Multiple sequence alignment - TraesCS1A01G394700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G394700 chr1A 100.000 2380 0 0 1 2380 560487799 560485420 0.000000e+00 4396
1 TraesCS1A01G394700 chr1A 78.508 791 91 36 1117 1870 560477543 560476795 1.680000e-121 446
2 TraesCS1A01G394700 chr1A 89.815 324 33 0 1038 1361 559881471 559881794 1.320000e-112 416
3 TraesCS1A01G394700 chr1A 80.055 361 53 13 1917 2259 560474877 560474518 1.410000e-62 250
4 TraesCS1A01G394700 chr1A 79.224 361 56 13 1917 2259 560476444 560476085 1.420000e-57 233
5 TraesCS1A01G394700 chr1A 78.729 362 57 14 1917 2259 560473312 560472952 8.560000e-55 224
6 TraesCS1A01G394700 chr1D 93.454 886 24 18 1499 2380 467506504 467507359 0.000000e+00 1284
7 TraesCS1A01G394700 chr1D 88.381 1007 42 17 545 1502 467501039 467502019 0.000000e+00 1142
8 TraesCS1A01G394700 chr1D 79.714 1257 164 61 601 1799 467510219 467511442 0.000000e+00 824
9 TraesCS1A01G394700 chr1D 78.174 701 113 18 1708 2377 467495667 467496358 6.120000e-111 411
10 TraesCS1A01G394700 chr1D 86.705 346 40 5 1041 1382 467494664 467495007 1.730000e-101 379
11 TraesCS1A01G394700 chr1B 82.057 836 59 30 528 1340 645340086 645340853 1.550000e-176 628
12 TraesCS1A01G394700 chr1B 79.172 725 104 27 695 1382 645319510 645320224 2.160000e-125 459
13 TraesCS1A01G394700 chr1B 79.487 156 30 2 236 390 442190004 442189850 2.500000e-20 110
14 TraesCS1A01G394700 chr5D 76.380 326 42 19 66 388 426641513 426641806 2.470000e-30 143
15 TraesCS1A01G394700 chr7A 83.621 116 15 3 277 390 42604468 42604581 3.240000e-19 106
16 TraesCS1A01G394700 chr3B 78.431 153 33 0 236 388 406799033 406798881 1.510000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G394700 chr1A 560485420 560487799 2379 True 4396.00 4396 100.0000 1 2380 1 chr1A.!!$R1 2379
1 TraesCS1A01G394700 chr1A 560472952 560477543 4591 True 288.25 446 79.1290 1117 2259 4 chr1A.!!$R2 1142
2 TraesCS1A01G394700 chr1D 467501039 467502019 980 False 1142.00 1142 88.3810 545 1502 1 chr1D.!!$F1 957
3 TraesCS1A01G394700 chr1D 467506504 467511442 4938 False 1054.00 1284 86.5840 601 2380 2 chr1D.!!$F3 1779
4 TraesCS1A01G394700 chr1D 467494664 467496358 1694 False 395.00 411 82.4395 1041 2377 2 chr1D.!!$F2 1336
5 TraesCS1A01G394700 chr1B 645340086 645340853 767 False 628.00 628 82.0570 528 1340 1 chr1B.!!$F2 812
6 TraesCS1A01G394700 chr1B 645319510 645320224 714 False 459.00 459 79.1720 695 1382 1 chr1B.!!$F1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.034767 TCTTCGGTTCGCTAGGAGGA 60.035 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 5913 0.039617 TTTGTACGCAAGCACATGGC 60.04 50.0 0.0 0.0 44.42 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.899239 CTGGCCCTCGATGCGGTC 62.899 72.222 0.00 0.00 0.00 4.79
19 20 4.162690 GGCCCTCGATGCGGTCTT 62.163 66.667 0.00 0.00 0.00 3.01
20 21 2.586357 GCCCTCGATGCGGTCTTC 60.586 66.667 0.00 0.00 0.00 2.87
21 22 2.278857 CCCTCGATGCGGTCTTCG 60.279 66.667 0.00 0.00 40.09 3.79
22 23 2.278857 CCTCGATGCGGTCTTCGG 60.279 66.667 0.00 0.00 39.46 4.30
23 24 2.490217 CTCGATGCGGTCTTCGGT 59.510 61.111 0.00 0.00 39.46 4.69
25 26 1.140407 CTCGATGCGGTCTTCGGTTC 61.140 60.000 0.00 0.00 39.46 3.62
30 31 1.872679 GCGGTCTTCGGTTCGCTAG 60.873 63.158 0.00 0.00 44.10 3.42
31 32 1.226603 CGGTCTTCGGTTCGCTAGG 60.227 63.158 0.00 0.00 34.75 3.02
32 33 1.651240 CGGTCTTCGGTTCGCTAGGA 61.651 60.000 0.00 0.00 34.75 2.94
34 35 0.100861 GTCTTCGGTTCGCTAGGAGG 59.899 60.000 0.00 0.00 0.00 4.30
35 36 0.034767 TCTTCGGTTCGCTAGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
36 37 0.382515 CTTCGGTTCGCTAGGAGGAG 59.617 60.000 0.00 0.00 0.00 3.69
37 38 1.664321 TTCGGTTCGCTAGGAGGAGC 61.664 60.000 0.00 0.00 39.20 4.70
38 39 2.415608 CGGTTCGCTAGGAGGAGCA 61.416 63.158 0.00 0.00 42.99 4.26
39 40 1.898154 GGTTCGCTAGGAGGAGCAA 59.102 57.895 0.00 0.00 42.99 3.91
40 41 0.179097 GGTTCGCTAGGAGGAGCAAG 60.179 60.000 0.00 0.00 42.99 4.01
41 42 0.533032 GTTCGCTAGGAGGAGCAAGT 59.467 55.000 0.00 0.00 42.99 3.16
42 43 1.066787 GTTCGCTAGGAGGAGCAAGTT 60.067 52.381 0.00 0.00 42.99 2.66
43 44 0.818296 TCGCTAGGAGGAGCAAGTTC 59.182 55.000 0.00 0.00 42.99 3.01
44 45 0.179097 CGCTAGGAGGAGCAAGTTCC 60.179 60.000 0.00 0.00 42.99 3.62
50 51 3.614399 AGGAGCAAGTTCCTGTTCG 57.386 52.632 4.56 0.00 45.84 3.95
51 52 1.048601 AGGAGCAAGTTCCTGTTCGA 58.951 50.000 4.56 0.00 45.84 3.71
52 53 1.001406 AGGAGCAAGTTCCTGTTCGAG 59.999 52.381 4.56 0.00 45.84 4.04
53 54 1.000955 GGAGCAAGTTCCTGTTCGAGA 59.999 52.381 0.00 0.00 34.27 4.04
54 55 2.548067 GGAGCAAGTTCCTGTTCGAGAA 60.548 50.000 0.00 0.00 34.27 2.87
57 58 4.137543 AGCAAGTTCCTGTTCGAGAAAAT 58.862 39.130 0.00 0.00 0.00 1.82
58 59 4.023707 AGCAAGTTCCTGTTCGAGAAAATG 60.024 41.667 0.00 0.00 0.00 2.32
60 61 3.476552 AGTTCCTGTTCGAGAAAATGCA 58.523 40.909 0.00 0.00 0.00 3.96
61 62 3.499918 AGTTCCTGTTCGAGAAAATGCAG 59.500 43.478 0.00 0.00 0.00 4.41
62 63 3.126001 TCCTGTTCGAGAAAATGCAGT 57.874 42.857 0.00 0.00 0.00 4.40
63 64 4.265904 TCCTGTTCGAGAAAATGCAGTA 57.734 40.909 0.00 0.00 0.00 2.74
64 65 4.832248 TCCTGTTCGAGAAAATGCAGTAT 58.168 39.130 0.00 0.00 0.00 2.12
65 66 5.245531 TCCTGTTCGAGAAAATGCAGTATT 58.754 37.500 0.00 0.00 0.00 1.89
66 67 5.705441 TCCTGTTCGAGAAAATGCAGTATTT 59.295 36.000 0.00 0.00 40.67 1.40
68 69 6.306356 CCTGTTCGAGAAAATGCAGTATTTTG 59.694 38.462 13.36 0.94 46.27 2.44
72 73 7.851822 TCGAGAAAATGCAGTATTTTGTTTC 57.148 32.000 13.36 7.76 46.27 2.78
73 74 7.421599 TCGAGAAAATGCAGTATTTTGTTTCA 58.578 30.769 13.36 0.00 46.27 2.69
76 77 9.415544 GAGAAAATGCAGTATTTTGTTTCATCT 57.584 29.630 13.36 3.37 46.27 2.90
79 80 9.545105 AAAATGCAGTATTTTGTTTCATCTTCA 57.455 25.926 8.29 0.00 44.98 3.02
80 81 9.545105 AAATGCAGTATTTTGTTTCATCTTCAA 57.455 25.926 0.00 0.00 35.47 2.69
82 83 8.746922 TGCAGTATTTTGTTTCATCTTCAATC 57.253 30.769 0.00 0.00 0.00 2.67
83 84 8.358895 TGCAGTATTTTGTTTCATCTTCAATCA 58.641 29.630 0.00 0.00 0.00 2.57
84 85 8.642020 GCAGTATTTTGTTTCATCTTCAATCAC 58.358 33.333 0.00 0.00 0.00 3.06
85 86 9.903682 CAGTATTTTGTTTCATCTTCAATCACT 57.096 29.630 0.00 0.00 0.00 3.41
86 87 9.903682 AGTATTTTGTTTCATCTTCAATCACTG 57.096 29.630 0.00 0.00 0.00 3.66
87 88 9.683069 GTATTTTGTTTCATCTTCAATCACTGT 57.317 29.630 0.00 0.00 0.00 3.55
92 93 9.681692 TTGTTTCATCTTCAATCACTGTAAATG 57.318 29.630 0.00 0.00 0.00 2.32
96 97 9.681692 TTCATCTTCAATCACTGTAAATGTTTG 57.318 29.630 0.00 0.00 0.00 2.93
97 98 9.065798 TCATCTTCAATCACTGTAAATGTTTGA 57.934 29.630 0.00 0.00 35.16 2.69
98 99 9.338291 CATCTTCAATCACTGTAAATGTTTGAG 57.662 33.333 0.00 0.00 37.19 3.02
99 100 8.675705 TCTTCAATCACTGTAAATGTTTGAGA 57.324 30.769 0.00 0.00 37.19 3.27
100 101 9.119418 TCTTCAATCACTGTAAATGTTTGAGAA 57.881 29.630 0.00 0.00 37.19 2.87
106 107 9.825972 ATCACTGTAAATGTTTGAGAAAATACG 57.174 29.630 0.00 0.00 0.00 3.06
107 108 8.286800 TCACTGTAAATGTTTGAGAAAATACGG 58.713 33.333 0.00 0.00 0.00 4.02
108 109 8.286800 CACTGTAAATGTTTGAGAAAATACGGA 58.713 33.333 0.00 0.00 0.00 4.69
109 110 9.010029 ACTGTAAATGTTTGAGAAAATACGGAT 57.990 29.630 0.00 0.00 0.00 4.18
111 112 9.619316 TGTAAATGTTTGAGAAAATACGGATTG 57.381 29.630 0.00 0.00 0.00 2.67
112 113 9.834628 GTAAATGTTTGAGAAAATACGGATTGA 57.165 29.630 0.00 0.00 0.00 2.57
114 115 9.757227 AAATGTTTGAGAAAATACGGATTGAAA 57.243 25.926 0.00 0.00 0.00 2.69
115 116 9.927668 AATGTTTGAGAAAATACGGATTGAAAT 57.072 25.926 0.00 0.00 0.00 2.17
141 142 4.497473 TTTTTGAGTTATGGGCACTTCG 57.503 40.909 0.00 0.00 0.00 3.79
143 144 2.851263 TGAGTTATGGGCACTTCGTT 57.149 45.000 0.00 0.00 0.00 3.85
144 145 3.965379 TGAGTTATGGGCACTTCGTTA 57.035 42.857 0.00 0.00 0.00 3.18
145 146 4.481368 TGAGTTATGGGCACTTCGTTAT 57.519 40.909 0.00 0.00 0.00 1.89
146 147 4.188462 TGAGTTATGGGCACTTCGTTATG 58.812 43.478 0.00 0.00 0.00 1.90
148 149 2.943033 GTTATGGGCACTTCGTTATGCT 59.057 45.455 7.31 0.00 41.74 3.79
149 150 2.128771 ATGGGCACTTCGTTATGCTT 57.871 45.000 7.31 0.00 41.74 3.91
150 151 1.448985 TGGGCACTTCGTTATGCTTC 58.551 50.000 7.31 2.62 41.74 3.86
152 153 1.398390 GGGCACTTCGTTATGCTTCTG 59.602 52.381 7.31 0.00 41.74 3.02
153 154 1.398390 GGCACTTCGTTATGCTTCTGG 59.602 52.381 7.31 0.00 41.74 3.86
154 155 1.398390 GCACTTCGTTATGCTTCTGGG 59.602 52.381 0.00 0.00 38.84 4.45
155 156 2.699954 CACTTCGTTATGCTTCTGGGT 58.300 47.619 0.00 0.00 0.00 4.51
156 157 2.416547 CACTTCGTTATGCTTCTGGGTG 59.583 50.000 0.00 0.00 0.00 4.61
157 158 2.009774 CTTCGTTATGCTTCTGGGTGG 58.990 52.381 0.00 0.00 0.00 4.61
160 161 2.238646 TCGTTATGCTTCTGGGTGGATT 59.761 45.455 0.00 0.00 0.00 3.01
162 163 3.620488 GTTATGCTTCTGGGTGGATTCA 58.380 45.455 0.00 0.00 0.00 2.57
163 164 4.210331 GTTATGCTTCTGGGTGGATTCAT 58.790 43.478 0.00 0.00 0.00 2.57
165 166 4.524802 ATGCTTCTGGGTGGATTCATAA 57.475 40.909 0.00 0.00 0.00 1.90
166 167 4.314522 TGCTTCTGGGTGGATTCATAAA 57.685 40.909 0.00 0.00 0.00 1.40
167 168 4.016444 TGCTTCTGGGTGGATTCATAAAC 58.984 43.478 0.00 0.00 0.00 2.01
168 169 4.263905 TGCTTCTGGGTGGATTCATAAACT 60.264 41.667 0.00 0.00 0.00 2.66
169 170 5.045213 TGCTTCTGGGTGGATTCATAAACTA 60.045 40.000 0.00 0.00 0.00 2.24
170 171 6.064717 GCTTCTGGGTGGATTCATAAACTAT 58.935 40.000 0.00 0.00 0.00 2.12
171 172 6.547510 GCTTCTGGGTGGATTCATAAACTATT 59.452 38.462 0.00 0.00 0.00 1.73
172 173 7.068716 GCTTCTGGGTGGATTCATAAACTATTT 59.931 37.037 0.00 0.00 0.00 1.40
173 174 9.627123 CTTCTGGGTGGATTCATAAACTATTTA 57.373 33.333 0.00 0.00 0.00 1.40
196 197 5.132897 TGGGACAAATACAGTTGAAATGC 57.867 39.130 0.00 0.00 31.92 3.56
197 198 4.021544 TGGGACAAATACAGTTGAAATGCC 60.022 41.667 0.00 0.00 31.92 4.40
198 199 4.021544 GGGACAAATACAGTTGAAATGCCA 60.022 41.667 0.00 0.00 32.59 4.92
200 201 6.127479 GGGACAAATACAGTTGAAATGCCATA 60.127 38.462 0.00 0.00 32.59 2.74
201 202 7.417797 GGGACAAATACAGTTGAAATGCCATAT 60.418 37.037 0.00 0.00 32.59 1.78
202 203 8.629158 GGACAAATACAGTTGAAATGCCATATA 58.371 33.333 0.00 0.00 32.59 0.86
236 237 6.338146 TGAACATATAAGCTACAGTGTCACC 58.662 40.000 0.00 0.00 0.00 4.02
238 239 6.485830 ACATATAAGCTACAGTGTCACCAT 57.514 37.500 0.00 0.00 0.00 3.55
239 240 6.889198 ACATATAAGCTACAGTGTCACCATT 58.111 36.000 0.00 0.00 0.00 3.16
240 241 7.338710 ACATATAAGCTACAGTGTCACCATTT 58.661 34.615 0.00 0.00 0.00 2.32
241 242 7.495934 ACATATAAGCTACAGTGTCACCATTTC 59.504 37.037 0.00 0.00 0.00 2.17
242 243 3.769739 AGCTACAGTGTCACCATTTCA 57.230 42.857 0.00 0.00 0.00 2.69
243 244 4.292186 AGCTACAGTGTCACCATTTCAT 57.708 40.909 0.00 0.00 0.00 2.57
244 245 4.655963 AGCTACAGTGTCACCATTTCATT 58.344 39.130 0.00 0.00 0.00 2.57
245 246 4.697352 AGCTACAGTGTCACCATTTCATTC 59.303 41.667 0.00 0.00 0.00 2.67
246 247 4.142600 GCTACAGTGTCACCATTTCATTCC 60.143 45.833 0.00 0.00 0.00 3.01
247 248 3.831323 ACAGTGTCACCATTTCATTCCA 58.169 40.909 0.00 0.00 0.00 3.53
248 249 4.410099 ACAGTGTCACCATTTCATTCCAT 58.590 39.130 0.00 0.00 0.00 3.41
249 250 4.460382 ACAGTGTCACCATTTCATTCCATC 59.540 41.667 0.00 0.00 0.00 3.51
250 251 4.703575 CAGTGTCACCATTTCATTCCATCT 59.296 41.667 0.00 0.00 0.00 2.90
251 252 4.946157 AGTGTCACCATTTCATTCCATCTC 59.054 41.667 0.00 0.00 0.00 2.75
252 253 4.701651 GTGTCACCATTTCATTCCATCTCA 59.298 41.667 0.00 0.00 0.00 3.27
253 254 5.359009 GTGTCACCATTTCATTCCATCTCAT 59.641 40.000 0.00 0.00 0.00 2.90
255 256 7.067372 GTGTCACCATTTCATTCCATCTCATTA 59.933 37.037 0.00 0.00 0.00 1.90
257 258 7.917505 GTCACCATTTCATTCCATCTCATTAAC 59.082 37.037 0.00 0.00 0.00 2.01
258 259 7.068593 TCACCATTTCATTCCATCTCATTAACC 59.931 37.037 0.00 0.00 0.00 2.85
259 260 6.896860 ACCATTTCATTCCATCTCATTAACCA 59.103 34.615 0.00 0.00 0.00 3.67
260 261 7.399765 ACCATTTCATTCCATCTCATTAACCAA 59.600 33.333 0.00 0.00 0.00 3.67
261 262 8.259411 CCATTTCATTCCATCTCATTAACCAAA 58.741 33.333 0.00 0.00 0.00 3.28
263 264 7.773489 TTCATTCCATCTCATTAACCAAACA 57.227 32.000 0.00 0.00 0.00 2.83
264 265 7.959658 TCATTCCATCTCATTAACCAAACAT 57.040 32.000 0.00 0.00 0.00 2.71
265 266 8.365060 TCATTCCATCTCATTAACCAAACATT 57.635 30.769 0.00 0.00 0.00 2.71
266 267 8.252417 TCATTCCATCTCATTAACCAAACATTG 58.748 33.333 0.00 0.00 0.00 2.82
267 268 7.773489 TTCCATCTCATTAACCAAACATTGA 57.227 32.000 0.00 0.00 0.00 2.57
268 269 7.773489 TCCATCTCATTAACCAAACATTGAA 57.227 32.000 0.00 0.00 0.00 2.69
269 270 8.187913 TCCATCTCATTAACCAAACATTGAAA 57.812 30.769 0.00 0.00 0.00 2.69
271 272 8.875803 CCATCTCATTAACCAAACATTGAAATG 58.124 33.333 1.45 1.45 42.10 2.32
283 284 5.902613 ACATTGAAATGTCATCGTTCCAT 57.097 34.783 2.80 0.00 46.10 3.41
284 285 6.271488 ACATTGAAATGTCATCGTTCCATT 57.729 33.333 2.80 0.00 46.10 3.16
287 288 4.331108 TGAAATGTCATCGTTCCATTCCA 58.669 39.130 0.00 0.00 0.00 3.53
291 292 5.551305 ATGTCATCGTTCCATTCCATCTA 57.449 39.130 0.00 0.00 0.00 1.98
292 293 5.551305 TGTCATCGTTCCATTCCATCTAT 57.449 39.130 0.00 0.00 0.00 1.98
293 294 6.664428 TGTCATCGTTCCATTCCATCTATA 57.336 37.500 0.00 0.00 0.00 1.31
294 295 6.691508 TGTCATCGTTCCATTCCATCTATAG 58.308 40.000 0.00 0.00 0.00 1.31
295 296 5.578727 GTCATCGTTCCATTCCATCTATAGC 59.421 44.000 0.00 0.00 0.00 2.97
296 297 4.537135 TCGTTCCATTCCATCTATAGCC 57.463 45.455 0.00 0.00 0.00 3.93
297 298 3.260884 TCGTTCCATTCCATCTATAGCCC 59.739 47.826 0.00 0.00 0.00 5.19
298 299 3.261897 CGTTCCATTCCATCTATAGCCCT 59.738 47.826 0.00 0.00 0.00 5.19
299 300 4.621747 CGTTCCATTCCATCTATAGCCCTC 60.622 50.000 0.00 0.00 0.00 4.30
300 301 4.146245 TCCATTCCATCTATAGCCCTCA 57.854 45.455 0.00 0.00 0.00 3.86
303 304 4.288105 CCATTCCATCTATAGCCCTCAACT 59.712 45.833 0.00 0.00 0.00 3.16
305 306 6.013379 CCATTCCATCTATAGCCCTCAACTAA 60.013 42.308 0.00 0.00 0.00 2.24
306 307 7.453393 CATTCCATCTATAGCCCTCAACTAAA 58.547 38.462 0.00 0.00 0.00 1.85
307 308 6.420913 TCCATCTATAGCCCTCAACTAAAC 57.579 41.667 0.00 0.00 0.00 2.01
308 309 5.903010 TCCATCTATAGCCCTCAACTAAACA 59.097 40.000 0.00 0.00 0.00 2.83
310 311 7.733047 TCCATCTATAGCCCTCAACTAAACATA 59.267 37.037 0.00 0.00 0.00 2.29
311 312 8.543774 CCATCTATAGCCCTCAACTAAACATAT 58.456 37.037 0.00 0.00 0.00 1.78
312 313 9.376075 CATCTATAGCCCTCAACTAAACATATG 57.624 37.037 0.00 0.00 0.00 1.78
313 314 7.907389 TCTATAGCCCTCAACTAAACATATGG 58.093 38.462 7.80 0.00 0.00 2.74
314 315 6.763715 ATAGCCCTCAACTAAACATATGGA 57.236 37.500 7.80 0.00 0.00 3.41
315 316 4.781934 AGCCCTCAACTAAACATATGGAC 58.218 43.478 7.80 0.00 0.00 4.02
316 317 4.227300 AGCCCTCAACTAAACATATGGACA 59.773 41.667 7.80 0.00 0.00 4.02
317 318 4.947388 GCCCTCAACTAAACATATGGACAA 59.053 41.667 7.80 0.00 0.00 3.18
318 319 5.417580 GCCCTCAACTAAACATATGGACAAA 59.582 40.000 7.80 0.00 0.00 2.83
319 320 6.071616 GCCCTCAACTAAACATATGGACAAAA 60.072 38.462 7.80 0.00 0.00 2.44
320 321 7.312899 CCCTCAACTAAACATATGGACAAAAC 58.687 38.462 7.80 0.00 0.00 2.43
321 322 7.312899 CCTCAACTAAACATATGGACAAAACC 58.687 38.462 7.80 0.00 0.00 3.27
322 323 6.904498 TCAACTAAACATATGGACAAAACCG 58.096 36.000 7.80 0.00 0.00 4.44
323 324 6.711194 TCAACTAAACATATGGACAAAACCGA 59.289 34.615 7.80 0.00 0.00 4.69
324 325 6.490566 ACTAAACATATGGACAAAACCGAC 57.509 37.500 7.80 0.00 0.00 4.79
327 328 2.040545 ACATATGGACAAAACCGACCCA 59.959 45.455 7.80 0.00 0.00 4.51
329 330 2.302587 ATGGACAAAACCGACCCATT 57.697 45.000 0.00 0.00 34.19 3.16
330 331 1.611519 TGGACAAAACCGACCCATTC 58.388 50.000 0.00 0.00 0.00 2.67
331 332 1.144093 TGGACAAAACCGACCCATTCT 59.856 47.619 0.00 0.00 0.00 2.40
332 333 2.372504 TGGACAAAACCGACCCATTCTA 59.627 45.455 0.00 0.00 0.00 2.10
335 336 4.142469 GGACAAAACCGACCCATTCTAATG 60.142 45.833 0.00 0.00 36.17 1.90
336 337 4.658063 ACAAAACCGACCCATTCTAATGA 58.342 39.130 4.25 0.00 38.70 2.57
337 338 5.074115 ACAAAACCGACCCATTCTAATGAA 58.926 37.500 4.25 0.00 38.70 2.57
340 341 5.835113 AACCGACCCATTCTAATGAAATG 57.165 39.130 4.25 0.00 38.70 2.32
341 342 4.207165 ACCGACCCATTCTAATGAAATGG 58.793 43.478 7.72 7.72 38.70 3.16
343 344 4.887071 CCGACCCATTCTAATGAAATGGAA 59.113 41.667 14.83 0.00 38.70 3.53
344 345 5.221048 CCGACCCATTCTAATGAAATGGAAC 60.221 44.000 14.83 8.21 38.70 3.62
345 346 5.221048 CGACCCATTCTAATGAAATGGAACC 60.221 44.000 14.83 4.50 38.70 3.62
346 347 5.588845 ACCCATTCTAATGAAATGGAACCA 58.411 37.500 14.83 0.00 38.70 3.67
347 348 6.204555 ACCCATTCTAATGAAATGGAACCAT 58.795 36.000 14.83 0.00 38.70 3.55
349 350 6.324512 CCCATTCTAATGAAATGGAACCATGA 59.675 38.462 14.83 0.00 38.70 3.07
350 351 7.205297 CCATTCTAATGAAATGGAACCATGAC 58.795 38.462 7.12 5.55 38.70 3.06
351 352 7.147863 CCATTCTAATGAAATGGAACCATGACA 60.148 37.037 7.12 10.46 38.70 3.58
353 354 7.959658 TCTAATGAAATGGAACCATGACATT 57.040 32.000 25.33 25.33 41.22 2.71
354 355 9.473007 TTCTAATGAAATGGAACCATGACATTA 57.527 29.630 25.07 25.07 40.16 1.90
356 357 7.479352 AATGAAATGGAACCATGACATTACA 57.521 32.000 23.17 11.86 39.11 2.41
357 358 7.664552 ATGAAATGGAACCATGACATTACAT 57.335 32.000 7.12 0.00 36.68 2.29
361 362 7.479352 AATGGAACCATGACATTACATTTCA 57.521 32.000 7.12 0.00 36.17 2.69
363 364 6.009589 TGGAACCATGACATTACATTTCACT 58.990 36.000 0.00 0.00 0.00 3.41
365 366 6.808212 GGAACCATGACATTACATTTCACTTG 59.192 38.462 0.00 0.00 0.00 3.16
366 367 6.271488 ACCATGACATTACATTTCACTTGG 57.729 37.500 0.00 0.00 0.00 3.61
368 369 6.267471 ACCATGACATTACATTTCACTTGGTT 59.733 34.615 0.00 0.00 32.98 3.67
369 370 6.808212 CCATGACATTACATTTCACTTGGTTC 59.192 38.462 0.00 0.00 0.00 3.62
370 371 6.325919 TGACATTACATTTCACTTGGTTCC 57.674 37.500 0.00 0.00 0.00 3.62
371 372 5.242838 TGACATTACATTTCACTTGGTTCCC 59.757 40.000 0.00 0.00 0.00 3.97
372 373 5.393866 ACATTACATTTCACTTGGTTCCCT 58.606 37.500 0.00 0.00 0.00 4.20
373 374 6.548321 ACATTACATTTCACTTGGTTCCCTA 58.452 36.000 0.00 0.00 0.00 3.53
375 376 6.887626 TTACATTTCACTTGGTTCCCTAAC 57.112 37.500 0.00 0.00 34.66 2.34
386 387 1.958579 GTTCCCTAACCAAACACACCC 59.041 52.381 0.00 0.00 0.00 4.61
387 388 1.525175 TCCCTAACCAAACACACCCT 58.475 50.000 0.00 0.00 0.00 4.34
389 390 3.054576 TCCCTAACCAAACACACCCTTA 58.945 45.455 0.00 0.00 0.00 2.69
390 391 3.151554 CCCTAACCAAACACACCCTTAC 58.848 50.000 0.00 0.00 0.00 2.34
391 392 3.181437 CCCTAACCAAACACACCCTTACT 60.181 47.826 0.00 0.00 0.00 2.24
393 394 5.456474 CCCTAACCAAACACACCCTTACTAA 60.456 44.000 0.00 0.00 0.00 2.24
394 395 5.471116 CCTAACCAAACACACCCTTACTAAC 59.529 44.000 0.00 0.00 0.00 2.34
395 396 4.783560 ACCAAACACACCCTTACTAACT 57.216 40.909 0.00 0.00 0.00 2.24
396 397 5.120054 ACCAAACACACCCTTACTAACTT 57.880 39.130 0.00 0.00 0.00 2.66
398 399 5.127491 CCAAACACACCCTTACTAACTTCA 58.873 41.667 0.00 0.00 0.00 3.02
399 400 5.008316 CCAAACACACCCTTACTAACTTCAC 59.992 44.000 0.00 0.00 0.00 3.18
401 402 5.625568 ACACACCCTTACTAACTTCACTT 57.374 39.130 0.00 0.00 0.00 3.16
402 403 6.736110 ACACACCCTTACTAACTTCACTTA 57.264 37.500 0.00 0.00 0.00 2.24
404 405 7.384477 ACACACCCTTACTAACTTCACTTATC 58.616 38.462 0.00 0.00 0.00 1.75
406 407 6.435277 ACACCCTTACTAACTTCACTTATCGA 59.565 38.462 0.00 0.00 0.00 3.59
407 408 6.750963 CACCCTTACTAACTTCACTTATCGAC 59.249 42.308 0.00 0.00 0.00 4.20
408 409 5.970023 CCCTTACTAACTTCACTTATCGACG 59.030 44.000 0.00 0.00 0.00 5.12
409 410 6.404074 CCCTTACTAACTTCACTTATCGACGT 60.404 42.308 0.00 0.00 0.00 4.34
410 411 6.468319 CCTTACTAACTTCACTTATCGACGTG 59.532 42.308 0.00 5.28 0.00 4.49
411 412 4.164294 ACTAACTTCACTTATCGACGTGC 58.836 43.478 0.00 0.00 0.00 5.34
412 413 1.614385 ACTTCACTTATCGACGTGCG 58.386 50.000 0.00 0.00 42.69 5.34
415 416 2.578713 ACTTATCGACGTGCGCCG 60.579 61.111 15.25 15.25 44.03 6.46
416 417 3.972803 CTTATCGACGTGCGCCGC 61.973 66.667 16.48 0.00 41.42 6.53
427 428 4.807039 GCGCCGCCCGAACTAGAA 62.807 66.667 0.00 0.00 40.02 2.10
428 429 2.125832 CGCCGCCCGAACTAGAAA 60.126 61.111 0.00 0.00 40.02 2.52
429 430 2.450345 CGCCGCCCGAACTAGAAAC 61.450 63.158 0.00 0.00 40.02 2.78
430 431 2.104859 GCCGCCCGAACTAGAAACC 61.105 63.158 0.00 0.00 0.00 3.27
431 432 1.808390 CCGCCCGAACTAGAAACCG 60.808 63.158 0.00 0.00 0.00 4.44
432 433 1.080298 CGCCCGAACTAGAAACCGT 60.080 57.895 0.00 0.00 0.00 4.83
433 434 0.171007 CGCCCGAACTAGAAACCGTA 59.829 55.000 0.00 0.00 0.00 4.02
434 435 1.202336 CGCCCGAACTAGAAACCGTAT 60.202 52.381 0.00 0.00 0.00 3.06
435 436 2.199236 GCCCGAACTAGAAACCGTATG 58.801 52.381 0.00 0.00 0.00 2.39
436 437 2.199236 CCCGAACTAGAAACCGTATGC 58.801 52.381 0.00 0.00 0.00 3.14
437 438 1.850441 CCGAACTAGAAACCGTATGCG 59.150 52.381 0.00 0.00 37.95 4.73
438 439 2.523015 CGAACTAGAAACCGTATGCGT 58.477 47.619 1.69 0.00 36.15 5.24
439 440 2.278094 CGAACTAGAAACCGTATGCGTG 59.722 50.000 1.69 0.00 36.15 5.34
440 441 1.636988 ACTAGAAACCGTATGCGTGC 58.363 50.000 1.69 0.00 36.15 5.34
441 442 1.067425 ACTAGAAACCGTATGCGTGCA 60.067 47.619 1.69 0.00 36.15 4.57
442 443 1.996898 CTAGAAACCGTATGCGTGCAA 59.003 47.619 1.69 0.00 36.15 4.08
443 444 1.231221 AGAAACCGTATGCGTGCAAA 58.769 45.000 1.69 0.00 36.15 3.68
483 484 6.927746 GCATGTGCGCTAATCTATATCTAAC 58.072 40.000 9.73 0.00 0.00 2.34
484 485 6.754209 GCATGTGCGCTAATCTATATCTAACT 59.246 38.462 9.73 0.00 0.00 2.24
485 486 7.915923 GCATGTGCGCTAATCTATATCTAACTA 59.084 37.037 9.73 0.00 0.00 2.24
487 488 7.473366 TGTGCGCTAATCTATATCTAACTAGC 58.527 38.462 9.73 0.00 0.00 3.42
488 489 7.337184 TGTGCGCTAATCTATATCTAACTAGCT 59.663 37.037 9.73 0.00 0.00 3.32
489 490 8.828644 GTGCGCTAATCTATATCTAACTAGCTA 58.171 37.037 9.73 0.00 0.00 3.32
490 491 9.047371 TGCGCTAATCTATATCTAACTAGCTAG 57.953 37.037 19.44 19.44 0.00 3.42
491 492 8.013378 GCGCTAATCTATATCTAACTAGCTAGC 58.987 40.741 20.91 6.62 0.00 3.42
492 493 8.500773 CGCTAATCTATATCTAACTAGCTAGCC 58.499 40.741 20.91 0.00 30.39 3.93
494 495 9.854668 CTAATCTATATCTAACTAGCTAGCCCA 57.145 37.037 20.91 5.09 0.00 5.36
496 497 9.722317 AATCTATATCTAACTAGCTAGCCCATT 57.278 33.333 20.91 9.86 0.00 3.16
498 499 4.899352 ATCTAACTAGCTAGCCCATTGG 57.101 45.455 20.91 9.44 0.00 3.16
499 500 3.654273 TCTAACTAGCTAGCCCATTGGT 58.346 45.455 20.91 0.00 0.00 3.67
500 501 2.717639 AACTAGCTAGCCCATTGGTG 57.282 50.000 20.91 0.00 0.00 4.17
502 503 2.196595 ACTAGCTAGCCCATTGGTGAA 58.803 47.619 20.91 0.00 0.00 3.18
504 505 2.134789 AGCTAGCCCATTGGTGAAAG 57.865 50.000 12.13 0.00 0.00 2.62
505 506 1.635487 AGCTAGCCCATTGGTGAAAGA 59.365 47.619 12.13 0.00 0.00 2.52
508 509 0.613012 AGCCCATTGGTGAAAGAGGC 60.613 55.000 1.20 0.00 39.25 4.70
509 510 1.937546 GCCCATTGGTGAAAGAGGCG 61.938 60.000 1.20 0.00 32.07 5.52
510 511 1.315257 CCCATTGGTGAAAGAGGCGG 61.315 60.000 1.20 0.00 0.00 6.13
511 512 1.508088 CATTGGTGAAAGAGGCGGC 59.492 57.895 0.00 0.00 0.00 6.53
512 513 2.040544 ATTGGTGAAAGAGGCGGCG 61.041 57.895 0.51 0.51 0.00 6.46
514 515 2.102109 TTGGTGAAAGAGGCGGCGTA 62.102 55.000 9.37 0.00 0.00 4.42
515 516 1.375013 GGTGAAAGAGGCGGCGTAA 60.375 57.895 9.37 0.00 0.00 3.18
518 519 1.467342 GTGAAAGAGGCGGCGTAATTT 59.533 47.619 9.37 4.99 0.00 1.82
519 520 1.735571 TGAAAGAGGCGGCGTAATTTC 59.264 47.619 18.46 18.46 0.00 2.17
520 521 2.007608 GAAAGAGGCGGCGTAATTTCT 58.992 47.619 9.37 7.05 0.00 2.52
521 522 2.109425 AAGAGGCGGCGTAATTTCTT 57.891 45.000 9.37 2.96 0.00 2.52
522 523 2.109425 AGAGGCGGCGTAATTTCTTT 57.891 45.000 9.37 0.00 0.00 2.52
523 524 2.433436 AGAGGCGGCGTAATTTCTTTT 58.567 42.857 9.37 0.00 0.00 2.27
524 525 2.817844 AGAGGCGGCGTAATTTCTTTTT 59.182 40.909 9.37 0.00 0.00 1.94
525 526 3.119955 AGAGGCGGCGTAATTTCTTTTTC 60.120 43.478 9.37 0.00 0.00 2.29
526 527 1.908889 GGCGGCGTAATTTCTTTTTCG 59.091 47.619 9.37 0.00 0.00 3.46
527 528 2.413108 GGCGGCGTAATTTCTTTTTCGA 60.413 45.455 9.37 0.00 0.00 3.71
528 529 2.838452 GCGGCGTAATTTCTTTTTCGAG 59.162 45.455 9.37 0.00 0.00 4.04
529 530 3.666111 GCGGCGTAATTTCTTTTTCGAGT 60.666 43.478 9.37 0.00 0.00 4.18
530 531 3.838550 CGGCGTAATTTCTTTTTCGAGTG 59.161 43.478 0.00 0.00 0.00 3.51
531 532 4.609783 CGGCGTAATTTCTTTTTCGAGTGT 60.610 41.667 0.00 0.00 0.00 3.55
556 561 1.883926 AGGCGGCTTTTAATTTGTCGT 59.116 42.857 5.25 0.00 0.00 4.34
557 562 2.295070 AGGCGGCTTTTAATTTGTCGTT 59.705 40.909 5.25 0.00 0.00 3.85
564 569 7.515528 GCGGCTTTTAATTTGTCGTTAAAAAGT 60.516 33.333 0.00 0.00 39.28 2.66
565 570 7.994343 CGGCTTTTAATTTGTCGTTAAAAAGTC 59.006 33.333 0.00 0.00 39.28 3.01
566 571 8.809478 GGCTTTTAATTTGTCGTTAAAAAGTCA 58.191 29.630 5.38 0.00 39.28 3.41
582 587 1.599071 AGTCAGTTCATTGTGCACACG 59.401 47.619 21.56 14.21 0.00 4.49
750 3892 7.692705 GGATCGACTTTTACTTGTTAATCTTGC 59.307 37.037 0.00 0.00 0.00 4.01
842 3991 2.095847 GTGTTATCGCACGCCGGAA 61.096 57.895 5.05 0.00 37.59 4.30
896 4061 0.653636 GGAACAACGCAGAAACGACA 59.346 50.000 0.00 0.00 36.70 4.35
1026 4231 2.099062 CATCGAGGCGTTGCTTGC 59.901 61.111 0.00 0.00 0.00 4.01
1115 4354 4.735132 TGGTGTGCGCGCTCCTAC 62.735 66.667 34.10 22.07 0.00 3.18
1227 4472 1.886542 GAAAGGGCGTTTTGTCAGGAT 59.113 47.619 6.62 0.00 0.00 3.24
1382 4630 6.905076 GCATTGAGCTTTCATGCAATAAATTG 59.095 34.615 16.68 0.00 41.15 2.32
1440 4752 4.183865 TCACAAGCATATGTCTACAGTGC 58.816 43.478 4.29 12.70 39.92 4.40
1530 4866 6.430000 GTGGAACAGGTTATATGTTGTCACTT 59.570 38.462 0.00 0.00 41.80 3.16
1535 4871 8.232913 ACAGGTTATATGTTGTCACTTGTTTT 57.767 30.769 0.00 0.00 0.00 2.43
1582 4919 7.721286 TTATCCGCATTTTGTCATTGTTTTT 57.279 28.000 0.00 0.00 0.00 1.94
1584 4921 4.208047 TCCGCATTTTGTCATTGTTTTTCG 59.792 37.500 0.00 0.00 0.00 3.46
1625 4962 0.666913 CGTCTACCCTATGTGTCCCG 59.333 60.000 0.00 0.00 0.00 5.14
1635 4973 4.705023 CCCTATGTGTCCCGAATTTCTTTT 59.295 41.667 0.00 0.00 0.00 2.27
1688 5029 2.165357 AATCTTTCATTCCCCTGGCC 57.835 50.000 0.00 0.00 0.00 5.36
1712 5053 9.555727 GCCAACTTATACATCTTTAGAATACCA 57.444 33.333 0.00 0.00 0.00 3.25
1753 5350 4.020662 GGTAAAATTGCATCCTCCCAAACA 60.021 41.667 0.00 0.00 0.00 2.83
1842 5439 3.876309 ATAATACCATCGGTTGCCCTT 57.124 42.857 0.00 0.00 37.09 3.95
1845 5442 1.847798 TACCATCGGTTGCCCTTGCT 61.848 55.000 0.00 0.00 37.09 3.91
1859 5456 2.817258 CCCTTGCTTTTGACCGTCAATA 59.183 45.455 14.64 9.25 36.11 1.90
1874 5471 5.011635 ACCGTCAATATACCATCTACATGCA 59.988 40.000 0.00 0.00 0.00 3.96
1886 5483 0.764890 TACATGCAGGGGTGGCTATC 59.235 55.000 2.31 0.00 0.00 2.08
1888 5485 0.536687 CATGCAGGGGTGGCTATCAG 60.537 60.000 0.00 0.00 0.00 2.90
1889 5486 2.203266 GCAGGGGTGGCTATCAGC 60.203 66.667 0.00 0.00 42.74 4.26
1891 5488 1.842007 CAGGGGTGGCTATCAGCAT 59.158 57.895 0.00 0.00 44.75 3.79
1892 5489 0.250640 CAGGGGTGGCTATCAGCATC 60.251 60.000 0.00 0.00 44.75 3.91
1900 5500 4.190001 GTGGCTATCAGCATCATAGATGG 58.810 47.826 8.87 0.00 44.75 3.51
1949 5850 6.316390 CCATATTGGTACACTTCCTGAGTTTC 59.684 42.308 0.00 0.00 39.29 2.78
1951 5852 4.067972 TGGTACACTTCCTGAGTTTCAC 57.932 45.455 0.00 0.00 36.10 3.18
1958 5859 1.271856 TCCTGAGTTTCACGGCCATA 58.728 50.000 2.24 0.00 0.00 2.74
1959 5860 1.626321 TCCTGAGTTTCACGGCCATAA 59.374 47.619 2.24 0.00 0.00 1.90
1960 5861 2.238646 TCCTGAGTTTCACGGCCATAAT 59.761 45.455 2.24 0.00 0.00 1.28
1973 5874 1.542915 GCCATAATGAGCGATGCCAAT 59.457 47.619 0.00 0.00 0.00 3.16
1982 5895 1.141657 AGCGATGCCAATCTACCATGT 59.858 47.619 0.00 0.00 0.00 3.21
1993 5906 8.214364 TGCCAATCTACCATGTACACATTATTA 58.786 33.333 0.00 0.00 33.61 0.98
2001 5914 8.703604 ACCATGTACACATTATTATCTATCGC 57.296 34.615 0.00 0.00 33.61 4.58
2023 7506 2.748461 TGTGCTTGCGTACAAACTTC 57.252 45.000 0.00 0.00 34.74 3.01
2024 7507 2.010497 TGTGCTTGCGTACAAACTTCA 58.990 42.857 0.00 0.00 34.74 3.02
2025 7508 2.223157 TGTGCTTGCGTACAAACTTCAC 60.223 45.455 0.00 0.00 34.74 3.18
2047 7530 9.676195 TTCACACACAATGTTAATATGTTTGAG 57.324 29.630 9.80 4.52 40.64 3.02
2075 7558 4.159244 ACCAACCAACACTAACTTGCTA 57.841 40.909 0.00 0.00 0.00 3.49
2109 7592 3.260884 AGCGGTCACTTTCTGGAATCTAA 59.739 43.478 0.00 0.00 0.00 2.10
2115 7598 8.338259 CGGTCACTTTCTGGAATCTAATTATTG 58.662 37.037 0.00 0.00 0.00 1.90
2124 7607 8.112822 TCTGGAATCTAATTATTGGGTTGTTCA 58.887 33.333 0.00 0.00 0.00 3.18
2130 7613 5.480642 AATTATTGGGTTGTTCATGCACA 57.519 34.783 0.00 0.00 0.00 4.57
2161 7644 4.616953 TCGAAAAAGGAAAACATTGCTCC 58.383 39.130 0.00 0.00 0.00 4.70
2167 7650 2.646798 AGGAAAACATTGCTCCTCTCCT 59.353 45.455 0.00 0.00 34.31 3.69
2170 7653 4.082517 GGAAAACATTGCTCCTCTCCTTTC 60.083 45.833 0.00 0.00 0.00 2.62
2171 7654 4.379302 AAACATTGCTCCTCTCCTTTCT 57.621 40.909 0.00 0.00 0.00 2.52
2173 7656 2.909006 ACATTGCTCCTCTCCTTTCTCA 59.091 45.455 0.00 0.00 0.00 3.27
2176 7659 4.647564 TTGCTCCTCTCCTTTCTCAAAT 57.352 40.909 0.00 0.00 0.00 2.32
2177 7660 4.213564 TGCTCCTCTCCTTTCTCAAATC 57.786 45.455 0.00 0.00 0.00 2.17
2179 7662 5.026121 TGCTCCTCTCCTTTCTCAAATCTA 58.974 41.667 0.00 0.00 0.00 1.98
2181 7665 5.453198 GCTCCTCTCCTTTCTCAAATCTAGG 60.453 48.000 0.00 0.00 0.00 3.02
2187 7671 6.272324 TCTCCTTTCTCAAATCTAGGAAACCA 59.728 38.462 0.00 0.00 34.77 3.67
2188 7672 7.032598 TCCTTTCTCAAATCTAGGAAACCAT 57.967 36.000 0.00 0.00 32.29 3.55
2189 7673 6.886459 TCCTTTCTCAAATCTAGGAAACCATG 59.114 38.462 0.00 0.00 32.29 3.66
2194 7678 6.881065 TCTCAAATCTAGGAAACCATGAGTTG 59.119 38.462 0.00 12.79 39.19 3.16
2196 7680 7.685481 TCAAATCTAGGAAACCATGAGTTGTA 58.315 34.615 15.91 6.94 39.19 2.41
2202 7693 6.635030 AGGAAACCATGAGTTGTAGAAAAC 57.365 37.500 0.00 0.00 39.19 2.43
2224 7716 5.212745 ACCCTCCAAAACCACTTTCAATTA 58.787 37.500 0.00 0.00 0.00 1.40
2248 7740 7.839680 AATAAGGATGGGCTTTCGAAATAAT 57.160 32.000 11.70 2.98 0.00 1.28
2320 7818 8.446599 TTTAGTGCTAGCTTTCAACTTTAACT 57.553 30.769 17.23 8.59 0.00 2.24
2323 7821 8.622948 AGTGCTAGCTTTCAACTTTAACTAAT 57.377 30.769 17.23 0.00 0.00 1.73
2331 7829 7.571080 TTTCAACTTTAACTAATTCCGGTGT 57.429 32.000 0.00 0.00 0.00 4.16
2348 7846 2.490902 GGTGTCAACCCCCAGAAATTCT 60.491 50.000 0.00 0.00 41.04 2.40
2355 7853 2.239907 ACCCCCAGAAATTCTAGTGCTC 59.760 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.162690 AAGACCGCATCGAGGGCC 62.163 66.667 0.00 0.00 37.55 5.80
4 5 2.278857 CGAAGACCGCATCGAGGG 60.279 66.667 0.00 0.00 41.43 4.30
5 6 2.278857 CCGAAGACCGCATCGAGG 60.279 66.667 0.00 0.00 41.43 4.63
6 7 1.140407 GAACCGAAGACCGCATCGAG 61.140 60.000 0.00 0.00 41.43 4.04
7 8 1.153901 GAACCGAAGACCGCATCGA 60.154 57.895 0.00 0.00 41.43 3.59
8 9 2.505498 CGAACCGAAGACCGCATCG 61.505 63.158 0.00 0.00 38.04 3.84
10 11 2.813908 GCGAACCGAAGACCGCAT 60.814 61.111 0.00 0.00 46.04 4.73
12 13 1.872679 CTAGCGAACCGAAGACCGC 60.873 63.158 0.00 0.00 47.00 5.68
14 15 0.100861 CTCCTAGCGAACCGAAGACC 59.899 60.000 0.00 0.00 0.00 3.85
16 17 0.034767 TCCTCCTAGCGAACCGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
17 18 0.382515 CTCCTCCTAGCGAACCGAAG 59.617 60.000 0.00 0.00 0.00 3.79
19 20 2.119655 GCTCCTCCTAGCGAACCGA 61.120 63.158 0.00 0.00 31.76 4.69
20 21 1.945354 TTGCTCCTCCTAGCGAACCG 61.945 60.000 0.00 0.00 45.85 4.44
21 22 0.179097 CTTGCTCCTCCTAGCGAACC 60.179 60.000 0.00 0.00 45.85 3.62
22 23 0.533032 ACTTGCTCCTCCTAGCGAAC 59.467 55.000 0.00 0.00 45.85 3.95
23 24 1.204941 GAACTTGCTCCTCCTAGCGAA 59.795 52.381 0.00 0.00 45.85 4.70
25 26 0.179097 GGAACTTGCTCCTCCTAGCG 60.179 60.000 0.00 0.00 45.85 4.26
27 28 2.183679 ACAGGAACTTGCTCCTCCTAG 58.816 52.381 0.00 0.00 44.46 3.02
28 29 2.327325 ACAGGAACTTGCTCCTCCTA 57.673 50.000 0.00 0.00 44.46 2.94
30 31 1.814793 GAACAGGAACTTGCTCCTCC 58.185 55.000 0.00 0.00 44.46 4.30
31 32 1.000955 TCGAACAGGAACTTGCTCCTC 59.999 52.381 0.00 0.00 44.46 3.71
34 35 2.440539 TCTCGAACAGGAACTTGCTC 57.559 50.000 0.00 0.00 34.60 4.26
35 36 2.910688 TTCTCGAACAGGAACTTGCT 57.089 45.000 0.00 0.00 34.60 3.91
36 37 3.963383 TTTTCTCGAACAGGAACTTGC 57.037 42.857 0.00 0.00 34.60 4.01
37 38 4.222114 GCATTTTCTCGAACAGGAACTTG 58.778 43.478 0.00 0.00 34.60 3.16
38 39 3.882888 TGCATTTTCTCGAACAGGAACTT 59.117 39.130 0.00 0.00 34.60 2.66
39 40 3.476552 TGCATTTTCTCGAACAGGAACT 58.523 40.909 0.00 0.00 43.88 3.01
40 41 3.251004 ACTGCATTTTCTCGAACAGGAAC 59.749 43.478 0.00 0.00 0.00 3.62
41 42 3.476552 ACTGCATTTTCTCGAACAGGAA 58.523 40.909 0.00 0.00 0.00 3.36
42 43 3.126001 ACTGCATTTTCTCGAACAGGA 57.874 42.857 0.00 0.00 0.00 3.86
43 44 5.551760 AATACTGCATTTTCTCGAACAGG 57.448 39.130 0.00 0.00 0.00 4.00
44 45 6.857964 ACAAAATACTGCATTTTCTCGAACAG 59.142 34.615 0.00 0.00 43.51 3.16
45 46 6.734137 ACAAAATACTGCATTTTCTCGAACA 58.266 32.000 0.00 0.00 43.51 3.18
46 47 7.623268 AACAAAATACTGCATTTTCTCGAAC 57.377 32.000 0.00 0.00 43.51 3.95
48 49 7.421599 TGAAACAAAATACTGCATTTTCTCGA 58.578 30.769 0.00 0.00 43.51 4.04
49 50 7.621832 TGAAACAAAATACTGCATTTTCTCG 57.378 32.000 0.00 0.00 43.51 4.04
50 51 9.415544 AGATGAAACAAAATACTGCATTTTCTC 57.584 29.630 0.00 0.00 43.51 2.87
51 52 9.768662 AAGATGAAACAAAATACTGCATTTTCT 57.231 25.926 0.00 0.00 43.51 2.52
53 54 9.545105 TGAAGATGAAACAAAATACTGCATTTT 57.455 25.926 0.00 0.00 45.72 1.82
54 55 9.545105 TTGAAGATGAAACAAAATACTGCATTT 57.455 25.926 0.00 0.00 38.54 2.32
57 58 8.358895 TGATTGAAGATGAAACAAAATACTGCA 58.641 29.630 0.00 0.00 0.00 4.41
58 59 8.642020 GTGATTGAAGATGAAACAAAATACTGC 58.358 33.333 0.00 0.00 0.00 4.40
60 61 9.903682 CAGTGATTGAAGATGAAACAAAATACT 57.096 29.630 0.00 0.00 0.00 2.12
61 62 9.683069 ACAGTGATTGAAGATGAAACAAAATAC 57.317 29.630 0.00 0.00 0.00 1.89
66 67 9.681692 CATTTACAGTGATTGAAGATGAAACAA 57.318 29.630 0.00 0.00 0.00 2.83
67 68 8.849168 ACATTTACAGTGATTGAAGATGAAACA 58.151 29.630 0.00 0.00 0.00 2.83
68 69 9.683069 AACATTTACAGTGATTGAAGATGAAAC 57.317 29.630 0.00 0.00 0.00 2.78
72 73 9.338291 CTCAAACATTTACAGTGATTGAAGATG 57.662 33.333 0.00 0.00 37.73 2.90
73 74 9.288576 TCTCAAACATTTACAGTGATTGAAGAT 57.711 29.630 0.00 0.00 37.73 2.40
80 81 9.825972 CGTATTTTCTCAAACATTTACAGTGAT 57.174 29.630 0.00 0.00 0.00 3.06
82 83 8.286800 TCCGTATTTTCTCAAACATTTACAGTG 58.713 33.333 0.00 0.00 0.00 3.66
83 84 8.385898 TCCGTATTTTCTCAAACATTTACAGT 57.614 30.769 0.00 0.00 0.00 3.55
84 85 9.840427 AATCCGTATTTTCTCAAACATTTACAG 57.160 29.630 0.00 0.00 0.00 2.74
85 86 9.619316 CAATCCGTATTTTCTCAAACATTTACA 57.381 29.630 0.00 0.00 0.00 2.41
86 87 9.834628 TCAATCCGTATTTTCTCAAACATTTAC 57.165 29.630 0.00 0.00 0.00 2.01
120 121 3.886505 ACGAAGTGCCCATAACTCAAAAA 59.113 39.130 0.00 0.00 42.51 1.94
122 123 3.134574 ACGAAGTGCCCATAACTCAAA 57.865 42.857 0.00 0.00 42.51 2.69
124 125 2.851263 AACGAAGTGCCCATAACTCA 57.149 45.000 0.00 0.00 45.00 3.41
125 126 3.002348 GCATAACGAAGTGCCCATAACTC 59.998 47.826 0.00 0.00 45.00 3.01
126 127 2.943033 GCATAACGAAGTGCCCATAACT 59.057 45.455 0.00 0.00 45.00 2.24
128 129 3.275617 AGCATAACGAAGTGCCCATAA 57.724 42.857 0.00 0.00 45.00 1.90
129 130 3.118408 AGAAGCATAACGAAGTGCCCATA 60.118 43.478 0.00 0.00 45.00 2.74
130 131 2.017049 GAAGCATAACGAAGTGCCCAT 58.983 47.619 0.00 0.00 45.00 4.00
132 133 1.398390 CAGAAGCATAACGAAGTGCCC 59.602 52.381 0.00 0.00 45.00 5.36
133 134 1.398390 CCAGAAGCATAACGAAGTGCC 59.602 52.381 0.00 0.00 45.00 5.01
134 135 1.398390 CCCAGAAGCATAACGAAGTGC 59.602 52.381 0.00 0.00 45.00 4.40
135 136 2.416547 CACCCAGAAGCATAACGAAGTG 59.583 50.000 0.00 0.00 45.00 3.16
137 138 2.009774 CCACCCAGAAGCATAACGAAG 58.990 52.381 0.00 0.00 0.00 3.79
138 139 1.626321 TCCACCCAGAAGCATAACGAA 59.374 47.619 0.00 0.00 0.00 3.85
139 140 1.271856 TCCACCCAGAAGCATAACGA 58.728 50.000 0.00 0.00 0.00 3.85
140 141 2.332063 ATCCACCCAGAAGCATAACG 57.668 50.000 0.00 0.00 0.00 3.18
141 142 3.620488 TGAATCCACCCAGAAGCATAAC 58.380 45.455 0.00 0.00 0.00 1.89
143 144 5.645056 TTATGAATCCACCCAGAAGCATA 57.355 39.130 0.00 0.00 0.00 3.14
144 145 4.524802 TTATGAATCCACCCAGAAGCAT 57.475 40.909 0.00 0.00 0.00 3.79
145 146 4.016444 GTTTATGAATCCACCCAGAAGCA 58.984 43.478 0.00 0.00 0.00 3.91
146 147 4.273318 AGTTTATGAATCCACCCAGAAGC 58.727 43.478 0.00 0.00 0.00 3.86
165 166 9.747898 TCAACTGTATTTGTCCCATAAATAGTT 57.252 29.630 0.00 0.00 31.47 2.24
166 167 9.747898 TTCAACTGTATTTGTCCCATAAATAGT 57.252 29.630 0.00 0.00 32.40 2.12
169 170 9.874205 CATTTCAACTGTATTTGTCCCATAAAT 57.126 29.630 0.00 0.00 0.00 1.40
170 171 7.816995 GCATTTCAACTGTATTTGTCCCATAAA 59.183 33.333 0.00 0.00 0.00 1.40
171 172 7.319646 GCATTTCAACTGTATTTGTCCCATAA 58.680 34.615 0.00 0.00 0.00 1.90
172 173 6.127479 GGCATTTCAACTGTATTTGTCCCATA 60.127 38.462 0.00 0.00 0.00 2.74
173 174 5.337491 GGCATTTCAACTGTATTTGTCCCAT 60.337 40.000 0.00 0.00 0.00 4.00
174 175 4.021544 GGCATTTCAACTGTATTTGTCCCA 60.022 41.667 0.00 0.00 0.00 4.37
175 176 4.021544 TGGCATTTCAACTGTATTTGTCCC 60.022 41.667 0.00 0.00 0.00 4.46
176 177 5.132897 TGGCATTTCAACTGTATTTGTCC 57.867 39.130 0.00 0.00 0.00 4.02
209 210 9.529325 GTGACACTGTAGCTTATATGTTCAATA 57.471 33.333 0.00 0.00 0.00 1.90
211 212 6.816640 GGTGACACTGTAGCTTATATGTTCAA 59.183 38.462 5.39 0.00 0.00 2.69
213 214 6.338146 TGGTGACACTGTAGCTTATATGTTC 58.662 40.000 5.39 0.00 33.40 3.18
214 215 6.294361 TGGTGACACTGTAGCTTATATGTT 57.706 37.500 5.39 0.00 33.40 2.71
215 216 5.932619 TGGTGACACTGTAGCTTATATGT 57.067 39.130 5.39 0.00 33.40 2.29
231 232 6.461110 AATGAGATGGAATGAAATGGTGAC 57.539 37.500 0.00 0.00 0.00 3.67
233 234 7.147863 TGGTTAATGAGATGGAATGAAATGGTG 60.148 37.037 0.00 0.00 0.00 4.17
234 235 6.896860 TGGTTAATGAGATGGAATGAAATGGT 59.103 34.615 0.00 0.00 0.00 3.55
236 237 9.090692 GTTTGGTTAATGAGATGGAATGAAATG 57.909 33.333 0.00 0.00 0.00 2.32
238 239 8.187913 TGTTTGGTTAATGAGATGGAATGAAA 57.812 30.769 0.00 0.00 0.00 2.69
239 240 7.773489 TGTTTGGTTAATGAGATGGAATGAA 57.227 32.000 0.00 0.00 0.00 2.57
240 241 7.959658 ATGTTTGGTTAATGAGATGGAATGA 57.040 32.000 0.00 0.00 0.00 2.57
241 242 8.252417 TCAATGTTTGGTTAATGAGATGGAATG 58.748 33.333 0.00 0.00 0.00 2.67
242 243 8.365060 TCAATGTTTGGTTAATGAGATGGAAT 57.635 30.769 0.00 0.00 0.00 3.01
243 244 7.773489 TCAATGTTTGGTTAATGAGATGGAA 57.227 32.000 0.00 0.00 0.00 3.53
244 245 7.773489 TTCAATGTTTGGTTAATGAGATGGA 57.227 32.000 0.00 0.00 0.00 3.41
245 246 8.875803 CATTTCAATGTTTGGTTAATGAGATGG 58.124 33.333 0.00 0.00 31.85 3.51
246 247 9.426837 ACATTTCAATGTTTGGTTAATGAGATG 57.573 29.630 0.00 0.00 46.95 2.90
263 264 5.418524 TGGAATGGAACGATGACATTTCAAT 59.581 36.000 0.00 0.00 37.21 2.57
264 265 4.764308 TGGAATGGAACGATGACATTTCAA 59.236 37.500 0.00 0.00 37.21 2.69
265 266 4.331108 TGGAATGGAACGATGACATTTCA 58.669 39.130 0.00 0.00 37.67 2.69
266 267 4.963276 TGGAATGGAACGATGACATTTC 57.037 40.909 0.00 0.00 35.17 2.17
267 268 5.195940 AGATGGAATGGAACGATGACATTT 58.804 37.500 0.00 0.00 35.17 2.32
268 269 4.785301 AGATGGAATGGAACGATGACATT 58.215 39.130 0.00 0.00 37.52 2.71
269 270 4.428294 AGATGGAATGGAACGATGACAT 57.572 40.909 0.00 0.00 0.00 3.06
271 272 5.578727 GCTATAGATGGAATGGAACGATGAC 59.421 44.000 3.21 0.00 0.00 3.06
272 273 5.337571 GGCTATAGATGGAATGGAACGATGA 60.338 44.000 3.21 0.00 0.00 2.92
273 274 4.872691 GGCTATAGATGGAATGGAACGATG 59.127 45.833 3.21 0.00 0.00 3.84
274 275 4.080863 GGGCTATAGATGGAATGGAACGAT 60.081 45.833 3.21 0.00 0.00 3.73
275 276 3.260884 GGGCTATAGATGGAATGGAACGA 59.739 47.826 3.21 0.00 0.00 3.85
276 277 3.261897 AGGGCTATAGATGGAATGGAACG 59.738 47.826 3.21 0.00 0.00 3.95
277 278 4.287067 TGAGGGCTATAGATGGAATGGAAC 59.713 45.833 3.21 0.00 0.00 3.62
279 280 4.146245 TGAGGGCTATAGATGGAATGGA 57.854 45.455 3.21 0.00 0.00 3.41
280 281 4.288105 AGTTGAGGGCTATAGATGGAATGG 59.712 45.833 3.21 0.00 0.00 3.16
281 282 5.495926 AGTTGAGGGCTATAGATGGAATG 57.504 43.478 3.21 0.00 0.00 2.67
282 283 7.072454 TGTTTAGTTGAGGGCTATAGATGGAAT 59.928 37.037 3.21 0.00 0.00 3.01
283 284 6.385759 TGTTTAGTTGAGGGCTATAGATGGAA 59.614 38.462 3.21 0.00 0.00 3.53
284 285 5.903010 TGTTTAGTTGAGGGCTATAGATGGA 59.097 40.000 3.21 0.00 0.00 3.41
287 288 8.543774 CCATATGTTTAGTTGAGGGCTATAGAT 58.456 37.037 3.21 0.00 0.00 1.98
291 292 6.101150 TGTCCATATGTTTAGTTGAGGGCTAT 59.899 38.462 1.24 0.00 0.00 2.97
292 293 5.427157 TGTCCATATGTTTAGTTGAGGGCTA 59.573 40.000 1.24 0.00 0.00 3.93
293 294 4.227300 TGTCCATATGTTTAGTTGAGGGCT 59.773 41.667 1.24 0.00 0.00 5.19
294 295 4.523083 TGTCCATATGTTTAGTTGAGGGC 58.477 43.478 1.24 0.00 0.00 5.19
295 296 7.312899 GTTTTGTCCATATGTTTAGTTGAGGG 58.687 38.462 1.24 0.00 0.00 4.30
296 297 7.312899 GGTTTTGTCCATATGTTTAGTTGAGG 58.687 38.462 1.24 0.00 0.00 3.86
297 298 7.021196 CGGTTTTGTCCATATGTTTAGTTGAG 58.979 38.462 1.24 0.00 0.00 3.02
298 299 6.711194 TCGGTTTTGTCCATATGTTTAGTTGA 59.289 34.615 1.24 0.00 0.00 3.18
299 300 6.799925 GTCGGTTTTGTCCATATGTTTAGTTG 59.200 38.462 1.24 0.00 0.00 3.16
300 301 6.072342 GGTCGGTTTTGTCCATATGTTTAGTT 60.072 38.462 1.24 0.00 0.00 2.24
303 304 4.701171 GGGTCGGTTTTGTCCATATGTTTA 59.299 41.667 1.24 0.00 0.00 2.01
305 306 3.086282 GGGTCGGTTTTGTCCATATGTT 58.914 45.455 1.24 0.00 0.00 2.71
306 307 2.040545 TGGGTCGGTTTTGTCCATATGT 59.959 45.455 1.24 0.00 0.00 2.29
307 308 2.717390 TGGGTCGGTTTTGTCCATATG 58.283 47.619 0.00 0.00 0.00 1.78
308 309 3.662759 ATGGGTCGGTTTTGTCCATAT 57.337 42.857 0.00 0.00 36.55 1.78
310 311 2.167662 GAATGGGTCGGTTTTGTCCAT 58.832 47.619 0.00 0.00 39.63 3.41
311 312 1.144093 AGAATGGGTCGGTTTTGTCCA 59.856 47.619 0.00 0.00 0.00 4.02
312 313 1.905637 AGAATGGGTCGGTTTTGTCC 58.094 50.000 0.00 0.00 0.00 4.02
313 314 4.698304 TCATTAGAATGGGTCGGTTTTGTC 59.302 41.667 2.52 0.00 37.03 3.18
314 315 4.658063 TCATTAGAATGGGTCGGTTTTGT 58.342 39.130 2.52 0.00 37.03 2.83
315 316 5.637006 TTCATTAGAATGGGTCGGTTTTG 57.363 39.130 2.52 0.00 37.03 2.44
316 317 6.350949 CCATTTCATTAGAATGGGTCGGTTTT 60.351 38.462 7.77 0.00 37.03 2.43
317 318 5.127031 CCATTTCATTAGAATGGGTCGGTTT 59.873 40.000 7.77 0.00 37.03 3.27
318 319 4.644685 CCATTTCATTAGAATGGGTCGGTT 59.355 41.667 7.77 0.00 37.03 4.44
319 320 4.080015 TCCATTTCATTAGAATGGGTCGGT 60.080 41.667 14.03 0.00 37.03 4.69
320 321 4.460263 TCCATTTCATTAGAATGGGTCGG 58.540 43.478 14.03 0.31 37.03 4.79
321 322 5.221048 GGTTCCATTTCATTAGAATGGGTCG 60.221 44.000 14.03 0.00 37.03 4.79
322 323 5.656416 TGGTTCCATTTCATTAGAATGGGTC 59.344 40.000 14.03 8.52 37.03 4.46
323 324 5.588845 TGGTTCCATTTCATTAGAATGGGT 58.411 37.500 14.03 0.00 37.03 4.51
324 325 6.324512 TCATGGTTCCATTTCATTAGAATGGG 59.675 38.462 14.03 2.73 37.03 4.00
327 328 7.959658 TGTCATGGTTCCATTTCATTAGAAT 57.040 32.000 1.11 0.00 32.89 2.40
329 330 7.959658 AATGTCATGGTTCCATTTCATTAGA 57.040 32.000 19.50 5.89 31.75 2.10
330 331 8.685427 TGTAATGTCATGGTTCCATTTCATTAG 58.315 33.333 22.91 7.33 34.36 1.73
331 332 8.586879 TGTAATGTCATGGTTCCATTTCATTA 57.413 30.769 20.83 20.83 33.57 1.90
332 333 7.479352 TGTAATGTCATGGTTCCATTTCATT 57.521 32.000 22.05 22.05 34.65 2.57
335 336 8.034215 TGAAATGTAATGTCATGGTTCCATTTC 58.966 33.333 18.84 18.84 35.09 2.17
336 337 7.818930 GTGAAATGTAATGTCATGGTTCCATTT 59.181 33.333 1.11 8.51 43.73 2.32
337 338 7.178983 AGTGAAATGTAATGTCATGGTTCCATT 59.821 33.333 1.11 0.00 43.73 3.16
340 341 6.515272 AGTGAAATGTAATGTCATGGTTCC 57.485 37.500 0.00 0.00 43.73 3.62
341 342 6.808212 CCAAGTGAAATGTAATGTCATGGTTC 59.192 38.462 0.00 0.00 43.73 3.62
343 344 5.774690 ACCAAGTGAAATGTAATGTCATGGT 59.225 36.000 0.00 1.42 45.02 3.55
344 345 6.271488 ACCAAGTGAAATGTAATGTCATGG 57.729 37.500 0.00 0.41 43.73 3.66
345 346 6.808212 GGAACCAAGTGAAATGTAATGTCATG 59.192 38.462 0.00 0.00 43.73 3.07
346 347 6.924111 GGAACCAAGTGAAATGTAATGTCAT 58.076 36.000 0.00 0.00 43.73 3.06
347 348 6.325919 GGAACCAAGTGAAATGTAATGTCA 57.674 37.500 0.00 0.00 38.53 3.58
366 367 1.958579 GGGTGTGTTTGGTTAGGGAAC 59.041 52.381 0.00 0.00 34.56 3.62
368 369 1.525175 AGGGTGTGTTTGGTTAGGGA 58.475 50.000 0.00 0.00 0.00 4.20
369 370 2.375014 AAGGGTGTGTTTGGTTAGGG 57.625 50.000 0.00 0.00 0.00 3.53
370 371 4.094830 AGTAAGGGTGTGTTTGGTTAGG 57.905 45.455 0.00 0.00 0.00 2.69
371 372 6.293698 AGTTAGTAAGGGTGTGTTTGGTTAG 58.706 40.000 0.00 0.00 0.00 2.34
372 373 6.251255 AGTTAGTAAGGGTGTGTTTGGTTA 57.749 37.500 0.00 0.00 0.00 2.85
373 374 5.120054 AGTTAGTAAGGGTGTGTTTGGTT 57.880 39.130 0.00 0.00 0.00 3.67
375 376 5.008316 GTGAAGTTAGTAAGGGTGTGTTTGG 59.992 44.000 0.00 0.00 0.00 3.28
377 378 5.997843 AGTGAAGTTAGTAAGGGTGTGTTT 58.002 37.500 0.00 0.00 0.00 2.83
378 379 5.625568 AGTGAAGTTAGTAAGGGTGTGTT 57.374 39.130 0.00 0.00 0.00 3.32
379 380 5.625568 AAGTGAAGTTAGTAAGGGTGTGT 57.374 39.130 0.00 0.00 0.00 3.72
380 381 6.530534 CGATAAGTGAAGTTAGTAAGGGTGTG 59.469 42.308 0.00 0.00 0.00 3.82
381 382 6.435277 TCGATAAGTGAAGTTAGTAAGGGTGT 59.565 38.462 0.00 0.00 0.00 4.16
382 383 6.750963 GTCGATAAGTGAAGTTAGTAAGGGTG 59.249 42.308 0.00 0.00 0.00 4.61
383 384 6.404074 CGTCGATAAGTGAAGTTAGTAAGGGT 60.404 42.308 0.00 0.00 0.00 4.34
385 386 6.468319 CACGTCGATAAGTGAAGTTAGTAAGG 59.532 42.308 11.57 0.00 40.56 2.69
386 387 6.021626 GCACGTCGATAAGTGAAGTTAGTAAG 60.022 42.308 18.48 0.00 40.56 2.34
387 388 5.796935 GCACGTCGATAAGTGAAGTTAGTAA 59.203 40.000 18.48 0.00 40.56 2.24
389 390 4.164294 GCACGTCGATAAGTGAAGTTAGT 58.836 43.478 18.48 0.00 40.56 2.24
390 391 3.237660 CGCACGTCGATAAGTGAAGTTAG 59.762 47.826 18.48 3.21 40.56 2.34
391 392 3.165890 CGCACGTCGATAAGTGAAGTTA 58.834 45.455 18.48 0.00 40.56 2.24
393 394 1.614385 CGCACGTCGATAAGTGAAGT 58.386 50.000 18.48 0.00 40.56 3.01
394 395 0.294887 GCGCACGTCGATAAGTGAAG 59.705 55.000 18.48 13.15 40.56 3.02
395 396 1.074319 GGCGCACGTCGATAAGTGAA 61.074 55.000 10.83 0.00 40.56 3.18
396 397 1.515519 GGCGCACGTCGATAAGTGA 60.516 57.895 10.83 0.00 40.56 3.41
410 411 4.807039 TTCTAGTTCGGGCGGCGC 62.807 66.667 26.17 26.17 0.00 6.53
411 412 2.125832 TTTCTAGTTCGGGCGGCG 60.126 61.111 0.51 0.51 0.00 6.46
412 413 2.104859 GGTTTCTAGTTCGGGCGGC 61.105 63.158 0.00 0.00 0.00 6.53
415 416 2.199236 CATACGGTTTCTAGTTCGGGC 58.801 52.381 0.00 0.00 0.00 6.13
416 417 2.199236 GCATACGGTTTCTAGTTCGGG 58.801 52.381 0.00 0.00 0.00 5.14
417 418 1.850441 CGCATACGGTTTCTAGTTCGG 59.150 52.381 0.00 0.00 34.97 4.30
418 419 2.278094 CACGCATACGGTTTCTAGTTCG 59.722 50.000 0.00 0.00 46.04 3.95
419 420 2.028883 GCACGCATACGGTTTCTAGTTC 59.971 50.000 0.00 0.00 46.04 3.01
420 421 1.997606 GCACGCATACGGTTTCTAGTT 59.002 47.619 0.00 0.00 46.04 2.24
421 422 1.067425 TGCACGCATACGGTTTCTAGT 60.067 47.619 0.00 0.00 46.04 2.57
423 424 2.081725 TTGCACGCATACGGTTTCTA 57.918 45.000 0.00 0.00 46.04 2.10
424 425 1.231221 TTTGCACGCATACGGTTTCT 58.769 45.000 0.00 0.00 46.04 2.52
425 426 2.039327 TTTTGCACGCATACGGTTTC 57.961 45.000 0.00 0.00 46.04 2.78
426 427 2.493713 TTTTTGCACGCATACGGTTT 57.506 40.000 0.00 0.00 46.04 3.27
448 449 1.925946 GCGCACATGCTTCGAGTTTTT 60.926 47.619 0.30 0.00 39.32 1.94
450 451 1.207593 GCGCACATGCTTCGAGTTT 59.792 52.632 0.30 0.00 39.32 2.66
451 452 0.389817 TAGCGCACATGCTTCGAGTT 60.390 50.000 11.47 0.00 44.46 3.01
453 454 0.933097 ATTAGCGCACATGCTTCGAG 59.067 50.000 11.47 0.00 44.46 4.04
454 455 0.930310 GATTAGCGCACATGCTTCGA 59.070 50.000 11.47 0.00 44.46 3.71
455 456 0.933097 AGATTAGCGCACATGCTTCG 59.067 50.000 11.47 0.00 44.46 3.79
457 458 5.728471 AGATATAGATTAGCGCACATGCTT 58.272 37.500 11.47 0.00 44.46 3.91
459 460 6.754209 AGTTAGATATAGATTAGCGCACATGC 59.246 38.462 11.47 0.00 37.78 4.06
460 461 9.444534 CTAGTTAGATATAGATTAGCGCACATG 57.555 37.037 11.47 0.00 0.00 3.21
461 462 8.132362 GCTAGTTAGATATAGATTAGCGCACAT 58.868 37.037 11.47 0.00 0.00 3.21
463 464 7.699566 AGCTAGTTAGATATAGATTAGCGCAC 58.300 38.462 11.47 0.00 37.64 5.34
465 466 8.013378 GCTAGCTAGTTAGATATAGATTAGCGC 58.987 40.741 21.62 0.00 37.64 5.92
466 467 8.500773 GGCTAGCTAGTTAGATATAGATTAGCG 58.499 40.741 21.62 0.00 37.64 4.26
467 468 8.789762 GGGCTAGCTAGTTAGATATAGATTAGC 58.210 40.741 21.62 3.69 35.35 3.09
471 472 9.142014 CAATGGGCTAGCTAGTTAGATATAGAT 57.858 37.037 21.62 0.00 0.00 1.98
472 473 7.561722 CCAATGGGCTAGCTAGTTAGATATAGA 59.438 40.741 21.62 0.00 0.00 1.98
473 474 7.343316 ACCAATGGGCTAGCTAGTTAGATATAG 59.657 40.741 21.62 6.67 37.90 1.31
474 475 7.124298 CACCAATGGGCTAGCTAGTTAGATATA 59.876 40.741 21.62 1.18 37.90 0.86
475 476 6.026186 ACCAATGGGCTAGCTAGTTAGATAT 58.974 40.000 21.62 5.15 37.90 1.63
476 477 5.246203 CACCAATGGGCTAGCTAGTTAGATA 59.754 44.000 21.62 3.13 37.90 1.98
477 478 4.040952 CACCAATGGGCTAGCTAGTTAGAT 59.959 45.833 21.62 6.73 37.90 1.98
478 479 3.388024 CACCAATGGGCTAGCTAGTTAGA 59.612 47.826 21.62 4.69 37.90 2.10
479 480 3.388024 TCACCAATGGGCTAGCTAGTTAG 59.612 47.826 21.62 9.14 37.90 2.34
480 481 3.380393 TCACCAATGGGCTAGCTAGTTA 58.620 45.455 21.62 9.08 37.90 2.24
481 482 2.196595 TCACCAATGGGCTAGCTAGTT 58.803 47.619 21.62 5.60 37.90 2.24
482 483 1.879575 TCACCAATGGGCTAGCTAGT 58.120 50.000 21.62 0.31 37.90 2.57
483 484 3.118261 TCTTTCACCAATGGGCTAGCTAG 60.118 47.826 16.84 16.84 37.90 3.42
484 485 2.843730 TCTTTCACCAATGGGCTAGCTA 59.156 45.455 15.72 4.59 37.90 3.32
485 486 1.635487 TCTTTCACCAATGGGCTAGCT 59.365 47.619 15.72 0.00 37.90 3.32
487 488 2.648059 CCTCTTTCACCAATGGGCTAG 58.352 52.381 3.55 0.00 37.90 3.42
488 489 1.340991 GCCTCTTTCACCAATGGGCTA 60.341 52.381 3.55 0.00 37.90 3.93
489 490 0.613012 GCCTCTTTCACCAATGGGCT 60.613 55.000 3.55 0.00 37.90 5.19
490 491 1.893062 GCCTCTTTCACCAATGGGC 59.107 57.895 3.55 0.00 37.90 5.36
491 492 1.315257 CCGCCTCTTTCACCAATGGG 61.315 60.000 3.55 0.00 41.29 4.00
492 493 1.937546 GCCGCCTCTTTCACCAATGG 61.938 60.000 0.00 0.00 0.00 3.16
494 495 2.040544 CGCCGCCTCTTTCACCAAT 61.041 57.895 0.00 0.00 0.00 3.16
496 497 2.102109 TTACGCCGCCTCTTTCACCA 62.102 55.000 0.00 0.00 0.00 4.17
498 499 1.084289 AATTACGCCGCCTCTTTCAC 58.916 50.000 0.00 0.00 0.00 3.18
499 500 1.735571 GAAATTACGCCGCCTCTTTCA 59.264 47.619 0.00 0.00 0.00 2.69
500 501 2.007608 AGAAATTACGCCGCCTCTTTC 58.992 47.619 0.00 0.00 0.00 2.62
502 503 2.109425 AAGAAATTACGCCGCCTCTT 57.891 45.000 0.00 0.00 0.00 2.85
504 505 2.913777 AAAAGAAATTACGCCGCCTC 57.086 45.000 0.00 0.00 0.00 4.70
505 506 2.413634 CGAAAAAGAAATTACGCCGCCT 60.414 45.455 0.00 0.00 0.00 5.52
508 509 3.838550 CACTCGAAAAAGAAATTACGCCG 59.161 43.478 0.00 0.00 0.00 6.46
509 510 4.779987 ACACTCGAAAAAGAAATTACGCC 58.220 39.130 0.00 0.00 0.00 5.68
510 511 5.437263 TGACACTCGAAAAAGAAATTACGC 58.563 37.500 0.00 0.00 0.00 4.42
511 512 7.342194 TCTTGACACTCGAAAAAGAAATTACG 58.658 34.615 0.00 0.00 0.00 3.18
512 513 7.798982 CCTCTTGACACTCGAAAAAGAAATTAC 59.201 37.037 0.00 0.00 0.00 1.89
514 515 6.729187 CCTCTTGACACTCGAAAAAGAAATT 58.271 36.000 0.00 0.00 0.00 1.82
515 516 5.278022 GCCTCTTGACACTCGAAAAAGAAAT 60.278 40.000 0.00 0.00 0.00 2.17
518 519 3.131396 GCCTCTTGACACTCGAAAAAGA 58.869 45.455 0.00 0.00 0.00 2.52
519 520 2.096713 CGCCTCTTGACACTCGAAAAAG 60.097 50.000 0.00 0.00 0.00 2.27
520 521 1.864711 CGCCTCTTGACACTCGAAAAA 59.135 47.619 0.00 0.00 0.00 1.94
521 522 1.497991 CGCCTCTTGACACTCGAAAA 58.502 50.000 0.00 0.00 0.00 2.29
522 523 0.319555 CCGCCTCTTGACACTCGAAA 60.320 55.000 0.00 0.00 0.00 3.46
523 524 1.289066 CCGCCTCTTGACACTCGAA 59.711 57.895 0.00 0.00 0.00 3.71
524 525 2.962569 CCGCCTCTTGACACTCGA 59.037 61.111 0.00 0.00 0.00 4.04
525 526 2.771763 AAGCCGCCTCTTGACACTCG 62.772 60.000 0.00 0.00 0.00 4.18
526 527 0.603975 AAAGCCGCCTCTTGACACTC 60.604 55.000 0.00 0.00 0.00 3.51
527 528 0.179018 AAAAGCCGCCTCTTGACACT 60.179 50.000 0.00 0.00 0.00 3.55
528 529 1.519408 TAAAAGCCGCCTCTTGACAC 58.481 50.000 0.00 0.00 0.00 3.67
529 530 2.264005 TTAAAAGCCGCCTCTTGACA 57.736 45.000 0.00 0.00 0.00 3.58
530 531 3.850122 AATTAAAAGCCGCCTCTTGAC 57.150 42.857 0.00 0.00 0.00 3.18
531 532 3.572255 ACAAATTAAAAGCCGCCTCTTGA 59.428 39.130 0.00 0.00 0.00 3.02
556 561 6.529829 GTGTGCACAATGAACTGACTTTTTAA 59.470 34.615 23.59 0.00 0.00 1.52
557 562 6.033341 GTGTGCACAATGAACTGACTTTTTA 58.967 36.000 23.59 0.00 0.00 1.52
564 569 1.330213 CACGTGTGCACAATGAACTGA 59.670 47.619 23.59 0.00 0.00 3.41
565 570 1.745566 CACGTGTGCACAATGAACTG 58.254 50.000 23.59 7.96 0.00 3.16
582 587 2.342650 ATGGATTGGGTGCACGCAC 61.343 57.895 33.41 23.05 45.49 5.34
610 615 1.728490 GGATTTTGCTAGGCCTGCGG 61.728 60.000 17.99 6.68 0.00 5.69
611 616 1.031571 TGGATTTTGCTAGGCCTGCG 61.032 55.000 17.99 7.61 0.00 5.18
612 617 0.457443 GTGGATTTTGCTAGGCCTGC 59.543 55.000 17.99 17.54 0.00 4.85
613 618 1.106285 GGTGGATTTTGCTAGGCCTG 58.894 55.000 17.99 6.68 0.00 4.85
615 620 0.817654 GTGGTGGATTTTGCTAGGCC 59.182 55.000 0.00 0.00 0.00 5.19
617 622 2.493278 CCTTGTGGTGGATTTTGCTAGG 59.507 50.000 0.00 0.00 0.00 3.02
618 623 3.420893 TCCTTGTGGTGGATTTTGCTAG 58.579 45.455 0.00 0.00 34.23 3.42
686 3821 2.871022 AGCTACTACGTACTGGTCGATG 59.129 50.000 0.00 0.00 0.00 3.84
750 3892 2.743928 GGACTCGGTTGCTGCTGG 60.744 66.667 0.00 0.00 0.00 4.85
765 3907 3.829226 AGGATAGGGTCGCCGGGA 61.829 66.667 2.18 0.00 0.00 5.14
842 3991 1.969589 GTTCAACCAATCGGCCGGT 60.970 57.895 27.83 18.03 36.98 5.28
896 4061 6.936900 AGCATATCAAATCGGTTTGTAGCTAT 59.063 34.615 20.07 8.96 44.03 2.97
1023 4228 3.681594 GCTAGCAACCTGTACCTATGCAA 60.682 47.826 10.63 0.00 39.42 4.08
1024 4229 2.158957 GCTAGCAACCTGTACCTATGCA 60.159 50.000 10.63 0.00 39.42 3.96
1026 4231 5.531122 TTAGCTAGCAACCTGTACCTATG 57.469 43.478 18.83 0.00 0.00 2.23
1115 4354 0.869454 GCAGATGCGGACGAGAGAAG 60.869 60.000 0.00 0.00 0.00 2.85
1203 4445 2.428403 CAAAACGCCCTTTCGCCG 60.428 61.111 0.00 0.00 0.00 6.46
1209 4454 1.247567 CATCCTGACAAAACGCCCTT 58.752 50.000 0.00 0.00 0.00 3.95
1382 4630 2.185004 TGCTACCAAGACAAGAAGGC 57.815 50.000 0.00 0.00 0.00 4.35
1383 4631 4.821805 TCTTTTGCTACCAAGACAAGAAGG 59.178 41.667 0.00 0.00 27.88 3.46
1432 4744 3.737182 CGACGACGTGCACTGTAG 58.263 61.111 16.19 16.05 34.56 2.74
1450 4762 8.307483 AGTACACTAGTAGTAACAAGTACTCGA 58.693 37.037 18.09 0.00 42.37 4.04
1451 4763 8.379161 CAGTACACTAGTAGTAACAAGTACTCG 58.621 40.741 19.81 14.35 42.37 4.18
1556 4893 7.903995 AAACAATGACAAAATGCGGATAAAT 57.096 28.000 0.00 0.00 0.00 1.40
1582 4919 6.526325 CGATCCAATAAAATGAAAACTTGCGA 59.474 34.615 0.00 0.00 0.00 5.10
1584 4921 7.542130 AGACGATCCAATAAAATGAAAACTTGC 59.458 33.333 0.00 0.00 0.00 4.01
1660 4998 6.018469 AGGGGAATGAAAGATTTGTTGATCA 58.982 36.000 0.00 0.00 0.00 2.92
1670 5008 1.009997 TGGCCAGGGGAATGAAAGAT 58.990 50.000 0.00 0.00 0.00 2.40
1672 5013 0.897621 GTTGGCCAGGGGAATGAAAG 59.102 55.000 5.11 0.00 0.00 2.62
1724 5321 4.949856 GGAGGATGCAATTTTACCAGAGAA 59.050 41.667 0.00 0.00 0.00 2.87
1729 5326 3.464720 TGGGAGGATGCAATTTTACCA 57.535 42.857 0.00 0.00 0.00 3.25
1753 5350 3.006112 TGACTCCTCTCTCGCTATGTT 57.994 47.619 0.00 0.00 0.00 2.71
1837 5434 1.285950 GACGGTCAAAAGCAAGGGC 59.714 57.895 2.62 0.00 41.61 5.19
1842 5439 4.580868 TGGTATATTGACGGTCAAAAGCA 58.419 39.130 25.64 23.23 40.12 3.91
1845 5442 7.557724 TGTAGATGGTATATTGACGGTCAAAA 58.442 34.615 25.64 12.61 40.12 2.44
1859 5456 2.373169 CACCCCTGCATGTAGATGGTAT 59.627 50.000 19.33 2.06 0.00 2.73
1874 5471 0.695462 TGATGCTGATAGCCACCCCT 60.695 55.000 0.00 0.00 41.51 4.79
1886 5483 3.784511 AGGGTTCCATCTATGATGCTG 57.215 47.619 2.30 0.00 0.00 4.41
1888 5485 4.457257 GCTAAAGGGTTCCATCTATGATGC 59.543 45.833 2.30 0.00 0.00 3.91
1889 5486 5.624159 TGCTAAAGGGTTCCATCTATGATG 58.376 41.667 0.92 0.92 0.00 3.07
1891 5488 5.191722 ACTTGCTAAAGGGTTCCATCTATGA 59.808 40.000 0.00 0.00 37.76 2.15
1892 5489 5.440610 ACTTGCTAAAGGGTTCCATCTATG 58.559 41.667 0.00 0.00 37.76 2.23
1900 5500 6.444633 GTTCCTTAAACTTGCTAAAGGGTTC 58.555 40.000 0.00 0.00 39.21 3.62
1949 5850 0.514255 CATCGCTCATTATGGCCGTG 59.486 55.000 8.05 0.00 0.00 4.94
1951 5852 1.499056 GCATCGCTCATTATGGCCG 59.501 57.895 0.00 0.00 0.00 6.13
1958 5859 2.158769 TGGTAGATTGGCATCGCTCATT 60.159 45.455 0.00 0.00 34.17 2.57
1959 5860 1.417517 TGGTAGATTGGCATCGCTCAT 59.582 47.619 0.00 0.00 34.17 2.90
1960 5861 0.829990 TGGTAGATTGGCATCGCTCA 59.170 50.000 0.00 0.00 34.17 4.26
1982 5895 7.277760 GCACATGGCGATAGATAATAATGTGTA 59.722 37.037 12.46 0.00 43.41 2.90
2000 5913 0.039617 TTTGTACGCAAGCACATGGC 60.040 50.000 0.00 0.00 44.42 4.40
2001 5914 1.266718 AGTTTGTACGCAAGCACATGG 59.733 47.619 0.00 0.00 44.42 3.66
2023 7506 7.541783 CCCTCAAACATATTAACATTGTGTGTG 59.458 37.037 0.00 0.00 41.14 3.82
2024 7507 7.309744 CCCCTCAAACATATTAACATTGTGTGT 60.310 37.037 0.00 0.00 44.84 3.72
2025 7508 7.035004 CCCCTCAAACATATTAACATTGTGTG 58.965 38.462 0.00 0.00 31.21 3.82
2047 7530 0.397957 AGTGTTGGTTGGTTTCCCCC 60.398 55.000 0.00 0.00 0.00 5.40
2056 7539 4.134563 ACCTAGCAAGTTAGTGTTGGTTG 58.865 43.478 0.00 0.00 36.94 3.77
2075 7558 1.477295 GTGACCGCTAGCTTTCTACCT 59.523 52.381 13.93 0.00 0.00 3.08
2090 7573 8.624776 CCAATAATTAGATTCCAGAAAGTGACC 58.375 37.037 0.00 0.00 0.00 4.02
2092 7575 8.336235 ACCCAATAATTAGATTCCAGAAAGTGA 58.664 33.333 0.00 0.00 0.00 3.41
2109 7592 4.527816 AGTGTGCATGAACAACCCAATAAT 59.472 37.500 8.49 0.00 0.00 1.28
2115 7598 1.408702 ACAAGTGTGCATGAACAACCC 59.591 47.619 8.49 0.00 0.00 4.11
2124 7607 2.183478 TTCGATCCACAAGTGTGCAT 57.817 45.000 5.89 0.00 44.34 3.96
2130 7613 5.126384 TGTTTTCCTTTTTCGATCCACAAGT 59.874 36.000 0.00 0.00 0.00 3.16
2138 7621 5.011023 AGGAGCAATGTTTTCCTTTTTCGAT 59.989 36.000 0.00 0.00 38.13 3.59
2139 7622 4.340950 AGGAGCAATGTTTTCCTTTTTCGA 59.659 37.500 0.00 0.00 38.13 3.71
2161 7644 6.821160 GGTTTCCTAGATTTGAGAAAGGAGAG 59.179 42.308 0.00 0.00 37.63 3.20
2167 7650 7.461749 ACTCATGGTTTCCTAGATTTGAGAAA 58.538 34.615 0.00 0.00 34.78 2.52
2170 7653 6.656693 ACAACTCATGGTTTCCTAGATTTGAG 59.343 38.462 13.19 0.00 35.74 3.02
2171 7654 6.542821 ACAACTCATGGTTTCCTAGATTTGA 58.457 36.000 13.19 0.00 35.74 2.69
2173 7656 7.918076 TCTACAACTCATGGTTTCCTAGATTT 58.082 34.615 0.00 0.00 35.74 2.17
2176 7659 6.928348 TTCTACAACTCATGGTTTCCTAGA 57.072 37.500 0.00 0.00 35.74 2.43
2177 7660 7.094762 GGTTTTCTACAACTCATGGTTTCCTAG 60.095 40.741 0.00 0.00 35.74 3.02
2179 7662 5.535030 GGTTTTCTACAACTCATGGTTTCCT 59.465 40.000 0.00 0.00 35.74 3.36
2181 7665 5.535030 AGGGTTTTCTACAACTCATGGTTTC 59.465 40.000 0.00 0.00 35.74 2.78
2187 7671 4.993705 TGGAGGGTTTTCTACAACTCAT 57.006 40.909 0.00 0.00 35.30 2.90
2188 7672 4.781775 TTGGAGGGTTTTCTACAACTCA 57.218 40.909 0.00 0.00 33.02 3.41
2189 7673 5.221185 GGTTTTGGAGGGTTTTCTACAACTC 60.221 44.000 0.00 0.00 37.32 3.01
2194 7678 4.212716 AGTGGTTTTGGAGGGTTTTCTAC 58.787 43.478 0.00 0.00 0.00 2.59
2196 7680 3.398318 AGTGGTTTTGGAGGGTTTTCT 57.602 42.857 0.00 0.00 0.00 2.52
2202 7693 4.687901 AATTGAAAGTGGTTTTGGAGGG 57.312 40.909 0.00 0.00 0.00 4.30
2224 7716 7.839680 ATTATTTCGAAAGCCCATCCTTATT 57.160 32.000 16.80 0.00 0.00 1.40
2284 7782 9.463443 GAAAGCTAGCACTAAAAATTCTGAAAA 57.537 29.630 18.83 0.00 0.00 2.29
2288 7786 8.078596 AGTTGAAAGCTAGCACTAAAAATTCTG 58.921 33.333 18.83 0.00 0.00 3.02
2317 7815 2.553685 GGGGTTGACACCGGAATTAGTT 60.554 50.000 9.46 0.00 45.39 2.24
2320 7818 0.328926 GGGGGTTGACACCGGAATTA 59.671 55.000 9.46 0.00 45.39 1.40
2323 7821 2.773053 TGGGGGTTGACACCGGAA 60.773 61.111 9.46 0.00 45.39 4.30
2331 7829 3.561313 GCACTAGAATTTCTGGGGGTTGA 60.561 47.826 13.22 0.00 28.04 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.