACTTGTAGCTGTAGTCAGTGTCAGCGAGTTTTGGCGTGTGCTTCAGGTGCGATGTTTGTACTACTTG
CATGGCATATTTCTCCATTCTGGAGGAGAAATATATA-------------------------------------------
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>chr1B_1
AGTAGAAACCGGAATGGCACGCACGTTCTTCCAGTAGGCGGCGCCTAGCC-----------GTGGACCTGTAATGGAGAC
AACATCGACCGAGCAAATCAGGGGGACAAAAAGCAAATCTCCGGGGTTTTTTCTATGATCCGTGCAGCTGCCCAAGAAGA
TGAAAAGAAAGGTCTCCCAAAAGCAGATGCAAAGGTTTGGGGATTAGATAGATGGATGGATGGACGAGGCATCACGTTGG
TCGAGCTTCCGTTTATACCACACCGCCGTTCTTCTTTCCCAGTGATCAACTAGTTCAGTGGGTACAGTAAAAAGAAGACG
AGATTCTCAACTTTTCCACCAACTCGAGTACCCGATGATGATCGGACATTCGGACCAGTTAAAGAACCACTGCGTGAAAT
GCAAGGAACAGAGGATTATACCAAGA------------------------------------------------------
--------------------------------------------------------TCAGAACACAACACGTATGTCGAT
CAATCATCGACGGTACATATTCTCCCGGCGGTGCGTCTTTTCTTTTTAAGGAGGAAGACCCCGGCATCTAAGCGATCCAT
GCATCCACTTTATTAATTATTCACAAAAAACATTATAAAGAAATATAGCAGTAAGTCTGAAGCCACCGGCTAGGCAACAT
CTATCGCTACTCCTATCCAGTTGATGAAGGGATACTGATAGTCCGGGCCTATTGTCAAACAGACCTCGCAGCCAAGCCTA
ACATCTAAGACTTGAGGCCCCAACCAAGCCAGGCAGTGCGTCTAACTGTGGGTATCCTCTTTGTCACAAAGGGAAAGGAA
ATACTTTAGCAGACGAATAAGAAGGGTGCGCCTAACCAACTGCACAAAGCGAAAAACAAACCATTTCCCTGCCTCAAAAT
CTCATCATGGGCAGGGCTAATTATAAGCCATCATGAAGG-----------AGGAATTCCTCGGGTTTCTTTGCATCTTTC
AC------------CCCA-----------ACTTTTGCCGCCACCTTTGGCTTAATCTATTGCTCGTTGTCTCGTCTCCCT
TACCTCTGCATTGCAAAGCTCCATCGCTGGCCTCCCAGCTAAAGTTTTCTCCTATTCCCCGACCCCTCCTCGCCCGTGGA
CAAAATAATAGCCCGATGG-------------ATGCAGATGG-TTGCACTCACTGAACTGTACTTGAGCTAGTGAGGCCG
CAGCAGAGCAGCTAAGCTAGCTCACTCCAAATTTGCCAAGTTTATTTTCC---------------TCTCCAAGTGGTGTA
GCTGTGCAAGCTCGTACCAT---CATGGGTCATGGGCCAGTTCATCATTGCTTGGCTTCTCTTCTTGTCCTGCTTCCTCT
CTACTACTGCCACGGTGAGCTTCCCAACTCGACTACTCTCTCAAGTCTCAATC----------TTCGTCTGTCAAGGT--
-------TTTTGCTCTGCTCTGTTTGGTTGTTAGAGCTGACGAAGAGAGTGCCAGTAGTTGGAGCTGACGAACGAACCAC
GAGAGCCTCGTGTCATAGCAACAGACAAACGGATGCTTTTCATGGACAAAATTCAGTCCAACTCCCA-AACAAAACCGTG
CTTTTGCTTGCTTATTAATGATGTAACAAAAATCAAGGCAAGATCGAA---------CTCGTGCTGATTTCAATTC----
----GGTTCGAGCTGCAGCGAGAGGGGTCGAGCAGAGAGCGCTC---GGCGACGCGTCGCGGCCGCGCTCTGT---GGTG
AGGCTGGAGCGCGCGCGCGACATGCCGGAGCTGGACGTGACCACGCCGCTCGCGACGGTCCCGCTGGCGAACCCGACGCC
GATGCCGGAGGCGACCGCCGCGCCGACGCTGGCGCACCCGACGGCCGCGGCCGGCGCGGGGAGCTGGTGCGTGGCGAGCC
CGAGCGCGGGCGCGGGGGCGCTGCAGGTGGCGCTCGACTACGCGTGCGGGCAGGGCGCGGACTGCTCGCCGATCCAGCCC
GGCGGGAGCTGCGCCGACCCGGACACCGTGCGCGACCACGCCTCCTACGCCTTCAACTCCTACTACCAGAAGAACCCCGT
GCAGACCAGCTGCGACTTCGCCGGCGCCGCCATCCTCACCAGCACCGACCCCAGCACCACCTCCTGCAAGTACCCATCCA
CCAGGTTGGTAACCATCA--------ATTCTCACACA-------------CAGACCGAGAACTTCTTCCATTTTCTTTGG
CTGATCGATGCAACGGCTGACATGCATGCAGCACCGGTGCTTCCGTCCTGAACACGACGTCTCCGGTGACCCCGGTGAAC
CCGACGTACGGATCCCCTCCCGGCGGCTCCTACAACTCTCCTCCCGGTCCAGGCGGCTACTACAACTCCCCTCCTATCTA
CGGGTCCATGTCGCCCCCGGACTACGGCGGCAGCATCAGCGCCGCCACGGCAATGATGCCCGGCAGCAAGTGCACGACGG
CCGTGACAACGTCGCTGACATGCCTCCTCGTCACG---ACGATGTCCCTCGGCCTGCACAAGTAAGAAGCGAAGTTCACA
TGGTTTTAATTCGCGCGCAAATGCACTTGGATGCCAGAATGAACTGAAGAGGATTCAGATGAACCGGCACCAATTGCATC
CAGAAAACAGAGGAGGCGCCATGACAGAAGCAGAGTAGC-AATGGGCAATGGCCGCCGGGCAGGCTGGTAG-TAGTCAGT
CAGTGTTGCAAATATTTGTAGCTGTAGTCAGTGTCTGCGAGTTTTGGCGTATGTTTG-----------------------
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>chr1A_1744
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--------------------------------------------------------------------GAAGAACCCCGT
CCAGACCAGCTGCGACTTCGCCGGCGCCGCCATCCTCACCAGCACCGATCCCAGCACCACCTCCTGCAAGTACCCATCCA
CCAGGTTGGTAACCATCA--------ATTCCTAACTAAGCCGCCG------------------TCTTCCCTTTTCTTTGT
CTGATCGGAGCGACGACTGGCATGCATGCAGCACCGGTGCATCCATCCTGAACACGACGAATCCGGTGACCCCGGTGGCC
CCGATGTTCGGATCCCCTCCCGGGGGCTCCTACAACTCCCCTCCTGGTCCTGGCGGCTACTACAACTCCCCTCCTCTCTA
CGGGTCCATGTCGCCTCCGGACTACGGCGGCAGCATCAGCTCCGCCACGGCGATGATGCCGGGCAGCAAGAGCACGACGG
CCGTCACAACGTCGCTGACGTGCCTCCTCGTCACG---ACGATGTCCCTCGGCCTGCACAAGTAAGAAGCGAAGTTCACA
TGCTTTTTACTCGCGCGCAAGTGCACTTGGAGGCCAGAATGAACCGAAGAGGATTCAGATGAACAGGCACCAATTACATC
CAGAAAACAGGGGAGGCGCCATGACAGAAGCAGAGTAGCAAATGGGCAATGGCCGCCGGGCAGGCTGGTAG-TAGTCAGT
CAGTGTTGCAAATATTTGTAGCTGTAGTCAGTGTCAGCGAGTTTTGGCGTATGTTTCAGATGGAATGTTTG---TACTTG
CATGACATATTTCTCCATTGTGG---------------------------------------------------------
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>chr4B_2555
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-------------------------TCCACATATACATTTCAAACAAGGTTTGAACAAACTGGATGTAATTCATGCAAAC
CCGACGGATTTTCATATAAGTCGGAGCACATTCATTACGATTCAGACATTTTTCATTAAAAAGAGAGTGGCCGGAACTAA
ACCTATCCTACAGCG-----CGTCGTCCACTTCCTTTGTATTCTGCATATGCGACCACGTCCTCCATCTGTCGTCTCCAT
GAGCGCAAGCGGGGTTTAAGACCCGTGAAGTGAAGGCGCAGTCTCCAATGAGGAAGAGTGGGACAAAGGAGACAAACCAA
CCCACTTGGGACACAAGGCCCTGCCACCTCCCATGCCCTAGTCATCCTTAAAGGAGTCTGTGACCTGTCTGTCACCTGTG
CTGGTGGATGTGAGGTCGATGATGGACGTGGACGGTCTGTCACTGTCCACCTGTCCCATTG-CCCCCGAAAGTTGGATGG
CGGCGCGTAGGACATGCAACTTTTGGCGTTCTCGTCCTTGACCGTCTGCGCCGTCAACGCGTGTACTGTCGCGTTCGCGT
CCGGCTGCGCTGCCTTTGTGTTGCAAGCGTCATATTGAGCACGCGCAGTCTCACAGAGCACTCGCTGCTCGACAACGAAG
TTCTGGTTCGCCACGACCATGACGGCTACGGCCTCCTCGCTTGCG----
>SNPs
--------------------------------------------------SSSSSSSSSSS--------S----------
-------------------------------------------------------------------------S------
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--------------------------------S-----------------------------S-----S-----------
-------S--------------------------------------------------------------------S---
SS---------S-SS-SS-SS-SSSSSSS-SS-------------------------------------------S----
----S---SSS-SS-----------------S-----------------S-----------------------S------
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------S----------------SS-----------------------------------------S---SS-S------
---------------------------------------SSSSSSSSSSS------------S-S-S----------S--
--S----S--------SSSSSSSSSSSSS-----------------------------------S---------S-----
S----------------------S------SS------------------------------------------------
-----------------------S-----------------SS----------------------------S--------
------------------------------------------S-----S-------------S----------------S
------------------------------S-------------------------------------------------
-------------------------------------------------S--S----S----------------------
-S------------------------------------S--S-------------------------------S------
----------S----------------------------SSS-S--S-----SS---SS-----S--S--------SS--
--------S-----------------S---S---SSSS-----SSSSSSSSSSSSSS-------------------SSSS
SSSS------S--S--S-S------S------------------SSS----S---------S--S-S-S-S-SSSS----
-----------------S-----------------------S--------S-----------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------------S---------
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---------------------------------------------------------------S----------------
-S--------------------------------------------------S---S-S------------------S--
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----------------------------------------------------S---------------------------
---------------------------------------------------------------------------S----
----------------------------------S-S-S--SS-------------------------------------
--------------------------------------------------------------------SSSS--------
-------------S-------S--S-------------------------------------------------------
----S-----------S------SSSS--SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---S--S------------S-------S--S---SS---S---------S--S--
--S-S----------S---SS-SS-S------------S----S--------SSSS-S----SS---SS------S----
-----------SS--SSSSS---S--------S---S-----------SS-SS--------S-S-----S-S----S---
---S--SS-SS---S---------------------SS----S---SSSS-------S-S----SSSS------S----S
---------S------------------------------S-------S---------S-S---SS---S---SSSS---
SSSS-------S-------S----S------------S-----S---S-----S-S---SSS-----S---------SS-
--S-S--------SS-------S----S--------------S-S---SS---S--S--S----S---S-S-S-S-SS--
------SS--S-------S-S---S----S-S-S-------S----SSS---SS---S-SSS----SSSSSSS-------
------------S---S----S----S----------S-------SSSS
>forward_1058
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------------------------------------------------------------------------------TC
ACCTCCCTACTCACCCTG--------------------------------------------------------------
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>reverse_2974
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-------------GTCATCCAATGCTCCCCACA-----------------------------------------------
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