>input_sequence_41042
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-----------------------------------------------------------------------------ACC
CTAACCCATCCC-ACCCTCGCG--CCGCCGCCACCGGATCCATCCGCA---CCGCCGCCGCCGCGACCATGGGCTTCGAC
GTGGGCGTCGTCCCCTTCAACCCCGACGGCTGGGGCCCTCCCGACGCGCCGGGCGCGGCGCCGCTGCTGGGTGGGGCCGT
CGCCACGGCCTCCATCCCCTTCGCGCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCCGACTGGACGCGCAACCCGG
GCCACCCGGGTGCGCACGGCCACCACG---CGGCCGCCGCCTCCCGCGACTCGGTCTTCGACTTCTCCTCGGCCGACGAC
TCGCTCGCCGCCGCCGCCGAGGACTCGTCCTTCAGCCTCGTGGACGCCAAGCCGCCGCCCAAGCACCCGCGCTTCGGCCC
CAAGTGGCGCTTCAACCAGCGCCCCCAGCTCCCCCAGCGCCGCGACGAGGAGGTCGAGGCCAAGCGCCGCGAGGCCGAGA
AGGAGCGCGCCCGCCGCGAGCGCCACTACCAGAACCACCGCTCCCACCACCACCAGGGCTTCCGCGGCAACCAGCAGAAC
ACCGCCAAGCCCTCGGTCGACATCCAGCCCGACTGGACCATCCTCGAGCAGATCCCCTTCGCCAACTTCACCAAGCTCTC
CTTCGCCGTCAACGACCAGCCCGAGGACCTCCTCGTCTGCGGCGCCGTCGACTCGTACGACCGCACCTACGACCGCGTCA
ACCCCAAGACCGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCAAGATCACCACCACCGACGACCCCATCATA
CGCCGCCTCGCCGAGGAGGACAAGGCCACCGTCTTCGCCACCGACGCCATCCTCGCCGCCCTCATGTGCACGCCCCGCAG
CATCCTCTCGTGGGACATTGTCGTGCAGCGCGTCGGCAACAAGCTCTTCTTCGACAAGCGCGAGGGCTCCCAGCTCGATC
TGCTCACTGTCAACGAGACTGCCCAGGAGCAGCTCCCTGAGAACAAGGATGACATCAATTCCGCGCCGGCTCTTGCTGTC
GAGGCCACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTGGTACGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAA
CCCATTTGCCTCTGAGAATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGACGATGATATTAGCA
TCATTGCTCGCTGTGAAGTGCATGCTGCTGGTGTTGATCCGACTGGTGCTCGCCAGTTCCTCACGCTTAATGCACTCAAT
GAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGCAAAAGCTTGAGTCCCAGCGTGGAGCTGTGCTTGCTACAGAGCT
CAAGAACAATGCCAACAAGCTCGCTCGCTGGACTGCCCAGGCTTTACTTTCTGGCGCTGACATGATGAAGCTGGGTTATG
TGTCACGTGTGCACCCCCGCGACCACTTCAACCACTCCATACTCACTGTGATGGGCTACAAGCCAAGGGATTTTGCTACC
CAGATCAACCTCAACACTGCAAACATGTGGGGAATTGTCAAGTCGATTGTGGACATATGCATGAAGTTTGAAGAGGGCAA
GTATGTGCTTGTGAAGGATCCTGCAAAGCCACAGATGAGGATCTATCAGGTTCCTAATGATGCGTTTGAGAACGATTATG
TTGAAGAGCCACTTCCAGAGGAGGAGCAGATTCGTCCGGCTACAGATGATGTCGATGCTACTGCACAGGAGATGGATGCT
GCTGCCGAGGCAGAGGCTAATAAAGCAACTACTCAGGGTGGTGATGGTGAGAAGAGTGCAGATGCGGCTGCTGCTTGAAG
GGTATAATGGGCCATCTT-GCTTTATCTAGATAATGTGTATTTTCTGTTTTATGATCTGTTTTTGTGGATTAAAGAGTTG
AACTGCCT------------------------------------------------------------------------
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--------------------------------------------------------
>chr1A_1_TraesCS1A01G402800
CTTGCCATCCTCACAAGCATCGCTTTGCCATCTTTGCCATTGCAGAGGGTGCCAACTCGCCTACGGAGGCTACGACCCCG
AA------------------CCAGGAGTTCACCGAGGAGGCCAAGGCAGCCGAGAACAAGGAATCCACCGAGTAGCTCCC
ATGTCCTTTTTTGAACGGAACTCTGCCATTTGCTATGCCCATGCCGTCTCGTTGCTCTAGTAATAAGAACTGTGGGCGCC
CTGTAACCGCTCGCTGAATTTTGAACTGAAGTGTCGCAGACATGCCGTTATCCACCGCGCTATGCCATTCCATGGCTGTT
GATGCCTGTAACAGTTCGGTATGGGATCGGGATCATTATGA---TGTCGCACCGAGTGTCGTCCGGG------TCGGACA
GAATAAAAGCAT--GAGCCTGAAACTTATACTAGTACTGTGTTGAATGTCGAACCGGCT---------------------
-----GCTGCCTGCTGTCTGAA--------------CTCCCCCGCTGTAAGGCTTACCGTTTGAATTCTGTGGAATTTCA
TGAAGGAATCGTGCAA-TTCTGTTTGGTGTGTTGGTGTATGGTGTCTTGGAACCC--TAGCGGTTTCGCTTGAAATCGCC
GAATTCCAAACGTGTTCATGACATGATTTCTAAACACGGTTCGAACTTATG--ACAAGATTACTGAAGAACGTTT-----
-------------------------------ACCTCAAATCTGTTTTTTTTTTCTGTTTGGTTTGAAAAGAACATAGCCC
AACGTTGAGAGATTTGTTTCTTTTTTTATTAATAA---AAAGCAGAGATCTGATAGATTA-TTAAAAAAAACTGAGATCT
GAGAGAAGAATATTGAGTCGAGAGATATCTGATCGATGATATTTTTTCATGTGTAGAAATATTCCACTTATTTAACGGGC
CAGGATCGGACGCTGACACGTGAGTCCAAGGAGCACACGCTGACCTGTGGGCCATAGGCCCGCTAGAGGCCCTTGGAAG-
--TATCAGAAAATAAATATTCGCTTACCCAAACCCTAAAGCCCCCTCGTCCCGTCCTCCTCCATCGCGTCGCACCCAACC
CTAACCCATCCC-ACCCTCGCG--CCGCCGCCACCGGATCCATCCGCA---CCGCCGCCGCCGCGACCATGGGCTTCGAC
GTGGGCGTCGTCCCCTTCAACCCCGACGGCTGGGGCCCTCCCGACGCGCCGGGCGCGGCGCCGCTGCTGGGTGGGGCCGT
CGCCACGGCCTCCATCCCCTTCGCGCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCCGACTGGACGCGCAACCCGG
GCCACCCGGGTGCGCACGGCCACCACG---CGGCCGCCGCCTCCCGCGACTCGGTCTTCGACTTCTCCTCGGCCGACGAC
TCGCTCGCCGCCGCCGCCGAGGACTCGTCCTTCAGCCTCGTGGACGCCAAGCCGCCGCCCAAGCACCCGCGCTTCGGCCC
CAAGTGGCGCTTCAACCAGCGCCCCCAGCTCCCCCAGCGCCGCGACGAGGAGGTCGAGGCCAAGCGCCGCGAGGCCGAGA
AGGAGCGCGCCCGCCGCGAGCGCCACTACCAGAACCACCGCTCCCACCACCACCAGGGCTTCCGCGGCAACCAGCAGAAC
ACCGCCAAGCCCTCGGTCGACATCCAGCCCGACTGGACCATCCTCGAGCAGATCCCCTTCGCCAACTTCACCAAGCTCTC
CTTCGCCGTCAACGACCAGCCCGAGGACCTCCTCGTCTGCGGCGCCGTCGACTCGTACGACCGCACCTACGACCGCGTCA
ACCCCAAGACCGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCAAGATCACCACCACCGACGACCCCATCATA
CGCCGCCTCGCCGAGGAGGACAAGGCCACCGTCTTCGCCACCGACGCCATCCTCGCCGCCCTCATGTGCACGCCCCGCAG
CATCCTCTCGTGGGACATTGTCGTGCAGCGCGTCGGCAACAAGCTCTTCTTCGACAAGCGCGAGGGCTCCCAGCTCGATC
TGCTCACTGTCAACGAGACTGCCCAGGAGCAGCTCCCTGAGAACAAGGATGACATCAATTCCGCGCCGGCTCTTGCTGTC
GAGGCCACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTGGTACGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAA
CCCATTTGCCTCTGAGAATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGACGATGATATTAGCA
TCATTGCTCGCTGTGAAGTGCATGCTGCTGGTGTTGATCCGACTGGTGCTCGCCAGTTCCTCACGCTTAATGCACTCAAT
GAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGCAAAAGCTTGAGTCCCAGCGTGGAGCTGTGCTTGCTACAGAGCT
CAAGAACAATGCCAACAAGCTCGCTCGCTGGACTGCCCAGGCTTTACTTTCTGGCGCTGACATGATGAAGCTGGGTTATG
TGTCACGTGTGCACCCCCGCGACCACTTCAACCACTCCATACTCACTGTGATGGGCTACAAGCCAAGGGATTTTGCTACC
CAGATCAACCTCAACACTGCAAACATGTGGGGAATTGTCAAGTCGATTGTGGACATATGCATGAAGTTTGAAGAGGGCAA
GTATGTGCTTGTGAAGGATCCTGCAAAGCCACAGATGAGGATCTATCAGGTTCCTAATGATGCGTTTGAGAACGATTATG
TTGAAGAGCCACTTCCAGAGGAGGAGCAGATTCGTCCGGCTACAGATGATGTCGATGCTACTGCACAGGAGATGGATGCT
GCTGCCGAGGCAGAGGCTAATAAAGCAACTACTCAGGGTGGTGATGGTGAGAAGAGTGCAGATGCGGCTGCTGCTTGAAG
GGTATAATGGGCCATCTT-GCTTTATCTAGATAATGTGTATTTTCTGTTTTATGATCTGTTTTTGTGGATTAAAGAGTTG
AACTGCCTTGTCTTGATACAGTGGTCTTATTTTGGTCCATGAGAAAACTTGTTACTCTTAAATTTCGTTCTTAGATGTGC
TATAAGCTTAGCACCTACTGTTTTGGATTAATGATAATGACTATGCTGGTAGTTGAATATTGATTCTATGTGGTTGATCT
GCTGTGTATGTTTTAGCCATTGCGTATGCACATCTGTTTTTTAAGCATTGCCACCAAATGCATCATGAAAACCTTGTGGC
ACTTAGTAACTTAAGATTACCCTGAGTTGTCTTGCAATTTCCATGCTCTGTGGCAATGGCTAAGCTTGTTACTGTTTGTT
CGTCTTTGTTGCAATTGTATATGGGTTGATAGTGCTTTTAAACCTGTATCGGCTTAAACACTTTCTATGTACTGCTGATA
GTTTTCCATCCTATACCAATTGGGGGAAAGTGAAC--------AGCTTGTTTAAGCCTTTATATGCTTTCTTCAACAATC
ACTTTCCTCCCATCTAATCTGACACTTGTGTG-TATTTTTGCGCCATTGTTGTATGTTTCCATGACAGCATAAGAATACG
CTTGCCTTTT-CTGTTCTTCATATGGGATGAATGCTTCTGAATCTATCTGCATTGCATACGAATTTGTTTCACTTTTTTC
TCCCTTGTTGCCT-----------------------------------------TTGCCGGCTAAGCCTGTATCGGTTAA
ATGCCTTTTGCTGTGTATTTC----------------------------TTGCTGAAAATAGGCTGTTGTGTTGAGCTTG
ATAATCTCTTTTGCCAACAATCATTTTCCTCTCATTATCCTTC-------------------------------------
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--------------------------------ATATGGGATGAGTGCTTCTGAATCTA----------------------
------------------------------------------------TCTGCTTTGCATACGAAGTGGTTTCACTTTTT
TCTCCCTTGTTGCCTTAGCAGGATAAGTGTGTATCGGTTAAATGCCTTCTGATGTGCATTTGTTACTGAAAGTGTTTCCT
GCTATATTAATTTGAGGAAAGTGGGCAGTTGTGTTGAG------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTTGATAATCTCTTTCGCCA
ACAATCATTTTCCTCTCATTTC--------GAATGCATCTCATTGTTATTTTTATG
>chr1B_1
CTTGCCATCATCACAAGCATCGCTTTGCCATCTTTGCCATTGCAGAGGGCGCCAACTCGCCTACGGAGGTGACGACCCCG
AC------------------CCAGGAGTCCACCGAGGAGGCCAAGGCGGCCGAGAACAAGGAAGCCACCGAGTAGCTCCC
ATGGCCTTTTTTGAACGGAACTCTGCCATTTGCTGCGCCCATGCCGTCTCGTTGCAGTAGTAATAAGTATTCTGGACGTC
GTGTAACGCCT-GCTGAATTTTGAACTGAAGTGTCGCAGACATGCCGTTATCCACCGCGCTATGCCATTCCATGGCTGTT
GATGCCTGTAACAGTTCGGTATGGGATCGAGAACATTATGATGATGTCGCACCGAGTGTCGTCCGGG------TCGGACA
GAATAAAAGCAT--GAGCCTGAAACTTATACTGGTACTGTGTTGAACGTCGAACCGGCT---------------------
-----GCTGCCTGCTGTCTGAA--------------CTCCCCCGCTGTAAGGTTTACCGTTTGAATTCCGTGGAATTTCA
TGAAGGGATCGTGTAATTCATGTTTGGTCTGTTGGTGTATGGTGTCTTGGAACCC--TAGTGCTTTTGCTTGAAATCGCT
GAATTCCAAACGTGTTCATGACATGATTTCAAAACATGGTCCGAACTTATATAACAAGATAACTGGAGGACGTTTTTTCT
GGACTTGTAGGAAATCCAAGCACTGCCAATCACCTAAAATCTGTTTTTGTTTTCTGTTT---TTGAAAAGAACGTAGCCA
AAAGTTGAGAGATCTGATTTCATTTCCATGTATACAAAA------------------------AAAAAAAACAGAGATCT
GATAAAAAAATT---AGTCAAGAGATATCCGATCGATGATATTTTTTCATGTGGAGAAATATTCCACTTGTTTAACGGGC
TGGAATCGGACGCCG-------------------ACACGATGACAAGTGGGCCATCGGCCCGGTAGAGGCCTCTCAAGTA
TATATCAGAAAATAAATATTCGCTTACCCAAACCCTAAAGCCCCCTCGTCCCGTCCTCCTCCTCCGCATCTCAACCCTAA
CCAAACCCACTCAACCCTCGCG--CCGCCGCCTCCGGATCCATCCGCATCGCCGCCGCCGCCGCGAGCATGGGCTTCGAC
GTGGGCGTGGTCCCCTTCAACCCGGACGGCTGGGGCCCTCCCGACTTGCCGGGCGCGGCGCCGCTGCTGGGCGGGGCCGT
CGCGACGGCCTCGATCCCCTTCGCGCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCCGACTGGACGCGCAACCCGG
GCCACCCGGGCGCGCACGGCCACCACGGCGCGGCCGCCGTCTCCCGCGACTCGGTCTTCGACTTCTCCTCGGCCGACGAC
TCGCTCGCCGCCGCCGCCGAGGACTCGTCCTTCAGCCTCGTCGACGCCAAGCCGCCGCCCAAGCACCCGCGCTTCGGGCC
CAAGTGGCGCTTCAACCAGCGGCCCCAGCTCCCCCAGCGCCGCGACGAGGAGGTCGAGGCCAAGCGCCGCGAGGCCGAGA
AGGAGCGCGCCCGCCGCGAGCGCCACTACCAGAACCACCGCTCCCACCACCACCAGGGCTTCCGCGGCAACCAGCAGAAC
ACCGCCAAGCCCTCCGTCGACATCCAGCCCGACTGGACCATCCTCGAGCAGATCCCCTTCGCCAACTTCACCAAGCTCTC
CTTCGCCGTCGCCGACCAGCCCGAGGACCTGCTCGTCTGCGGCGCCGTCGACTCGTACGACCGCGCCTACGACCGCGTCA
ACCCCAAGACGGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCAAGATCACCACCACCGACGACCCCATCATC
CGCCGCCTCGCCGAGGAGGACAAGGCCACCGTCTTCGCCACCGACGCCATCCTCGCCGCCCTCATGTGCACGCCCCGCAG
CATCCTCTCCTGGGACATTGTCGTGCAGCGCGTCGGCAACAAGCTCTTCTTCGACAAGCGCGAGGGCTCCCAGCTCGATC
TGCTCACTGTCAACGAGACTGCGCAGGAGCAGCTCCCTGAGAACAAGGATGACATCAATTCCGCGCCGGCCCTTGCTGTC
GAGGCCACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTGGTGCGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAA
CCCGTTTGCCTCTGAGAATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGATGATGATATTAGCA
TCATTGCCCGCTGTGAAGTGCATGCTGCTGGTGTTGATCCCAGTGGTGCTCGCCAGTTCCTCACGCTTAATGCACTCAAT
GAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGCAGAAGCTCGAGTCCCAGCGTGGTGCTGTGCTTGCTACAGAGCT
CAAGAACAATGCCAACAAGCTCGCTCGCTGGACTGCCCAGGCTTTACTTTCTGGTGCTGACATGATGAAGTTGGGTTATG
TGTCACGTGTGCACCCCCGCGACCACTTCAACCACTCCATACTCACTGTGATGGGCTACAAGCCAAGGGATTTTGCTACC
CAGATCAACCTCAACACTGCAAACATGTGGGGCATTGTCAAGTCGATTGTGGACATCTGCATGAAGTTTGAAGAGGGAAA
GTATGTGCTTGTGAAAGATCCTGCCAAGCCACAGATGAGGATTTATCAGGTTCCTAATGATGCATTTGAGAATGATTATG
TTGAAGAGCCACTTCCAGAGGAGGAGCAGATTCGTCCGGCTACAGATGATGTCGATGCTACTGCACAGGAGATGGATGCT
GCTGCCGAGGCAGAGGCTAATAAAGCAACTACTCAGGGTGGTGAGGGTGAGAAGAGTGCAGATGCTGCTGCTGCTTGAAG
GGTATAATGGGCCATCTTTGCTTTATCTAGATAATGTGTCTTTTCTGTTTTATGACCTGTTTTTGTGGATTAAAGAGTTG
AACTGCCTTGTCTTGATACAGTGGTCTTGTTTTGGTCCATGAGAAAACTTGGTACTCTTAAATTTCATGCTTAGATGTGC
--TAAGCTTAGCACCTACCGTTTTGGATTAATGA------CTATTCTGGTAGTTGAATATTGATTATATGTGATTGATCT
GCTGTATATGTTTTAGCCATTGTGTATGCATGTCTGTTTTTTAAGCCTTT-CACCAAATGCATCATGAAAACCTT-----
------------CAGATTACCCTGCGTTGTCTTGCAATTTCCATGCTCTGCGGCAATGGCTAAGCTTGTTGCTGTTTGTT
TGTCTTTGTTGCAATGGTATATGGGTTGAGAGTGCTTTTGAACCTGTATCTGTTAAAACGTTTTTTATGTATTGCTGACA
GTTTTCCATCCTATACCAATTTTCCTCTCATTTCAAATTTAATAGCTTGTTGAAGCCTTTATATGCTTTCTTCAACAATC
ACTTTC--CTCATCTAATCTGATACTTCTGTG-TATTTTTGCTCCATTGTTGTATGTTTCCATGACAGCATAAGAATATG
CTGGCCTTTT-CTGTTCTTCGTATGTGATGAATGCTTCTGAGTCTATCTGCATTGCATGCGAATTTGTTTCACCTTTTTC
-CCCTTGTTGCTGGCTAAGTGTGTATCGGTTAAGTACGTTTTGCTGTTTATTACTTGCTGGCTAAGTGTGTATCGGTTAA
GTACGTTTTGCTGTTTATTAC----------------------------TTGCTGAAAGTGGGCTGTTGTGTTGAGCTTG
ATAGTCTCTTTTGCCAACAATCATTTTCCTCTCATTATCCTTCGTATGCAGATTACCCTGAGTTGTCTTGCAATTTCCAT
GCTCTCCGGCGATGGCCTTGTTGCTGTTTGTTCGTCTTAGTTGCAATTGTATATGGGCTTTTAAACCTGCATCGGCTTAA
AACACTTTCTATGTACTGCTGGTAGTTTTCCATACTATACCAATAGGGGGAAAGTGAACAGCTTGTTTAGGCCTTTATAT
GCTTTCTTCAACAATCACTTTCCTCTCATCTAACCTGAAACTTCTGTGTATTTTTGTGCCATTGTTATGTTTCCATGACA
GCATAGGAATACGCTTGCCTTTTCTGTTCTTCATATGGGACGAGTGCTTCTGAATCTACTCCCTCCGTTCCAGTTTTAGT
TCAAATTTGAACTAAAACCATGACGAGTAAATCGGAACGGAGGGAGTATCTGCATTGCATATGAATTTGTTTCGCTTTTT
TCTCCCTTGTTGCCTTTGCCGGCTAAGCCTGTATTTC-------------------------------------------
-----------TTGCTGAAAGTAGGCTGTTGTGTTGAG------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTTGATAATCTCTTTTGCCA
ACAATCATTTTCCTCTCATTATCCTTCGTATGGGATGAGTGCTT------------
>chr1D_1
CTTGCCATCGTCACAAGCATCGCTTTGCCATCTTTGCCATTGCAGAGGGTGCCAACTCGCCTACGGAGGCTACGACCCCG
AACCAGGAGTCCACCCTGAGCCAGGAGTCCACCGAGGAGGCCAAGGCCGCCGAGAACAAGGAATCCACCGAGTAGCTCCC
ATG-CCTTTTTTGAACGGAACTCTGCCATTTGCTGCGCCCATGCCGTCTCGTTGCTCTAGTAATAAGTATTCCGGACGTC
GTGTAACGCCT-GCTGAATTTTGAACTGAAGTGTCGCAGACATGCTGTTATCCACCGCGCTATGCCATTCCATGGCTGTT
GATGCCTGTAACAGTTCGGTATGGGATCGGGAACATTATGATGATGTCGCACCGAGTGTCGTCCGAGTCGGACTCGGACA
GAATAAAAGCGTGAGAGCCTGAAATTTATGCTGGTACTGTGCTAGTTTCTCCGTCCTGCAGTGCTGACGGTACCGTGCTG
AACCGGCTGCCTGCTGTCTGAAACCTGGGATGTTTCCTCACGCACTGTAAGGTTTTCTGTTTGAACAGTGCGG--TTTTG
TGAAGGAGTCCTGTAA-TCCTGTTTGGTGTGTTGGTCTATGGTGTCTTGGTACCACATAACGGTTTCGCTCGAAATTTCC
GAATTCCAAACGTGTTCATGACATGATTTCAAAACATGGTCCGAACT---ATAACAAGATAACTGGAGAACGTTTCTTCC
GGACTTATAGTAAATCCAAGCACTGCCAATCACCTAAAATCTGTTTTTGTT-------T---TTGAAAAAAACATAGCCA
AAAGTTGAGAGATATGATTTCATTTTTATGTATATAAGAAAACAGAGATCTGATAGATTCTTTAGAAAAAACAGAGATCT
GATAAAAAA-TATTGAGTCAAGAGATATCAGATTCT-----TTTTTTCATGTGGAGAAATATTCCACTTGTTTAACGGGC
CGGGATCGGACGCCGACATGCGAGTCCACGGAGTACACGCTGATATGTGGGCCATAGGCCCGGTAGAGGCCAC-------
----TCAGAAAATAAATATTCGCTTACCCAAACCCTAAAGCCTCGTCGTCCCGTCCTCCTCCATCGCGTCCCACCCAACC
CTAACCCACACC-GCCGCCGCCTCCCTCCGCCTCCGGATCCACCCGCACCGCCGCCGCCGCCGCGACCATGGGCTTCGAC
GTGGGCGTCGTCCCCTTCAACCCGGACGGCTGGGGCCCTCCCGACGCCCCGGGCGCGGCGCCGCTGCTGGGCGGGGCCGT
CGCGACGGCCTCCATCCCCTTCGCGCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCCGACTGGACGCGCAACCCGG
GCCACCCGGGCGCGCACGGCCACCACG---CGGCCGCCGCCTCCCGCGACTCGGTCTTCGACTTCTCCTCGGCCGACGAC
TCGCTCGCCGCCGCCGCCGAGGACTCGTCCTTCAGCCTCGTGGACGCCAAGCCGCCGCCCAAGCACCCGCGCTTCGGGCC
CAAGTGGCGCTTCAACCAGCGGCCCCAGCTCCCCCAGCGCCGCGACGAGGAGGTCGAGGCCAAGCGCCGCGAGGCCGAGA
AGGAGCGCGCCCGCCGCGAGCGCCACTACCAGAACCACCGCTCCCACCACCACCAGGGCTTCCGCGGCAACCAGCAGAAC
ACCGCCAAGCCCTCGGTCGACATCCAGCCCGACTGGACCATCCTCGAGCAGATCCCCTTCGCCAACTTCACCAAGCTCTC
CTTCGCCGTCAACGACCAGCCCGAGGACCTCCTCGTCTGCGGCGCCGTCGACTCGTACGACCGCGCCTACGACCGCGTCA
ACCCCAAGACGGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCAAGATCACCACCACCGACGACCCCATCATC
CGCCGCCTCGCCGAGGAGGACAAGGCCACCGTCTTCGCCACCGACGCCATCCTCGCCGCCCTCATGTGCACACCCCGCAG
CATCCTCTCCTGGGACATTGTCGTGCAGCGCGTCGGCAACAAGCTCTTCTTCGACAAGCGCGAGGGCTCCCAGCTCGATC
TGCTCACTGTCAACGAGACTGCGCAGGAGCAGCTCCCTGAGAACAAGGATGACATCAATTCCGCGCCGGCTCTTGCTGTC
GAGGCCACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTGGTACGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAA
CCCGTTTGCTTCTGAGAATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGACGATGATATTAGCA
TCATTGCTCGCTGTGAAGTGCATGCTGCCGGTGTTGATCCGAGTGGTGCTCGCCAGTTCCTCACTCTTAATGCACTCAAT
GAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGCAGAAGCTCGAGTCCCAGCGCGGAGCTGTGCTTGCTACAGAGCT
CAAGAACAATGCCAACAAGCTCGCTCGCTGGACTGCCCAGGCTTTACTTTCTGGCGCAGACATGATGAAGTTGGGTTATG
TGTCACGTGTGCACCCCCGCGACCACTTCAACCACTCCATACTCACTGTGATGGGCTACAAGCCAAGGGATTTTGCTACC
CAGATCAACCTCAACACTGCAAACATGTGGGGAATTGTCAAGTCGATTGTGGACATATGCATGAAGTTTGAAGAGGGCAA
GTATGTGCTTGTGAAAGATCCTGCAAAGCCACAGATGAGGATCTATCAGGTTCCTAATGATGCATTTGAGAACGATTATG
TTGAAGAGCCACTTCCAGAGGAGGAGCAGATTCGTCCGGCTACAGATGATGTTGATGCTACTGCACAGGAGATGGATGCT
GCTGCCGAGGCAGAGGCTAATAAAGCAACTACTCAGGGTGGTGACGGTGAGAAGAGTGCAGACGCTGCTGCTGCTTGAAG
GGTATAATGGGCCATC-TTGCTTTATCTAGATAATGTTTCTTTTCTGTTTTATGATCTGTTTTTGTGGATTAAAGAGTTG
AACTGCCTTGTCTTGATACAGTGGTCTTATTTTGGTCCATGAGAAAACTTGTTACTCTTAAATTTCGTTCTTAGATGTGC
--TAAGCTTAGCACCTACTGTTTTGGATTAATGA------CTATGCTGGTAGTTGAATATTGGTTCTATGTGGTTGATCT
GCTGTGTATGTTTTAGCCATTGTGTATGCACATCTGTTTTTTATGCCTTGCCACCAAATGCATCATGAAAACCTTGTGGC
ACATAGTAACTTCAGATTACCCCGAGTTGTCTTGCAATTTCCATGCTCTGTGGCAATGGCTAAGCTTGCTGCAATTTCCA
GG------------------------------------------------------AACACTTTTTATGTACTGCTGATA
GTTTTCCATCCTATACCAATGGGGGGAAAGTGAAC--------AGCTTGTTTAGGCCTTTATATGCTTTCTTCAACAATC
ACTTTCCTCTCATCTAATCTGACACTTCTGTG-TATTTTTGCGCCATTGTTGTATGTTTCCATGACAGCATAAGAATATG
CTTGCCTTTTTCTGTTCTTCATATGGGATGAATGCTTCTGAATCTATCTGCATTGCATACGAATTTGTTTCACTTTTTTC
TCCCTTGTTGCCT-----------------------------------------TTGTCGGCTAAGTGTGTATCAGTTAA
ATGCCTTTTGC--------------------------------------------------------TGTGTTGAGCTTG
ATAATCTCTTTTGCCAACAATCATTTTCCTCTCATTATCCTTC-------------------------------------
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--------------------------------ATATGGGATGAGTGCTTCTGAATCCA----------------------
------------------------------------------------TCTGCTTTGCATACAAAGTGGTTTCACTTTTT
TCTCGCTTGTTGCCTTTGCAGGATAAGTGTGTATCGGTTAAATGCCTTTTGATGTGCATTTCTTACTGAAAGTGTTTCCT
GCTATATTAATTTGAGGAAAATGGGCAGTTGGGTTGAG------------------------------------------
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------------------------------------------------------------CTTGATAATCTCTTTCGCCA
ACAATCATTTTCCTCTCATTTC--------AAATGCATCTCATTGTTGTTTTTATG
>chr2A_3357
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---------------------------------------------------TAAGATTTTATATGCTTTCTGCAACAATC
ACTTACCTCTCAACTAATCTGCCTTTTCTCTG-TTTTTTTGCG--ATTGTTTTCAGTTTCCATAACAGCATTACAATACA
CTTGCCTTCT-CTGTTCTTTGTCT-TGATGAATGCTTTTGAGTCTATTTGCTTAGCAAACGAATTTGTTACACTTTTC-C
TCCCTTTTAGCTT-----------------------------------------TTGCAGGATAAGTGTGTATCAGTTAA
ATGCTCTTTCTATGCATTTCTGGCTGAAAGTGTTTCCTGCTATATTAATTTGTGGAAAGTGGGCAGTTGGGTTGAGCTTG
ATAATCTCTTTCGCCAACAATCATTTTCCTCTCATTAGCCTTCCA-----------------------------------
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----------------------------------A---GATGACTGCATCTGAATCTA----------------------
------------------------------------------------TCTGCTTTGCATCGAAAGTTCTTTTGCTATTT
TCTCCCTTGTTGCCTTTGCAGGATAAGTGTGTATCGGTTAAATGCCTTTTGATGTGCATTTCTTACTGAAAGTGTTTCCT
GCTATATTAATTTGTGGAAAGTGGGCAGTTGGGTTGAG------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTTGATAATCTCTTTCGCCA
ACAATCATTTTCCTCTCATT------------------------------------
>chr2D_3367
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-------------------------------------------------------------TATACTTTCAGCAACAATC
ACTTCCTTCTCAACTAATCTGACTTCTCTGTGTTTTTTGTGTG--ATTCTTGTCTGTTTCCATAACAGCATAACAATACG
CCTGCCTTCT-CTGTT---TGTCTGTGAATAATGCTTCTGAATCTATTTGCTTAGCACACGAATTTGTTTCACTTTTC-C
TCCCTTTTAGGCT-----------------------------------------TTGCAGGATAAGTGTGTATCAGTTAA
ATGCTTTTGCTATGCATTTCTTGCTGAAAGTGTTTCCTGCTATATTAATTTGCGGAAAGTGGGCAGTTGGGTTGAGCTTG
ATAATCTCTTTCGCCAACAATCATTTTCCTCTCATTATCCTTCCA-----------------------------------
--------------------------------------------------------------------------------
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----------------------------------ATGGCTGCTTCGT------ATCTA----------------------
------------------------------------------------TCTGCTTTGCTTTAGAAGTTGTTTTGCCATTT
TCTCCCTTGTTGGCTTTGCAGGATAAGTGTGTATCGGTTAAATGCCGTTTGATGTGCATTTCTTACTGAAAGTGTTTCCT
GCTATATTAATTTGTGGAAAGTGGGCAGTTGGGTTGAG------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTTGATAATCTCTTTCGCCA
ACAATCATTTTCCTCTCATTATATACTTCAAA-TGTATCTCATCGTTATTTTTATG
>chr2B_3378
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------------------------------------------------------------------------CAACAATC
ACTTTCCTCTCAACTAATCTGACTTTTCTGTGTTTTTTGTGTG--ATTGTTGTCTGTTTCCATAACAGCATAACAATACG
CTTGCCTTCT-CTGTTCTTTGTCTGTGATGAATGCTTCTGAATCTATTTGCTTAGCACATGAACTTGTTTCACTTTTC-C
TCCCTTTTAGGCT-----------------------------------------TTGCAGGATAAGTGTGTATCAGTTAA
ATGCTTTTGCTATGCATTTCTTGCTGAAAGTGCTTCCTGCTATATTAATTTGTGGAAAGTGGGCAGTTGGGTTGAGCTTG
ATAATCTCTTTCGCCAACAATCATTTTCCTCTCATTATCCTTCCA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGAGATCACTGCTTCTGAATCTA----------------------
------------------------------------------------TCTGCTTTGCTTTAGAAGTTGTTTTGCCATTT
TCTCCCTTGTTGCCTTTGCAGGATAAGTGTGTATTGGTTAAATGCCTTTTGATGTGCATTTCTTACTGAAAGTGTTTCCT
GCTATATTAATTTGTGGAAAGTGGGCAGTTGGGTTGAGTTTCATAGTCTCTTTTGCCAACAATCATTTTCCTCTCATTGT
ATTGTATCTAATTGTTATTTTTATGCCCATGCTGCCTTTGCAGGATAAGTGTGTATCGGTCAAGTGCTTTTTGATGTGCA
TTTATTACTGAAAGTGTTTCCTGCTATATTAATTTTTGGAAAGTGGGCCGTTGGGTTGAGCTTCATTATCTCTTTCGCCA
ACAATCATTTTCCTCTCATTTC--------AA-TGCATCTCATTGTTATTTCTATG
>SNPs
---------S----------------------------------------------------------------------
----------------------------S------------------S--------------------------------
---S------------------------------SS-------------------------------S-S-S---S--S-
S------SS--S--------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------S-----------------------------------------------
----------------------------------------------------S---------------------------
-------------S----S-------------------------------------------------------------
------------------------------S-----S---S---------S---------S----S--------------
-----------------------------------S------------S----------SSS-----------------S
--S----------S--S--SSS-------SS---S------S-----------------S------------S-------
--S-S--S-----------S---------S-----------------------S---------------S----------
-S-----------S----S-S-------S----S----------S-----------------S--------SS-SS-SS-
----------------------------------------------------------------------S---------
--------S-----------------------S-----------------------------------------------
-----------------------S-----------------------------------------------S--------
---S----------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------S----------------------------------------------------------
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----------------------------------------------------------------S---------------
----------S--------------------------------------------------------------------S
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---------S----------------------------------------------------------------------
----------------------S---------------------------------------------------------
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---S----------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------S-----S-----------------------------------
----------------------------------------------------------------------S---------
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---------------S-----------------------------------------------S----------------
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--------------------------------------------S--------------------S--------------
---------------------------------------S----------------------------------------
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SS--------------------------------SSSSSS----------------------------------------
----------------------S-----------------------S---------------------------------
--S---------S---------------------------------------------------------S---------
S--------------S-------------S---------S----------S-S-S---------S---------------
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---------S-----------------S----------------------------------------------------
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------------------------------------------------------------------SS------------
--------------S----S--------------------------------------S-S-------------------
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----------------S-------------------------------S------------S------------------
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------------------------------S-------------------------
>forward_241
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-------------------------------------------------------------AATAAGAACTGTGGGCGCC
C-------------------------------------------------------------------------------
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>reverse_2010
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---------GTGGGACATTGTCGTGCAG----------------------------------------------------
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>forward_353
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-------------GTTCGGTATGGGATCGGGAT-----------------------------------------------
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>reverse_2439
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--------------------------------------AAAGCTTGAGTCCCAGCGTG----------------------
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>forward_1039
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------------------------------------------------------------CGCTAGAGGCCCTTGGAAG-
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>reverse_2736
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---------------GGATCCTGCAAAGCCACAGA---------------------------------------------
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>forward_2439
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------------------ACTGGTGTTGACTGGAAGCAA-----------------------------------------
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>reverse_3821
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------------------------------------------------------------AGGCTGTTGTGTTGAGCTTG
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--------------------------------------------------------
