>input_sequence_82036
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--------------------------------------------AGCCGCAAGCATCGAGGCGTTGCTTGCAT-------
------------------------AGGTACA---GGTTGCTAGCTAAGCTTGCATGCGCATGGCCAAGGCTCGCGTGCTC
CGCTGTGCGGTGCTGGTGGTGTGCGCGCTCCTACTTCTCTCGTCCGCATCTGCGGCGGCCGAGGCGGCTGGCCGGCAAAG
GGGTCATGGGAGAGAGGCCAC---GGCGCCGGCAGCGATGGCAACGGCGA---AAGGGCGTTTTGTCAGGATGGTGCTGC
GGGAGGAGATGCTTCAGGCGAACGGCCAGGGTGGCATTGGCGAGTCTAAGAGGACCAGTCCGGGCGGCCCAGACCCGCAG
CATCATTAGTT---GATGTTGGTTCACCGCCTGTCACGTTGCGTGCATTGAGCTTTCATGCAATAAA-------------
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----------------------------------------------------------------------
>chr1A_1_TraesCS1A01G394700
CTGGCCCTCGATGCGGTCTTCGGTTCGCTAGGAGGAGCAAGTTCCTGTTCGAGAAAATGCAGTATTTTGTTTCATCTTCA
ATCACTGTAAATGTTTGAGAAAATACGGATTGAAATATATTTTTTGAGTTATGGGCACTTCGTTATGCTTCTGGGTGGAT
TCATAAACTATTTATGGGACAAATACAGTTGAAATGCCATATAATTTCTTATTGAACATATAAGCTACAGTGTCACCATT
TCATTCCATCTCATTAACCAAACATTGAAATGTCATCGTTCCATTCCATCTATAGCCCTCAACTAAACATATGGACAAAA
CCGACCCATTCTAATGAAATGGAACCATGACATTACATTTCACTTGGTTCCCTAACCAAACACACCCTTACTAACTTCAC
TTATCGACGTGCGCCGCCCGAACTAGAAACCGTATGCGTGCAAAAAAAAAAAACTCGAAGCATGTGCGCTAATCTATATC
TAACTAGCTAGCCCATTGGTGAAAGAGGCGGCGTAATTTCTTTTTCGAGTGTCAAGAGGCGGCTTTT----AATTTGTCG
TTAAAAAGTCAGTTCATTGTGCACACGTGCGTGCACCCAATCCATGCATGCATGCCGCAGGCC-----------------
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-------------------------------------------------------TAGCAAAATCCACCACAAGGAGTGC
ATATGTGCAGC------------------CCACGTACGTACGCATGCAGTATGCTTTGTACATCGACCAGTACGTAGTAG
CTACGTAC----TCCATTACCGGGATCGACTTTTACTTGTTAATC-T--TGCCAGCAGCAACCGAGTCCCGGCGACCCTA
TCCTG----CCGGGCGCCAACTCGGATCGAGTTT---GCCGGCCGGCCAGCCGTGTTATCGCACGCCGGAACCGGCCGAT
TGGT-TGAACCACGTGGAAAGGGCACGGA---------------ACAACGCAGAAACGACATAGCTACAAACCGATTTGA
TATGCTCTATCTTG----CCTGTGCACGT----CGCTCTAGTG---CAC-----------------------------AG
CGCGACGCCTATATAAACCAGCCACACCTGCAGCTCAAAATGGCAGCCGCAAGCATCGAGGCGTTGCTTGCAT-------
------------------------AGGTACA---GGTTGCTAGCTAAGCTTGCATGCGCATGGCCAAGGCTCGCGTGCTC
CGCTGTGCGGTGCTGGTGGTGTGCGCGCTCCTACTTCTCTCGTCCGCATCTGCGGCGGCCGAGGCGGCTGGCCGGCAAAG
GGGTCATGGGAGAGAGGCCAC---GGCGCCGGCAGCGATGGCAACGGCGA---AAGGGCGTTTTGTCAGGATGGTGCTGC
GGGAGGAGATGCTTCAGGCGAACGGCCAGGGTGGCATTGGCGAGTCTAAGAGGACCAGTCCGGGCGGCCCAGACCCGCAG
CATCATTAGTT---GATGTTGGTTCACCGCCTGTCACGTTGCGTGCATTGAGCTTTCATGCAATAAATTGCC-T------
---------------------------TCTTGT------------------------CTTGGTAGCAAAAGAGATTTTTT
TTTTCACAAGC------ATATGTCTACAGTGCACGTCGTCGTC------------------GAGTACTTGTTACTACTAG
TGTACTGCTACGTTACCACAGAAGTAGCATGTGTGTGGAACAGGT------TATATGTTGTCACTTGTTTTTCAGAATGA
TAAA-TTTTAACATTTATCCGCATTTTGTCATTGTTTTTCGCAAGTTTTCATTTTATTGGATCGTCTACCCTATGTGTCC
CGAATTTCTTT-TAGTCTCTACCACATTCTAATATTTTGATCAACAAA---TCTTTCATTCCCCTGGCCAACTTATACAT
CTTTAGAATACCAATA----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------TTTTAGTTTTCTCTGGTAAAATTGCATCCTCCCAAACAACATAGCGAG
AGAGGAGTCATGTCATTAAACCCCTAGCCCCTGGGTAAATCATCAACCTTTTTTATTTATAATACCATCGGTTGCCCTTG
CTTTTGACCGTCAATATACCATCTACATGCAGGGGTGGCTATCAGCATCAT---AGATGGAACCCTTTAGCA--------
--------------------------------------------------------------------------------
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-----------------------------------------------------AGTTTAAGGAACCATATTGGTACACTT
CCTGAGTTTCACGGCCATAATGAGCGATGCCAAT------------CTACCATGTACACATTATTATCTATCGC------
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--------------------------------------------CATGTGCTTGCGTACAAACTTCACACACAATGTTAA
TATGTTTGAGGGGGAAACCAACCAACACTAACTTGCTAGGTAGAAAGCTAGCGGTCACTTTCTGGAATCTAATTATTGGG
TTGTTCATGCACACTTGTGGATCGAAAAAGGAAAACATTGCTCCTCTCCTTTCTCAAATCTA-GGAAACCATGAGTTGTA
G-------AAAACCCTCCAAAACCACTTTC-AATTAATAAGGATGGGCTTTCGAAATAATATTTAAAGTTGTCAGAAG--
----TTTCAAAATTAAGATAATTTTCAGAATTTTTAGTGCTAGCTTTCAACTTTAACTAATTCCGGTGTCAACCCCCAGA
AATTCTAGTGCTCTCTTTAAAAAA-ACATGCCAACAGA------------------------------------------
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----------------------------------------------------------------------
>chr1B_528
AGTGT---------------------------------------------------------------------------
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-----------------------------------------------------AAGAGGCGGCCCTCGCTAAATTTGTCG
GCAAAAAGATGGCTCATT---CACACATGCATGTACCCAATCCATGCATGC-----------------------------
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-----------------------------------------------TGCAGTCGTAGCAAAATCCACCACAAGGAGTGC
ATATGTGCAGGTGCAAGCGCAACCCACC------TACGTCCGCATGCAGTATGCTTTGTATATCGACCAGTACGTACTAG
CTACGTAC----TCCATTACCGGGATCGACTTTTACTTGTTAATAATCTTGTCAGCAGCAGCCGAGGGCCGGCGACCCTA
TCCTG----CCGGGCGTCACCTCGGATCGAATTT---GCCGGCCGG-----------------------AGCCGGCGGAT
TGGTTTGAACCCCGTGGAAAGTGCACGGA---------------GCAGTGCAGAAACCACGGAGCTAAAAACCGATTTGA
TATGCTCTATCTT------------------------------------------------------------CGAGCAA
CGCGACGCCTATATAAACCAGCCCACCCTGCAGCCCAAAATGGCA----------TCTAGGTGTTGC----AGGTACAT-
------------------------------A---GGTTGCTAGCTAAGCTTGCATGCGCATGGCCAAGACTCGCGTGCTC
CGCTGTGCGGTGCTGGTGGTGTGCGTCCTCCTGGTTCTCTCGTCCGCATCTGCCGCGGCCGAGGCAGCTGGTCGGCAAAG
GGGTCATGGGAGAGAGGCCAC---GGCGCCGGCGGCGATGGCAATGGCGA---CAGGGCGTTTCGTCAGGAAGGTGCTGC
GGGAGGAGATGGTTCAGGCAGACGGCCATGGCGACATTGGCCAGTCCAAGAGGACCAGCCCCGGCGGCCCAGACCCGCAG
CATCATTAGTT---GATGTCGGTTCAC-----------------------------------------------------
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----------------------------------------------------------------------
>chr1D_545
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----------------------------------------------------------------TTT----CATTTGTCG
GCAAAAAGATGGTTCATTGTGCACACATGCATGCACCCAATCCATGCATGC-----------------------------
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-----------------------------------------------TGCAGTCGTAGCAAAATCCACCACAAGGAGTGC
ATATGTGCAACCGC-----CAACCCACGTCCACGTACGTACGCATGCAGTTTGCTTTGTAAATCGACCAGTACGTACTAG
CTACGTAC----TCCATTACCGGGATCGACTTTTACTTGTTAATC-T--TGTCAGCAGCAGCCGAGGGCCGGCGACCCTA
TCCTGTCGATCGGGCGCCACCTCGGATCGAGGTT---GCCGGCCGGCCAGCCGTGTTACCGCACGCCGGAGCCGGCGGAT
TGGT-TGAACCCCATGGAAAGGGCACGGA---------------ACAACGCAGAAACGACGTGGCTACAAACCGATTTGA
TATGCTCTATCTTG----CCTGTGCACGT----CGCTCTAGTG---CACCGGTTCCGCGCGGGCCAGGCTTTTCGACCAG
CGCGACGCCTATATAAACCAGCCACACCTGCAGCTCAAAATGGCAGCCGCAAGCATCGAGGCGTTGC----AT-------
------------------------AGGTACA---GGTTGCTAGCTAAGCTTGCATGCGCATGGCCAAGGCTCGCGTACTC
CGCTGTGCGGTGCTGATGGTGTGCGCGCTCCTAGTTCTCTCGTC---------------CGAGGCGGCTGGCCGGCAAAG
GGGTCATGGGAGAGAGGCCACGGCGGCGCCGGCAGCGATGGCAATGGCGA---GAGGGCGTTTTGTCACGAAGGTGCTGC
GGGAGGAGATGGTTCAGGCGAATGGCCAGGGTGGCATTGGCGAGTCTAAGAGGACCAGTCCGGGCGGCCCAGACCCGCAG
CATCATTAGTT---GATGTTGGTTCACCACCTGTCACGTTGCGTGCGTTGAGCTTTCATGCAATAAATCA-CGT------
---------------------------TCTTGT------------------------CTTGGTAGCAAAAGAGATTTTTT
TTTTCACAAGC------ATATGTATACAGTGGACGTCGTCG---------------------AGTACTTGTTACTACTAG
TGTACTGCTACGTTACCACAGAAGTAGCATG-------------------------------------------------
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----------------------------------------------------------------------
>chr1D_601
CATGTGTGTGGAACAGGTTATATGTTGTCACTTGTTTTTCAGAATGATAAATTTTAACACTTATCAGCATTTTGTCATCG
TTTTTCACAAGTTTTCCTTTTATTGGATCGTCTACCCTATGTGTCCCGAATTACTTTTAGTCTCTACCACATTCTAATAT
GCCAACTTATACATCTTTAGAATACCTAATATTTTAGTTTTCTCTGGTAAAATTGCATCCTCCCAAACAACATAGCGAGA
GAGGAGTCATGTCATTAAACCCCTAGCCCCTCGGTAAATCATCAACCTTCTTATTTATAATACCATCGGTTGCCCTCGCT
TTTGACCGTCAATATACCATCTACATGCGGGGTGGCTATTAGCATCATAGATGGAACCCTTTAGCAAGTTTAAGGAACCA
TATTGGTACACTTCCTGAGTTTCACAGCCATAATGAGCGATGCCAATCTACCATGGGCACATTATTATCTATCGCCATGT
GCTTGCGTACAAACTTCGCACACAATGGTAATATGTTTGAGGGGGAAGCCAACCAACACTAACTTGCTAGGTAGAAAGCT
AGCGGTCACTTTCTGGAATCTAATTATTAGGCTGTTCATGCACACTTGTGGATCGAAAAAGGAAAATAATTGCCCCTCTC
CTTTCTCAAATCTAGGAAACCATGAGTTGTAGAAAACCCTCCAAAACCACTTTCAATTAATAAGGATGGGCTTTAAAAAT
AATATTTAAAGTTGTCGGAAGTTTCAAAATTAAAGATAATTTTCAGAATTTTTAGTGCTAGCTTTCAACTTTAACTAATT
CCGGTGTCAACCCCCAGAAATTCTTGTGCTCTCTTTAAAAAAAACATGCCAACAGAAATGTCATCATACTTTCAACAATA
CTATCAAAGGCTTTCAACAAAACTATGTCAAGATTCCCACGATTTCATCATAGCTTTCAACAATTTTCATAAAATCTAGA
AGTTATCATTCAAAACTCTAGGAACCAACAGTATTAGAAAAAAAAATCTTTAATACCATCTTTGAAATAAAATATAGAAA
TGAACTTTTGCAACCTAAAATAAGCAATGGAGTTGGCATAGTTGGTGGCTGGTGTTGTTCCTCTTCATGGTGAGCAGCTA
GACGCATGTTGACACACATTGCAACAGAGGTGAGGAGCGTCCCTGGTGAGGTGGGGAAGTAGCAAGACCCCTAATAGTGA
CGCACGTGCATAGACCAATCCGGGGTTCTTCGAAAAGGAGGTGATCCAGGTTGTGCACGCAAGCATGCACCCGACCCATG
CATGCAGTCATAGCAAAATCCAGCACAAATTAATCATGTGCACGAAAATTGTGCATGCATGGATGTCCCTCTTGGAACAA
GTTCACGCCTCGCTTTAGAGATAAACCATAAATCATAATATAGGTCGAATGTTACAAGGCAGTCTGACAAAGCGGTTCGC
AAGATAACCTGACAAAATAAGCGACACGACTACATATATGAAGGACTAAATACAATGTCATGTCAGGCCCTAAGACACAT
AAGCTTCACGACAACCCTCAAGAGGAGAAACAGCATGAAGCGTCGATATTGTCGAGTCAAAACTATACTTTATGACCCAC
TATACTTTAGGACTGATTGGTGTGAGAGGCGGCCCTAACTTTGTCGGCAAAAAGAGAAGTGTGCCTTCTTTTCACCGGAT
GTATAGGATTTGTATTCAGGGTATTGATTGGAAGGGGAAATAGGGGGTAGTCCATTCTCCACTAGTAGATGTAGGCTGAC
ATCTAGGCTGACGAAGCTGCTCAGTTAGAACTTAGCAGTACATTTTCTGGATGTCCAGTGTACCGGTACCACCACGTACG
AGGATAAAGGTTGTCCTTCTTTTGCGTTTGCATTTGTCATGTCAATCCGTCGATGACAAGCCAAAAGGAAAAGAAGAAAA
AAAGAAAACCTATGCTGATCATCATCCACGACTCCGCAAGTGCTTGCTTAAGCCATGTACAATGCTAGGTTCTTGGAAAA
ATAAATCGATTTTTTCTAAAGCACCAACGCCTATTTTTAAAAGGAAAGACGCCTAATTAAGCGTCTACAAATAAGCACCG
ATGCTTAAGGTTACACTGATTTATTTCTCTAAATACCTTTCCTAAACGTCTTGCATTGTACAAAGACCTTATCCTCGCAC
TTGCATGCATGCATCATGCATGGATTTTTTTTTTCAAAACTATCATGTTTTTATAGCAAATTCGGAAACTATAGCACCCA
ATACAAAAAAAACAAAACTATGACCCTGTCAGCCTCGTGTGGGCCGAAGAGGGTGTTTTCGGTCGGCGGTTGGCCGAAAA
GGACTCTTCGGTCACGCATTGGCCGAAGAGATCTGTAGCTGGGCCAAAAAGGCCTTTTTGGTCAGCAGTAACTCGAAAAG
TACTCTTTGGTCAGTAGTAGGCCAAAGAGTCCCTGGGGCCCACCTTTTCGCGTGAATGGGAGGCCGAAACTGCATGGCTG
CGCTCTTCGGCTTATGTTAGGCCGAAATGGTTTTTTTAATAATTTTGACTTATGAATGTTGTGCAACCATTGCCCATCTT
AAACATTGAAAAGATATATTTTCGCACAACCCTTTCCCTCAATATTTTCCCGCCAACTCTTTCCCACCATATGTTCCCGC
CACCCGTTCCCCGCCAACCCCTAGCCACCGATTTCAGGATGGACAATAGGATAGTTCCATGGGACGAACTCATCGGTAGT
GACACCATACTGAATGAGTTGGCTCACGCATTACGTAGGTTTGGGTGGCCTGAAAGGACCTATGAGGAGGTACGTAAAGA
ACTGCTGAGGTTGCATGGAAGGTGGAAGAAGGTAGTGCGGACGAAGAGTGAAAAATTCATAAGGACTGCAGCAGAGCATA
CATATTTATGGATTGCCGACATCGAAGAAGAAGACGATATCTTCATGCCGAGCACCAAGGCCAAGAGTATCAAACCATCG
AAGCGCAAGAGTACCACATCGTCGAAGGGCAAGAGTGCTGCGTCGACGGAGGGCAAGAGTACCGCATCGTCGAAGGGCAA
GAGTGCTGCATCGACGGAGGATGACGATGATGCCTTCATGTAGTATGTAAGCTGTATTTTTTAAGTTCATCCCTACCGTT
TAATTCAAATGTACTTGTATCTTAATTATCGGTTGCAGTCTTTTTGGAAATGTAACTCGAATAACAATGTGGATTAATAG
TAATATGTCTCTCGCATACATAAAACAATATATGTCTCCTGATCAGATTCATAAGTCAAAATTCAAAAAGAAAAAACATT
TCGGCCTAACATAAGCCGAAGAGCGCAGCCATGCAGCTTCGGCCTTCCGTTCACGCAAAAAGGTGGGCACCAGGGACTTT
TCCGTCTACTGCTGACCAAAGAGTACTTTTCGGCCTACTGCTGACCAAAAAGGCCTTTTCGGCCAGCTACGGATCTCTTC
GGCCAATGCGTGACCGAAGAGTCCTTTTCGGCCCACCGCCGACCGAAAACACCCTCTTCGGCCCACACGAGGCCGACGGG
GTCATAGTTTTGAATTATTTTTTTGCATTAGGTGCTATAGTTTCCGAATTTGCTATAGAAAACGTGATACTTTTGAAAAA
AAATCTCATGCATGTGCCCAACCTCAACCCAAACCAGTAGCCTGCCGGGTCCAAATCACGCACGTGCAGGTAGAGACGAT
TCATTTGTGTGTGAAAAGGGACATGGACGAACTTGTGCATGCATGCATGCAATCGTAGCAAAATCCACCACGGGGAGTGC
----GTGCAACCCA-----CCACCCACGTACGTAT--------ATGCAGTATGCTTTATATTTCGACCACTACGTACTAG
GTACGTAC----TCCATTACCGGGATCGACTTTTACTTGTTAATC-TCTTGTCACCACCGGCCGGGCCCGCCCAACCCTG
TCCTA----TCGGGCGCCACTTCGGA----GTTGTCGGCCGGCCGGCCAGCCGTGTTATCTGACGCCG--GCCGGCGGAT
TGGT-GGAACCCCGTGGAAAGTGCACCGAAACAACGCAGAAACGA-------------------CTACCAACCGATCTGA
TTTGCTCGATGTCT----CGTGTGCACGTACGTCTCTCTAGTGCTACACCAGTTTCGCGC--------------------
----ACGCCTATATAAACAAGCCAC--CACCCGCTCA------CATCCGCATGCACTCAGGCGTTCACCGAGCAGATATC
A-----------CTCTAGCATTGCAGGCACAAGTAGTTCCTGGCTACGTTTGCATGCGCATGGCCAAGGCTTGCGTGCTC
CGTGGTGCGGTGCTGGTGGTGTGCGCGCTCCTAGTTCTCTCGTCCGCATCTGCGTCGGCCGAGGCGGCTGGCCGGCAAAG
CGGTCATGGGAGAGAGGCCA---CGGCGCCCGGAGCGATGGCAATGGCGA---GAGGGCCTTTCGTAAGGAAGCTGCTGC
GGGAGGAGATGGTTAAGGCGGACGGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCCGGCGGCCCAGATCCGCAG
CATCATTAGATCACGATGTCGGTTCACGTCCGGCCTCATTGCGTGCATGCAGTTTTGATGAAACAAATCA-C-T------
---------------------------TCTTGT------------------------CTTGGATATGTACGTATGCAGT-
----------------------------------GTAAGTCGTCGTTGATATGTACGTACGGAGTACCTGTTACTAGTAG
CGTACTACTATGTTTCCACCGAAGTAGCATGGGTGTGGCACAGGC--TATATATATGTTGTGACTGGTTTCTCAGAATGA
ATAAA--TTAACTTTTGTCCGCATGTTGTCACCGTTTTGCACAGATTTCAGTTTTATTGGATCGTCTACCCTATGTGTCC
CAAATTTCTTT-AAGTCTCTACCACATTCTAATATTTCGATCATCAATT--TTTTTCTTCCCCCTAGCTAACTTATAGTA
CTTATCATAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GTATAGCAAATCTTATAGTTATCTCGGGTAAAATTGCATCCTCCCAAACCACAGAGCAAG
AGAGGAGTCATGTCATTAAACCCTTAGCCCATGGG---------------------------------------------
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----------------------------------------------------------------------
>chr1B_695
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--------------------------------------------------------------------AGTACGTAGTAG
GCTACTAGCTGTTCCATTGACGGCTTCGACTTTTACTTGTTAATC-TCATGTCACCACCGGCCGGGGCCCGGCGACCCTA
TCCTG----CCGGGCGCCACCTCGGA----GTTT---GGCGGCCGGCCAACCGTCTTATCGCACGCCGGAGCCGGCGGAT
TGGT-GGAACCCCGTGGAAAGTGCACGGA---------------A-------------------CTACCAACCGATTTGA
TATGCTCTAGCTCGTGTACGTGTGCACGTACGTCGCCCTAGTGCTGGCCAGTTACGCTCTGGGA---------CGACCAA
CGCGACGCCTATATAAACCAGCCAC--CTGCCGCTCAGAATCTTGC---------------CGTTCACAGAGCAGAGTTG
CCGTTGCACTTGCACTTGTATTGCAGGTCCA---AGTTCCTAGCTAAGCTTGTACGCGCATGGCCAGCGCTTGCGTGCTC
CGTGGTACGGTGCTTGTGGTGTGCGTCCTCCTGGTTCTCTCGTCCGCATCTGCGGCACGCGAGGCGGCCGGCCGCCAAAG
AGCTCATGGGAGAGAGGCCAC---GGCGCCGGCGGCAATGGCAATGGCGA---GAGGGCGTTTCGTCATGAAGGTGCTGC
GGGAGGAGATGGTCCAGGCGGACGGCCAGGGCGACATTGGGCAGTCAAAGAGGACCAGCCCCGGCGGCCCAGACCCGCAG
CATCATTAGCT---GATGTCCGTTTACTGCCGGTCTCGTTGCATGCATG-AGTTTTCATGCAACAAATT-----------
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----------------------------------------------------------------------
>chr1D_1041
--------------------------------------------------------------------------------
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--------------------------------------GCTAGCTAAGCTTGTACGCGCATGGCCAGTGCTTGCGTGCTC
CGTGGTGCGGTGCTTGTGGTGTGCGTCCTCCTGGTTCTCTCGTCCGCATCTGCAGCGGCCGAGGCGGCTGGCCGGCAAAG
AGGTCATGGGAGAGAGGCCAC---GGCGCCGGCGGCGATGGCAATGGCAGCAGGAGGGCGCTTCGTCAGGAAGGTGCTGC
GGGAGGAGATGGTCCAGGCGGGACGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCCGGCGGCCCAGACCCGCAG
CATCACTAGAT---GATGTCGGTTCACGG-CGGTCTCGTTGCATGCACGTAGTTTTCATGCAACAAATTA-CGTATCTGC
CGGGCATCATAGGGGCCTGAATTCAAGCCGATCTAGCCAGCTTGTGTTCCTGTCTTGCATGCTAGCAAAAGAGAAAATTT
TGTTTTTCCCCAAGCATATATGTATACAGTGTACGTACGTCCTCGTTGATATC----TACGGATTACCTTTGACTAGTAG
TGTACTACCACGTTACGATAGAAGCACCATGTGTGTGGATGT-----TATATATATGTTGTGAGTGGTTTCTCAGAATGA
ATACGTTTCAACTTTTATCCGCATTTT-TCATGGTTTTGCACAAA-TCTCAGTTTATTGGATTATCTAACTTGCTTGTCC
CAAATT-CTTT-AAAACTCTGCCACATTATAATATTTCGATCAACAATTTCTTTTTCATTCCCCTAGCTTACTTATACAT
AATTAGTACTCCCTCCGTTTTTTCTTCATATAAGTTTTTTCAGAAGTCAAAGTACCTCCAATTTGACCAAAACATGTAGA
ATAAAATATCAACATTCACAATACCAAATAAATATCATTAGATTCATTATGGAGGAAAGTAGTTTCCTCTTAAATGTATT
TAGCATTAGATATTGACATTTTTTAATATAAATTTGGTCAAAACCTGCAAAGTTTGACTTGATACAAATCTTATATGCAG
AGTAAAAGGAAATGGAGGCGGTATATCAAAACTTTTACCTATCTCGGGTAAAATTGCACGCTTCCGAACCCCATAGTGGG
AGTGGAGTCATGTCATTAAATCCCTCGCCCCTAGGTAAATCGTCAACCTTTTTAATCACG-------TCGGTTATCCTCG
CCTTTGACCGTCAATCGACCATCTACATGCCGGGGTGGCTATTATTAGTATCGCAGATGAAACCCTTTAGCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGTTTAAGGAACCATATTGGTAAACTT
CCTGAGTTCGAGAGCCATTTCGAGCGATGCCAAATACTCTAGTTCACTACCATGGACACATTATTCCCAATT--------
--------------------------------------------------------------------------------
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--------------------------------------TCATGTCATTCTCTTGCGCAAAAACTTAGTACACAGTGATAC
TATGTTTCACAGGGAAACTAACCAATAGTGATTTGCTGGGTAGAAAGCTATCAGCCACTTTCTGGAATCTACATATTCGG
TTGTTCGAGGACGCTTGTGGCACAAAAAAGGAAAAAATTGCTCTTTTCCCTTTCCCAAATTTGGAAAACCTCATGTTTTG
G-------AAATACCTTCAAAACCACTTTTTAATTGATAAGGATGGGATTTCAAAATAAAATTTAGAGTTGCCAGAATTT
TTACTTTCAAAATTAAGATAACTTTTAGAATTTTTAGTGTTAGCTTTCAACTTTCACGAACTTCGGTGCCAGCCCCCGGA
AATTCCAATGCTATTTTTAAAAACCACATGCCAAC---------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr1A_1117
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----------------------------------TTCTCTCGTCTGCATCTGCGGCGGCCGAGGCGGCTGGCCGGCAAAG
GGGTCACGGGAGAGAGGCCAC---GGCGCCCGCAGCGATGGCAATGGCGA---GTGGGCCTTTCGTCAGGAAGGTGCTGC
GGGAGGAGATGGCTAAGGCGGACGGCCAGGGTGACATTGGCCAGTCTAAGAGGACCAGCCCCGGCGGCCCAGATCCGCAG
CATCATTAGATCACGATGTCGGTTCACGTCCGGCCTCATTGCGTGCATGCAGTTTTGATGAAACAAATCA-C-TTCTTGT
CCTGGATTTGTCTCAAAAAAAAAAACTTCTTGT------------------------CTTGGATATGTACGTATGCAGT-
----------------------------------GTAAGTCGTCGTTGATATGTACGTACGGAGTACCTGTTACTAGTAG
CGTACTACTATGTTTCCACCGAAGTAGCATGGGTGTGGAACAGGCTATATATATATGTTGTGACTGGTTTCTCAGAATGA
ATAAA--TGAAC-----------TTTTGTCACTGTTTTGCACAAGTTTCTGTTTTATTGGATCGTCTACCTTATGTTTCC
CAAATTTCTTTCAAGTCTCTACAACAAA------------------------TTTTCATTCCCCTGGCTAACTTATGGTA
C--ATCATTA----------------------------------------------------------------------
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--------------------GTATACCAAATCTTTTAGTTATCTCGGGTAATATTGCATCCTCCCAAACCACAGAGCAAG
AGAGGAGTCATGTCATTAAACCCCTAGCCCATGGGTAGATCATCAACCTTTTTAATCCCG-------TCGGTTCCCCTCG
CCTTTGACCGCCAATCTACAATCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTAAGGAACCATATTGGTACACTT
CCTGGGTTTGAGGGACATTTGCAGCGATGCCAG------TAGTCCATTACCATGGACACAGTATACTCAATTCATGTCAT
GTGCTTGCACACAAACTTAGAATACGATGGTAATACGTTTGTTGGGCAAGCTAACCAACAGTGACTTGCTGGGTAGAAAG
CTAGCAGGCACTTTATGGAATCTACTTATTAGGTTGTTTGTGCATGCTTGTGGCACGAAAAAGGAAAGCATTGTTCTTCT
CCCTTTCTCAAAGTTGGAAAAACCACATGTTTTAGAAGAAAAAAAACTTCCAAAACCACTTTCAATTGATAAGGATGGGC
TTTAGCAATAAGATTCAAAGTTATTGGAATTTTTAGTGCTAGCTTTCAACTTTCACAAATTCTAGTGCCAACCCCTAGAA
ATTCCAGATGATCTTTAAAAAACACATGCCAACAGAAATTTCATCACACTTTCAACAAAAATATCAAAGGCTTTCAACAA
ATTTTGTCAAGGTTCCAACATTTCATCATAGCTTCCAACAATTTCACAAAATCCAGAAACCAATTTTCAAGAATCTAGGA
ACCAACAACATTAAAAAGAATGCTACATCATCTTTGAAATAAGGTACATAAATGAACTTTCTGAACCGAACATACGCAAT
GGAGTTGGCATAGTTGGTGGTGGGCATTGCTCCTCTTCATGATGAGTAGATAGTGGCATGTCGTGATGCTTCGCAACAGA
GGCGAGGAGTGTCCCTAGTGAGGTGGGGAGGTACCAAGATGCCCTGTAGCAGCACTCTTCAAGTGTGGGGACTCAACGAA
GTGTTTTTGATGAGGCGTCACCCTCCGAGGTGGCACCTTTGTGAGGCAGGGTTGTGACCATGCACTCTAGTTCAAGTGGC
ACTCACTGAATCGCTGATGTAGGAGTGCAATAGGTAGATTTCCCTCGGAGGGAAGCTAGGTGGCACGTCGGCAGCATGGG
GAAGGTGTGGGGAGGTGAGCTCAATAGCGTGTCGATCTGTCAGGGAAGACGTGACGAGGTGGAGCCCAGCGATGCGTTGC
TCAAGATGATGTAGGGTTAGGGGAGAAAGGAGAGAATAAGGTTGAGGTAGAGCAACAAATGATGTAGTCGTAAGGGGCAT
GTGTGGGAACAAGAAAAAAAAATAGGCTTGGGCCTCGAGACTTTGGGGACAGAAAATGTGTGTTATGGTGCGAGCGTGCT
AGGACAAGCGGGGCGGATGGTGTCAAAAATTCACTGTGGCCTTGGGTACCCATGGTTAGCCCTCTTGGTCTGTTTGATAC
TCCCTCTGCACATGTATACAAGATCAAGTTGTTATTTGCTTCTAACTTTGCCCATCAATTGACTAATAGAAAATAAAAAT
AAAAAAACGTGCACGTTTCTAAAAAACATATTATTACTAAACATGCACTATTTGTCGACTAACCTAATAATTTATCCAAA
AACTTACTTTATGCAAGACCTACACTGTCGAACGGCATCAGCAACTTTTCTGTCTGCCGACGAAGCAGAGAAGGGTGTAG
TAAGCAACACGATGACTAATGCCACGAGCTTAAGGAACCATATTGGTACACTTCCTGGGTTTGAGGGACATTTGCAGCGA
TGCCAGTAGTCCATTACCATGGACACAGTATACTCAATTCATGTCATGTGCTTGCACACAAACTTAGAATACAATGTTAA
TACGTTTGATGGGCAAGCTAACCAACAGTGACTTGCTGGGTAGAAAGCTAGCAGGCACTTTATGGAATCTACTTATTAGG
TTGTTTGTGCATGCTTGTGGCACGAAAAAGGAAAGCATTGTTCTTCTCCCTTTCTCAAAGTTGGAAAAACCACATGTTTT
AGAAGAAAAAAAACTTCCAAAACCACTTTC-AATTGATAAGGATGGGCTTTAGCAATAAGATTCAAAGTTA---------
------------------------TTGGAATTTTTAGTGCTAGCTTTCAACTTTCACGAAGTCTAGTGCCAACCCCTAGA
AATTCCAGATG-ATCTTTAAAAAACACATGCCAACAAAAATTTTATCACACTTTCAACAAAAATATCAAAGGCTTTCAAC
AAATTTTGTCAAGGTTCCAACATTTCATCATAGCTTCCAACAATTTCACAAAATCCAGAAACCAATTTGCAAGAATCTAG
GAACAAACAACATTAAAAAGAATGCTACATCATCTTTGAAATAAGGTACATAAATGAACTTTTTGATCGAACATACGCAA
TGGAGTTGGCATAGTTGGTGGTGGGCGTTGCTCCTCTTCATGATGAGATAGTGGCATGTCGTGATGCTTCGCAACAGATG
CGAGGAGTGTCCCTAGTGAGGTGGGGAGGTACCAAGATGCCCTGTAGCAGCACTCCTCAAGTGTGGGGACTCAACGAAGT
GTTTTTGATGAGGCGTCACCCTCCGAGGTGGCACCTTTGTGAGGCAGGGTTGTGACCATGCACTCTAGTTCAAGTGGCAC
TCACTGAATCGCTGATGTAGGAGTGCAATAGGTAGATTTCCCTCGGAGGGAAGCTAGGTGGCACGTCGGCAGCACGGGGA
AGGTGTGGGGAGGTGAGCTCAATAGCGTGTCGATCTGTCAGGGAAGACGTGACGAGGTGGAGCCCAGCGATGCGTTGCTC
AAGATGAGGTAGGGTTAGGGGAGAAAGGAGAGTATAAGGTTGAGGTAGAGGGACAAATGATGTAGTCGTGAGGGGCATGT
GTGGGAACAAGAAAAAAAAATAGGCTTGGGCCTCGAGACTTTGGGGACAGAAAATGTGTGTTATGGTGCGAGCGTGCTAG
GACAAGCGGGGCGGATGGTGTCAAAAATTCACTGTGGCCTTGGGTACCCATGGTTAGCCCTCTTGATCTGTTTGATACTC
CCTCTGCACATGTATACAAGATCAAGTTGTTATTTGCATTTAACTTTTCCCATCAATTGACTAATAGAAAATAAAAAATA
AAATAACGTGCACGTTTCTAAAAAAACATATTATTACTAAACATGCACTATTTGTCGACTAACCTAATAATTTATCCGAA
AACTTACTTTATGCAAGACCTACACTGTCGAACGACATCAGCAACTTTTCTGTCTGCCGACGAAGCAGAGAAGGGTGTAG
TAAGCAACACGATGACTAATGCCACGAGCTTAAGGAACCATATTGGTACACTTCCTGGGTTTGAGGGACATTTGCAGCGA
TGCCAGTAGTCCATTACCATGGACACAGTATACTCAATTCATGTCATGTGCTTGCACACAAACTTAGAATACGATGGTAA
TACGTTTGATGGGCAAGCTAACCAACAGTGACTTGCTGGGTAGAAAGCTAGCAGGCACTTTATGGAATCTACTTATTAGG
TTGTTTGTGCATGCTTGTGGCACGAAAAAGGAAAGCGTTGTTCTTCTCCCTTTCTCAAAGTTGGAAAAACCACATGTTTT
AGAAGTAAAAAAAACTTACAAAACCACTTTCAATTGATAAGGATGGGCTTTAGCAATAAGATTCAAAGTT
>SNPs
-SS-SSSSS-SSS-S-SS-SSSSS-S-SS-SSS-SSSSSSSSSSSSS-SSSSSSS--SS-SSSSSSSSS---SS--S--S
S-SSSSSS--S-S--SSSSSS-S-SSSSSS-SS-SSS---S-S-SSS-SSS-SSSSSSSSSS-SSSS-SSS-SSSSSS--
S-SS-SSSSSSSSSSSSS-S--SSS-SSS-SSSS-SSSS-SSSS-SSSSS-S-SSSSSSS-SSSSS---SSS-SS-S-SS
SSSSSSSSSSSSSS-S-SSSSS-SSSSSSS-SSSSSSS-SSSSSS--S---SSSSSSSSSS--S-SSSS-SSSSSSSSSS
SSSSS--S-SSSS--SSS--SS-SSSSS-SSS-SS-SS--SS-S-SS-SSSSSS-S-SSSSSSS-SSS-SSS-SSSS-SS
-SS-S-SSSSSSS--SSSSSSS-SSSSSSSSSSSSSSSSSSSSS--SSS-SS-SSS-S-SSS-S-SSS---SSSSSSSSS
SSSSSS-SSSSSS-S-S-SSS-S-SS--SSSSS-SS--SSSSSSSSSSSSSS----------------------------
SS------SSS---------------S--------------------------SSSSS-S-SS-----------------
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------------------------------------------------------------S-------------------
---------------------------------------------------S--------S-----S-------------
-------------------S--------------------------------------------------S-----S---
-----------S------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------SS-S---------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------S--------S-----------------S--------
-----------S--------------------------------------------------------------------
---------------------------------------------------------------------SS---------
--------------------------------------------------------------------------------
-----------------------S-------S---------SS-------------------------------------
--------------------------------------------S----------------S---S----S---------
SS----------S-------------------------S-S---------------------------------------
-S----------S------------------------S---------S----S---------------S-----------
------------SSSS----------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------S----S-----------------------S----------
-----------------------------------------------------S--SSSSSSSSSSS------S----S-
-S-------------S--------------S-----------S-SS-SS----------S--------------------
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---------S-S------SSS------------S--------------------S----------S--S--SSS------
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--------------------------------------------------------S--------SSS------------
---------S--------S--------S-S-------S--------------S-S----------------S-----S--
------S-----S-------SS---------------------S-----S--SS-S--SS-S--S-----SSS----S-S
------------S----------------------S-----------------------S-----------S-----S--
---------------------S---S----------------------------S--S--S-------S-----------
-----S------S-----------------------S-------------------------------------------
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----------------------------------------------------------------------
>forward_36
----------------TCTTCGGTTCGCTAGGAGGA--------------------------------------------
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>reverse_5913
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------------------------------------------------------------------------GCCATGTG
CTTGCGTACAAA--------------------------------------------------------------------
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----------------------------------------------------------------------
