Multiple sequence alignment - TraesCS1A01G402800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G402800 chr1A 100.000 3921 0 0 1 3921 566480568 566476648 0.000000e+00 7241.0
1 TraesCS1A01G402800 chr1A 89.474 133 14 0 3480 3612 566476895 566476763 6.740000e-38 169.0
2 TraesCS1A01G402800 chr1B 92.884 2881 125 35 750 3609 657172526 657169705 0.000000e+00 4111.0
3 TraesCS1A01G402800 chr1B 92.581 647 41 4 1 641 657173293 657172648 0.000000e+00 922.0
4 TraesCS1A01G402800 chr1B 90.116 344 18 4 3167 3509 657169583 657169255 2.160000e-117 433.0
5 TraesCS1A01G402800 chr1B 97.980 99 2 0 3596 3694 657169123 657169025 5.210000e-39 172.0
6 TraesCS1A01G402800 chr1B 90.476 126 12 0 3557 3682 657169710 657169585 2.420000e-37 167.0
7 TraesCS1A01G402800 chr1B 97.059 68 2 0 3508 3575 657169186 657169119 8.900000e-22 115.0
8 TraesCS1A01G402800 chr1B 89.189 74 8 0 3609 3682 517347821 517347748 4.170000e-15 93.5
9 TraesCS1A01G402800 chr1D 95.742 2560 76 17 672 3221 472522840 472520304 0.000000e+00 4093.0
10 TraesCS1A01G402800 chr1D 92.259 633 20 2 3290 3921 472520289 472519685 0.000000e+00 870.0
11 TraesCS1A01G402800 chr1D 88.662 441 19 9 1 412 472523603 472523165 3.500000e-140 508.0
12 TraesCS1A01G402800 chr1D 84.043 188 25 4 456 641 472523081 472522897 4.030000e-40 176.0
13 TraesCS1A01G402800 chr2B 82.867 572 67 12 3378 3921 175897526 175898094 5.890000e-133 484.0
14 TraesCS1A01G402800 chr2B 88.732 213 22 2 3681 3893 175897634 175897844 3.890000e-65 259.0
15 TraesCS1A01G402800 chr2B 90.576 191 16 2 3732 3921 175898087 175898276 6.500000e-63 252.0
16 TraesCS1A01G402800 chr2B 86.420 81 11 0 3609 3689 592584012 592583932 5.400000e-14 89.8
17 TraesCS1A01G402800 chr2A 82.509 566 62 16 3357 3893 127993287 127993844 2.760000e-126 462.0
18 TraesCS1A01G402800 chr2A 87.736 212 20 5 3684 3893 127993417 127993624 3.910000e-60 243.0
19 TraesCS1A01G402800 chr2A 90.541 74 7 0 3609 3682 649694709 649694636 8.970000e-17 99.0
20 TraesCS1A01G402800 chr2D 81.017 590 66 20 3367 3921 123098422 123099000 1.010000e-115 427.0
21 TraesCS1A01G402800 chr2D 90.196 204 18 2 3690 3893 123098547 123098748 8.350000e-67 265.0
22 TraesCS1A01G402800 chr2D 88.725 204 22 1 3690 3893 504194101 504193899 8.410000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G402800 chr1A 566476648 566480568 3920 True 3705.000000 7241 94.737000 1 3921 2 chr1A.!!$R1 3920
1 TraesCS1A01G402800 chr1B 657169025 657173293 4268 True 986.666667 4111 93.516000 1 3694 6 chr1B.!!$R2 3693
2 TraesCS1A01G402800 chr1D 472519685 472523603 3918 True 1411.750000 4093 90.176500 1 3921 4 chr1D.!!$R1 3920
3 TraesCS1A01G402800 chr2B 175897526 175898276 750 False 331.666667 484 87.391667 3378 3921 3 chr2B.!!$F1 543
4 TraesCS1A01G402800 chr2A 127993287 127993844 557 False 352.500000 462 85.122500 3357 3893 2 chr2A.!!$F1 536
5 TraesCS1A01G402800 chr2D 123098422 123099000 578 False 346.000000 427 85.606500 3367 3921 2 chr2D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 241 0.679960 AATAAGAACTGTGGGCGCCC 60.680 55.000 39.4 39.4 0.00 6.13 F
334 353 0.974383 GTTCGGTATGGGATCGGGAT 59.026 55.000 0.0 0.0 0.00 3.85 F
924 1039 1.144936 CGCTAGAGGCCCTTGGAAG 59.855 63.158 0.0 0.0 37.74 3.46 F
2312 2439 1.064758 ACTGGTGTTGACTGGAAGCAA 60.065 47.619 0.0 0.0 37.60 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2010 1.868997 CTGCACGACAATGTCCCAC 59.131 57.895 7.91 0.00 0.00 4.61 R
2312 2439 0.886490 CACGCTGGGACTCAAGCTTT 60.886 55.000 0.00 0.00 0.00 3.51 R
2609 2736 0.322816 TCTGTGGCTTTGCAGGATCC 60.323 55.000 2.48 2.48 33.81 3.36 R
3614 3821 1.027357 CAAGCTCAACACAACAGCCT 58.973 50.000 0.00 0.00 33.28 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 109 2.580601 CGACCCCGAACCAGGAGTT 61.581 63.158 0.00 0.00 43.07 3.01
145 164 1.330655 CCACCGAGTAGCTCCCATGT 61.331 60.000 0.00 0.00 0.00 3.21
176 195 1.003118 ACGGAACTCTGCCATTTGCTA 59.997 47.619 0.00 0.00 42.00 3.49
177 196 2.292267 CGGAACTCTGCCATTTGCTAT 58.708 47.619 0.00 0.00 42.00 2.97
209 228 5.007430 CCGTCTCGTTGCTCTAGTAATAAGA 59.993 44.000 0.00 0.00 0.00 2.10
211 230 6.411492 CGTCTCGTTGCTCTAGTAATAAGAAC 59.589 42.308 0.00 0.00 0.00 3.01
213 232 7.429920 GTCTCGTTGCTCTAGTAATAAGAACTG 59.570 40.741 0.00 0.00 0.00 3.16
217 236 6.222038 TGCTCTAGTAATAAGAACTGTGGG 57.778 41.667 0.00 0.00 0.00 4.61
220 239 2.629051 AGTAATAAGAACTGTGGGCGC 58.371 47.619 0.00 0.00 0.00 6.53
222 241 0.679960 AATAAGAACTGTGGGCGCCC 60.680 55.000 39.40 39.40 0.00 6.13
229 248 4.338710 TGTGGGCGCCCTGTAACC 62.339 66.667 43.34 24.00 36.94 2.85
334 353 0.974383 GTTCGGTATGGGATCGGGAT 59.026 55.000 0.00 0.00 0.00 3.85
403 433 6.485830 AGCATGAGCCTGAAACTTATACTA 57.514 37.500 0.00 0.00 43.56 1.82
463 533 2.871216 GAACTCCCCCGCTGTAAGGC 62.871 65.000 0.00 0.00 0.00 4.35
504 574 4.142403 TGGAATTTCATGAAGGAATCGTGC 60.142 41.667 8.41 0.00 43.53 5.34
508 579 5.389859 TTTCATGAAGGAATCGTGCAATT 57.610 34.783 8.41 0.00 43.53 2.32
598 671 5.947228 AACGTGTTCATGACATGATTTCT 57.053 34.783 18.62 0.01 46.20 2.52
604 677 7.269084 CGTGTTCATGACATGATTTCTAAACAC 59.731 37.037 24.51 24.51 46.20 3.32
608 681 6.429692 TCATGACATGATTTCTAAACACGGTT 59.570 34.615 14.24 0.00 33.59 4.44
618 691 6.456447 TTCTAAACACGGTTCGAACTTATG 57.544 37.500 26.32 21.98 0.00 1.90
626 701 5.120208 CACGGTTCGAACTTATGACAAGATT 59.880 40.000 26.32 0.00 0.00 2.40
631 706 7.544566 GGTTCGAACTTATGACAAGATTACTGA 59.455 37.037 26.32 0.00 0.00 3.41
645 756 7.384387 ACAAGATTACTGAAGAACGTTTACCTC 59.616 37.037 0.46 0.00 0.00 3.85
689 800 4.864704 TGGTTTGAAAAGAACATAGCCC 57.135 40.909 0.00 0.00 0.00 5.19
692 803 4.988540 GGTTTGAAAAGAACATAGCCCAAC 59.011 41.667 0.00 0.00 0.00 3.77
703 814 3.055094 ACATAGCCCAACGTTGAGAGATT 60.055 43.478 29.35 10.65 0.00 2.40
706 817 1.880027 GCCCAACGTTGAGAGATTTGT 59.120 47.619 29.35 0.00 0.00 2.83
709 820 4.537015 CCCAACGTTGAGAGATTTGTTTC 58.463 43.478 29.35 0.00 0.00 2.78
710 821 4.275936 CCCAACGTTGAGAGATTTGTTTCT 59.724 41.667 29.35 0.00 0.00 2.52
711 822 5.221048 CCCAACGTTGAGAGATTTGTTTCTT 60.221 40.000 29.35 0.00 0.00 2.52
785 900 7.874940 AGATCTGAGAGAAGAATATTGAGTCG 58.125 38.462 0.00 0.00 0.00 4.18
795 910 9.739276 AGAAGAATATTGAGTCGAGAGATATCT 57.261 33.333 4.47 4.47 45.19 1.98
847 962 3.436577 TTCCACTTATTTAACGGGCCA 57.563 42.857 4.39 0.00 0.00 5.36
864 979 1.517257 CAGGATCGGACGCTGACAC 60.517 63.158 0.00 0.00 0.00 3.67
874 989 2.011741 ACGCTGACACGTGAGTCCAA 62.012 55.000 25.01 0.00 46.28 3.53
920 1035 4.554036 GCCCGCTAGAGGCCCTTG 62.554 72.222 7.06 0.00 45.16 3.61
921 1036 3.866582 CCCGCTAGAGGCCCTTGG 61.867 72.222 7.06 0.00 37.74 3.61
923 1038 2.367202 CCGCTAGAGGCCCTTGGAA 61.367 63.158 0.00 0.00 37.74 3.53
924 1039 1.144936 CGCTAGAGGCCCTTGGAAG 59.855 63.158 0.00 0.00 37.74 3.46
993 1111 3.209812 TCCTCCTCCATCGCGTCG 61.210 66.667 5.77 0.00 0.00 5.12
1011 1129 1.386550 GCACCCAACCCTAACCCAT 59.613 57.895 0.00 0.00 0.00 4.00
1100 1224 2.350134 GTCGTCCCCTTCAACCCC 59.650 66.667 0.00 0.00 0.00 4.95
1698 1825 2.738139 TCGACTCGTACGACCGCA 60.738 61.111 22.84 13.32 34.85 5.69
1724 1851 3.047877 CGCGTCAACCCCAAGACC 61.048 66.667 0.00 0.00 0.00 3.85
1793 1920 1.396607 CCACCGACGACCCCATCATA 61.397 60.000 0.00 0.00 0.00 2.15
1883 2010 4.598894 CCCCGCAGCATCCTCTCG 62.599 72.222 0.00 0.00 0.00 4.04
2117 2244 1.992557 ACCTTTGATGAGCCTAACCCA 59.007 47.619 0.00 0.00 0.00 4.51
2236 2363 1.639298 GCTGCTGGTGTTGATCCGAC 61.639 60.000 0.00 0.00 0.00 4.79
2312 2439 1.064758 ACTGGTGTTGACTGGAAGCAA 60.065 47.619 0.00 0.00 37.60 3.91
2318 2445 2.760092 TGTTGACTGGAAGCAAAAGCTT 59.240 40.909 1.86 1.86 37.60 3.74
2424 2551 1.354506 GGCGCTGACATGATGAAGC 59.645 57.895 7.64 12.62 0.00 3.86
2609 2736 2.095059 GGGCAAGTATGTGCTTGTGAAG 60.095 50.000 11.53 0.00 45.47 3.02
2657 2784 5.139435 TCTATCAGGTTCCTAATGATGCG 57.861 43.478 0.00 0.00 35.39 4.73
2798 2925 1.279271 GCAACTACTCAGGGTGGTGAT 59.721 52.381 0.00 0.00 39.58 3.06
2819 2946 0.997932 GTGAGAAGAGTGCAGATGCG 59.002 55.000 0.00 0.00 45.83 4.73
2993 3121 8.547967 TCTTAAATTTCGTTCTTAGATGTGCT 57.452 30.769 0.00 0.00 0.00 4.40
2994 3122 9.647797 TCTTAAATTTCGTTCTTAGATGTGCTA 57.352 29.630 0.00 0.00 0.00 3.49
3027 3155 6.891908 AGCACCTACTGTTTTGGATTAATGAT 59.108 34.615 0.00 0.00 0.00 2.45
3028 3156 8.052748 AGCACCTACTGTTTTGGATTAATGATA 58.947 33.333 0.00 0.00 0.00 2.15
3029 3157 8.682710 GCACCTACTGTTTTGGATTAATGATAA 58.317 33.333 0.00 0.00 0.00 1.75
3095 3223 3.859386 GCTGTGTATGTTTTAGCCATTGC 59.141 43.478 0.00 0.00 37.95 3.56
3155 3283 2.665165 TCATGAAAACCTTGTGGCACT 58.335 42.857 19.83 0.00 36.63 4.40
3165 3293 5.556006 ACCTTGTGGCACTTAGTAACTTA 57.444 39.130 19.83 0.00 36.63 2.24
3223 3351 2.491693 GTGGCAATGGCTAAGCTTGTTA 59.508 45.455 9.86 0.00 40.87 2.41
3233 3361 5.212934 GGCTAAGCTTGTTACTGTTTGTTC 58.787 41.667 9.86 0.00 0.00 3.18
3248 3376 4.926238 TGTTTGTTCGTCTTTGTTGCAATT 59.074 33.333 0.59 0.00 0.00 2.32
3262 3390 6.788598 TGTTGCAATTGTATATGGGTTGAT 57.211 33.333 0.59 0.00 0.00 2.57
3272 3400 9.860650 ATTGTATATGGGTTGATAGTGCTTTTA 57.139 29.630 0.00 0.00 0.00 1.52
3283 3411 7.534085 TGATAGTGCTTTTAAACCTGTATCG 57.466 36.000 0.00 0.00 0.00 2.92
3285 3413 3.439129 AGTGCTTTTAAACCTGTATCGGC 59.561 43.478 0.00 0.00 0.00 5.54
3287 3415 4.076394 TGCTTTTAAACCTGTATCGGCTT 58.924 39.130 0.00 0.00 0.00 4.35
3297 3425 4.694037 ACCTGTATCGGCTTAAACACTTTC 59.306 41.667 0.00 0.00 0.00 2.62
3394 3530 6.391227 TTTCTTCAACAATCACTTTCCTCC 57.609 37.500 0.00 0.00 0.00 4.30
3412 3548 4.406972 TCCTCCCATCTAATCTGACACTTG 59.593 45.833 0.00 0.00 0.00 3.16
3569 3748 3.826754 GCCTTTGCCGGCTAAGCC 61.827 66.667 35.79 26.62 46.63 4.35
3596 3775 2.730928 CGGTTAAATGCCTTTTGCTGTG 59.269 45.455 0.00 0.00 42.00 3.66
3601 3780 6.426633 GGTTAAATGCCTTTTGCTGTGTATTT 59.573 34.615 0.00 0.00 42.00 1.40
3612 3819 5.512753 TGCTGTGTATTTCTTGCTGAAAA 57.487 34.783 8.93 0.00 46.32 2.29
3614 3821 7.213216 TGCTGTGTATTTCTTGCTGAAAATA 57.787 32.000 8.93 2.80 46.32 1.40
3783 4369 4.634443 AGTGTGTATCGGTTAAATGCCTTC 59.366 41.667 0.00 0.00 0.00 3.46
3796 4382 3.520290 ATGCCTTCTGATGTGCATTTG 57.480 42.857 11.16 0.00 41.40 2.32
3895 4671 6.529125 CCAACAATCATTTTCCTCTCATTTCG 59.471 38.462 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 109 3.003173 CCTTGGCCTCCTCGGTGA 61.003 66.667 3.32 0.00 34.25 4.02
109 128 0.984230 TGGATTCCTTGTTCTCGGCT 59.016 50.000 3.95 0.00 0.00 5.52
176 195 3.329542 AACGAGACGGCATGGGCAT 62.330 57.895 0.00 0.00 43.71 4.40
177 196 4.015406 AACGAGACGGCATGGGCA 62.015 61.111 0.00 0.00 43.71 5.36
209 228 2.824880 TTACAGGGCGCCCACAGTT 61.825 57.895 45.13 24.03 38.92 3.16
211 230 2.746277 GTTACAGGGCGCCCACAG 60.746 66.667 45.13 34.33 38.92 3.66
220 239 2.501223 TTCAGCGAGCGGTTACAGGG 62.501 60.000 0.00 0.00 0.00 4.45
222 241 1.359848 AATTCAGCGAGCGGTTACAG 58.640 50.000 0.00 0.00 0.00 2.74
229 248 2.096268 TCAGTTCAAAATTCAGCGAGCG 60.096 45.455 0.00 0.00 0.00 5.03
230 249 3.542712 TCAGTTCAAAATTCAGCGAGC 57.457 42.857 0.00 0.00 0.00 5.03
233 252 4.601019 ACACTTCAGTTCAAAATTCAGCG 58.399 39.130 0.00 0.00 0.00 5.18
334 353 2.100749 ACTCGGTGCGACATCATAATGA 59.899 45.455 0.00 0.00 36.67 2.57
403 433 4.056050 GGTTCGACATTCAACACAGTACT 58.944 43.478 0.00 0.00 0.00 2.73
463 533 5.682943 TTCCACAGAATTCAAACGGTAAG 57.317 39.130 8.44 0.00 0.00 2.34
504 574 3.864583 CACCAACACACCAAACAGAATTG 59.135 43.478 0.00 0.00 0.00 2.32
508 579 2.208132 ACACCAACACACCAAACAGA 57.792 45.000 0.00 0.00 0.00 3.41
598 671 5.288015 TGTCATAAGTTCGAACCGTGTTTA 58.712 37.500 24.22 15.57 0.00 2.01
604 677 5.779806 AATCTTGTCATAAGTTCGAACCG 57.220 39.130 24.22 10.96 0.00 4.44
608 681 8.520351 TCTTCAGTAATCTTGTCATAAGTTCGA 58.480 33.333 0.00 0.00 0.00 3.71
618 691 7.384387 AGGTAAACGTTCTTCAGTAATCTTGTC 59.616 37.037 0.00 0.00 0.00 3.18
626 701 7.384115 CAGATTTGAGGTAAACGTTCTTCAGTA 59.616 37.037 0.00 0.00 0.00 2.74
631 706 6.937436 AACAGATTTGAGGTAAACGTTCTT 57.063 33.333 0.00 0.00 0.00 2.52
658 769 8.438676 TGTTCTTTTCAAACCAAACAGAAAAA 57.561 26.923 0.00 0.00 38.88 1.94
669 780 4.864704 TGGGCTATGTTCTTTTCAAACC 57.135 40.909 0.00 0.00 0.00 3.27
670 781 4.679654 CGTTGGGCTATGTTCTTTTCAAAC 59.320 41.667 0.00 0.00 0.00 2.93
671 782 4.339814 ACGTTGGGCTATGTTCTTTTCAAA 59.660 37.500 0.00 0.00 0.00 2.69
689 800 7.740519 AAAAGAAACAAATCTCTCAACGTTG 57.259 32.000 22.35 22.35 0.00 4.10
758 873 8.765488 ACTCAATATTCTTCTCTCAGATCTCA 57.235 34.615 0.00 0.00 0.00 3.27
768 883 9.988350 GATATCTCTCGACTCAATATTCTTCTC 57.012 37.037 0.00 0.00 0.00 2.87
770 885 9.773328 CAGATATCTCTCGACTCAATATTCTTC 57.227 37.037 1.03 0.00 0.00 2.87
773 888 9.935682 GATCAGATATCTCTCGACTCAATATTC 57.064 37.037 1.03 0.00 0.00 1.75
819 934 9.059260 GCCCGTTAAATAAGTGGAATATTTCTA 57.941 33.333 0.00 0.00 35.28 2.10
835 950 0.179029 CCGATCCTGGCCCGTTAAAT 60.179 55.000 0.00 0.00 0.00 1.40
847 962 2.885861 GTGTCAGCGTCCGATCCT 59.114 61.111 0.00 0.00 0.00 3.24
859 974 0.673985 CTCCTTGGACTCACGTGTCA 59.326 55.000 16.51 7.43 38.61 3.58
864 979 0.946221 GTGTGCTCCTTGGACTCACG 60.946 60.000 10.59 0.00 37.91 4.35
866 981 1.367471 CGTGTGCTCCTTGGACTCA 59.633 57.895 0.00 0.00 37.91 3.41
908 1023 3.309296 TGATACTTCCAAGGGCCTCTAG 58.691 50.000 6.46 4.51 0.00 2.43
993 1111 0.683179 GATGGGTTAGGGTTGGGTGC 60.683 60.000 0.00 0.00 0.00 5.01
1160 1284 3.406595 GAAGGGGATGGAGGCCGTG 62.407 68.421 0.00 0.00 0.00 4.94
1883 2010 1.868997 CTGCACGACAATGTCCCAC 59.131 57.895 7.91 0.00 0.00 4.61
2312 2439 0.886490 CACGCTGGGACTCAAGCTTT 60.886 55.000 0.00 0.00 0.00 3.51
2318 2445 3.695606 GCTCCACGCTGGGACTCA 61.696 66.667 0.00 0.00 38.32 3.41
2424 2551 1.798223 CACACGTGACACATAACCCAG 59.202 52.381 25.01 0.00 0.00 4.45
2609 2736 0.322816 TCTGTGGCTTTGCAGGATCC 60.323 55.000 2.48 2.48 33.81 3.36
2657 2784 6.738649 GCTCTTCAACATAATCGTTCTCAAAC 59.261 38.462 0.00 0.00 0.00 2.93
2798 2925 1.338484 GCATCTGCACTCTTCTCACCA 60.338 52.381 0.00 0.00 41.59 4.17
2819 2946 0.394899 ATACCCTTCAAGCAGCAGCC 60.395 55.000 0.00 0.00 43.56 4.85
2993 3121 6.821665 CCAAAACAGTAGGTGCTAAGCTTATA 59.178 38.462 6.64 0.00 35.29 0.98
2994 3122 5.648092 CCAAAACAGTAGGTGCTAAGCTTAT 59.352 40.000 6.64 0.00 35.29 1.73
3028 3156 9.060347 CAATATTCAACTACCAGCATAGTCATT 57.940 33.333 0.00 0.00 34.18 2.57
3029 3157 8.432013 TCAATATTCAACTACCAGCATAGTCAT 58.568 33.333 0.00 0.00 34.18 3.06
3030 3158 7.791029 TCAATATTCAACTACCAGCATAGTCA 58.209 34.615 0.00 0.00 34.18 3.41
3031 3159 8.839310 ATCAATATTCAACTACCAGCATAGTC 57.161 34.615 0.00 0.00 34.18 2.59
3032 3160 9.277783 GAATCAATATTCAACTACCAGCATAGT 57.722 33.333 0.00 0.00 41.09 2.12
3119 3247 2.502130 TCATGATGCATTTGGTGGCAAT 59.498 40.909 0.00 0.00 44.20 3.56
3165 3293 4.202461 TGCAAGACAACTCAGGGTAATCTT 60.202 41.667 0.00 0.00 34.54 2.40
3223 3351 3.057876 TGCAACAAAGACGAACAAACAGT 60.058 39.130 0.00 0.00 0.00 3.55
3233 3361 5.743398 CCCATATACAATTGCAACAAAGACG 59.257 40.000 0.00 0.00 0.00 4.18
3248 3376 9.688091 TTTAAAAGCACTATCAACCCATATACA 57.312 29.630 0.00 0.00 0.00 2.29
3262 3390 4.632688 GCCGATACAGGTTTAAAAGCACTA 59.367 41.667 0.00 0.00 0.00 2.74
3272 3400 4.648651 AGTGTTTAAGCCGATACAGGTTT 58.351 39.130 0.00 0.00 38.31 3.27
3283 3411 6.371825 AGCAGTACATAGAAAGTGTTTAAGCC 59.628 38.462 0.00 0.00 0.00 4.35
3285 3413 8.534333 TCAGCAGTACATAGAAAGTGTTTAAG 57.466 34.615 0.00 0.00 0.00 1.85
3287 3415 9.803315 CTATCAGCAGTACATAGAAAGTGTTTA 57.197 33.333 0.00 0.00 0.00 2.01
3297 3425 7.386299 GGATGGAAAACTATCAGCAGTACATAG 59.614 40.741 0.00 0.00 0.00 2.23
3394 3530 5.791367 CACACAAGTGTCAGATTAGATGG 57.209 43.478 2.28 0.00 42.83 3.51
3412 3548 3.056304 ACAATGGCGCAAAAATACACAC 58.944 40.909 10.83 0.00 0.00 3.82
3568 3747 5.339990 CAAAAGGCATTTAACCGATACAGG 58.660 41.667 0.00 0.00 37.30 4.00
3569 3748 4.798387 GCAAAAGGCATTTAACCGATACAG 59.202 41.667 0.00 0.00 43.97 2.74
3596 3775 6.856895 ACAGCCTATTTTCAGCAAGAAATAC 58.143 36.000 5.36 0.00 45.15 1.89
3601 3780 4.022935 CACAACAGCCTATTTTCAGCAAGA 60.023 41.667 0.00 0.00 0.00 3.02
3612 3819 2.816087 CAAGCTCAACACAACAGCCTAT 59.184 45.455 0.00 0.00 33.28 2.57
3614 3821 1.027357 CAAGCTCAACACAACAGCCT 58.973 50.000 0.00 0.00 33.28 4.58
3751 4337 3.031736 ACCGATACACACTTATCCTGCT 58.968 45.455 0.00 0.00 0.00 4.24
3783 4369 6.361481 CACTTTCAGTAACAAATGCACATCAG 59.639 38.462 0.00 0.00 0.00 2.90
3796 4382 6.803154 ATAGCAGGAAACACTTTCAGTAAC 57.197 37.500 0.00 0.00 41.43 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.